Multiple sequence alignment - TraesCS7B01G313600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G313600 chr7B 100.000 4229 0 0 1 4229 560512901 560517129 0.000000e+00 7810.0
1 TraesCS7B01G313600 chr7B 86.986 584 75 1 1076 1659 559630150 559630732 0.000000e+00 656.0
2 TraesCS7B01G313600 chr7D 95.444 3380 106 21 860 4213 524314779 524318136 0.000000e+00 5345.0
3 TraesCS7B01G313600 chr7D 89.733 711 73 0 952 1662 523544636 523545346 0.000000e+00 909.0
4 TraesCS7B01G313600 chr7D 87.097 682 65 16 48 714 185183766 185183093 0.000000e+00 750.0
5 TraesCS7B01G313600 chr7A 94.763 3380 124 20 860 4213 604379200 604382552 0.000000e+00 5212.0
6 TraesCS7B01G313600 chr5A 89.826 806 68 7 34 833 689198035 689197238 0.000000e+00 1022.0
7 TraesCS7B01G313600 chr3D 94.754 629 31 2 234 861 41642382 41641755 0.000000e+00 977.0
8 TraesCS7B01G313600 chr6A 94.384 552 25 3 860 1410 74151634 74152180 0.000000e+00 843.0
9 TraesCS7B01G313600 chr6D 84.737 819 80 13 48 861 337242686 337241908 0.000000e+00 778.0
10 TraesCS7B01G313600 chr6D 86.804 682 67 16 48 714 245978536 245979209 0.000000e+00 739.0
11 TraesCS7B01G313600 chr5D 86.950 682 65 17 48 714 388604841 388604169 0.000000e+00 745.0
12 TraesCS7B01G313600 chr6B 86.427 641 73 9 47 676 72431004 72431641 0.000000e+00 689.0
13 TraesCS7B01G313600 chr1B 85.740 547 61 13 57 595 201721230 201721767 2.850000e-156 562.0
14 TraesCS7B01G313600 chr2B 86.813 455 51 9 226 676 51013550 51013999 2.270000e-137 499.0
15 TraesCS7B01G313600 chr2B 100.000 36 0 0 1 36 577247811 577247776 2.730000e-07 67.6
16 TraesCS7B01G313600 chr2B 96.875 32 1 0 3 34 262526124 262526155 2.000000e-03 54.7
17 TraesCS7B01G313600 chr2B 100.000 29 0 0 6 34 704816291 704816263 2.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G313600 chr7B 560512901 560517129 4228 False 7810 7810 100.000 1 4229 1 chr7B.!!$F2 4228
1 TraesCS7B01G313600 chr7B 559630150 559630732 582 False 656 656 86.986 1076 1659 1 chr7B.!!$F1 583
2 TraesCS7B01G313600 chr7D 524314779 524318136 3357 False 5345 5345 95.444 860 4213 1 chr7D.!!$F2 3353
3 TraesCS7B01G313600 chr7D 523544636 523545346 710 False 909 909 89.733 952 1662 1 chr7D.!!$F1 710
4 TraesCS7B01G313600 chr7D 185183093 185183766 673 True 750 750 87.097 48 714 1 chr7D.!!$R1 666
5 TraesCS7B01G313600 chr7A 604379200 604382552 3352 False 5212 5212 94.763 860 4213 1 chr7A.!!$F1 3353
6 TraesCS7B01G313600 chr5A 689197238 689198035 797 True 1022 1022 89.826 34 833 1 chr5A.!!$R1 799
7 TraesCS7B01G313600 chr3D 41641755 41642382 627 True 977 977 94.754 234 861 1 chr3D.!!$R1 627
8 TraesCS7B01G313600 chr6A 74151634 74152180 546 False 843 843 94.384 860 1410 1 chr6A.!!$F1 550
9 TraesCS7B01G313600 chr6D 337241908 337242686 778 True 778 778 84.737 48 861 1 chr6D.!!$R1 813
10 TraesCS7B01G313600 chr6D 245978536 245979209 673 False 739 739 86.804 48 714 1 chr6D.!!$F1 666
11 TraesCS7B01G313600 chr5D 388604169 388604841 672 True 745 745 86.950 48 714 1 chr5D.!!$R1 666
12 TraesCS7B01G313600 chr6B 72431004 72431641 637 False 689 689 86.427 47 676 1 chr6B.!!$F1 629
13 TraesCS7B01G313600 chr1B 201721230 201721767 537 False 562 562 85.740 57 595 1 chr1B.!!$F1 538

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.311165 AACAGACAGACCGAGTCGTG 59.689 55.0 12.31 5.93 40.84 4.35 F
892 911 0.603707 AGTGTCACAATGAGCCACGG 60.604 55.0 5.62 0.00 31.19 4.94 F
894 913 0.682292 TGTCACAATGAGCCACGGTA 59.318 50.0 0.00 0.00 0.00 4.02 F
2593 2612 0.833287 AGCTATGGATCTTGTGCGGT 59.167 50.0 0.00 0.00 0.00 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1253 1272 1.204146 GTAGAGGAGGATTGGGTGCA 58.796 55.000 0.00 0.00 0.00 4.57 R
2553 2572 0.247460 CATCCAGAAGTCCACTGCGA 59.753 55.000 0.00 0.00 34.47 5.10 R
2663 2682 2.057316 CAGCATTTCGAGCTAGATCGG 58.943 52.381 28.28 14.38 41.14 4.18 R
3649 3684 1.553704 ACTTCGGCCTACTTACCCTTG 59.446 52.381 0.00 0.00 0.00 3.61 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.716814 AACAGACAGACCGAGTCGT 58.283 52.632 12.31 0.00 40.84 4.34
19 20 0.311165 AACAGACAGACCGAGTCGTG 59.689 55.000 12.31 5.93 40.84 4.35
20 21 1.442857 CAGACAGACCGAGTCGTGC 60.443 63.158 12.31 2.67 40.84 5.34
21 22 2.502080 GACAGACCGAGTCGTGCG 60.502 66.667 12.31 0.00 37.67 5.34
22 23 3.251318 GACAGACCGAGTCGTGCGT 62.251 63.158 12.31 1.82 37.67 5.24
23 24 2.502080 CAGACCGAGTCGTGCGTC 60.502 66.667 12.31 11.64 37.67 5.19
24 25 4.086178 AGACCGAGTCGTGCGTCG 62.086 66.667 12.31 0.00 37.67 5.12
25 26 4.081030 GACCGAGTCGTGCGTCGA 62.081 66.667 12.31 0.00 46.83 4.20
32 33 3.281395 TCGTGCGTCGAGGTGTGA 61.281 61.111 7.01 0.00 44.01 3.58
120 128 2.667481 ACGCATGCAAAATCCAAATTCG 59.333 40.909 19.57 0.00 0.00 3.34
152 162 5.916320 CACACGTACATATTATTAGACCGCA 59.084 40.000 0.00 0.00 0.00 5.69
204 214 7.102847 TGTACATGATATTAGACCACGACAA 57.897 36.000 0.00 0.00 0.00 3.18
222 232 7.066525 CCACGACAATAGTTGTTGGGTATTATT 59.933 37.037 13.09 0.00 45.21 1.40
224 234 8.203937 CGACAATAGTTGTTGGGTATTATTCA 57.796 34.615 2.75 0.00 45.52 2.57
261 271 7.946655 ATACGTGTTGATGATACACCTAATG 57.053 36.000 0.00 0.00 42.19 1.90
771 790 3.438183 AGATACCCCTGTGTACGTTCTT 58.562 45.455 0.00 0.00 0.00 2.52
888 907 1.071605 GTCGAGTGTCACAATGAGCC 58.928 55.000 5.62 0.00 0.00 4.70
892 911 0.603707 AGTGTCACAATGAGCCACGG 60.604 55.000 5.62 0.00 31.19 4.94
893 912 0.884704 GTGTCACAATGAGCCACGGT 60.885 55.000 0.00 0.00 0.00 4.83
894 913 0.682292 TGTCACAATGAGCCACGGTA 59.318 50.000 0.00 0.00 0.00 4.02
896 915 2.290008 TGTCACAATGAGCCACGGTATT 60.290 45.455 0.00 0.00 0.00 1.89
897 916 2.351726 GTCACAATGAGCCACGGTATTC 59.648 50.000 0.00 0.00 0.00 1.75
898 917 2.027653 TCACAATGAGCCACGGTATTCA 60.028 45.455 0.00 0.00 0.00 2.57
899 918 2.746904 CACAATGAGCCACGGTATTCAA 59.253 45.455 0.00 0.00 0.00 2.69
920 939 3.439857 AGATGGGCAGCTAAACAGAAA 57.560 42.857 0.00 0.00 0.00 2.52
942 961 1.293924 CGAGCCCACTTCATCATCAC 58.706 55.000 0.00 0.00 0.00 3.06
949 968 5.716228 AGCCCACTTCATCATCACAAAATAA 59.284 36.000 0.00 0.00 0.00 1.40
950 969 6.211184 AGCCCACTTCATCATCACAAAATAAA 59.789 34.615 0.00 0.00 0.00 1.40
1278 1297 1.833049 AATCCTCCTCTACCGGCGG 60.833 63.158 27.06 27.06 0.00 6.13
1404 1423 1.421410 CGTGCTTCCGTACCATGCTC 61.421 60.000 0.00 0.00 0.00 4.26
1500 1519 2.101233 GGCTTTCGACGAGGCTTCC 61.101 63.158 19.12 6.45 36.81 3.46
1629 1648 2.293122 CGCTTGGACTGGTTTGATTTCA 59.707 45.455 0.00 0.00 0.00 2.69
1632 1651 2.238521 TGGACTGGTTTGATTTCAGGC 58.761 47.619 0.00 0.00 35.89 4.85
1704 1723 1.546923 CTTTCTGATGGCATTGCACCA 59.453 47.619 11.39 0.14 42.61 4.17
2116 2135 5.399013 GTTTGCGTGCTGATAATTTTACCT 58.601 37.500 0.00 0.00 0.00 3.08
2553 2572 3.220110 CTGCATGATAGATTTGCTGGGT 58.780 45.455 0.00 0.00 37.28 4.51
2593 2612 0.833287 AGCTATGGATCTTGTGCGGT 59.167 50.000 0.00 0.00 0.00 5.68
2663 2682 2.433868 TGTAGAGTCCACAAGAACGC 57.566 50.000 0.00 0.00 0.00 4.84
2739 2758 4.655762 TGCTGTCTATGTCCAGATGTAC 57.344 45.455 0.00 0.00 0.00 2.90
2912 2931 7.172532 TCCACGCATAATGGAGATTATTGTAAC 59.827 37.037 0.00 0.00 41.47 2.50
2919 2938 6.920569 ATGGAGATTATTGTAACGTTGGAC 57.079 37.500 11.99 2.19 0.00 4.02
3075 3094 0.036875 GTCTAGCACCAAACCTGCCT 59.963 55.000 0.00 0.00 35.01 4.75
3165 3184 2.166829 TGGAACCGGGAAATCATTGTG 58.833 47.619 6.32 0.00 0.00 3.33
3198 3217 0.681243 GGTTCCATCACTTCAGGGGC 60.681 60.000 0.00 0.00 0.00 5.80
3286 3305 4.633565 GCTTGAAGGATGAGGAAACACTAG 59.366 45.833 0.00 0.00 0.00 2.57
3321 3341 9.376075 CTATTTCATCTTCAGAGTAGCTTTCAA 57.624 33.333 0.00 0.00 0.00 2.69
3408 3438 1.948145 CATCTTCTGAGAGCAATGGCC 59.052 52.381 0.00 0.00 42.56 5.36
3441 3471 4.398044 GGAAAAGAAGGTCAGTTGTGTCAA 59.602 41.667 0.00 0.00 0.00 3.18
3629 3664 5.630680 GTCACTTGTTGCCATGTTAATGAAG 59.369 40.000 0.00 0.00 35.67 3.02
3690 3725 4.651503 AGTCAATAGTCTAGGTGGGACATG 59.348 45.833 0.00 0.00 44.52 3.21
3722 3757 2.272471 GGCCTGCCCAGTAACTCC 59.728 66.667 0.00 0.00 0.00 3.85
3731 3766 1.609841 CCCAGTAACTCCGGTGGTTTC 60.610 57.143 17.41 13.50 0.00 2.78
3732 3767 1.346722 CCAGTAACTCCGGTGGTTTCT 59.653 52.381 17.41 15.09 0.00 2.52
3733 3768 2.224450 CCAGTAACTCCGGTGGTTTCTT 60.224 50.000 17.41 2.01 0.00 2.52
3734 3769 3.473625 CAGTAACTCCGGTGGTTTCTTT 58.526 45.455 17.41 1.37 0.00 2.52
3848 3883 3.440522 GTGAGGCAAAGTGGAATTCCTAC 59.559 47.826 24.73 19.38 36.82 3.18
3893 3928 7.500559 GTCTGGAATTCACTTTTATGGAGCTAT 59.499 37.037 7.93 0.00 0.00 2.97
3949 3984 3.550233 GCTGCAAACATGCTGATAGATGG 60.550 47.826 11.20 0.00 36.09 3.51
4038 4081 1.224592 CGAGGCTGGCTAACCCATT 59.775 57.895 2.77 0.00 44.33 3.16
4089 4139 3.769844 GGTGACTTCTCTAGATGTTGGGA 59.230 47.826 0.00 0.00 33.32 4.37
4101 4151 1.909700 TGTTGGGAGAAACATCCAGC 58.090 50.000 0.00 0.00 41.52 4.85
4115 4165 1.375013 CCAGCCACCATTTTGCAGC 60.375 57.895 0.00 0.00 0.00 5.25
4119 4169 2.093869 CAGCCACCATTTTGCAGCTATT 60.094 45.455 0.00 0.00 0.00 1.73
4127 4177 6.311200 CACCATTTTGCAGCTATTAAACTTCC 59.689 38.462 0.00 0.00 0.00 3.46
4128 4178 6.211384 ACCATTTTGCAGCTATTAAACTTCCT 59.789 34.615 0.00 0.00 0.00 3.36
4131 4181 9.638239 CATTTTGCAGCTATTAAACTTCCTTTA 57.362 29.630 0.00 0.00 0.00 1.85
4146 4196 8.514330 AACTTCCTTTATACGATATTTTGGCA 57.486 30.769 0.00 0.00 0.00 4.92
4185 4236 2.584236 AGGATGAAAGAGATGCCATGC 58.416 47.619 0.00 0.00 0.00 4.06
4186 4237 2.092049 AGGATGAAAGAGATGCCATGCA 60.092 45.455 0.00 0.00 44.86 3.96
4188 4239 1.100510 TGAAAGAGATGCCATGCAGC 58.899 50.000 0.00 0.00 45.98 5.25
4213 4264 4.379302 AGAAGCCAAGAAATGAAGGTCT 57.621 40.909 0.00 0.00 0.00 3.85
4214 4265 4.734266 AGAAGCCAAGAAATGAAGGTCTT 58.266 39.130 0.00 0.00 34.37 3.01
4215 4266 5.143369 AGAAGCCAAGAAATGAAGGTCTTT 58.857 37.500 0.00 0.00 31.66 2.52
4216 4267 5.600069 AGAAGCCAAGAAATGAAGGTCTTTT 59.400 36.000 0.00 0.00 31.66 2.27
4217 4268 5.876651 AGCCAAGAAATGAAGGTCTTTTT 57.123 34.783 0.00 0.00 31.66 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.311165 CACGACTCGGTCTGTCTGTT 59.689 55.000 2.98 0.00 32.70 3.16
1 2 1.950007 CACGACTCGGTCTGTCTGT 59.050 57.895 2.98 0.00 32.70 3.41
2 3 1.442857 GCACGACTCGGTCTGTCTG 60.443 63.158 2.98 0.00 32.70 3.51
3 4 2.955402 GCACGACTCGGTCTGTCT 59.045 61.111 2.98 0.00 32.70 3.41
4 5 2.502080 CGCACGACTCGGTCTGTC 60.502 66.667 2.98 0.00 0.00 3.51
5 6 3.251318 GACGCACGACTCGGTCTGT 62.251 63.158 2.98 0.00 0.00 3.41
6 7 2.502080 GACGCACGACTCGGTCTG 60.502 66.667 2.98 0.00 0.00 3.51
7 8 4.086178 CGACGCACGACTCGGTCT 62.086 66.667 2.98 0.00 45.77 3.85
8 9 3.978867 CTCGACGCACGACTCGGTC 62.979 68.421 2.98 0.19 46.45 4.79
9 10 4.086178 CTCGACGCACGACTCGGT 62.086 66.667 2.98 0.00 46.45 4.69
10 11 4.813526 CCTCGACGCACGACTCGG 62.814 72.222 2.98 0.00 46.45 4.63
11 12 4.086178 ACCTCGACGCACGACTCG 62.086 66.667 0.00 0.00 46.45 4.18
12 13 2.502080 CACCTCGACGCACGACTC 60.502 66.667 0.00 0.00 46.45 3.36
13 14 3.285215 ACACCTCGACGCACGACT 61.285 61.111 0.00 0.00 46.45 4.18
14 15 2.994143 TTCACACCTCGACGCACGAC 62.994 60.000 0.00 0.00 46.45 4.34
16 17 1.733041 ATTCACACCTCGACGCACG 60.733 57.895 0.00 0.00 44.09 5.34
17 18 0.666274 TCATTCACACCTCGACGCAC 60.666 55.000 0.00 0.00 0.00 5.34
18 19 0.388520 CTCATTCACACCTCGACGCA 60.389 55.000 0.00 0.00 0.00 5.24
19 20 0.109272 TCTCATTCACACCTCGACGC 60.109 55.000 0.00 0.00 0.00 5.19
20 21 2.568696 ATCTCATTCACACCTCGACG 57.431 50.000 0.00 0.00 0.00 5.12
21 22 4.744570 TGTTATCTCATTCACACCTCGAC 58.255 43.478 0.00 0.00 0.00 4.20
22 23 5.127031 TGATGTTATCTCATTCACACCTCGA 59.873 40.000 0.00 0.00 0.00 4.04
23 24 5.351458 TGATGTTATCTCATTCACACCTCG 58.649 41.667 0.00 0.00 0.00 4.63
24 25 6.238320 GCTTGATGTTATCTCATTCACACCTC 60.238 42.308 0.00 0.00 0.00 3.85
25 26 5.587844 GCTTGATGTTATCTCATTCACACCT 59.412 40.000 0.00 0.00 0.00 4.00
26 27 5.355071 TGCTTGATGTTATCTCATTCACACC 59.645 40.000 0.00 0.00 0.00 4.16
27 28 6.426980 TGCTTGATGTTATCTCATTCACAC 57.573 37.500 0.00 0.00 0.00 3.82
28 29 7.634671 AATGCTTGATGTTATCTCATTCACA 57.365 32.000 0.00 0.00 0.00 3.58
72 76 4.344968 AGTTGCCTCCAAATAAAGCAAGTT 59.655 37.500 0.00 0.00 42.80 2.66
98 106 3.241741 CGAATTTGGATTTTGCATGCGTC 60.242 43.478 14.09 8.31 0.00 5.19
260 270 9.868277 AGTTCTTCATGTTTTTGTGTATTTTCA 57.132 25.926 0.00 0.00 0.00 2.69
771 790 5.006649 GCGTGCATATTTCTCTTGATGTACA 59.993 40.000 0.00 0.00 35.42 2.90
781 800 3.403038 AGGGTATGCGTGCATATTTCTC 58.597 45.455 16.79 5.44 40.49 2.87
783 802 2.484264 GGAGGGTATGCGTGCATATTTC 59.516 50.000 16.79 13.63 40.49 2.17
789 808 0.464036 CTTAGGAGGGTATGCGTGCA 59.536 55.000 0.00 0.00 0.00 4.57
853 872 2.930040 CTCGACCAAACGCACATAGATT 59.070 45.455 0.00 0.00 0.00 2.40
888 907 2.355756 CTGCCCATCTTTGAATACCGTG 59.644 50.000 0.00 0.00 0.00 4.94
892 911 5.125417 TGTTTAGCTGCCCATCTTTGAATAC 59.875 40.000 0.00 0.00 0.00 1.89
893 912 5.260424 TGTTTAGCTGCCCATCTTTGAATA 58.740 37.500 0.00 0.00 0.00 1.75
894 913 4.088634 TGTTTAGCTGCCCATCTTTGAAT 58.911 39.130 0.00 0.00 0.00 2.57
896 915 3.084039 CTGTTTAGCTGCCCATCTTTGA 58.916 45.455 0.00 0.00 0.00 2.69
897 916 3.084039 TCTGTTTAGCTGCCCATCTTTG 58.916 45.455 0.00 0.00 0.00 2.77
898 917 3.439857 TCTGTTTAGCTGCCCATCTTT 57.560 42.857 0.00 0.00 0.00 2.52
899 918 3.439857 TTCTGTTTAGCTGCCCATCTT 57.560 42.857 0.00 0.00 0.00 2.40
920 939 0.615331 ATGATGAAGTGGGCTCGTGT 59.385 50.000 0.00 0.00 0.00 4.49
1253 1272 1.204146 GTAGAGGAGGATTGGGTGCA 58.796 55.000 0.00 0.00 0.00 4.57
1260 1279 3.857764 CGCCGGTAGAGGAGGATT 58.142 61.111 1.90 0.00 0.00 3.01
1302 1321 2.029964 TGGAACGTGAAGGCGTCC 59.970 61.111 0.00 0.00 45.00 4.79
1480 1499 2.781595 GAAGCCTCGTCGAAAGCCCA 62.782 60.000 12.06 0.00 0.00 5.36
1704 1723 2.420129 GCCAATCACGGTAACCTCATCT 60.420 50.000 0.00 0.00 0.00 2.90
2076 2095 3.376546 GCAAACCATGTCTCCTCATCTTC 59.623 47.826 0.00 0.00 0.00 2.87
2116 2135 0.251165 GCAGTTAGAAGGCCCACCAA 60.251 55.000 0.00 0.00 39.06 3.67
2553 2572 0.247460 CATCCAGAAGTCCACTGCGA 59.753 55.000 0.00 0.00 34.47 5.10
2663 2682 2.057316 CAGCATTTCGAGCTAGATCGG 58.943 52.381 28.28 14.38 41.14 4.18
2912 2931 1.189403 GCGTCTAATCTCGTCCAACG 58.811 55.000 0.00 0.00 44.19 4.10
2919 2938 4.421948 ACTTTAACCTGCGTCTAATCTCG 58.578 43.478 0.00 0.00 0.00 4.04
3075 3094 7.161404 CCCGGAGATTCTTTATGATATGAACA 58.839 38.462 0.73 0.00 0.00 3.18
3198 3217 1.469703 TCATTGCAAGAACATGCTCCG 59.530 47.619 4.94 0.00 46.54 4.63
3321 3341 1.077716 GATACCTTTGGCCACGGCT 60.078 57.895 18.09 7.69 41.60 5.52
3323 3343 0.034477 AAGGATACCTTTGGCCACGG 60.034 55.000 3.88 12.43 41.69 4.94
3342 3372 2.542020 TGGCACATCGAAGAGAACAA 57.458 45.000 0.00 0.00 43.63 2.83
3408 3438 6.712547 ACTGACCTTCTTTTCCTGATAAAGTG 59.287 38.462 0.00 0.00 34.86 3.16
3649 3684 1.553704 ACTTCGGCCTACTTACCCTTG 59.446 52.381 0.00 0.00 0.00 3.61
3690 3725 2.417515 GCAGGCCTGTTCAGTAGTCTAC 60.418 54.545 32.81 8.48 0.00 2.59
3722 3757 4.351192 CACAGAAAAGAAAGAAACCACCG 58.649 43.478 0.00 0.00 0.00 4.94
3731 3766 4.986659 CCTGAAATGCCACAGAAAAGAAAG 59.013 41.667 0.00 0.00 36.38 2.62
3732 3767 4.202243 CCCTGAAATGCCACAGAAAAGAAA 60.202 41.667 0.00 0.00 36.38 2.52
3733 3768 3.321682 CCCTGAAATGCCACAGAAAAGAA 59.678 43.478 0.00 0.00 36.38 2.52
3734 3769 2.892852 CCCTGAAATGCCACAGAAAAGA 59.107 45.455 0.00 0.00 36.38 2.52
3848 3883 2.859992 CTTGGGAGAAAGGAAGCCG 58.140 57.895 0.00 0.00 0.00 5.52
3949 3984 1.826096 GTACCACTCTCCTTCTCCCAC 59.174 57.143 0.00 0.00 0.00 4.61
4089 4139 2.610438 AATGGTGGCTGGATGTTTCT 57.390 45.000 0.00 0.00 0.00 2.52
4101 4151 5.723295 AGTTTAATAGCTGCAAAATGGTGG 58.277 37.500 1.02 0.00 0.00 4.61
4138 4188 7.085746 GCAGCATTTTATTTCTTTGCCAAAAT 58.914 30.769 0.00 0.00 33.85 1.82
4141 4191 5.061853 TGCAGCATTTTATTTCTTTGCCAA 58.938 33.333 0.00 0.00 33.85 4.52
4145 4195 7.332430 TCATCCTTGCAGCATTTTATTTCTTTG 59.668 33.333 0.00 0.00 0.00 2.77
4146 4196 7.388437 TCATCCTTGCAGCATTTTATTTCTTT 58.612 30.769 0.00 0.00 0.00 2.52
4153 4203 5.711506 TCTCTTTCATCCTTGCAGCATTTTA 59.288 36.000 0.00 0.00 0.00 1.52
4155 4205 4.084287 TCTCTTTCATCCTTGCAGCATTT 58.916 39.130 0.00 0.00 0.00 2.32
4188 4239 6.432472 AGACCTTCATTTCTTGGCTTCTTTAG 59.568 38.462 0.00 0.00 0.00 1.85
4189 4240 6.306987 AGACCTTCATTTCTTGGCTTCTTTA 58.693 36.000 0.00 0.00 0.00 1.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.