Multiple sequence alignment - TraesCS7B01G313700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G313700 chr7B 100.000 4143 0 0 1 4143 560524580 560528722 0.000000e+00 7651.0
1 TraesCS7B01G313700 chr7B 100.000 3012 0 0 4452 7463 560529031 560532042 0.000000e+00 5563.0
2 TraesCS7B01G313700 chr7B 91.538 130 11 0 2123 2252 711064283 711064154 5.950000e-41 180.0
3 TraesCS7B01G313700 chr7A 91.593 3069 187 26 4452 7463 604393556 604396610 0.000000e+00 4172.0
4 TraesCS7B01G313700 chr7A 87.466 1452 128 25 2256 3677 604391489 604392916 0.000000e+00 1624.0
5 TraesCS7B01G313700 chr7A 85.210 1332 109 45 399 1691 604389709 604390991 0.000000e+00 1288.0
6 TraesCS7B01G313700 chr7A 89.754 488 30 9 1651 2121 604391003 604391487 2.300000e-169 606.0
7 TraesCS7B01G313700 chr7A 88.529 401 40 5 3694 4094 604393038 604393432 1.460000e-131 481.0
8 TraesCS7B01G313700 chr7A 89.823 226 17 4 1 224 604383122 604383343 1.230000e-72 285.0
9 TraesCS7B01G313700 chr7A 88.235 136 16 0 2124 2259 657531584 657531719 5.990000e-36 163.0
10 TraesCS7B01G313700 chr7A 86.986 146 15 1 2940 3085 729340424 729340283 2.150000e-35 161.0
11 TraesCS7B01G313700 chr7A 86.897 145 15 1 2941 3085 729362989 729362849 7.750000e-35 159.0
12 TraesCS7B01G313700 chr7D 91.417 1934 128 22 4452 6378 524322710 524324612 0.000000e+00 2617.0
13 TraesCS7B01G313700 chr7D 86.716 2183 127 64 8 2124 524318748 524320833 0.000000e+00 2274.0
14 TraesCS7B01G313700 chr7D 90.544 1692 107 17 2409 4095 524320955 524322598 0.000000e+00 2189.0
15 TraesCS7B01G313700 chr7D 88.566 1067 93 13 6415 7461 524324586 524325643 0.000000e+00 1267.0
16 TraesCS7B01G313700 chr7D 93.893 131 8 0 2128 2258 98287753 98287623 1.640000e-46 198.0
17 TraesCS7B01G313700 chr7D 94.355 124 7 0 2256 2379 524320833 524320956 2.750000e-44 191.0
18 TraesCS7B01G313700 chr7D 92.857 98 7 0 2126 2223 144334904 144335001 7.810000e-30 143.0
19 TraesCS7B01G313700 chr7D 90.722 97 9 0 2127 2223 143713066 143712970 6.080000e-26 130.0
20 TraesCS7B01G313700 chr6D 80.605 397 70 6 6645 7038 409770604 409770996 4.380000e-77 300.0
21 TraesCS7B01G313700 chr2A 93.130 131 8 1 2123 2252 29285121 29284991 2.750000e-44 191.0
22 TraesCS7B01G313700 chr4A 92.742 124 9 0 2126 2249 13059832 13059709 5.950000e-41 180.0
23 TraesCS7B01G313700 chr3D 90.370 135 13 0 2124 2258 415630176 415630310 2.140000e-40 178.0
24 TraesCS7B01G313700 chr6B 88.971 136 11 1 2940 3075 32297527 32297396 1.670000e-36 165.0
25 TraesCS7B01G313700 chr1B 90.099 101 10 0 2124 2224 97512998 97513098 1.690000e-26 132.0
26 TraesCS7B01G313700 chr2D 77.841 176 26 3 2740 2914 385168335 385168172 6.160000e-16 97.1
27 TraesCS7B01G313700 chr2B 87.692 65 6 2 2823 2886 15570892 15570829 2.890000e-09 75.0
28 TraesCS7B01G313700 chr2B 87.500 64 6 2 2824 2886 89780257 89780195 1.040000e-08 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G313700 chr7B 560524580 560532042 7462 False 6607.0 7651 100.0000 1 7463 2 chr7B.!!$F1 7462
1 TraesCS7B01G313700 chr7A 604389709 604396610 6901 False 1634.2 4172 88.5104 399 7463 5 chr7A.!!$F3 7064
2 TraesCS7B01G313700 chr7D 524318748 524325643 6895 False 1707.6 2617 90.3196 8 7461 5 chr7D.!!$F2 7453

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
180 189 0.037697 TTGGATCGGGCCGATAATCG 60.038 55.000 38.89 6.02 47.00 3.34 F
845 906 0.038159 CGAGCTCGATTCCATACCCC 60.038 60.000 32.06 0.00 43.02 4.95 F
2200 2343 0.179084 TCCGAGAAAATAGGCTGCGG 60.179 55.000 0.00 0.00 38.68 5.69 F
3754 4051 1.074623 CAGAGGAGGAGGAGGGCAT 60.075 63.158 0.00 0.00 0.00 4.40 F
4027 4324 0.268869 AGGAGCTGTATGGGGGATGA 59.731 55.000 0.00 0.00 0.00 2.92 F
4137 4468 0.549469 CCGCCCACCCTACCTATTTT 59.451 55.000 0.00 0.00 0.00 1.82 F
4507 4838 1.371183 CTCCAACCTCGCCACTTCA 59.629 57.895 0.00 0.00 0.00 3.02 F
6150 6503 0.250295 ATATTAGCGCATGCCACCGT 60.250 50.000 13.15 0.00 44.31 4.83 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1593 1668 0.610232 GCCCACAGTTTCAGCCATCT 60.610 55.000 0.00 0.0 0.00 2.90 R
2538 2685 0.179045 ATATCTTCCACCAGGTGCGC 60.179 55.000 14.98 0.0 35.89 6.09 R
3799 4096 0.105709 CCTCCTCCTCCCCTCTCTTC 60.106 65.000 0.00 0.0 0.00 2.87 R
4561 4892 1.070786 GCCAAGACGTCAACCCTCA 59.929 57.895 19.50 0.0 0.00 3.86 R
4843 5194 1.217916 TGAAGTTGAGGGGTGGTTCA 58.782 50.000 0.00 0.0 0.00 3.18 R
5119 5471 1.270550 GTTGTGGAGTTGGAGCCATTG 59.729 52.381 0.00 0.0 36.41 2.82 R
6237 6607 0.096454 CACATCGAGCATGCACAGTG 59.904 55.000 21.98 17.3 35.65 3.66 R
7016 7409 1.006337 TAACCACGGTTTCGACGGG 60.006 57.895 6.80 0.0 39.31 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 96 6.443934 AACACATATAATGCGCCTTTTGTA 57.556 33.333 4.18 0.00 0.00 2.41
98 99 8.335532 ACACATATAATGCGCCTTTTGTATAT 57.664 30.769 4.18 0.00 0.00 0.86
99 100 8.236586 ACACATATAATGCGCCTTTTGTATATG 58.763 33.333 17.31 17.31 37.68 1.78
106 115 6.503589 TGCGCCTTTTGTATATGTTTTAGT 57.496 33.333 4.18 0.00 0.00 2.24
113 122 9.906660 CCTTTTGTATATGTTTTAGTGAAAGCA 57.093 29.630 0.00 0.00 39.68 3.91
136 145 9.643693 AGCATAAATTTTATTCTTCACCAACAG 57.356 29.630 0.00 0.00 0.00 3.16
137 146 8.382875 GCATAAATTTTATTCTTCACCAACAGC 58.617 33.333 0.00 0.00 0.00 4.40
158 167 2.946990 CCTGGTTTCTGTTTTACGGTGT 59.053 45.455 0.00 0.00 0.00 4.16
159 168 3.242936 CCTGGTTTCTGTTTTACGGTGTG 60.243 47.826 0.00 0.00 0.00 3.82
160 169 3.607741 TGGTTTCTGTTTTACGGTGTGA 58.392 40.909 0.00 0.00 0.00 3.58
172 181 1.823899 GGTGTGATTGGATCGGGCC 60.824 63.158 0.00 0.00 0.00 5.80
176 185 0.320374 GTGATTGGATCGGGCCGATA 59.680 55.000 38.89 25.42 47.00 2.92
180 189 0.037697 TTGGATCGGGCCGATAATCG 60.038 55.000 38.89 6.02 47.00 3.34
196 205 2.945510 TCGCGGGCCGAATATAGTA 58.054 52.632 33.44 1.16 44.21 1.82
197 206 0.806868 TCGCGGGCCGAATATAGTAG 59.193 55.000 33.44 8.19 44.21 2.57
198 207 0.524862 CGCGGGCCGAATATAGTAGT 59.475 55.000 33.44 0.00 40.02 2.73
213 222 3.904136 AGTAGTGTGCATTTGCTTGAC 57.096 42.857 3.94 0.00 42.66 3.18
215 224 4.641396 AGTAGTGTGCATTTGCTTGACTA 58.359 39.130 3.94 4.83 42.66 2.59
218 227 5.458041 AGTGTGCATTTGCTTGACTAAAT 57.542 34.783 3.94 0.00 42.66 1.40
227 236 7.361713 GCATTTGCTTGACTAAATACTACACCA 60.362 37.037 0.00 0.00 38.21 4.17
229 238 8.453238 TTTGCTTGACTAAATACTACACCAAA 57.547 30.769 0.00 0.00 0.00 3.28
232 241 9.378551 TGCTTGACTAAATACTACACCAAATAG 57.621 33.333 0.00 0.00 0.00 1.73
233 242 9.379791 GCTTGACTAAATACTACACCAAATAGT 57.620 33.333 0.00 0.00 36.79 2.12
292 301 0.963962 ATTTGTTCCACTGCTGCCTG 59.036 50.000 0.00 0.00 0.00 4.85
307 316 0.385974 GCCTGTTTGCTGCAAGTACG 60.386 55.000 15.39 8.21 35.30 3.67
309 318 2.139917 CCTGTTTGCTGCAAGTACGTA 58.860 47.619 15.39 0.00 35.30 3.57
313 322 3.562141 TGTTTGCTGCAAGTACGTACATT 59.438 39.130 26.55 14.89 35.30 2.71
314 323 4.148891 GTTTGCTGCAAGTACGTACATTC 58.851 43.478 26.55 10.92 35.30 2.67
315 324 2.343101 TGCTGCAAGTACGTACATTCC 58.657 47.619 26.55 12.43 35.30 3.01
316 325 2.289133 TGCTGCAAGTACGTACATTCCA 60.289 45.455 26.55 15.85 35.30 3.53
317 326 2.348666 GCTGCAAGTACGTACATTCCAG 59.651 50.000 26.55 23.31 35.30 3.86
318 327 3.585862 CTGCAAGTACGTACATTCCAGT 58.414 45.455 26.55 1.93 0.00 4.00
319 328 3.994392 CTGCAAGTACGTACATTCCAGTT 59.006 43.478 26.55 8.27 0.00 3.16
320 329 4.382291 TGCAAGTACGTACATTCCAGTTT 58.618 39.130 26.55 7.55 0.00 2.66
321 330 4.817464 TGCAAGTACGTACATTCCAGTTTT 59.183 37.500 26.55 6.84 0.00 2.43
322 331 5.049954 TGCAAGTACGTACATTCCAGTTTTC 60.050 40.000 26.55 5.75 0.00 2.29
323 332 5.616204 GCAAGTACGTACATTCCAGTTTTCC 60.616 44.000 26.55 0.00 0.00 3.13
324 333 5.479124 AGTACGTACATTCCAGTTTTCCT 57.521 39.130 26.55 0.00 0.00 3.36
325 334 5.235516 AGTACGTACATTCCAGTTTTCCTG 58.764 41.667 26.55 0.00 41.15 3.86
326 335 4.081322 ACGTACATTCCAGTTTTCCTGT 57.919 40.909 0.00 0.00 39.74 4.00
327 336 5.217978 ACGTACATTCCAGTTTTCCTGTA 57.782 39.130 0.00 0.00 39.74 2.74
328 337 5.801380 ACGTACATTCCAGTTTTCCTGTAT 58.199 37.500 0.00 0.00 39.74 2.29
329 338 6.938507 ACGTACATTCCAGTTTTCCTGTATA 58.061 36.000 0.00 0.00 39.74 1.47
330 339 6.815142 ACGTACATTCCAGTTTTCCTGTATAC 59.185 38.462 0.00 0.00 39.74 1.47
343 352 8.316946 GTTTTCCTGTATACAACTAACCCTAGT 58.683 37.037 7.06 0.00 40.25 2.57
378 387 3.320610 TGGTCAATCCAAACCCTTTCA 57.679 42.857 0.00 0.00 44.12 2.69
384 393 6.661805 GGTCAATCCAAACCCTTTCAATAGTA 59.338 38.462 0.00 0.00 35.97 1.82
396 405 9.816787 ACCCTTTCAATAGTATTTTTCCACTAA 57.183 29.630 0.00 0.00 0.00 2.24
429 440 4.832266 AGCGATCTATGAGAATCTCCAGTT 59.168 41.667 7.91 0.57 34.92 3.16
442 453 3.976015 TCTCCAGTTCACCAAAACCTTT 58.024 40.909 0.00 0.00 0.00 3.11
463 474 6.348540 CCTTTCTTTTCCGGAGTATGTTTGAG 60.349 42.308 3.34 0.00 0.00 3.02
464 475 4.000988 TCTTTTCCGGAGTATGTTTGAGC 58.999 43.478 3.34 0.00 0.00 4.26
466 477 2.380084 TCCGGAGTATGTTTGAGCAC 57.620 50.000 0.00 0.00 0.00 4.40
566 577 2.203938 TCTCCTCCTTTGGCCCGT 60.204 61.111 0.00 0.00 0.00 5.28
615 641 0.176910 CGCTCCTCCCCTTTCTTCTC 59.823 60.000 0.00 0.00 0.00 2.87
650 688 1.300775 CAGCTCCTCGCATAGCCAG 60.301 63.158 0.00 0.00 42.61 4.85
834 895 1.085091 GTTCTGAGGTACGAGCTCGA 58.915 55.000 40.58 21.98 45.17 4.04
835 896 1.671845 GTTCTGAGGTACGAGCTCGAT 59.328 52.381 40.58 26.02 45.17 3.59
841 902 2.812591 GAGGTACGAGCTCGATTCCATA 59.187 50.000 40.58 19.53 43.02 2.74
844 905 0.674534 ACGAGCTCGATTCCATACCC 59.325 55.000 40.58 0.00 43.02 3.69
845 906 0.038159 CGAGCTCGATTCCATACCCC 60.038 60.000 32.06 0.00 43.02 4.95
848 909 1.671742 CTCGATTCCATACCCCCGG 59.328 63.158 0.00 0.00 0.00 5.73
864 925 1.674322 CGGTGGCCCTCGTGATTTT 60.674 57.895 0.00 0.00 0.00 1.82
865 926 1.644786 CGGTGGCCCTCGTGATTTTC 61.645 60.000 0.00 0.00 0.00 2.29
866 927 0.322546 GGTGGCCCTCGTGATTTTCT 60.323 55.000 0.00 0.00 0.00 2.52
869 930 1.032114 GGCCCTCGTGATTTTCTGGG 61.032 60.000 0.00 0.00 37.76 4.45
870 931 2.482326 CCCTCGTGATTTTCTGGGC 58.518 57.895 0.00 0.00 0.00 5.36
871 932 1.369091 CCCTCGTGATTTTCTGGGCG 61.369 60.000 0.00 0.00 0.00 6.13
872 933 1.425428 CTCGTGATTTTCTGGGCGC 59.575 57.895 0.00 0.00 0.00 6.53
873 934 1.298157 CTCGTGATTTTCTGGGCGCA 61.298 55.000 10.83 2.47 0.00 6.09
874 935 1.154225 CGTGATTTTCTGGGCGCAC 60.154 57.895 10.83 6.04 0.00 5.34
880 941 4.680237 TTCTGGGCGCACCGTCTG 62.680 66.667 7.46 0.00 44.64 3.51
914 975 2.283173 CACCCCCAGGCTTGGTTC 60.283 66.667 14.60 0.00 43.40 3.62
915 976 2.780924 ACCCCCAGGCTTGGTTCA 60.781 61.111 14.60 0.00 43.40 3.18
916 977 2.283173 CCCCCAGGCTTGGTTCAC 60.283 66.667 14.60 0.00 43.40 3.18
917 978 2.283173 CCCCAGGCTTGGTTCACC 60.283 66.667 14.60 0.00 43.40 4.02
919 980 2.672996 CCAGGCTTGGTTCACCGG 60.673 66.667 6.72 0.00 39.79 5.28
920 981 2.672996 CAGGCTTGGTTCACCGGG 60.673 66.667 6.32 0.00 39.43 5.73
924 993 2.115266 CTTGGTTCACCGGGCCTT 59.885 61.111 6.32 0.00 39.43 4.35
944 1013 4.806339 AGGGAGAGCGGAAGGGGG 62.806 72.222 0.00 0.00 0.00 5.40
959 1028 4.153330 GGGCGGAGGAGGGGACTA 62.153 72.222 0.00 0.00 44.43 2.59
962 1031 2.198980 CGGAGGAGGGGACTAGGG 59.801 72.222 0.00 0.00 44.43 3.53
963 1032 2.122769 GGAGGAGGGGACTAGGGC 60.123 72.222 0.00 0.00 44.43 5.19
964 1033 2.122769 GAGGAGGGGACTAGGGCC 60.123 72.222 0.00 0.00 44.43 5.80
967 1036 4.153330 GAGGGGACTAGGGCCGGA 62.153 72.222 5.05 0.00 44.43 5.14
968 1037 3.691297 GAGGGGACTAGGGCCGGAA 62.691 68.421 5.05 0.00 44.43 4.30
969 1038 3.162154 GGGGACTAGGGCCGGAAG 61.162 72.222 5.05 0.00 0.00 3.46
970 1039 2.042230 GGGACTAGGGCCGGAAGA 60.042 66.667 5.05 0.00 0.00 2.87
971 1040 1.688187 GGGACTAGGGCCGGAAGAA 60.688 63.158 5.05 0.00 0.00 2.52
972 1041 1.054978 GGGACTAGGGCCGGAAGAAT 61.055 60.000 5.05 0.00 0.00 2.40
973 1042 0.393448 GGACTAGGGCCGGAAGAATC 59.607 60.000 5.05 0.00 0.00 2.52
974 1043 1.120530 GACTAGGGCCGGAAGAATCA 58.879 55.000 5.05 0.00 0.00 2.57
975 1044 1.069358 GACTAGGGCCGGAAGAATCAG 59.931 57.143 5.05 0.00 0.00 2.90
977 1046 1.054406 TAGGGCCGGAAGAATCAGGG 61.054 60.000 5.05 0.00 40.84 4.45
978 1047 2.375345 GGGCCGGAAGAATCAGGGA 61.375 63.158 5.05 0.00 40.84 4.20
979 1048 1.147153 GGCCGGAAGAATCAGGGAG 59.853 63.158 5.05 0.00 40.84 4.30
980 1049 1.524849 GCCGGAAGAATCAGGGAGC 60.525 63.158 5.05 0.00 40.84 4.70
981 1050 1.227380 CCGGAAGAATCAGGGAGCG 60.227 63.158 0.00 0.00 37.27 5.03
982 1051 1.884926 CGGAAGAATCAGGGAGCGC 60.885 63.158 0.00 0.00 0.00 5.92
983 1052 1.524849 GGAAGAATCAGGGAGCGCC 60.525 63.158 2.29 0.00 0.00 6.53
984 1053 1.884926 GAAGAATCAGGGAGCGCCG 60.885 63.158 2.29 0.00 33.83 6.46
985 1054 3.391665 AAGAATCAGGGAGCGCCGG 62.392 63.158 2.29 0.00 33.83 6.13
1083 1152 7.497595 TCATTTCACAACTGACTAACACTACT 58.502 34.615 0.00 0.00 0.00 2.57
1085 1154 7.534085 TTTCACAACTGACTAACACTACTTG 57.466 36.000 0.00 0.00 0.00 3.16
1100 1169 2.607631 ACTTGTGCTTTGCTGCATTT 57.392 40.000 1.84 0.00 45.23 2.32
1101 1170 2.908916 ACTTGTGCTTTGCTGCATTTT 58.091 38.095 1.84 0.00 45.23 1.82
1102 1171 2.867975 ACTTGTGCTTTGCTGCATTTTC 59.132 40.909 1.84 0.00 45.23 2.29
1103 1172 1.868469 TGTGCTTTGCTGCATTTTCC 58.132 45.000 1.84 0.00 45.23 3.13
1104 1173 1.413445 TGTGCTTTGCTGCATTTTCCT 59.587 42.857 1.84 0.00 45.23 3.36
1105 1174 1.796459 GTGCTTTGCTGCATTTTCCTG 59.204 47.619 1.84 0.00 45.23 3.86
1106 1175 0.794473 GCTTTGCTGCATTTTCCTGC 59.206 50.000 1.84 0.00 42.62 4.85
1107 1176 1.607251 GCTTTGCTGCATTTTCCTGCT 60.607 47.619 1.84 0.00 42.75 4.24
1108 1177 2.762745 CTTTGCTGCATTTTCCTGCTT 58.237 42.857 1.84 0.00 42.75 3.91
1109 1178 2.443887 TTGCTGCATTTTCCTGCTTC 57.556 45.000 1.84 0.00 42.75 3.86
1110 1179 1.330234 TGCTGCATTTTCCTGCTTCA 58.670 45.000 0.00 0.00 42.75 3.02
1111 1180 1.897133 TGCTGCATTTTCCTGCTTCAT 59.103 42.857 0.00 0.00 42.75 2.57
1112 1181 2.268298 GCTGCATTTTCCTGCTTCATG 58.732 47.619 0.00 0.00 42.75 3.07
1113 1182 2.353406 GCTGCATTTTCCTGCTTCATGT 60.353 45.455 0.00 0.00 42.75 3.21
1114 1183 3.508762 CTGCATTTTCCTGCTTCATGTC 58.491 45.455 0.00 0.00 42.75 3.06
1115 1184 3.159472 TGCATTTTCCTGCTTCATGTCT 58.841 40.909 0.00 0.00 42.75 3.41
1116 1185 3.192001 TGCATTTTCCTGCTTCATGTCTC 59.808 43.478 0.00 0.00 42.75 3.36
1117 1186 3.442977 GCATTTTCCTGCTTCATGTCTCT 59.557 43.478 0.00 0.00 39.12 3.10
1118 1187 4.438472 GCATTTTCCTGCTTCATGTCTCTC 60.438 45.833 0.00 0.00 39.12 3.20
1119 1188 4.630644 TTTTCCTGCTTCATGTCTCTCT 57.369 40.909 0.00 0.00 0.00 3.10
1120 1189 3.606595 TTCCTGCTTCATGTCTCTCTG 57.393 47.619 0.00 0.00 0.00 3.35
1121 1190 2.812658 TCCTGCTTCATGTCTCTCTGA 58.187 47.619 0.00 0.00 0.00 3.27
1122 1191 3.372897 TCCTGCTTCATGTCTCTCTGAT 58.627 45.455 0.00 0.00 0.00 2.90
1123 1192 4.540715 TCCTGCTTCATGTCTCTCTGATA 58.459 43.478 0.00 0.00 0.00 2.15
1124 1193 5.146298 TCCTGCTTCATGTCTCTCTGATAT 58.854 41.667 0.00 0.00 0.00 1.63
1125 1194 5.601729 TCCTGCTTCATGTCTCTCTGATATT 59.398 40.000 0.00 0.00 0.00 1.28
1126 1195 6.099413 TCCTGCTTCATGTCTCTCTGATATTT 59.901 38.462 0.00 0.00 0.00 1.40
1193 1263 5.393135 CGGTCTAGGTCAATATATCATGCGT 60.393 44.000 0.00 0.00 0.00 5.24
1232 1303 4.101942 TGTTGATGTTGAAACGCAAAGTC 58.898 39.130 3.75 0.00 38.44 3.01
1236 1307 1.135660 TGTTGAAACGCAAAGTCGCAA 60.136 42.857 0.00 0.00 38.44 4.85
1242 1313 2.010817 CGCAAAGTCGCAAGCAACC 61.011 57.895 0.00 0.00 37.18 3.77
1243 1314 1.661509 GCAAAGTCGCAAGCAACCC 60.662 57.895 0.00 0.00 37.18 4.11
1259 1330 7.750014 GCAAGCAACCCATATTTGTTATTTTTG 59.250 33.333 0.00 0.00 0.00 2.44
1271 1344 3.873952 TGTTATTTTTGCTTGTGGGTTGC 59.126 39.130 0.00 0.00 0.00 4.17
1289 1362 2.772739 CGGAGCAGACTTTGGATGG 58.227 57.895 0.00 0.00 0.00 3.51
1290 1363 0.745845 CGGAGCAGACTTTGGATGGG 60.746 60.000 0.00 0.00 0.00 4.00
1291 1364 0.620556 GGAGCAGACTTTGGATGGGA 59.379 55.000 0.00 0.00 0.00 4.37
1295 1368 2.027385 GCAGACTTTGGATGGGATTCC 58.973 52.381 0.00 0.00 36.24 3.01
1297 1370 3.879321 GCAGACTTTGGATGGGATTCCTT 60.879 47.826 2.01 0.00 36.68 3.36
1307 1380 4.526970 GATGGGATTCCTTGCTCTTGTTA 58.473 43.478 2.01 0.00 0.00 2.41
1308 1381 4.591321 TGGGATTCCTTGCTCTTGTTAT 57.409 40.909 2.01 0.00 0.00 1.89
1317 1390 4.543692 CTTGCTCTTGTTATGGCATATGC 58.456 43.478 19.79 19.79 41.14 3.14
1318 1391 3.824133 TGCTCTTGTTATGGCATATGCT 58.176 40.909 26.12 11.00 41.70 3.79
1350 1423 3.147553 TGGTAAGTGGTTGCTTGCATA 57.852 42.857 0.00 0.00 33.64 3.14
1378 1451 6.317893 TCGATGACTCATGTTGCTAGTAACTA 59.682 38.462 22.00 10.76 0.00 2.24
1402 1475 2.356535 GGTGCAGGTCCAGAATCTCATT 60.357 50.000 0.00 0.00 0.00 2.57
1551 1624 7.991174 TCTTTATCCTACTAGCTATGAGGTCT 58.009 38.462 16.78 10.49 0.00 3.85
1575 1648 7.552687 TCTCAGGATTGGTAAACAACATCATAC 59.447 37.037 0.00 0.00 42.94 2.39
1593 1668 7.944000 ACATCATACTTCATACATAATTGGCCA 59.056 33.333 0.00 0.00 0.00 5.36
1620 1695 3.493176 GCTGAAACTGTGGGCAATTTCTT 60.493 43.478 3.78 0.00 40.34 2.52
1682 1810 1.261619 CTCCAGTGTTGCGTCAAGAAC 59.738 52.381 0.00 0.00 0.00 3.01
1700 1828 7.928706 GTCAAGAACTGTTATATGATGGCTAGT 59.071 37.037 0.00 0.00 0.00 2.57
1863 1991 5.995282 TCCTTATGTATTTATGCCAACGGAG 59.005 40.000 0.00 0.00 0.00 4.63
2013 2141 7.812191 GGCAAATAACACAAACAAGACATCATA 59.188 33.333 0.00 0.00 0.00 2.15
2124 2267 9.764363 CATTAGCATGATAACAGACCTACTAAA 57.236 33.333 5.38 0.00 31.07 1.85
2125 2268 9.988815 ATTAGCATGATAACAGACCTACTAAAG 57.011 33.333 5.38 0.00 0.00 1.85
2126 2269 6.284459 AGCATGATAACAGACCTACTAAAGC 58.716 40.000 0.00 0.00 0.00 3.51
2127 2270 5.467063 GCATGATAACAGACCTACTAAAGCC 59.533 44.000 0.00 0.00 0.00 4.35
2128 2271 5.609533 TGATAACAGACCTACTAAAGCCC 57.390 43.478 0.00 0.00 0.00 5.19
2129 2272 5.278061 TGATAACAGACCTACTAAAGCCCT 58.722 41.667 0.00 0.00 0.00 5.19
2130 2273 3.983044 AACAGACCTACTAAAGCCCTG 57.017 47.619 0.00 0.00 32.55 4.45
2131 2274 2.903926 ACAGACCTACTAAAGCCCTGT 58.096 47.619 0.00 0.00 33.91 4.00
2132 2275 3.248888 ACAGACCTACTAAAGCCCTGTT 58.751 45.455 0.00 0.00 34.62 3.16
2133 2276 3.261137 ACAGACCTACTAAAGCCCTGTTC 59.739 47.826 0.00 0.00 34.62 3.18
2134 2277 2.496470 AGACCTACTAAAGCCCTGTTCG 59.504 50.000 0.00 0.00 0.00 3.95
2135 2278 1.553704 ACCTACTAAAGCCCTGTTCGG 59.446 52.381 0.00 0.00 0.00 4.30
2143 2286 4.208632 CCCTGTTCGGCAGTCATC 57.791 61.111 7.05 0.00 43.55 2.92
2144 2287 1.450312 CCCTGTTCGGCAGTCATCC 60.450 63.158 7.05 0.00 43.55 3.51
2145 2288 1.296392 CCTGTTCGGCAGTCATCCA 59.704 57.895 7.05 0.00 43.55 3.41
2146 2289 0.742281 CCTGTTCGGCAGTCATCCAG 60.742 60.000 7.05 0.00 43.55 3.86
2147 2290 1.364626 CTGTTCGGCAGTCATCCAGC 61.365 60.000 0.00 0.00 40.27 4.85
2148 2291 1.078848 GTTCGGCAGTCATCCAGCT 60.079 57.895 0.00 0.00 0.00 4.24
2149 2292 1.086634 GTTCGGCAGTCATCCAGCTC 61.087 60.000 0.00 0.00 0.00 4.09
2150 2293 2.202987 CGGCAGTCATCCAGCTCC 60.203 66.667 0.00 0.00 0.00 4.70
2151 2294 2.993008 GGCAGTCATCCAGCTCCA 59.007 61.111 0.00 0.00 0.00 3.86
2152 2295 1.530771 GGCAGTCATCCAGCTCCAT 59.469 57.895 0.00 0.00 0.00 3.41
2153 2296 0.818445 GGCAGTCATCCAGCTCCATG 60.818 60.000 0.00 0.00 0.00 3.66
2154 2297 0.818445 GCAGTCATCCAGCTCCATGG 60.818 60.000 4.97 4.97 42.11 3.66
2164 2307 4.147449 CTCCATGGAGCGCACGGA 62.147 66.667 28.45 4.86 35.31 4.69
2165 2308 4.147449 TCCATGGAGCGCACGGAG 62.147 66.667 11.44 0.00 0.00 4.63
2183 2326 4.452733 CGACCCTTCGGCCACTCC 62.453 72.222 2.24 0.00 41.89 3.85
2194 2337 1.954927 GGCCACTCCGAGAAAATAGG 58.045 55.000 1.33 0.00 0.00 2.57
2195 2338 1.300481 GCCACTCCGAGAAAATAGGC 58.700 55.000 1.33 2.25 0.00 3.93
2196 2339 1.134371 GCCACTCCGAGAAAATAGGCT 60.134 52.381 1.33 0.00 37.89 4.58
2197 2340 2.555199 CCACTCCGAGAAAATAGGCTG 58.445 52.381 1.33 0.00 0.00 4.85
2198 2341 1.936547 CACTCCGAGAAAATAGGCTGC 59.063 52.381 1.33 0.00 0.00 5.25
2199 2342 1.212616 CTCCGAGAAAATAGGCTGCG 58.787 55.000 0.00 0.00 0.00 5.18
2200 2343 0.179084 TCCGAGAAAATAGGCTGCGG 60.179 55.000 0.00 0.00 38.68 5.69
2201 2344 1.643832 CGAGAAAATAGGCTGCGGC 59.356 57.895 9.72 9.72 37.82 6.53
2309 2452 2.024414 GGTGGAACTGGCATGGATAAC 58.976 52.381 0.00 0.00 36.74 1.89
2325 2468 3.626217 GGATAACATTCCCCGAACTTCAC 59.374 47.826 0.00 0.00 0.00 3.18
2343 2486 4.462508 TCACGAGCATTCTCTTTCATCT 57.537 40.909 0.00 0.00 37.19 2.90
2412 2555 7.823745 ATGAGTAAATTGTATGATTGGTCCC 57.176 36.000 0.00 0.00 0.00 4.46
2494 2641 7.433680 CCCCTAATGTGGAATAATTTGCTAAC 58.566 38.462 0.00 0.00 0.00 2.34
2538 2685 5.066375 TCTGTGTCTTCTTTTGTCAATGTGG 59.934 40.000 0.00 0.00 0.00 4.17
2540 2687 3.243035 TGTCTTCTTTTGTCAATGTGGCG 60.243 43.478 0.00 0.00 0.00 5.69
2562 2709 2.365617 CACCTGGTGGAAGATATAGCGT 59.634 50.000 19.23 0.00 37.04 5.07
2603 2751 2.649816 ACTGAAAACCCTTCTGGCCTAT 59.350 45.455 3.32 0.00 37.83 2.57
2640 2802 1.429463 CTTCTCTTTGACCCCGTTCG 58.571 55.000 0.00 0.00 0.00 3.95
2692 2854 5.894807 AGTGAATCAAACACTGTTTCCTTG 58.105 37.500 4.06 0.00 45.19 3.61
2890 3052 7.719633 GGATTAATTGGCCAGTTAACTGATCTA 59.280 37.037 32.50 20.76 46.59 1.98
2914 3077 6.088016 TCAGCAAATATTTGAACACTGCTT 57.912 33.333 28.33 3.09 40.55 3.91
2947 3110 4.516698 ACAATGGCTAGTGAAGTTTGAGTG 59.483 41.667 3.97 0.00 0.00 3.51
2948 3111 3.126001 TGGCTAGTGAAGTTTGAGTGG 57.874 47.619 0.00 0.00 0.00 4.00
2949 3112 2.703536 TGGCTAGTGAAGTTTGAGTGGA 59.296 45.455 0.00 0.00 0.00 4.02
2950 3113 3.135712 TGGCTAGTGAAGTTTGAGTGGAA 59.864 43.478 0.00 0.00 0.00 3.53
2951 3114 4.202461 TGGCTAGTGAAGTTTGAGTGGAAT 60.202 41.667 0.00 0.00 0.00 3.01
2952 3115 4.762251 GGCTAGTGAAGTTTGAGTGGAATT 59.238 41.667 0.00 0.00 0.00 2.17
2953 3116 5.335191 GGCTAGTGAAGTTTGAGTGGAATTG 60.335 44.000 0.00 0.00 0.00 2.32
2954 3117 4.574599 AGTGAAGTTTGAGTGGAATTGC 57.425 40.909 0.00 0.00 0.00 3.56
2955 3118 3.953612 AGTGAAGTTTGAGTGGAATTGCA 59.046 39.130 0.00 0.00 0.00 4.08
2956 3119 4.586001 AGTGAAGTTTGAGTGGAATTGCAT 59.414 37.500 1.94 0.00 0.00 3.96
2957 3120 4.919754 GTGAAGTTTGAGTGGAATTGCATC 59.080 41.667 1.94 2.96 0.00 3.91
2958 3121 4.022068 TGAAGTTTGAGTGGAATTGCATCC 60.022 41.667 1.94 0.00 40.10 3.51
3273 3453 6.154445 GTGACCGACTTTGTTCATAACTCTA 58.846 40.000 0.00 0.00 0.00 2.43
3278 3458 7.487189 ACCGACTTTGTTCATAACTCTATAACG 59.513 37.037 0.00 0.00 0.00 3.18
3314 3494 2.064762 GAGGCGACATCATAGACATGC 58.935 52.381 0.00 0.00 31.73 4.06
3365 3545 8.417884 AGATCACTACATAGAAAAACCTAGCTC 58.582 37.037 0.00 0.00 0.00 4.09
3385 3565 6.940739 AGCTCTGTATGACAAGTTGATAACT 58.059 36.000 10.54 0.00 45.46 2.24
3387 3567 8.531982 AGCTCTGTATGACAAGTTGATAACTAA 58.468 33.333 10.54 0.00 41.91 2.24
3436 3622 5.045505 TGACTATACCTTGTTGTTGGCCATA 60.046 40.000 6.09 0.00 0.00 2.74
3447 3633 2.290577 TGTTGGCCATATAGCACACACA 60.291 45.455 6.09 0.00 0.00 3.72
3509 3699 2.172505 TCAGTTCACAACTCCACATGGT 59.827 45.455 0.00 0.00 40.46 3.55
3588 3778 6.017026 TGCTCACAGATATACTAGCAGTACAC 60.017 42.308 0.00 0.00 34.19 2.90
3627 3817 6.982724 AGCAAGATTAAATAATCAAAGCCAGC 59.017 34.615 13.94 7.64 43.43 4.85
3629 3819 7.440255 GCAAGATTAAATAATCAAAGCCAGCAT 59.560 33.333 13.94 0.00 43.43 3.79
3704 3999 2.526432 ACATGTACGGAACAGAGGAGT 58.474 47.619 0.00 0.00 42.70 3.85
3709 4004 3.133362 TGTACGGAACAGAGGAGTTTTGT 59.867 43.478 0.00 0.00 33.01 2.83
3714 4009 4.570930 GGAACAGAGGAGTTTTGTAGAGG 58.429 47.826 0.00 0.00 0.00 3.69
3732 4027 2.670414 GAGGAAGAAACAGAGCACATCG 59.330 50.000 0.00 0.00 0.00 3.84
3748 4045 2.580155 ATCGCAGCAGAGGAGGAGGA 62.580 60.000 0.00 0.00 0.00 3.71
3749 4046 2.784356 CGCAGCAGAGGAGGAGGAG 61.784 68.421 0.00 0.00 0.00 3.69
3750 4047 2.433994 GCAGCAGAGGAGGAGGAGG 61.434 68.421 0.00 0.00 0.00 4.30
3751 4048 1.761667 CAGCAGAGGAGGAGGAGGG 60.762 68.421 0.00 0.00 0.00 4.30
3754 4051 1.074623 CAGAGGAGGAGGAGGGCAT 60.075 63.158 0.00 0.00 0.00 4.40
3755 4052 1.120795 CAGAGGAGGAGGAGGGCATC 61.121 65.000 0.00 0.00 0.00 3.91
3756 4053 2.123077 AGGAGGAGGAGGGCATCG 60.123 66.667 0.00 0.00 0.00 3.84
3757 4054 2.444895 GGAGGAGGAGGGCATCGT 60.445 66.667 0.00 0.00 0.00 3.73
3797 4094 3.093172 GGGGAGGAAGAGGCAGGG 61.093 72.222 0.00 0.00 0.00 4.45
3798 4095 2.041265 GGGAGGAAGAGGCAGGGA 59.959 66.667 0.00 0.00 0.00 4.20
3799 4096 2.069430 GGGAGGAAGAGGCAGGGAG 61.069 68.421 0.00 0.00 0.00 4.30
3804 4101 0.829990 GGAAGAGGCAGGGAGAAGAG 59.170 60.000 0.00 0.00 0.00 2.85
3805 4102 1.621072 GGAAGAGGCAGGGAGAAGAGA 60.621 57.143 0.00 0.00 0.00 3.10
3806 4103 1.756538 GAAGAGGCAGGGAGAAGAGAG 59.243 57.143 0.00 0.00 0.00 3.20
3808 4105 1.002792 AGGCAGGGAGAAGAGAGGG 59.997 63.158 0.00 0.00 0.00 4.30
3810 4107 1.002274 GCAGGGAGAAGAGAGGGGA 59.998 63.158 0.00 0.00 0.00 4.81
3837 4134 1.003573 AGGAGGGAGGGGTAGCTTG 59.996 63.158 0.00 0.00 0.00 4.01
3992 4289 2.125106 GACGGGAAGATGCGCCTT 60.125 61.111 4.18 0.62 0.00 4.35
4000 4297 1.888436 AAGATGCGCCTTCGACCTGA 61.888 55.000 4.18 0.00 38.10 3.86
4027 4324 0.268869 AGGAGCTGTATGGGGGATGA 59.731 55.000 0.00 0.00 0.00 2.92
4040 4337 1.599240 GGATGATGGGAAGAGGCGC 60.599 63.158 0.00 0.00 0.00 6.53
4095 4404 3.304829 GGTGGCCTATTCTCTCTCTCTT 58.695 50.000 3.32 0.00 0.00 2.85
4116 4447 4.190370 TGGATCAGAGAGAAGCCTGATA 57.810 45.455 0.00 0.00 46.64 2.15
4120 4451 1.339610 CAGAGAGAAGCCTGATACCCG 59.660 57.143 0.00 0.00 32.37 5.28
4125 4456 2.942648 GAAGCCTGATACCCGCCCAC 62.943 65.000 0.00 0.00 0.00 4.61
4130 4461 1.755393 CTGATACCCGCCCACCCTAC 61.755 65.000 0.00 0.00 0.00 3.18
4137 4468 0.549469 CCGCCCACCCTACCTATTTT 59.451 55.000 0.00 0.00 0.00 1.82
4507 4838 1.371183 CTCCAACCTCGCCACTTCA 59.629 57.895 0.00 0.00 0.00 3.02
4516 4847 2.053627 CTCGCCACTTCAATTGCAAAC 58.946 47.619 1.71 0.00 0.00 2.93
4521 4852 2.224113 CCACTTCAATTGCAAACAGGCT 60.224 45.455 1.71 0.00 34.04 4.58
4537 4868 3.861341 GCTCCATGCCTCTGTAACA 57.139 52.632 0.00 0.00 35.15 2.41
4548 4879 2.234661 CCTCTGTAACAGATGCCACAGA 59.765 50.000 13.43 13.43 43.77 3.41
4561 4892 2.495270 TGCCACAGACATGTTTTGTTGT 59.505 40.909 12.62 5.08 39.18 3.32
4568 4899 4.023291 AGACATGTTTTGTTGTGAGGGTT 58.977 39.130 0.00 0.00 39.18 4.11
4596 4928 3.953775 CCTTGACGGGGCCACAGT 61.954 66.667 5.46 3.44 0.00 3.55
4643 4975 2.584835 TGGGGATGCCATAATGCTAC 57.415 50.000 5.30 0.00 0.00 3.58
4665 5004 6.982160 ACGATTATGGGTGGTATGTAACTA 57.018 37.500 0.00 0.00 0.00 2.24
4811 5162 3.569210 TGGCACACCAGGGACCTG 61.569 66.667 11.44 11.44 42.67 4.00
4843 5194 1.583611 TGGGGGTACATGGACCTAGAT 59.416 52.381 26.54 0.00 39.66 1.98
4854 5205 1.625508 GGACCTAGATGAACCACCCCT 60.626 57.143 0.00 0.00 0.00 4.79
4902 5253 4.377021 TGCACTCTTCGTAGAAATGTGTT 58.623 39.130 10.26 0.00 45.90 3.32
4909 5260 8.674607 ACTCTTCGTAGAAATGTGTTTTTCTTT 58.325 29.630 4.91 0.00 41.95 2.52
4923 5275 9.698309 TGTGTTTTTCTTTTGTTGTTATTCTCA 57.302 25.926 0.00 0.00 0.00 3.27
4996 5348 5.238650 TGAGGAAGAGAACCGTGAATTTTTC 59.761 40.000 0.00 0.00 0.00 2.29
5119 5471 3.262151 GGATCCCTTCTATGCCTCTTACC 59.738 52.174 0.00 0.00 0.00 2.85
5152 5504 6.429692 CCAACTCCACAACATGTAAGACATTA 59.570 38.462 0.00 0.00 36.53 1.90
5178 5531 4.447138 TTCCCAGCTTTGGAGTTTTCTA 57.553 40.909 2.16 0.00 32.37 2.10
5185 5538 5.705441 CAGCTTTGGAGTTTTCTATGGTGTA 59.295 40.000 0.00 0.00 0.00 2.90
5188 5541 6.509418 TTTGGAGTTTTCTATGGTGTATGC 57.491 37.500 0.00 0.00 0.00 3.14
5259 5612 9.801873 AGTAACGTAGAAACAAGTACAAAGTAA 57.198 29.630 0.00 0.00 0.00 2.24
5375 5728 5.163683 ACTGTATTGACTTGCTGATCAATGC 60.164 40.000 15.70 14.88 43.66 3.56
5545 5898 8.519526 GTGATCAGTCAATTTATGGTGGTAAAA 58.480 33.333 0.00 0.00 35.80 1.52
5562 5915 3.982576 AAAAACATTCACGGTCCTCAC 57.017 42.857 0.00 0.00 0.00 3.51
5619 5972 2.421751 AGAATGCATCTGCTCTGCTT 57.578 45.000 0.00 0.00 42.66 3.91
5794 6147 3.829948 CAACCACTGAATGATGCACTTC 58.170 45.455 0.00 0.00 0.00 3.01
5921 6274 4.281941 GGGAGAGAGTTTTCCATTGCTTTT 59.718 41.667 0.00 0.00 35.09 2.27
5948 6301 5.356882 TCTTATTTGAGCACCTTTTCACG 57.643 39.130 0.00 0.00 0.00 4.35
5970 6323 4.208460 CGTAAAGTCCATTGGCTGTATACG 59.792 45.833 16.30 16.30 0.00 3.06
6034 6387 4.853468 TTATGGCAGGTCACCATTTCTA 57.147 40.909 0.00 0.00 45.86 2.10
6037 6390 2.846206 TGGCAGGTCACCATTTCTATCT 59.154 45.455 0.00 0.00 30.29 1.98
6097 6450 7.556275 GGAGAACATACAGGTAATCCATTTTCA 59.444 37.037 0.00 0.00 35.89 2.69
6149 6502 1.720805 TATATTAGCGCATGCCACCG 58.279 50.000 13.15 0.00 44.31 4.94
6150 6503 0.250295 ATATTAGCGCATGCCACCGT 60.250 50.000 13.15 0.00 44.31 4.83
6153 6506 2.796483 TTAGCGCATGCCACCGTCTT 62.796 55.000 13.15 0.00 44.31 3.01
6179 6549 5.828328 ACTTTTTCGAAAATTGAGAGGACCT 59.172 36.000 23.05 0.00 0.00 3.85
6183 6553 3.071023 TCGAAAATTGAGAGGACCTGTGT 59.929 43.478 0.00 0.00 0.00 3.72
6184 6554 4.282449 TCGAAAATTGAGAGGACCTGTGTA 59.718 41.667 0.00 0.00 0.00 2.90
6217 6587 3.515901 GCAGGAGAAGAAAAGGTCCTCTA 59.484 47.826 0.00 0.00 37.32 2.43
6237 6607 0.108662 GCATTAGTTTGGTGCCTGCC 60.109 55.000 0.00 0.00 32.88 4.85
6430 6807 5.228665 GGCTTCTTGTAGTTACTTCTCGTT 58.771 41.667 0.00 0.00 0.00 3.85
6452 6829 6.537566 GTTTACTAATGTCTCATGCTGTGTG 58.462 40.000 0.00 0.00 0.00 3.82
6476 6853 4.880537 CTGAGCAGCTACCCGCCG 62.881 72.222 0.00 0.00 40.39 6.46
6507 6884 5.587844 ACATATTCATGGAGAACTTGAGCAC 59.412 40.000 0.00 0.00 39.49 4.40
6537 6914 2.278332 AGCCTTTTCCCTTGTCAGTC 57.722 50.000 0.00 0.00 0.00 3.51
6560 6937 5.043903 CCCGATGTCTTGTAATGTAGAGTG 58.956 45.833 0.00 0.00 0.00 3.51
6563 6940 6.093404 CGATGTCTTGTAATGTAGAGTGTGT 58.907 40.000 0.00 0.00 0.00 3.72
6565 6942 6.156748 TGTCTTGTAATGTAGAGTGTGTGT 57.843 37.500 0.00 0.00 0.00 3.72
6567 6944 7.718525 TGTCTTGTAATGTAGAGTGTGTGTTA 58.281 34.615 0.00 0.00 0.00 2.41
6709 7086 9.520204 CTGTGATATTAAATTTGCTGGGTTAAG 57.480 33.333 0.00 0.00 0.00 1.85
6781 7170 5.183904 AGTGAGAGTTTAATTTGTGATGGCC 59.816 40.000 0.00 0.00 0.00 5.36
6784 7173 6.889177 TGAGAGTTTAATTTGTGATGGCCATA 59.111 34.615 20.84 2.08 0.00 2.74
6790 7179 3.998913 TTTGTGATGGCCATAGTCAGA 57.001 42.857 20.84 9.65 0.00 3.27
6791 7180 4.508551 TTTGTGATGGCCATAGTCAGAT 57.491 40.909 20.84 0.00 0.00 2.90
6795 7184 4.281941 TGTGATGGCCATAGTCAGATACTC 59.718 45.833 20.84 2.49 39.80 2.59
6798 7187 3.234353 TGGCCATAGTCAGATACTCAGG 58.766 50.000 0.00 0.00 39.80 3.86
6819 7208 6.150976 TCAGGATGAACATACATTGGTTTCAC 59.849 38.462 0.00 0.00 45.97 3.18
6820 7209 5.123820 AGGATGAACATACATTGGTTTCACG 59.876 40.000 0.00 0.00 0.00 4.35
6821 7210 4.153958 TGAACATACATTGGTTTCACGC 57.846 40.909 0.00 0.00 0.00 5.34
6822 7211 2.892373 ACATACATTGGTTTCACGCG 57.108 45.000 3.53 3.53 0.00 6.01
6823 7212 2.418692 ACATACATTGGTTTCACGCGA 58.581 42.857 15.93 0.00 0.00 5.87
6824 7213 3.006940 ACATACATTGGTTTCACGCGAT 58.993 40.909 15.93 0.00 0.00 4.58
6825 7214 4.185394 ACATACATTGGTTTCACGCGATA 58.815 39.130 15.93 0.00 0.00 2.92
6826 7215 4.033587 ACATACATTGGTTTCACGCGATAC 59.966 41.667 15.93 4.52 0.00 2.24
6827 7216 2.418692 ACATTGGTTTCACGCGATACA 58.581 42.857 15.93 0.00 0.00 2.29
6828 7217 3.006940 ACATTGGTTTCACGCGATACAT 58.993 40.909 15.93 0.00 0.00 2.29
6829 7218 3.438781 ACATTGGTTTCACGCGATACATT 59.561 39.130 15.93 0.00 0.00 2.71
6830 7219 3.463533 TTGGTTTCACGCGATACATTG 57.536 42.857 15.93 0.00 0.00 2.82
6831 7220 2.418692 TGGTTTCACGCGATACATTGT 58.581 42.857 15.93 0.00 0.00 2.71
6832 7221 3.586892 TGGTTTCACGCGATACATTGTA 58.413 40.909 15.93 0.00 0.00 2.41
6833 7222 3.995048 TGGTTTCACGCGATACATTGTAA 59.005 39.130 15.93 0.00 0.00 2.41
6834 7223 4.632251 TGGTTTCACGCGATACATTGTAAT 59.368 37.500 15.93 0.00 0.00 1.89
6835 7224 5.195379 GGTTTCACGCGATACATTGTAATC 58.805 41.667 15.93 0.00 0.00 1.75
6836 7225 5.006358 GGTTTCACGCGATACATTGTAATCT 59.994 40.000 15.93 0.00 0.00 2.40
6837 7226 5.635549 TTCACGCGATACATTGTAATCTG 57.364 39.130 15.93 0.00 0.00 2.90
6838 7227 4.927422 TCACGCGATACATTGTAATCTGA 58.073 39.130 15.93 0.00 0.00 3.27
6843 7236 4.507756 GCGATACATTGTAATCTGAGTGCA 59.492 41.667 0.00 0.00 0.00 4.57
6845 7238 6.643845 CGATACATTGTAATCTGAGTGCAAG 58.356 40.000 13.50 8.62 0.00 4.01
6849 7242 6.000219 ACATTGTAATCTGAGTGCAAGAACT 59.000 36.000 13.50 0.00 0.00 3.01
6859 7252 2.816087 AGTGCAAGAACTCGCATGAATT 59.184 40.909 0.00 0.00 40.89 2.17
6861 7254 3.605486 GTGCAAGAACTCGCATGAATTTC 59.395 43.478 0.00 0.00 40.89 2.17
6871 7264 4.366586 TCGCATGAATTTCTTGCAAACAA 58.633 34.783 27.03 11.22 44.74 2.83
6881 7274 2.908634 CTTGCAAACAAGCACTAGACG 58.091 47.619 0.00 0.00 46.38 4.18
6882 7275 1.948104 TGCAAACAAGCACTAGACGT 58.052 45.000 0.00 0.00 40.11 4.34
6886 7279 3.362693 GCAAACAAGCACTAGACGTACAC 60.363 47.826 0.00 0.00 0.00 2.90
6890 7283 1.747709 AGCACTAGACGTACACGGAT 58.252 50.000 6.72 0.00 44.95 4.18
6891 7284 1.400846 AGCACTAGACGTACACGGATG 59.599 52.381 6.72 0.00 44.95 3.51
6897 7290 4.937620 ACTAGACGTACACGGATGAACTTA 59.062 41.667 6.72 0.00 44.95 2.24
6898 7291 4.088823 AGACGTACACGGATGAACTTAC 57.911 45.455 6.72 0.00 44.95 2.34
6900 7293 4.217118 AGACGTACACGGATGAACTTACTT 59.783 41.667 6.72 0.00 44.95 2.24
6904 7297 6.074142 ACGTACACGGATGAACTTACTTTTTC 60.074 38.462 6.72 0.00 44.95 2.29
6906 7299 6.937436 ACACGGATGAACTTACTTTTTCTT 57.063 33.333 0.00 0.00 0.00 2.52
6907 7300 6.956047 ACACGGATGAACTTACTTTTTCTTC 58.044 36.000 0.00 0.00 0.00 2.87
6910 7303 6.427242 ACGGATGAACTTACTTTTTCTTCCTC 59.573 38.462 12.05 0.00 41.04 3.71
6913 7306 8.293157 GGATGAACTTACTTTTTCTTCCTCAAG 58.707 37.037 8.34 0.00 40.48 3.02
6932 7325 6.769822 CCTCAAGATCCTAATACACTGCAAAT 59.230 38.462 0.00 0.00 0.00 2.32
6946 7339 6.804677 ACACTGCAAATAATTTCTTGACACA 58.195 32.000 3.96 0.00 0.00 3.72
6949 7342 8.602328 CACTGCAAATAATTTCTTGACACAAAA 58.398 29.630 3.96 0.00 0.00 2.44
6999 7392 5.774498 AGAAAAACAGAGGGAATTGTGAC 57.226 39.130 0.00 0.00 0.00 3.67
7014 7407 7.040409 GGGAATTGTGACTCTAACAGATTGTTT 60.040 37.037 0.00 0.00 41.45 2.83
7016 7409 9.387123 GAATTGTGACTCTAACAGATTGTTTTC 57.613 33.333 0.00 0.00 41.45 2.29
7025 7418 3.207778 ACAGATTGTTTTCCCGTCGAAA 58.792 40.909 0.00 0.00 38.74 3.46
7060 7453 7.981789 ACGATAGAATCAACACATGTATCAGTT 59.018 33.333 0.00 0.00 41.38 3.16
7141 7538 2.417339 TGTACTCGTCAGACAGCAAC 57.583 50.000 0.41 1.46 0.00 4.17
7142 7539 1.679153 TGTACTCGTCAGACAGCAACA 59.321 47.619 0.41 3.73 0.00 3.33
7143 7540 2.100087 TGTACTCGTCAGACAGCAACAA 59.900 45.455 0.41 0.00 0.00 2.83
7148 7545 2.543848 TCGTCAGACAGCAACAATTCAC 59.456 45.455 0.41 0.00 0.00 3.18
7150 7547 3.363378 CGTCAGACAGCAACAATTCACTC 60.363 47.826 0.41 0.00 0.00 3.51
7151 7548 3.561310 GTCAGACAGCAACAATTCACTCA 59.439 43.478 0.00 0.00 0.00 3.41
7156 7553 4.392047 ACAGCAACAATTCACTCATCTCA 58.608 39.130 0.00 0.00 0.00 3.27
7172 7569 4.946157 TCATCTCAGAAAATTCAGAAGCCC 59.054 41.667 0.00 0.00 0.00 5.19
7297 7694 3.814945 CAACAAGAATGGAAAGCGAGAC 58.185 45.455 0.00 0.00 0.00 3.36
7307 7712 2.271800 GAAAGCGAGACGATCACCATT 58.728 47.619 0.00 0.00 0.00 3.16
7311 7716 1.005975 GCGAGACGATCACCATTTTCG 60.006 52.381 0.00 0.00 38.76 3.46
7323 7728 6.249035 TCACCATTTTCGTAATTCTTCCAC 57.751 37.500 0.00 0.00 0.00 4.02
7347 7752 4.937620 TGCTAGAGCGAAAAACTGATGAAT 59.062 37.500 0.00 0.00 45.83 2.57
7422 7827 0.179140 CGCTCTTCTCCTCACTGCTC 60.179 60.000 0.00 0.00 0.00 4.26
7435 7840 1.068264 CACTGCTCGAGCTGAACTGTA 60.068 52.381 40.05 18.52 41.71 2.74
7438 7843 0.109086 GCTCGAGCTGAACTGTAGCA 60.109 55.000 29.88 0.00 43.53 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.900040 ATCCCCCTGTACCCCACCA 61.900 63.158 0.00 0.00 0.00 4.17
2 3 2.043941 ATCCCCCTGTACCCCACC 59.956 66.667 0.00 0.00 0.00 4.61
4 5 1.920395 ATCCATCCCCCTGTACCCCA 61.920 60.000 0.00 0.00 0.00 4.96
5 6 0.195096 TATCCATCCCCCTGTACCCC 59.805 60.000 0.00 0.00 0.00 4.95
8 9 2.233922 CGATGTATCCATCCCCCTGTAC 59.766 54.545 0.00 0.00 43.87 2.90
9 10 2.536066 CGATGTATCCATCCCCCTGTA 58.464 52.381 0.00 0.00 43.87 2.74
10 11 1.352083 CGATGTATCCATCCCCCTGT 58.648 55.000 0.00 0.00 43.87 4.00
11 12 0.036010 GCGATGTATCCATCCCCCTG 60.036 60.000 0.00 0.00 43.87 4.45
12 13 0.473694 TGCGATGTATCCATCCCCCT 60.474 55.000 0.00 0.00 43.87 4.79
13 14 0.036010 CTGCGATGTATCCATCCCCC 60.036 60.000 0.00 0.00 43.87 5.40
14 15 0.674895 GCTGCGATGTATCCATCCCC 60.675 60.000 0.00 0.00 43.87 4.81
15 16 0.035317 TGCTGCGATGTATCCATCCC 59.965 55.000 0.00 0.00 43.87 3.85
76 77 9.624697 AAACATATACAAAAGGCGCATTATATG 57.375 29.630 23.48 23.48 36.56 1.78
113 122 8.815912 AGGCTGTTGGTGAAGAATAAAATTTAT 58.184 29.630 0.00 0.00 0.00 1.40
116 125 6.458210 CAGGCTGTTGGTGAAGAATAAAATT 58.542 36.000 6.28 0.00 0.00 1.82
122 131 1.915141 CCAGGCTGTTGGTGAAGAAT 58.085 50.000 14.43 0.00 33.38 2.40
136 145 1.951602 ACCGTAAAACAGAAACCAGGC 59.048 47.619 0.00 0.00 0.00 4.85
137 146 2.946990 ACACCGTAAAACAGAAACCAGG 59.053 45.455 0.00 0.00 0.00 4.45
158 167 1.052617 TTATCGGCCCGATCCAATCA 58.947 50.000 24.15 0.00 43.45 2.57
159 168 2.280628 GATTATCGGCCCGATCCAATC 58.719 52.381 24.15 21.68 43.45 2.67
160 169 1.405526 CGATTATCGGCCCGATCCAAT 60.406 52.381 24.15 17.57 43.45 3.16
172 181 0.457166 TATTCGGCCCGCGATTATCG 60.457 55.000 8.23 10.56 43.89 2.92
176 185 0.606604 ACTATATTCGGCCCGCGATT 59.393 50.000 8.23 0.00 0.00 3.34
180 189 1.271656 ACACTACTATATTCGGCCCGC 59.728 52.381 0.00 0.00 0.00 6.13
196 205 4.916983 TTTAGTCAAGCAAATGCACACT 57.083 36.364 8.28 8.35 45.16 3.55
197 206 6.381801 AGTATTTAGTCAAGCAAATGCACAC 58.618 36.000 8.28 1.11 45.16 3.82
198 207 6.573664 AGTATTTAGTCAAGCAAATGCACA 57.426 33.333 8.28 0.00 45.16 4.57
244 253 8.145122 ACCTTTGTGTTTCAGTGTAAAGAAAAA 58.855 29.630 0.00 0.00 35.71 1.94
247 256 6.616947 CACCTTTGTGTTTCAGTGTAAAGAA 58.383 36.000 0.00 0.00 37.72 2.52
266 275 3.569701 CAGCAGTGGAACAAATACACCTT 59.430 43.478 0.00 0.00 44.16 3.50
275 284 0.395586 AACAGGCAGCAGTGGAACAA 60.396 50.000 0.00 0.00 44.16 2.83
281 290 1.007734 CAGCAAACAGGCAGCAGTG 60.008 57.895 0.00 0.00 35.83 3.66
283 292 2.049433 GCAGCAAACAGGCAGCAG 60.049 61.111 0.00 0.00 44.61 4.24
285 294 1.663702 CTTGCAGCAAACAGGCAGC 60.664 57.895 9.65 0.00 45.34 5.25
292 301 3.806316 ATGTACGTACTTGCAGCAAAC 57.194 42.857 25.12 4.55 0.00 2.93
300 309 5.699458 AGGAAAACTGGAATGTACGTACTTG 59.301 40.000 25.12 10.43 0.00 3.16
316 325 7.325725 AGGGTTAGTTGTATACAGGAAAACT 57.674 36.000 5.56 8.79 35.39 2.66
317 326 8.316946 ACTAGGGTTAGTTGTATACAGGAAAAC 58.683 37.037 5.56 9.16 36.75 2.43
318 327 8.439964 ACTAGGGTTAGTTGTATACAGGAAAA 57.560 34.615 5.56 0.00 36.75 2.29
319 328 9.545928 TTACTAGGGTTAGTTGTATACAGGAAA 57.454 33.333 5.56 0.00 40.55 3.13
320 329 8.971073 GTTACTAGGGTTAGTTGTATACAGGAA 58.029 37.037 5.56 0.00 40.55 3.36
321 330 8.115384 TGTTACTAGGGTTAGTTGTATACAGGA 58.885 37.037 5.56 0.00 40.55 3.86
322 331 8.297470 TGTTACTAGGGTTAGTTGTATACAGG 57.703 38.462 5.56 0.00 40.55 4.00
323 332 8.964772 ACTGTTACTAGGGTTAGTTGTATACAG 58.035 37.037 5.56 0.00 40.55 2.74
324 333 8.884124 ACTGTTACTAGGGTTAGTTGTATACA 57.116 34.615 0.08 0.08 40.55 2.29
327 336 9.312904 TGTTACTGTTACTAGGGTTAGTTGTAT 57.687 33.333 0.00 0.00 40.55 2.29
328 337 8.704849 TGTTACTGTTACTAGGGTTAGTTGTA 57.295 34.615 0.00 0.00 40.55 2.41
329 338 7.601705 TGTTACTGTTACTAGGGTTAGTTGT 57.398 36.000 0.00 0.00 40.55 3.32
330 339 7.064253 GCATGTTACTGTTACTAGGGTTAGTTG 59.936 40.741 0.00 0.00 40.55 3.16
343 352 5.414454 GGATTGACCAAGCATGTTACTGTTA 59.586 40.000 0.00 0.00 38.79 2.41
429 440 3.131400 CCGGAAAAGAAAGGTTTTGGTGA 59.869 43.478 0.00 0.00 29.58 4.02
442 453 4.000988 GCTCAAACATACTCCGGAAAAGA 58.999 43.478 5.23 0.00 0.00 2.52
463 474 2.028043 GTGCCCTGTGCTTTGTGC 59.972 61.111 0.00 0.00 42.00 4.57
464 475 1.361271 CAGTGCCCTGTGCTTTGTG 59.639 57.895 0.00 0.00 42.00 3.33
473 484 3.544684 TGCTATCAAATACAGTGCCCTG 58.455 45.455 0.00 0.00 44.68 4.45
566 577 1.153539 TGGTGTGGATGGGGAGAAAA 58.846 50.000 0.00 0.00 0.00 2.29
615 641 4.005978 GGGAAAAGGGGGTGGGGG 62.006 72.222 0.00 0.00 0.00 5.40
650 688 1.218230 GCTGATCGATCCGGTCTTGC 61.218 60.000 22.31 10.90 37.91 4.01
805 863 2.494918 CTCAGAACCCTACGGCGG 59.505 66.667 13.24 0.00 0.00 6.13
806 864 1.033746 TACCTCAGAACCCTACGGCG 61.034 60.000 4.80 4.80 0.00 6.46
807 865 0.459078 GTACCTCAGAACCCTACGGC 59.541 60.000 0.00 0.00 0.00 5.68
812 870 0.039911 AGCTCGTACCTCAGAACCCT 59.960 55.000 0.00 0.00 0.00 4.34
818 879 1.002251 GGAATCGAGCTCGTACCTCAG 60.002 57.143 33.33 5.31 40.80 3.35
826 887 0.038159 GGGGTATGGAATCGAGCTCG 60.038 60.000 30.03 30.03 41.45 5.03
834 895 2.763645 GCCACCGGGGGTATGGAAT 61.764 63.158 27.26 0.00 37.04 3.01
835 896 3.413300 GCCACCGGGGGTATGGAA 61.413 66.667 27.26 0.00 37.04 3.53
845 906 3.622060 AAATCACGAGGGCCACCGG 62.622 63.158 19.72 0.00 43.47 5.28
848 909 0.804989 CAGAAAATCACGAGGGCCAC 59.195 55.000 6.18 0.00 0.00 5.01
854 915 1.298157 TGCGCCCAGAAAATCACGAG 61.298 55.000 4.18 0.00 0.00 4.18
872 933 4.530857 GGGCGGATCCAGACGGTG 62.531 72.222 13.41 0.00 36.21 4.94
924 993 1.990060 CCCTTCCGCTCTCCCTGAA 60.990 63.158 0.00 0.00 0.00 3.02
944 1013 2.522193 CCTAGTCCCCTCCTCCGC 60.522 72.222 0.00 0.00 0.00 5.54
947 1016 2.122769 GGCCCTAGTCCCCTCCTC 60.123 72.222 0.00 0.00 0.00 3.71
948 1017 4.159108 CGGCCCTAGTCCCCTCCT 62.159 72.222 0.00 0.00 0.00 3.69
950 1019 3.691297 TTCCGGCCCTAGTCCCCTC 62.691 68.421 0.00 0.00 0.00 4.30
955 1024 1.069358 CTGATTCTTCCGGCCCTAGTC 59.931 57.143 0.00 0.00 0.00 2.59
956 1025 1.123928 CTGATTCTTCCGGCCCTAGT 58.876 55.000 0.00 0.00 0.00 2.57
957 1026 0.394565 CCTGATTCTTCCGGCCCTAG 59.605 60.000 0.00 0.00 0.00 3.02
958 1027 1.054406 CCCTGATTCTTCCGGCCCTA 61.054 60.000 0.00 0.00 0.00 3.53
959 1028 2.378634 CCCTGATTCTTCCGGCCCT 61.379 63.158 0.00 0.00 0.00 5.19
962 1031 1.524849 GCTCCCTGATTCTTCCGGC 60.525 63.158 0.00 0.00 0.00 6.13
963 1032 1.227380 CGCTCCCTGATTCTTCCGG 60.227 63.158 0.00 0.00 0.00 5.14
964 1033 1.884926 GCGCTCCCTGATTCTTCCG 60.885 63.158 0.00 0.00 0.00 4.30
966 1035 1.884926 CGGCGCTCCCTGATTCTTC 60.885 63.158 7.64 0.00 0.00 2.87
967 1036 2.187946 CGGCGCTCCCTGATTCTT 59.812 61.111 7.64 0.00 0.00 2.52
968 1037 3.854669 CCGGCGCTCCCTGATTCT 61.855 66.667 7.64 0.00 0.00 2.40
1100 1169 3.168292 TCAGAGAGACATGAAGCAGGAA 58.832 45.455 0.00 0.00 0.00 3.36
1101 1170 2.812658 TCAGAGAGACATGAAGCAGGA 58.187 47.619 0.00 0.00 0.00 3.86
1102 1171 3.823281 ATCAGAGAGACATGAAGCAGG 57.177 47.619 0.00 0.00 0.00 4.85
1103 1172 7.306690 CGAAAATATCAGAGAGACATGAAGCAG 60.307 40.741 0.00 0.00 0.00 4.24
1104 1173 6.478016 CGAAAATATCAGAGAGACATGAAGCA 59.522 38.462 0.00 0.00 0.00 3.91
1105 1174 6.478344 ACGAAAATATCAGAGAGACATGAAGC 59.522 38.462 0.00 0.00 0.00 3.86
1106 1175 8.417780 AACGAAAATATCAGAGAGACATGAAG 57.582 34.615 0.00 0.00 0.00 3.02
1107 1176 8.777865 AAACGAAAATATCAGAGAGACATGAA 57.222 30.769 0.00 0.00 0.00 2.57
1123 1192 8.925700 GGAATCAGCAGAAAAATAAACGAAAAT 58.074 29.630 0.00 0.00 0.00 1.82
1124 1193 8.141268 AGGAATCAGCAGAAAAATAAACGAAAA 58.859 29.630 0.00 0.00 0.00 2.29
1125 1194 7.594758 CAGGAATCAGCAGAAAAATAAACGAAA 59.405 33.333 0.00 0.00 0.00 3.46
1126 1195 7.083858 CAGGAATCAGCAGAAAAATAAACGAA 58.916 34.615 0.00 0.00 0.00 3.85
1193 1263 0.888736 ACAAGCAATAGCACACGCCA 60.889 50.000 0.00 0.00 45.49 5.69
1232 1303 2.652941 ACAAATATGGGTTGCTTGCG 57.347 45.000 0.00 0.00 0.00 4.85
1236 1307 7.167535 AGCAAAAATAACAAATATGGGTTGCT 58.832 30.769 0.00 0.00 39.22 3.91
1242 1313 7.390162 ACCCACAAGCAAAAATAACAAATATGG 59.610 33.333 0.00 0.00 0.00 2.74
1243 1314 8.321650 ACCCACAAGCAAAAATAACAAATATG 57.678 30.769 0.00 0.00 0.00 1.78
1259 1330 4.043200 GCTCCGCAACCCACAAGC 62.043 66.667 0.00 0.00 0.00 4.01
1271 1344 0.745845 CCCATCCAAAGTCTGCTCCG 60.746 60.000 0.00 0.00 0.00 4.63
1277 1350 3.879321 GCAAGGAATCCCATCCAAAGTCT 60.879 47.826 0.00 0.00 42.27 3.24
1283 1356 1.600058 AGAGCAAGGAATCCCATCCA 58.400 50.000 0.00 0.00 42.27 3.41
1284 1357 2.305009 CAAGAGCAAGGAATCCCATCC 58.695 52.381 0.00 0.00 39.96 3.51
1285 1358 3.010200 ACAAGAGCAAGGAATCCCATC 57.990 47.619 0.00 0.00 33.88 3.51
1286 1359 3.463048 AACAAGAGCAAGGAATCCCAT 57.537 42.857 0.00 0.00 33.88 4.00
1287 1360 2.978156 AACAAGAGCAAGGAATCCCA 57.022 45.000 0.00 0.00 33.88 4.37
1288 1361 3.633986 CCATAACAAGAGCAAGGAATCCC 59.366 47.826 0.00 0.00 0.00 3.85
1289 1362 3.067320 GCCATAACAAGAGCAAGGAATCC 59.933 47.826 0.00 0.00 0.00 3.01
1290 1363 3.696051 TGCCATAACAAGAGCAAGGAATC 59.304 43.478 0.00 0.00 30.97 2.52
1291 1364 3.700538 TGCCATAACAAGAGCAAGGAAT 58.299 40.909 0.00 0.00 30.97 3.01
1295 1368 4.277672 AGCATATGCCATAACAAGAGCAAG 59.722 41.667 23.96 0.00 43.38 4.01
1297 1370 3.824133 AGCATATGCCATAACAAGAGCA 58.176 40.909 23.96 0.00 43.38 4.26
1307 1380 9.312904 ACCAATTTTAACTATAGCATATGCCAT 57.687 29.630 23.96 18.39 43.38 4.40
1308 1381 8.704849 ACCAATTTTAACTATAGCATATGCCA 57.295 30.769 23.96 11.65 43.38 4.92
1317 1390 9.783256 GCAACCACTTACCAATTTTAACTATAG 57.217 33.333 0.00 0.00 0.00 1.31
1318 1391 9.523168 AGCAACCACTTACCAATTTTAACTATA 57.477 29.630 0.00 0.00 0.00 1.31
1331 1404 5.334105 CGATATATGCAAGCAACCACTTACC 60.334 44.000 0.00 0.00 0.00 2.85
1350 1423 6.338214 ACTAGCAACATGAGTCATCGATAT 57.662 37.500 1.56 0.00 0.00 1.63
1532 1605 4.042311 CCTGAGACCTCATAGCTAGTAGGA 59.958 50.000 24.19 8.54 39.13 2.94
1551 1624 7.402054 AGTATGATGTTGTTTACCAATCCTGA 58.598 34.615 0.00 0.00 35.02 3.86
1575 1648 6.263516 CCATCTGGCCAATTATGTATGAAG 57.736 41.667 7.01 0.00 0.00 3.02
1593 1668 0.610232 GCCCACAGTTTCAGCCATCT 60.610 55.000 0.00 0.00 0.00 2.90
1620 1695 6.457355 AGCATTGATTTATTCTGTGCAAACA 58.543 32.000 0.00 0.00 37.66 2.83
1732 1860 4.199002 AGGAGGGGAACTGAACATTTTT 57.801 40.909 0.00 0.00 0.00 1.94
1787 1915 7.148590 GGTTTGCAAGATGTTTCCATTATGTTC 60.149 37.037 0.00 0.00 0.00 3.18
1863 1991 6.239036 GGCACAAATGGGAACTAGGAAATATC 60.239 42.308 0.00 0.00 0.00 1.63
2013 2141 9.962809 AACAATTGGGATTTTGAACATGAATAT 57.037 25.926 10.83 0.00 0.00 1.28
2027 2170 9.005777 CAAATCAATCTTCAAACAATTGGGATT 57.994 29.630 10.83 6.76 38.56 3.01
2129 2272 1.375908 GCTGGATGACTGCCGAACA 60.376 57.895 0.00 0.00 38.01 3.18
2130 2273 1.078848 AGCTGGATGACTGCCGAAC 60.079 57.895 0.00 0.00 44.29 3.95
2131 2274 1.219124 GAGCTGGATGACTGCCGAA 59.781 57.895 0.00 0.00 44.29 4.30
2132 2275 2.725312 GGAGCTGGATGACTGCCGA 61.725 63.158 0.00 0.00 44.29 5.54
2133 2276 2.202987 GGAGCTGGATGACTGCCG 60.203 66.667 0.00 0.00 44.29 5.69
2134 2277 0.818445 CATGGAGCTGGATGACTGCC 60.818 60.000 0.00 0.00 44.29 4.85
2135 2278 0.818445 CCATGGAGCTGGATGACTGC 60.818 60.000 5.56 0.00 43.63 4.40
2136 2279 0.835276 TCCATGGAGCTGGATGACTG 59.165 55.000 11.44 0.00 40.43 3.51
2137 2280 1.129917 CTCCATGGAGCTGGATGACT 58.870 55.000 28.45 0.00 44.23 3.41
2138 2281 3.702147 CTCCATGGAGCTGGATGAC 57.298 57.895 28.45 0.00 44.23 3.06
2175 2318 1.954927 CCTATTTTCTCGGAGTGGCC 58.045 55.000 4.69 0.00 0.00 5.36
2176 2319 1.134371 AGCCTATTTTCTCGGAGTGGC 60.134 52.381 4.69 9.94 39.40 5.01
2177 2320 2.555199 CAGCCTATTTTCTCGGAGTGG 58.445 52.381 4.69 1.22 0.00 4.00
2178 2321 1.936547 GCAGCCTATTTTCTCGGAGTG 59.063 52.381 4.69 0.00 0.00 3.51
2179 2322 1.471676 CGCAGCCTATTTTCTCGGAGT 60.472 52.381 4.69 0.00 0.00 3.85
2180 2323 1.212616 CGCAGCCTATTTTCTCGGAG 58.787 55.000 0.00 0.00 0.00 4.63
2181 2324 0.179084 CCGCAGCCTATTTTCTCGGA 60.179 55.000 0.00 0.00 37.79 4.55
2182 2325 1.776034 GCCGCAGCCTATTTTCTCGG 61.776 60.000 0.00 0.00 38.51 4.63
2183 2326 1.643832 GCCGCAGCCTATTTTCTCG 59.356 57.895 0.00 0.00 0.00 4.04
2205 2348 4.869440 CTCCGCGCCAGAGCAGAG 62.869 72.222 8.97 0.00 39.83 3.35
2218 2361 4.504916 CTCCGCTCCACAGCTCCG 62.505 72.222 0.00 0.00 44.40 4.63
2219 2362 3.071206 TCTCCGCTCCACAGCTCC 61.071 66.667 0.00 0.00 44.40 4.70
2220 2363 2.493973 CTCTCCGCTCCACAGCTC 59.506 66.667 0.00 0.00 44.40 4.09
2221 2364 3.768922 GCTCTCCGCTCCACAGCT 61.769 66.667 0.00 0.00 44.40 4.24
2230 2373 4.742201 TGTTCGGCAGCTCTCCGC 62.742 66.667 16.83 2.19 46.05 5.54
2232 2375 2.125350 CCTGTTCGGCAGCTCTCC 60.125 66.667 0.00 0.00 43.71 3.71
2233 2376 2.125350 CCCTGTTCGGCAGCTCTC 60.125 66.667 0.00 0.00 43.71 3.20
2241 2384 1.653151 GCTACTAAAGCCCTGTTCGG 58.347 55.000 0.00 0.00 46.25 4.30
2250 2393 8.184192 ACATTTTCACATGTATGCTACTAAAGC 58.816 33.333 0.00 0.00 42.62 3.51
2253 2396 9.838975 CAAACATTTTCACATGTATGCTACTAA 57.161 29.630 0.00 0.00 36.30 2.24
2254 2397 9.225436 TCAAACATTTTCACATGTATGCTACTA 57.775 29.630 0.00 0.00 36.30 1.82
2255 2398 8.109705 TCAAACATTTTCACATGTATGCTACT 57.890 30.769 0.00 0.00 36.30 2.57
2286 2429 0.911769 TCCATGCCAGTTCCACCTAG 59.088 55.000 0.00 0.00 0.00 3.02
2289 2432 2.024414 GTTATCCATGCCAGTTCCACC 58.976 52.381 0.00 0.00 0.00 4.61
2309 2452 1.359848 CTCGTGAAGTTCGGGGAATG 58.640 55.000 0.00 0.00 0.00 2.67
2325 2468 4.050553 GGAGAGATGAAAGAGAATGCTCG 58.949 47.826 0.00 0.00 45.98 5.03
2412 2555 4.380867 GGTGAACTGATGCCATAAGTTTGG 60.381 45.833 8.85 1.09 39.94 3.28
2494 2641 1.705873 AGTGGGATTAGGACGGCTAG 58.294 55.000 0.00 0.00 0.00 3.42
2538 2685 0.179045 ATATCTTCCACCAGGTGCGC 60.179 55.000 14.98 0.00 35.89 6.09
2540 2687 2.772287 GCTATATCTTCCACCAGGTGC 58.228 52.381 14.98 0.00 35.89 5.01
2576 2724 4.023107 GCCAGAAGGGTTTTCAGTAAGTTC 60.023 45.833 0.00 0.00 39.65 3.01
2579 2727 2.820197 GGCCAGAAGGGTTTTCAGTAAG 59.180 50.000 0.00 0.00 39.65 2.34
2603 2751 6.893583 AGAGAAGGCTTTGATGAGCTTTATA 58.106 36.000 0.00 0.00 41.35 0.98
2640 2802 2.288213 GCCAAACTAAAGCTCCAACACC 60.288 50.000 0.00 0.00 0.00 4.16
2692 2854 1.672881 GTGTGCTGCCTATTGGTGATC 59.327 52.381 0.00 0.00 35.27 2.92
2890 3052 6.276832 AGCAGTGTTCAAATATTTGCTGAT 57.723 33.333 25.34 20.28 38.82 2.90
2914 3077 9.461312 ACTTCACTAGCCATTGTAATGAAAATA 57.539 29.630 6.18 0.00 38.70 1.40
2947 3110 1.851304 TTCCTGGTGGATGCAATTCC 58.149 50.000 0.00 0.00 42.81 3.01
2948 3111 4.081531 TGAATTTCCTGGTGGATGCAATTC 60.082 41.667 11.06 11.06 42.15 2.17
2949 3112 3.839490 TGAATTTCCTGGTGGATGCAATT 59.161 39.130 0.00 0.00 42.81 2.32
2950 3113 3.443052 TGAATTTCCTGGTGGATGCAAT 58.557 40.909 0.00 0.00 42.81 3.56
2951 3114 2.886913 TGAATTTCCTGGTGGATGCAA 58.113 42.857 0.00 0.00 42.81 4.08
2952 3115 2.562298 GTTGAATTTCCTGGTGGATGCA 59.438 45.455 0.00 0.00 42.81 3.96
2953 3116 2.562298 TGTTGAATTTCCTGGTGGATGC 59.438 45.455 0.00 0.00 42.81 3.91
2954 3117 5.047164 TGAATGTTGAATTTCCTGGTGGATG 60.047 40.000 0.00 0.00 42.81 3.51
2955 3118 5.085920 TGAATGTTGAATTTCCTGGTGGAT 58.914 37.500 0.00 0.00 42.81 3.41
2956 3119 4.478203 TGAATGTTGAATTTCCTGGTGGA 58.522 39.130 0.00 0.00 41.36 4.02
2957 3120 4.281688 ACTGAATGTTGAATTTCCTGGTGG 59.718 41.667 0.00 0.00 0.00 4.61
2958 3121 5.458041 ACTGAATGTTGAATTTCCTGGTG 57.542 39.130 0.00 0.00 0.00 4.17
2959 3122 6.098124 TCAAACTGAATGTTGAATTTCCTGGT 59.902 34.615 0.00 0.00 39.13 4.00
2960 3123 6.514947 TCAAACTGAATGTTGAATTTCCTGG 58.485 36.000 0.00 0.00 39.13 4.45
2961 3124 7.205297 ACTCAAACTGAATGTTGAATTTCCTG 58.795 34.615 0.00 0.00 39.13 3.86
2962 3125 7.352079 ACTCAAACTGAATGTTGAATTTCCT 57.648 32.000 0.00 0.00 39.13 3.36
3068 3247 5.643777 ACTGGCAGCTTATTACAACTTACAG 59.356 40.000 15.89 0.00 0.00 2.74
3081 3260 2.368548 TCAGAAAGTCACTGGCAGCTTA 59.631 45.455 15.89 0.00 36.22 3.09
3138 3318 5.105473 CCCACTGCTTGCTAGTTAGTAGTTA 60.105 44.000 12.04 0.00 35.54 2.24
3139 3319 4.322801 CCCACTGCTTGCTAGTTAGTAGTT 60.323 45.833 12.04 0.31 35.54 2.24
3140 3320 3.195825 CCCACTGCTTGCTAGTTAGTAGT 59.804 47.826 9.87 9.87 37.75 2.73
3141 3321 3.447586 TCCCACTGCTTGCTAGTTAGTAG 59.552 47.826 8.88 8.88 0.00 2.57
3142 3322 3.194968 GTCCCACTGCTTGCTAGTTAGTA 59.805 47.826 6.83 0.00 0.00 1.82
3143 3323 2.028020 GTCCCACTGCTTGCTAGTTAGT 60.028 50.000 0.00 0.00 0.00 2.24
3144 3324 2.028112 TGTCCCACTGCTTGCTAGTTAG 60.028 50.000 0.00 0.00 0.00 2.34
3201 3381 2.519937 GCCCATAATTGGCTTGGCT 58.480 52.632 0.00 0.00 45.70 4.75
3234 3414 3.513912 TCGGTCACCACAAGATTCACTAT 59.486 43.478 0.00 0.00 0.00 2.12
3278 3458 1.419374 CCTCGTCATACGCCATAAGC 58.581 55.000 0.00 0.00 42.21 3.09
3314 3494 1.202758 TGCTACCACACAAAGTCAGGG 60.203 52.381 0.00 0.00 0.00 4.45
3362 3542 8.703604 TTAGTTATCAACTTGTCATACAGAGC 57.296 34.615 0.00 0.00 42.81 4.09
3450 3637 2.024414 AGTGGTGCAAGTGGAAAGAAC 58.976 47.619 0.00 0.00 0.00 3.01
3566 3756 6.018180 CACGTGTACTGCTAGTATATCTGTGA 60.018 42.308 7.58 0.00 32.65 3.58
3623 3813 5.404366 GCAGTGCATATTTTAATCATGCTGG 59.596 40.000 11.09 7.52 44.27 4.85
3627 3817 7.325338 GCTAGTGCAGTGCATATTTTAATCATG 59.675 37.037 22.87 3.24 41.91 3.07
3629 3819 6.318396 TGCTAGTGCAGTGCATATTTTAATCA 59.682 34.615 22.87 7.22 45.31 2.57
3665 3855 7.658179 ACATGTTGTGCACTAGTATATATGC 57.342 36.000 19.41 0.00 38.59 3.14
3692 3977 4.283722 TCCTCTACAAAACTCCTCTGTTCC 59.716 45.833 0.00 0.00 0.00 3.62
3704 3999 5.527582 GTGCTCTGTTTCTTCCTCTACAAAA 59.472 40.000 0.00 0.00 0.00 2.44
3709 4004 4.380973 CGATGTGCTCTGTTTCTTCCTCTA 60.381 45.833 0.00 0.00 0.00 2.43
3714 4009 1.800586 TGCGATGTGCTCTGTTTCTTC 59.199 47.619 0.00 0.00 46.63 2.87
3732 4027 2.433994 CCTCCTCCTCCTCTGCTGC 61.434 68.421 0.00 0.00 0.00 5.25
3748 4045 1.194781 CCCCTATGCTACGATGCCCT 61.195 60.000 0.00 0.00 0.00 5.19
3749 4046 1.192146 TCCCCTATGCTACGATGCCC 61.192 60.000 0.00 0.00 0.00 5.36
3750 4047 0.685097 TTCCCCTATGCTACGATGCC 59.315 55.000 0.00 0.00 0.00 4.40
3751 4048 1.618837 TCTTCCCCTATGCTACGATGC 59.381 52.381 0.00 0.00 0.00 3.91
3754 4051 3.117625 TCTCTTCTTCCCCTATGCTACGA 60.118 47.826 0.00 0.00 0.00 3.43
3755 4052 3.223435 TCTCTTCTTCCCCTATGCTACG 58.777 50.000 0.00 0.00 0.00 3.51
3756 4053 4.279922 GTCTCTCTTCTTCCCCTATGCTAC 59.720 50.000 0.00 0.00 0.00 3.58
3757 4054 4.475345 GTCTCTCTTCTTCCCCTATGCTA 58.525 47.826 0.00 0.00 0.00 3.49
3797 4094 0.930726 TCCTCCTCCCCTCTCTTCTC 59.069 60.000 0.00 0.00 0.00 2.87
3798 4095 0.933700 CTCCTCCTCCCCTCTCTTCT 59.066 60.000 0.00 0.00 0.00 2.85
3799 4096 0.105709 CCTCCTCCTCCCCTCTCTTC 60.106 65.000 0.00 0.00 0.00 2.87
3804 4101 2.015726 TCCTCCTCCTCCTCCCCTC 61.016 68.421 0.00 0.00 0.00 4.30
3805 4102 2.018086 CTCCTCCTCCTCCTCCCCT 61.018 68.421 0.00 0.00 0.00 4.79
3806 4103 2.612251 CTCCTCCTCCTCCTCCCC 59.388 72.222 0.00 0.00 0.00 4.81
3808 4105 2.015726 TCCCTCCTCCTCCTCCTCC 61.016 68.421 0.00 0.00 0.00 4.30
3810 4107 2.018086 CCTCCCTCCTCCTCCTCCT 61.018 68.421 0.00 0.00 0.00 3.69
3863 4160 3.067091 CAGCACACCTCTCTGGCT 58.933 61.111 0.00 0.00 40.22 4.75
3992 4289 0.178944 TCCTCCCAGTTTCAGGTCGA 60.179 55.000 0.00 0.00 0.00 4.20
4000 4297 1.561542 CCATACAGCTCCTCCCAGTTT 59.438 52.381 0.00 0.00 0.00 2.66
4027 4324 4.845580 CAGCGCGCCTCTTCCCAT 62.846 66.667 30.33 1.73 0.00 4.00
4045 4342 1.601759 CTGACCTTGCTGTGGTGGG 60.602 63.158 0.86 0.00 38.03 4.61
4048 4345 0.683973 CTCTCTGACCTTGCTGTGGT 59.316 55.000 0.00 0.00 41.07 4.16
4081 4378 7.147958 TCTCTGATCCAAGAGAGAGAGAATA 57.852 40.000 8.35 0.00 46.13 1.75
4095 4404 2.539432 TCAGGCTTCTCTCTGATCCA 57.461 50.000 0.00 0.00 35.37 3.41
4116 4447 2.556608 AATAGGTAGGGTGGGCGGGT 62.557 60.000 0.00 0.00 0.00 5.28
4120 4451 2.294979 CGAAAAATAGGTAGGGTGGGC 58.705 52.381 0.00 0.00 0.00 5.36
4507 4838 1.338389 GCATGGAGCCTGTTTGCAATT 60.338 47.619 0.00 0.00 37.23 2.32
4521 4852 3.548745 CATCTGTTACAGAGGCATGGA 57.451 47.619 20.12 0.00 44.08 3.41
4537 4868 3.225104 ACAAAACATGTCTGTGGCATCT 58.775 40.909 11.63 0.00 37.96 2.90
4548 4879 3.766591 TCAACCCTCACAACAAAACATGT 59.233 39.130 0.00 0.00 46.82 3.21
4561 4892 1.070786 GCCAAGACGTCAACCCTCA 59.929 57.895 19.50 0.00 0.00 3.86
4568 4899 4.771127 GTCAAGGCCAAGACGTCA 57.229 55.556 19.50 0.00 0.00 4.35
4586 4917 1.202891 GGATAATACCACTGTGGCCCC 60.203 57.143 26.20 13.82 42.67 5.80
4596 4928 5.163290 TGTCGCCATAACAAGGATAATACCA 60.163 40.000 0.00 0.00 0.00 3.25
4681 5020 9.291664 CAGAAGTTCGTTTTGGTTTTTATACAA 57.708 29.630 0.00 0.00 0.00 2.41
4761 5104 2.719705 TCCTTAACCCACCAATTGAGGT 59.280 45.455 7.12 7.95 44.48 3.85
4811 5162 1.681264 GTACCCCCAAAGTGCATATGC 59.319 52.381 21.09 21.09 42.50 3.14
4843 5194 1.217916 TGAAGTTGAGGGGTGGTTCA 58.782 50.000 0.00 0.00 0.00 3.18
4873 5224 7.979537 ACATTTCTACGAAGAGTGCAATATACA 59.020 33.333 0.00 0.00 31.96 2.29
4935 5287 6.831976 ACTGGAAAGAACAGAGTAAGAACAT 58.168 36.000 0.00 0.00 39.24 2.71
4996 5348 4.454678 TCAGCCTCAAATAGTATGCCTTG 58.545 43.478 0.00 0.00 0.00 3.61
5119 5471 1.270550 GTTGTGGAGTTGGAGCCATTG 59.729 52.381 0.00 0.00 36.41 2.82
5168 5521 5.648092 ACAAGCATACACCATAGAAAACTCC 59.352 40.000 0.00 0.00 0.00 3.85
5172 5525 7.759489 AAAGACAAGCATACACCATAGAAAA 57.241 32.000 0.00 0.00 0.00 2.29
5178 5531 5.824624 CCAGATAAAGACAAGCATACACCAT 59.175 40.000 0.00 0.00 0.00 3.55
5185 5538 9.632638 ATTATTACACCAGATAAAGACAAGCAT 57.367 29.630 0.00 0.00 0.00 3.79
5218 5571 7.660112 TCTACGTTACTTAAATGGTGAGACAA 58.340 34.615 0.00 0.00 0.00 3.18
5220 5573 8.430828 GTTTCTACGTTACTTAAATGGTGAGAC 58.569 37.037 0.00 0.00 0.00 3.36
5238 5591 9.408069 AGAGATTACTTTGTACTTGTTTCTACG 57.592 33.333 0.00 0.00 0.00 3.51
5451 5804 1.717194 CACCATTTGGCATTGCAGAC 58.283 50.000 11.39 0.00 39.32 3.51
5545 5898 1.416401 ACTGTGAGGACCGTGAATGTT 59.584 47.619 0.00 0.00 0.00 2.71
5562 5915 2.684881 GGTTGAAGCATCCATACCACTG 59.315 50.000 0.00 0.00 0.00 3.66
5619 5972 9.062524 GTTGTACCATTATTATCTGCACCATAA 57.937 33.333 0.00 0.00 0.00 1.90
5794 6147 4.797800 ATGACGATGACTCCATATCCAG 57.202 45.455 0.00 0.00 32.09 3.86
5921 6274 7.920682 GTGAAAAGGTGCTCAAATAAGAAAAGA 59.079 33.333 0.00 0.00 0.00 2.52
5948 6301 5.114081 ACGTATACAGCCAATGGACTTTAC 58.886 41.667 2.05 0.00 0.00 2.01
6034 6387 6.715280 TGAGAAGTTATTTGGCTCAGAAGAT 58.285 36.000 0.00 0.00 32.36 2.40
6097 6450 3.368948 GGCTCTCGAAAAGAAGACTGGAT 60.369 47.826 0.00 0.00 32.23 3.41
6149 6502 7.377131 CCTCTCAATTTTCGAAAAAGTGAAGAC 59.623 37.037 27.00 0.00 30.50 3.01
6150 6503 7.282224 TCCTCTCAATTTTCGAAAAAGTGAAGA 59.718 33.333 27.00 23.97 30.50 2.87
6153 6506 6.238648 GGTCCTCTCAATTTTCGAAAAAGTGA 60.239 38.462 25.77 26.01 0.00 3.41
6179 6549 9.588096 TCTTCTCCTGCTAATAGATATTACACA 57.412 33.333 0.00 0.00 0.00 3.72
6217 6587 0.890683 GCAGGCACCAAACTAATGCT 59.109 50.000 0.00 0.00 39.38 3.79
6237 6607 0.096454 CACATCGAGCATGCACAGTG 59.904 55.000 21.98 17.30 35.65 3.66
6430 6807 5.639082 CACACACAGCATGAGACATTAGTAA 59.361 40.000 0.00 0.00 39.69 2.24
6476 6853 9.559958 CAAGTTCTCCATGAATATGTACAAAAC 57.440 33.333 0.00 0.00 36.99 2.43
6507 6884 2.428530 GGGAAAAGGCTAGCATGAAAGG 59.571 50.000 18.24 0.00 0.00 3.11
6537 6914 5.043903 CACTCTACATTACAAGACATCGGG 58.956 45.833 0.00 0.00 0.00 5.14
6560 6937 9.562583 TTTTGATCAAGTTACAACTTAACACAC 57.437 29.630 8.41 0.00 46.89 3.82
6565 6942 9.677567 GCATCTTTTGATCAAGTTACAACTTAA 57.322 29.630 8.41 0.00 41.18 1.85
6567 6944 7.715657 TGCATCTTTTGATCAAGTTACAACTT 58.284 30.769 8.41 1.47 42.63 2.66
6690 7067 5.097948 ACCCCTTAACCCAGCAAATTTAAT 58.902 37.500 0.00 0.00 0.00 1.40
6709 7086 2.092323 GCCAGACAAGAACATAACCCC 58.908 52.381 0.00 0.00 0.00 4.95
6755 7132 7.094377 GGCCATCACAAATTAAACTCTCACTTA 60.094 37.037 0.00 0.00 0.00 2.24
6768 7157 4.858850 TCTGACTATGGCCATCACAAATT 58.141 39.130 24.80 0.00 0.00 1.82
6781 7170 7.282332 TGTTCATCCTGAGTATCTGACTATG 57.718 40.000 0.00 0.00 39.06 2.23
6784 7173 6.836007 TGTATGTTCATCCTGAGTATCTGACT 59.164 38.462 0.00 0.00 42.90 3.41
6790 7179 7.141758 ACCAATGTATGTTCATCCTGAGTAT 57.858 36.000 0.00 0.00 0.00 2.12
6791 7180 6.560003 ACCAATGTATGTTCATCCTGAGTA 57.440 37.500 0.00 0.00 0.00 2.59
6795 7184 6.324819 GTGAAACCAATGTATGTTCATCCTG 58.675 40.000 0.00 0.00 29.81 3.86
6798 7187 4.793216 GCGTGAAACCAATGTATGTTCATC 59.207 41.667 0.00 0.00 29.81 2.92
6811 7200 2.418692 ACAATGTATCGCGTGAAACCA 58.581 42.857 5.77 0.00 0.00 3.67
6812 7201 4.587211 TTACAATGTATCGCGTGAAACC 57.413 40.909 5.77 0.00 0.00 3.27
6819 7208 4.375405 GCACTCAGATTACAATGTATCGCG 60.375 45.833 0.00 0.00 0.00 5.87
6820 7209 4.507756 TGCACTCAGATTACAATGTATCGC 59.492 41.667 0.00 0.00 0.00 4.58
6821 7210 6.476706 TCTTGCACTCAGATTACAATGTATCG 59.523 38.462 0.00 0.00 0.00 2.92
6822 7211 7.776933 TCTTGCACTCAGATTACAATGTATC 57.223 36.000 0.00 0.00 0.00 2.24
6823 7212 7.826252 AGTTCTTGCACTCAGATTACAATGTAT 59.174 33.333 0.00 0.00 0.00 2.29
6824 7213 7.161404 AGTTCTTGCACTCAGATTACAATGTA 58.839 34.615 0.00 0.00 0.00 2.29
6825 7214 6.000219 AGTTCTTGCACTCAGATTACAATGT 59.000 36.000 0.00 0.00 0.00 2.71
6826 7215 6.492007 AGTTCTTGCACTCAGATTACAATG 57.508 37.500 0.00 0.00 0.00 2.82
6827 7216 5.349817 CGAGTTCTTGCACTCAGATTACAAT 59.650 40.000 3.31 0.00 43.11 2.71
6828 7217 4.686091 CGAGTTCTTGCACTCAGATTACAA 59.314 41.667 3.31 0.00 43.11 2.41
6829 7218 4.237724 CGAGTTCTTGCACTCAGATTACA 58.762 43.478 3.31 0.00 43.11 2.41
6830 7219 3.061429 GCGAGTTCTTGCACTCAGATTAC 59.939 47.826 7.12 0.00 43.11 1.89
6831 7220 3.254060 GCGAGTTCTTGCACTCAGATTA 58.746 45.455 7.12 0.00 43.11 1.75
6832 7221 2.072298 GCGAGTTCTTGCACTCAGATT 58.928 47.619 7.12 0.00 43.11 2.40
6833 7222 1.001293 TGCGAGTTCTTGCACTCAGAT 59.999 47.619 10.29 0.00 43.11 2.90
6834 7223 0.389025 TGCGAGTTCTTGCACTCAGA 59.611 50.000 10.29 0.00 43.11 3.27
6835 7224 1.128136 CATGCGAGTTCTTGCACTCAG 59.872 52.381 15.73 4.60 45.07 3.35
6836 7225 1.150827 CATGCGAGTTCTTGCACTCA 58.849 50.000 15.73 0.00 45.07 3.41
6837 7226 1.432514 TCATGCGAGTTCTTGCACTC 58.567 50.000 15.73 0.00 45.07 3.51
6838 7227 1.882912 TTCATGCGAGTTCTTGCACT 58.117 45.000 15.73 4.54 45.07 4.40
6843 7236 4.022935 TGCAAGAAATTCATGCGAGTTCTT 60.023 37.500 16.73 14.48 43.33 2.52
6845 7238 3.825308 TGCAAGAAATTCATGCGAGTTC 58.175 40.909 16.73 0.00 43.33 3.01
6849 7242 3.974912 TGTTTGCAAGAAATTCATGCGA 58.025 36.364 16.73 12.99 43.33 5.10
6871 7264 1.400846 CATCCGTGTACGTCTAGTGCT 59.599 52.381 0.00 0.00 36.37 4.40
6880 7273 5.834239 AAAAGTAAGTTCATCCGTGTACG 57.166 39.130 0.00 0.00 39.44 3.67
6881 7274 7.417496 AGAAAAAGTAAGTTCATCCGTGTAC 57.583 36.000 0.00 0.00 0.00 2.90
6882 7275 7.172019 GGAAGAAAAAGTAAGTTCATCCGTGTA 59.828 37.037 0.00 0.00 33.39 2.90
6886 7279 6.426937 TGAGGAAGAAAAAGTAAGTTCATCCG 59.573 38.462 0.00 0.00 43.29 4.18
6890 7283 8.980481 ATCTTGAGGAAGAAAAAGTAAGTTCA 57.020 30.769 0.00 0.00 41.64 3.18
6891 7284 8.508062 GGATCTTGAGGAAGAAAAAGTAAGTTC 58.492 37.037 0.00 0.00 41.64 3.01
6897 7290 9.674068 GTATTAGGATCTTGAGGAAGAAAAAGT 57.326 33.333 0.00 0.00 41.64 2.66
6898 7291 9.672673 TGTATTAGGATCTTGAGGAAGAAAAAG 57.327 33.333 0.00 0.00 41.64 2.27
6900 7293 8.826765 AGTGTATTAGGATCTTGAGGAAGAAAA 58.173 33.333 0.00 0.00 41.64 2.29
6904 7297 5.988561 GCAGTGTATTAGGATCTTGAGGAAG 59.011 44.000 0.00 0.00 0.00 3.46
6906 7299 4.962362 TGCAGTGTATTAGGATCTTGAGGA 59.038 41.667 0.00 0.00 0.00 3.71
6907 7300 5.282055 TGCAGTGTATTAGGATCTTGAGG 57.718 43.478 0.00 0.00 0.00 3.86
6956 7349 5.947663 TCTTCCCCTTGTTGAGATGTAAAA 58.052 37.500 0.00 0.00 0.00 1.52
6957 7350 5.576563 TCTTCCCCTTGTTGAGATGTAAA 57.423 39.130 0.00 0.00 0.00 2.01
6999 7392 4.091509 CGACGGGAAAACAATCTGTTAGAG 59.908 45.833 0.00 0.00 40.14 2.43
7014 7407 2.029369 CCACGGTTTCGACGGGAA 59.971 61.111 0.00 0.00 36.74 3.97
7016 7409 1.006337 TAACCACGGTTTCGACGGG 60.006 57.895 6.80 0.00 39.31 5.28
7060 7453 2.686405 GCTTGATGATGTTCTCCATGCA 59.314 45.455 0.00 0.00 32.56 3.96
7141 7538 8.727910 TCTGAATTTTCTGAGATGAGTGAATTG 58.272 33.333 0.00 0.00 32.42 2.32
7142 7539 8.859236 TCTGAATTTTCTGAGATGAGTGAATT 57.141 30.769 0.00 0.00 32.42 2.17
7143 7540 8.859236 TTCTGAATTTTCTGAGATGAGTGAAT 57.141 30.769 1.07 0.00 36.67 2.57
7148 7545 5.066246 GGGCTTCTGAATTTTCTGAGATGAG 59.934 44.000 0.00 0.00 36.67 2.90
7150 7547 4.948621 AGGGCTTCTGAATTTTCTGAGATG 59.051 41.667 0.00 0.00 36.67 2.90
7151 7548 5.190357 AGGGCTTCTGAATTTTCTGAGAT 57.810 39.130 0.00 0.00 36.67 2.75
7156 7553 3.509184 GCTCAAGGGCTTCTGAATTTTCT 59.491 43.478 0.00 0.00 0.00 2.52
7172 7569 2.684843 GCTCACCGGCAAGCTCAAG 61.685 63.158 18.78 0.00 35.60 3.02
7297 7694 6.183360 TGGAAGAATTACGAAAATGGTGATCG 60.183 38.462 0.00 0.00 42.05 3.69
7307 7712 6.032956 TCTAGCAGTGGAAGAATTACGAAA 57.967 37.500 0.00 0.00 0.00 3.46
7311 7716 3.799420 CGCTCTAGCAGTGGAAGAATTAC 59.201 47.826 2.44 0.00 42.21 1.89
7323 7728 3.928992 TCATCAGTTTTTCGCTCTAGCAG 59.071 43.478 2.44 0.00 42.21 4.24
7422 7827 1.068264 TCTGTGCTACAGTTCAGCTCG 60.068 52.381 13.59 0.00 46.03 5.03
7435 7840 5.069119 TGATTTCTATCACCGTATCTGTGCT 59.931 40.000 0.00 0.00 35.87 4.40
7438 7843 6.961360 TCTGATTTCTATCACCGTATCTGT 57.039 37.500 0.00 0.00 35.87 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.