Multiple sequence alignment - TraesCS7B01G311300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G311300 chr7B 100.000 3356 0 0 1 3356 556609737 556606382 0.000000e+00 6198.0
1 TraesCS7B01G311300 chr7D 94.348 2866 92 28 535 3356 522811721 522808882 0.000000e+00 4331.0
2 TraesCS7B01G311300 chr7D 90.769 65 4 1 477 539 522811809 522811745 5.970000e-13 86.1
3 TraesCS7B01G311300 chr7A 92.234 2936 124 39 488 3353 602988920 602986019 0.000000e+00 4063.0
4 TraesCS7B01G311300 chr4A 97.872 94 1 1 1179 1272 646106543 646106635 9.640000e-36 161.0
5 TraesCS7B01G311300 chr4A 97.701 87 2 0 1182 1268 647943180 647943094 2.090000e-32 150.0
6 TraesCS7B01G311300 chr3B 75.538 372 56 24 116 460 49871175 49870812 2.090000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G311300 chr7B 556606382 556609737 3355 True 6198.00 6198 100.0000 1 3356 1 chr7B.!!$R1 3355
1 TraesCS7B01G311300 chr7D 522808882 522811809 2927 True 2208.55 4331 92.5585 477 3356 2 chr7D.!!$R1 2879
2 TraesCS7B01G311300 chr7A 602986019 602988920 2901 True 4063.00 4063 92.2340 488 3353 1 chr7A.!!$R1 2865

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
291 292 0.033109 GGAAGGGGGATTTCAGTGGG 60.033 60.0 0.00 0.0 0.00 4.61 F
292 293 0.033109 GAAGGGGGATTTCAGTGGGG 60.033 60.0 0.00 0.0 0.00 4.96 F
362 363 0.036875 CTTCCCCGAGTTTGCCTTCT 59.963 55.0 0.00 0.0 0.00 2.85 F
368 369 0.040067 CGAGTTTGCCTTCTGGTTGC 60.040 55.0 0.00 0.0 35.27 4.17 F
2293 2358 0.104855 TGAAGTCGCAGCTCACTTGT 59.895 50.0 10.59 0.0 32.83 3.16 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2290 2355 0.331278 AATTCATCCCGGAGCCACAA 59.669 50.000 0.73 0.0 0.00 3.33 R
2293 2358 1.531748 GGAATTCATCCCGGAGCCA 59.468 57.895 0.73 0.0 43.00 4.75 R
2308 2373 0.401356 TGTGCAATGCAGAGGAGGAA 59.599 50.000 8.73 0.0 40.08 3.36 R
2338 2407 7.874016 AGCTCTTGATTAAAATTTGCAATGTGA 59.126 29.630 0.00 0.0 0.00 3.58 R
3128 3241 0.037734 GAAAAGGGAAAGCGGAGGGA 59.962 55.000 0.00 0.0 0.00 4.20 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 1.679680 AGGCTCAATGGCATTTGATCG 59.320 47.619 10.65 0.00 44.55 3.69
21 22 1.677576 GGCTCAATGGCATTTGATCGA 59.322 47.619 10.65 3.51 41.37 3.59
22 23 2.099592 GGCTCAATGGCATTTGATCGAA 59.900 45.455 10.65 0.00 41.37 3.71
23 24 3.111098 GCTCAATGGCATTTGATCGAAC 58.889 45.455 10.65 0.00 35.20 3.95
24 25 3.427909 GCTCAATGGCATTTGATCGAACA 60.428 43.478 10.65 0.00 35.20 3.18
25 26 4.735578 GCTCAATGGCATTTGATCGAACAT 60.736 41.667 10.65 0.00 35.20 2.71
26 27 4.923893 TCAATGGCATTTGATCGAACATC 58.076 39.130 10.65 0.00 30.82 3.06
27 28 4.641541 TCAATGGCATTTGATCGAACATCT 59.358 37.500 10.65 0.00 30.82 2.90
28 29 4.563337 ATGGCATTTGATCGAACATCTG 57.437 40.909 0.00 0.00 0.00 2.90
29 30 2.097954 TGGCATTTGATCGAACATCTGC 59.902 45.455 16.65 16.65 0.00 4.26
30 31 2.542411 GGCATTTGATCGAACATCTGCC 60.542 50.000 23.71 23.71 39.04 4.85
31 32 2.852143 GCATTTGATCGAACATCTGCCG 60.852 50.000 14.98 0.00 0.00 5.69
32 33 2.378445 TTTGATCGAACATCTGCCGA 57.622 45.000 0.00 0.00 36.72 5.54
33 34 1.926561 TTGATCGAACATCTGCCGAG 58.073 50.000 0.00 0.00 35.70 4.63
34 35 0.817654 TGATCGAACATCTGCCGAGT 59.182 50.000 0.00 0.00 35.70 4.18
35 36 1.203928 GATCGAACATCTGCCGAGTG 58.796 55.000 0.00 0.00 35.70 3.51
36 37 0.807667 ATCGAACATCTGCCGAGTGC 60.808 55.000 0.00 0.00 41.77 4.40
37 38 2.792290 CGAACATCTGCCGAGTGCG 61.792 63.158 0.00 0.00 45.60 5.34
61 62 3.706140 GTCATGGACGGCATCGAC 58.294 61.111 0.00 0.00 40.11 4.20
62 63 1.153647 GTCATGGACGGCATCGACA 60.154 57.895 0.00 0.00 40.11 4.35
63 64 1.141665 TCATGGACGGCATCGACAG 59.858 57.895 0.00 0.00 40.11 3.51
64 65 1.884464 CATGGACGGCATCGACAGG 60.884 63.158 0.00 0.00 40.11 4.00
65 66 3.094062 ATGGACGGCATCGACAGGG 62.094 63.158 0.00 0.00 40.11 4.45
66 67 4.530857 GGACGGCATCGACAGGGG 62.531 72.222 0.00 0.00 40.11 4.79
67 68 3.771160 GACGGCATCGACAGGGGT 61.771 66.667 0.00 0.00 40.11 4.95
68 69 4.082523 ACGGCATCGACAGGGGTG 62.083 66.667 0.00 0.00 40.11 4.61
69 70 4.082523 CGGCATCGACAGGGGTGT 62.083 66.667 0.00 0.00 39.00 4.16
70 71 2.436646 GGCATCGACAGGGGTGTG 60.437 66.667 0.00 0.00 0.00 3.82
71 72 2.436646 GCATCGACAGGGGTGTGG 60.437 66.667 0.00 0.00 0.00 4.17
72 73 2.954684 GCATCGACAGGGGTGTGGA 61.955 63.158 0.00 0.00 0.00 4.02
73 74 1.219124 CATCGACAGGGGTGTGGAG 59.781 63.158 0.00 0.00 30.49 3.86
74 75 1.990060 ATCGACAGGGGTGTGGAGG 60.990 63.158 0.00 0.00 30.49 4.30
75 76 3.706373 CGACAGGGGTGTGGAGGG 61.706 72.222 0.00 0.00 0.00 4.30
76 77 2.529389 GACAGGGGTGTGGAGGGT 60.529 66.667 0.00 0.00 0.00 4.34
77 78 2.529389 ACAGGGGTGTGGAGGGTC 60.529 66.667 0.00 0.00 0.00 4.46
78 79 2.203998 CAGGGGTGTGGAGGGTCT 60.204 66.667 0.00 0.00 0.00 3.85
79 80 2.122954 AGGGGTGTGGAGGGTCTC 59.877 66.667 0.00 0.00 0.00 3.36
80 81 2.122954 GGGGTGTGGAGGGTCTCT 59.877 66.667 0.00 0.00 0.00 3.10
81 82 2.294078 GGGGTGTGGAGGGTCTCTG 61.294 68.421 0.00 0.00 0.00 3.35
82 83 1.229209 GGGTGTGGAGGGTCTCTGA 60.229 63.158 0.00 0.00 0.00 3.27
83 84 1.545706 GGGTGTGGAGGGTCTCTGAC 61.546 65.000 0.00 0.00 0.00 3.51
84 85 0.543174 GGTGTGGAGGGTCTCTGACT 60.543 60.000 0.00 0.00 32.47 3.41
85 86 0.605589 GTGTGGAGGGTCTCTGACTG 59.394 60.000 0.00 0.00 32.47 3.51
86 87 1.188219 TGTGGAGGGTCTCTGACTGC 61.188 60.000 0.00 0.00 32.47 4.40
87 88 1.979155 TGGAGGGTCTCTGACTGCG 60.979 63.158 0.00 0.00 32.47 5.18
88 89 2.716017 GGAGGGTCTCTGACTGCGG 61.716 68.421 0.00 0.00 32.47 5.69
89 90 1.679305 GAGGGTCTCTGACTGCGGA 60.679 63.158 0.00 0.00 32.47 5.54
90 91 1.662438 GAGGGTCTCTGACTGCGGAG 61.662 65.000 0.85 0.85 46.81 4.63
91 92 2.716017 GGGTCTCTGACTGCGGAGG 61.716 68.421 9.36 0.00 45.72 4.30
92 93 2.716017 GGTCTCTGACTGCGGAGGG 61.716 68.421 9.36 0.00 45.72 4.30
93 94 1.679305 GTCTCTGACTGCGGAGGGA 60.679 63.158 9.36 2.69 45.72 4.20
94 95 1.679305 TCTCTGACTGCGGAGGGAC 60.679 63.158 9.36 0.00 45.72 4.46
95 96 2.143575 TCTCTGACTGCGGAGGGACT 62.144 60.000 9.36 0.00 45.72 3.85
108 109 2.661176 AGGGACTCCTGGGTGAATAA 57.339 50.000 0.00 0.00 42.98 1.40
109 110 2.482494 AGGGACTCCTGGGTGAATAAG 58.518 52.381 0.00 0.00 42.98 1.73
110 111 1.490910 GGGACTCCTGGGTGAATAAGG 59.509 57.143 0.00 0.00 0.00 2.69
111 112 1.490910 GGACTCCTGGGTGAATAAGGG 59.509 57.143 0.00 0.00 0.00 3.95
112 113 2.197465 GACTCCTGGGTGAATAAGGGT 58.803 52.381 0.00 0.00 0.00 4.34
113 114 2.170817 GACTCCTGGGTGAATAAGGGTC 59.829 54.545 0.00 0.00 0.00 4.46
114 115 1.139058 CTCCTGGGTGAATAAGGGTCG 59.861 57.143 0.00 0.00 0.00 4.79
115 116 0.463833 CCTGGGTGAATAAGGGTCGC 60.464 60.000 0.00 0.00 0.00 5.19
116 117 0.251916 CTGGGTGAATAAGGGTCGCA 59.748 55.000 0.00 0.00 0.00 5.10
117 118 0.693622 TGGGTGAATAAGGGTCGCAA 59.306 50.000 0.00 0.00 0.00 4.85
118 119 1.339631 TGGGTGAATAAGGGTCGCAAG 60.340 52.381 0.00 0.00 0.00 4.01
119 120 1.379527 GGTGAATAAGGGTCGCAAGG 58.620 55.000 0.00 0.00 38.47 3.61
120 121 0.733150 GTGAATAAGGGTCGCAAGGC 59.267 55.000 0.00 0.00 45.19 4.35
131 132 3.890674 GCAAGGCGTAGTCCAAGG 58.109 61.111 0.00 0.00 0.00 3.61
132 133 2.399356 GCAAGGCGTAGTCCAAGGC 61.399 63.158 0.00 0.00 0.00 4.35
133 134 2.100631 CAAGGCGTAGTCCAAGGCG 61.101 63.158 0.00 0.00 36.28 5.52
134 135 3.310860 AAGGCGTAGTCCAAGGCGG 62.311 63.158 0.00 0.00 36.28 6.13
135 136 4.832608 GGCGTAGTCCAAGGCGGG 62.833 72.222 0.00 0.00 34.36 6.13
137 138 4.077184 CGTAGTCCAAGGCGGGCA 62.077 66.667 3.78 0.00 44.49 5.36
138 139 2.125106 GTAGTCCAAGGCGGGCAG 60.125 66.667 3.78 0.00 44.49 4.85
139 140 2.606519 TAGTCCAAGGCGGGCAGT 60.607 61.111 3.78 0.00 44.49 4.40
140 141 2.656069 TAGTCCAAGGCGGGCAGTC 61.656 63.158 3.78 0.00 44.49 3.51
160 161 3.384532 GTGGGCGGGGTCTACGAA 61.385 66.667 0.00 0.00 0.00 3.85
161 162 3.384532 TGGGCGGGGTCTACGAAC 61.385 66.667 0.00 0.00 0.00 3.95
162 163 4.503314 GGGCGGGGTCTACGAACG 62.503 72.222 0.00 0.00 0.00 3.95
163 164 3.752339 GGCGGGGTCTACGAACGT 61.752 66.667 5.03 5.03 0.00 3.99
164 165 2.259511 GCGGGGTCTACGAACGTT 59.740 61.111 0.00 0.00 0.00 3.99
165 166 1.803117 GCGGGGTCTACGAACGTTC 60.803 63.158 18.47 18.47 0.00 3.95
177 178 1.641577 GAACGTTCGAGGATTCCTGG 58.358 55.000 13.36 9.40 31.76 4.45
178 179 0.974383 AACGTTCGAGGATTCCTGGT 59.026 50.000 10.74 0.00 31.76 4.00
179 180 0.246635 ACGTTCGAGGATTCCTGGTG 59.753 55.000 10.74 6.41 31.76 4.17
180 181 0.460284 CGTTCGAGGATTCCTGGTGG 60.460 60.000 10.74 0.00 31.76 4.61
181 182 0.744771 GTTCGAGGATTCCTGGTGGC 60.745 60.000 10.74 0.59 31.76 5.01
182 183 2.202932 CGAGGATTCCTGGTGGCG 60.203 66.667 10.74 2.98 31.76 5.69
183 184 2.990479 GAGGATTCCTGGTGGCGT 59.010 61.111 10.74 0.00 31.76 5.68
184 185 1.153349 GAGGATTCCTGGTGGCGTC 60.153 63.158 10.74 0.00 31.76 5.19
185 186 2.124695 GGATTCCTGGTGGCGTCC 60.125 66.667 0.00 0.00 32.35 4.79
186 187 2.511600 GATTCCTGGTGGCGTCCG 60.512 66.667 0.00 0.00 0.00 4.79
187 188 3.000819 ATTCCTGGTGGCGTCCGA 61.001 61.111 0.00 0.00 0.00 4.55
188 189 2.515996 GATTCCTGGTGGCGTCCGAA 62.516 60.000 0.00 0.00 0.00 4.30
189 190 2.521958 ATTCCTGGTGGCGTCCGAAG 62.522 60.000 0.00 0.00 0.00 3.79
190 191 3.691342 CCTGGTGGCGTCCGAAGA 61.691 66.667 0.00 0.00 0.00 2.87
191 192 2.125912 CTGGTGGCGTCCGAAGAG 60.126 66.667 0.00 0.00 0.00 2.85
192 193 3.649277 CTGGTGGCGTCCGAAGAGG 62.649 68.421 0.00 0.00 42.97 3.69
193 194 3.692406 GGTGGCGTCCGAAGAGGT 61.692 66.667 0.00 0.00 41.99 3.85
194 195 2.345760 GGTGGCGTCCGAAGAGGTA 61.346 63.158 0.00 0.00 41.99 3.08
195 196 1.153881 GTGGCGTCCGAAGAGGTAC 60.154 63.158 0.00 0.00 41.99 3.34
196 197 1.604308 TGGCGTCCGAAGAGGTACA 60.604 57.895 0.00 0.00 41.99 2.90
197 198 1.180456 TGGCGTCCGAAGAGGTACAA 61.180 55.000 0.00 0.00 41.99 2.41
198 199 0.735287 GGCGTCCGAAGAGGTACAAC 60.735 60.000 0.00 0.00 41.99 3.32
199 200 1.069378 GCGTCCGAAGAGGTACAACG 61.069 60.000 0.00 0.00 41.99 4.10
200 201 0.518636 CGTCCGAAGAGGTACAACGA 59.481 55.000 0.00 0.00 38.37 3.85
201 202 1.131883 CGTCCGAAGAGGTACAACGAT 59.868 52.381 0.00 0.00 38.37 3.73
202 203 2.527100 GTCCGAAGAGGTACAACGATG 58.473 52.381 0.00 0.00 41.99 3.84
203 204 2.163010 GTCCGAAGAGGTACAACGATGA 59.837 50.000 0.00 0.00 41.99 2.92
204 205 2.163010 TCCGAAGAGGTACAACGATGAC 59.837 50.000 0.00 0.00 41.99 3.06
205 206 2.174764 CGAAGAGGTACAACGATGACG 58.825 52.381 0.00 0.00 45.75 4.35
206 207 5.504806 CCGAAGAGGTACAACGATGACGT 62.505 52.174 0.00 0.00 44.62 4.34
229 230 3.785859 GGCGAGGGGTGCAGATGA 61.786 66.667 0.00 0.00 0.00 2.92
230 231 2.268920 GCGAGGGGTGCAGATGAA 59.731 61.111 0.00 0.00 0.00 2.57
231 232 1.377202 GCGAGGGGTGCAGATGAAA 60.377 57.895 0.00 0.00 0.00 2.69
232 233 1.372087 GCGAGGGGTGCAGATGAAAG 61.372 60.000 0.00 0.00 0.00 2.62
233 234 0.745845 CGAGGGGTGCAGATGAAAGG 60.746 60.000 0.00 0.00 0.00 3.11
234 235 0.620556 GAGGGGTGCAGATGAAAGGA 59.379 55.000 0.00 0.00 0.00 3.36
235 236 1.004745 GAGGGGTGCAGATGAAAGGAA 59.995 52.381 0.00 0.00 0.00 3.36
236 237 1.005215 AGGGGTGCAGATGAAAGGAAG 59.995 52.381 0.00 0.00 0.00 3.46
237 238 1.467920 GGGTGCAGATGAAAGGAAGG 58.532 55.000 0.00 0.00 0.00 3.46
238 239 1.467920 GGTGCAGATGAAAGGAAGGG 58.532 55.000 0.00 0.00 0.00 3.95
239 240 1.004745 GGTGCAGATGAAAGGAAGGGA 59.995 52.381 0.00 0.00 0.00 4.20
240 241 2.363683 GTGCAGATGAAAGGAAGGGAG 58.636 52.381 0.00 0.00 0.00 4.30
241 242 1.283029 TGCAGATGAAAGGAAGGGAGG 59.717 52.381 0.00 0.00 0.00 4.30
242 243 1.561542 GCAGATGAAAGGAAGGGAGGA 59.438 52.381 0.00 0.00 0.00 3.71
243 244 2.421248 GCAGATGAAAGGAAGGGAGGAG 60.421 54.545 0.00 0.00 0.00 3.69
244 245 1.843206 AGATGAAAGGAAGGGAGGAGC 59.157 52.381 0.00 0.00 0.00 4.70
245 246 1.561542 GATGAAAGGAAGGGAGGAGCA 59.438 52.381 0.00 0.00 0.00 4.26
246 247 1.673767 TGAAAGGAAGGGAGGAGCAT 58.326 50.000 0.00 0.00 0.00 3.79
247 248 1.283029 TGAAAGGAAGGGAGGAGCATG 59.717 52.381 0.00 0.00 0.00 4.06
248 249 0.627986 AAAGGAAGGGAGGAGCATGG 59.372 55.000 0.00 0.00 0.00 3.66
249 250 1.284841 AAGGAAGGGAGGAGCATGGG 61.285 60.000 0.00 0.00 0.00 4.00
250 251 2.003548 GGAAGGGAGGAGCATGGGT 61.004 63.158 0.00 0.00 0.00 4.51
251 252 1.225704 GAAGGGAGGAGCATGGGTG 59.774 63.158 0.00 0.00 0.00 4.61
252 253 2.276309 GAAGGGAGGAGCATGGGTGG 62.276 65.000 0.00 0.00 0.00 4.61
253 254 2.692368 GGGAGGAGCATGGGTGGA 60.692 66.667 0.00 0.00 0.00 4.02
254 255 2.750657 GGGAGGAGCATGGGTGGAG 61.751 68.421 0.00 0.00 0.00 3.86
255 256 1.997874 GGAGGAGCATGGGTGGAGT 60.998 63.158 0.00 0.00 0.00 3.85
256 257 1.222936 GAGGAGCATGGGTGGAGTG 59.777 63.158 0.00 0.00 0.00 3.51
257 258 2.262774 GAGGAGCATGGGTGGAGTGG 62.263 65.000 0.00 0.00 0.00 4.00
258 259 2.300967 GGAGCATGGGTGGAGTGGA 61.301 63.158 0.00 0.00 0.00 4.02
259 260 1.685224 GAGCATGGGTGGAGTGGAA 59.315 57.895 0.00 0.00 0.00 3.53
260 261 0.393537 GAGCATGGGTGGAGTGGAAG 60.394 60.000 0.00 0.00 0.00 3.46
261 262 0.842030 AGCATGGGTGGAGTGGAAGA 60.842 55.000 0.00 0.00 0.00 2.87
262 263 0.038166 GCATGGGTGGAGTGGAAGAA 59.962 55.000 0.00 0.00 0.00 2.52
263 264 1.547675 GCATGGGTGGAGTGGAAGAAA 60.548 52.381 0.00 0.00 0.00 2.52
264 265 2.875296 CATGGGTGGAGTGGAAGAAAA 58.125 47.619 0.00 0.00 0.00 2.29
265 266 2.656947 TGGGTGGAGTGGAAGAAAAG 57.343 50.000 0.00 0.00 0.00 2.27
266 267 2.131854 TGGGTGGAGTGGAAGAAAAGA 58.868 47.619 0.00 0.00 0.00 2.52
267 268 2.512056 TGGGTGGAGTGGAAGAAAAGAA 59.488 45.455 0.00 0.00 0.00 2.52
268 269 3.149981 GGGTGGAGTGGAAGAAAAGAAG 58.850 50.000 0.00 0.00 0.00 2.85
269 270 3.181443 GGGTGGAGTGGAAGAAAAGAAGA 60.181 47.826 0.00 0.00 0.00 2.87
270 271 3.815962 GGTGGAGTGGAAGAAAAGAAGAC 59.184 47.826 0.00 0.00 0.00 3.01
271 272 3.815962 GTGGAGTGGAAGAAAAGAAGACC 59.184 47.826 0.00 0.00 0.00 3.85
272 273 3.067833 GGAGTGGAAGAAAAGAAGACCG 58.932 50.000 0.00 0.00 0.00 4.79
273 274 3.067833 GAGTGGAAGAAAAGAAGACCGG 58.932 50.000 0.00 0.00 0.00 5.28
274 275 2.704065 AGTGGAAGAAAAGAAGACCGGA 59.296 45.455 9.46 0.00 0.00 5.14
275 276 3.135895 AGTGGAAGAAAAGAAGACCGGAA 59.864 43.478 9.46 0.00 0.00 4.30
276 277 3.498777 GTGGAAGAAAAGAAGACCGGAAG 59.501 47.826 9.46 0.00 0.00 3.46
289 290 3.175133 CGGAAGGGGGATTTCAGTG 57.825 57.895 0.00 0.00 0.00 3.66
290 291 0.394352 CGGAAGGGGGATTTCAGTGG 60.394 60.000 0.00 0.00 0.00 4.00
291 292 0.033109 GGAAGGGGGATTTCAGTGGG 60.033 60.000 0.00 0.00 0.00 4.61
292 293 0.033109 GAAGGGGGATTTCAGTGGGG 60.033 60.000 0.00 0.00 0.00 4.96
293 294 0.780090 AAGGGGGATTTCAGTGGGGT 60.780 55.000 0.00 0.00 0.00 4.95
294 295 1.000359 GGGGGATTTCAGTGGGGTG 60.000 63.158 0.00 0.00 0.00 4.61
295 296 1.774300 GGGGATTTCAGTGGGGTGT 59.226 57.895 0.00 0.00 0.00 4.16
296 297 0.323451 GGGGATTTCAGTGGGGTGTC 60.323 60.000 0.00 0.00 0.00 3.67
297 298 0.676782 GGGATTTCAGTGGGGTGTCG 60.677 60.000 0.00 0.00 0.00 4.35
298 299 0.676782 GGATTTCAGTGGGGTGTCGG 60.677 60.000 0.00 0.00 0.00 4.79
299 300 0.323629 GATTTCAGTGGGGTGTCGGA 59.676 55.000 0.00 0.00 0.00 4.55
300 301 0.324943 ATTTCAGTGGGGTGTCGGAG 59.675 55.000 0.00 0.00 0.00 4.63
301 302 1.052124 TTTCAGTGGGGTGTCGGAGT 61.052 55.000 0.00 0.00 0.00 3.85
302 303 1.469335 TTCAGTGGGGTGTCGGAGTC 61.469 60.000 0.00 0.00 0.00 3.36
303 304 2.603776 AGTGGGGTGTCGGAGTCC 60.604 66.667 0.00 0.00 0.00 3.85
304 305 2.603776 GTGGGGTGTCGGAGTCCT 60.604 66.667 7.77 0.00 0.00 3.85
305 306 1.304713 GTGGGGTGTCGGAGTCCTA 60.305 63.158 7.77 0.00 0.00 2.94
306 307 1.304713 TGGGGTGTCGGAGTCCTAC 60.305 63.158 7.77 7.30 0.00 3.18
307 308 2.413142 GGGGTGTCGGAGTCCTACG 61.413 68.421 7.77 0.00 38.52 3.51
308 309 1.676967 GGGTGTCGGAGTCCTACGT 60.677 63.158 7.77 0.00 38.28 3.57
309 310 1.505353 GGTGTCGGAGTCCTACGTG 59.495 63.158 7.77 0.00 38.28 4.49
310 311 0.957395 GGTGTCGGAGTCCTACGTGA 60.957 60.000 7.77 0.00 38.28 4.35
311 312 1.093159 GTGTCGGAGTCCTACGTGAT 58.907 55.000 7.77 0.00 38.28 3.06
312 313 1.471684 GTGTCGGAGTCCTACGTGATT 59.528 52.381 7.77 0.00 38.28 2.57
313 314 1.471287 TGTCGGAGTCCTACGTGATTG 59.529 52.381 7.77 0.00 38.28 2.67
314 315 1.100510 TCGGAGTCCTACGTGATTGG 58.899 55.000 7.77 0.00 38.28 3.16
315 316 0.815734 CGGAGTCCTACGTGATTGGT 59.184 55.000 7.77 0.00 30.94 3.67
316 317 1.469251 CGGAGTCCTACGTGATTGGTG 60.469 57.143 7.77 0.00 30.94 4.17
317 318 1.549170 GGAGTCCTACGTGATTGGTGT 59.451 52.381 0.41 0.00 0.00 4.16
318 319 2.416972 GGAGTCCTACGTGATTGGTGTC 60.417 54.545 0.41 0.00 0.00 3.67
319 320 1.549170 AGTCCTACGTGATTGGTGTCC 59.451 52.381 0.00 0.00 0.00 4.02
320 321 1.274167 GTCCTACGTGATTGGTGTCCA 59.726 52.381 0.00 0.00 0.00 4.02
321 322 1.274167 TCCTACGTGATTGGTGTCCAC 59.726 52.381 0.00 0.00 30.78 4.02
322 323 1.001520 CCTACGTGATTGGTGTCCACA 59.998 52.381 0.00 0.00 30.78 4.17
323 324 2.066262 CTACGTGATTGGTGTCCACAC 58.934 52.381 0.00 0.85 45.72 3.82
324 325 0.468226 ACGTGATTGGTGTCCACACT 59.532 50.000 9.65 0.00 45.73 3.55
325 326 1.148310 CGTGATTGGTGTCCACACTC 58.852 55.000 9.65 0.85 45.73 3.51
326 327 1.523758 GTGATTGGTGTCCACACTCC 58.476 55.000 9.65 0.00 45.73 3.85
327 328 1.072331 GTGATTGGTGTCCACACTCCT 59.928 52.381 9.65 0.00 45.73 3.69
328 329 1.072173 TGATTGGTGTCCACACTCCTG 59.928 52.381 9.65 0.00 45.73 3.86
329 330 0.250901 ATTGGTGTCCACACTCCTGC 60.251 55.000 9.65 0.00 45.73 4.85
330 331 1.631071 TTGGTGTCCACACTCCTGCA 61.631 55.000 9.65 0.00 45.73 4.41
331 332 1.148273 GGTGTCCACACTCCTGCAA 59.852 57.895 9.65 0.00 45.73 4.08
332 333 0.465460 GGTGTCCACACTCCTGCAAA 60.465 55.000 9.65 0.00 45.73 3.68
333 334 0.947244 GTGTCCACACTCCTGCAAAG 59.053 55.000 2.41 0.00 43.25 2.77
334 335 0.819259 TGTCCACACTCCTGCAAAGC 60.819 55.000 0.00 0.00 0.00 3.51
335 336 1.228245 TCCACACTCCTGCAAAGCC 60.228 57.895 0.00 0.00 0.00 4.35
336 337 2.270986 CCACACTCCTGCAAAGCCC 61.271 63.158 0.00 0.00 0.00 5.19
337 338 2.116125 ACACTCCTGCAAAGCCCC 59.884 61.111 0.00 0.00 0.00 5.80
338 339 2.437897 CACTCCTGCAAAGCCCCT 59.562 61.111 0.00 0.00 0.00 4.79
339 340 1.676967 CACTCCTGCAAAGCCCCTC 60.677 63.158 0.00 0.00 0.00 4.30
340 341 2.044551 CTCCTGCAAAGCCCCTCC 60.045 66.667 0.00 0.00 0.00 4.30
341 342 3.651980 CTCCTGCAAAGCCCCTCCC 62.652 68.421 0.00 0.00 0.00 4.30
342 343 4.766632 CCTGCAAAGCCCCTCCCC 62.767 72.222 0.00 0.00 0.00 4.81
343 344 4.766632 CTGCAAAGCCCCTCCCCC 62.767 72.222 0.00 0.00 0.00 5.40
345 346 3.997952 GCAAAGCCCCTCCCCCTT 61.998 66.667 0.00 0.00 0.00 3.95
346 347 2.360585 CAAAGCCCCTCCCCCTTC 59.639 66.667 0.00 0.00 0.00 3.46
347 348 2.947217 AAAGCCCCTCCCCCTTCC 60.947 66.667 0.00 0.00 0.00 3.46
353 354 4.416601 CCTCCCCCTTCCCCGAGT 62.417 72.222 0.00 0.00 0.00 4.18
354 355 2.285442 CTCCCCCTTCCCCGAGTT 60.285 66.667 0.00 0.00 0.00 3.01
355 356 1.923909 CTCCCCCTTCCCCGAGTTT 60.924 63.158 0.00 0.00 0.00 2.66
356 357 2.198304 CTCCCCCTTCCCCGAGTTTG 62.198 65.000 0.00 0.00 0.00 2.93
357 358 2.361230 CCCCTTCCCCGAGTTTGC 60.361 66.667 0.00 0.00 0.00 3.68
358 359 2.361230 CCCTTCCCCGAGTTTGCC 60.361 66.667 0.00 0.00 0.00 4.52
359 360 2.757077 CCTTCCCCGAGTTTGCCT 59.243 61.111 0.00 0.00 0.00 4.75
360 361 1.074951 CCTTCCCCGAGTTTGCCTT 59.925 57.895 0.00 0.00 0.00 4.35
361 362 0.960861 CCTTCCCCGAGTTTGCCTTC 60.961 60.000 0.00 0.00 0.00 3.46
362 363 0.036875 CTTCCCCGAGTTTGCCTTCT 59.963 55.000 0.00 0.00 0.00 2.85
363 364 0.250727 TTCCCCGAGTTTGCCTTCTG 60.251 55.000 0.00 0.00 0.00 3.02
364 365 1.675641 CCCCGAGTTTGCCTTCTGG 60.676 63.158 0.00 0.00 0.00 3.86
365 366 1.073199 CCCGAGTTTGCCTTCTGGT 59.927 57.895 0.00 0.00 35.27 4.00
366 367 0.537371 CCCGAGTTTGCCTTCTGGTT 60.537 55.000 0.00 0.00 35.27 3.67
367 368 0.593128 CCGAGTTTGCCTTCTGGTTG 59.407 55.000 0.00 0.00 35.27 3.77
368 369 0.040067 CGAGTTTGCCTTCTGGTTGC 60.040 55.000 0.00 0.00 35.27 4.17
369 370 1.322442 GAGTTTGCCTTCTGGTTGCT 58.678 50.000 0.00 0.00 35.27 3.91
370 371 1.000938 GAGTTTGCCTTCTGGTTGCTG 60.001 52.381 0.00 0.00 35.27 4.41
371 372 1.032014 GTTTGCCTTCTGGTTGCTGA 58.968 50.000 0.00 0.00 35.27 4.26
372 373 1.408702 GTTTGCCTTCTGGTTGCTGAA 59.591 47.619 0.00 0.00 35.27 3.02
373 374 1.774110 TTGCCTTCTGGTTGCTGAAA 58.226 45.000 0.00 0.00 35.27 2.69
374 375 1.774110 TGCCTTCTGGTTGCTGAAAA 58.226 45.000 0.00 0.00 35.27 2.29
375 376 2.106566 TGCCTTCTGGTTGCTGAAAAA 58.893 42.857 0.00 0.00 35.27 1.94
392 393 3.427670 AAAAAGCGTGTGGACCGG 58.572 55.556 0.00 0.00 0.00 5.28
393 394 2.841160 AAAAAGCGTGTGGACCGGC 61.841 57.895 0.00 0.00 0.00 6.13
402 403 3.565214 TGGACCGGCCAGCAGAAA 61.565 61.111 12.86 0.00 43.33 2.52
403 404 3.056328 GGACCGGCCAGCAGAAAC 61.056 66.667 0.00 0.00 36.34 2.78
404 405 2.281484 GACCGGCCAGCAGAAACA 60.281 61.111 0.00 0.00 0.00 2.83
405 406 1.675641 GACCGGCCAGCAGAAACAT 60.676 57.895 0.00 0.00 0.00 2.71
406 407 1.926511 GACCGGCCAGCAGAAACATG 61.927 60.000 0.00 0.00 0.00 3.21
407 408 1.675310 CCGGCCAGCAGAAACATGA 60.675 57.895 2.24 0.00 0.00 3.07
408 409 1.503542 CGGCCAGCAGAAACATGAC 59.496 57.895 2.24 0.00 0.00 3.06
409 410 1.885871 GGCCAGCAGAAACATGACC 59.114 57.895 0.00 0.00 0.00 4.02
410 411 0.895100 GGCCAGCAGAAACATGACCA 60.895 55.000 0.00 0.00 0.00 4.02
411 412 0.242017 GCCAGCAGAAACATGACCAC 59.758 55.000 0.00 0.00 0.00 4.16
412 413 1.608055 CCAGCAGAAACATGACCACA 58.392 50.000 0.00 0.00 0.00 4.17
413 414 2.165167 CCAGCAGAAACATGACCACAT 58.835 47.619 0.00 0.00 37.19 3.21
414 415 2.559668 CCAGCAGAAACATGACCACATT 59.440 45.455 0.00 0.00 34.15 2.71
415 416 3.571571 CAGCAGAAACATGACCACATTG 58.428 45.455 0.00 0.00 34.15 2.82
416 417 2.559668 AGCAGAAACATGACCACATTGG 59.440 45.455 0.00 0.00 45.02 3.16
417 418 2.557924 GCAGAAACATGACCACATTGGA 59.442 45.455 0.00 0.00 40.96 3.53
418 419 3.194116 GCAGAAACATGACCACATTGGAT 59.806 43.478 0.00 0.00 40.96 3.41
419 420 4.740268 CAGAAACATGACCACATTGGATG 58.260 43.478 0.00 0.00 40.96 3.51
420 421 4.460034 CAGAAACATGACCACATTGGATGA 59.540 41.667 0.00 0.00 40.96 2.92
421 422 4.460382 AGAAACATGACCACATTGGATGAC 59.540 41.667 0.00 0.00 40.96 3.06
422 423 3.438216 ACATGACCACATTGGATGACA 57.562 42.857 0.00 0.00 40.96 3.58
423 424 3.765381 ACATGACCACATTGGATGACAA 58.235 40.909 0.00 0.00 40.96 3.18
424 425 4.151121 ACATGACCACATTGGATGACAAA 58.849 39.130 0.00 0.00 43.46 2.83
425 426 4.588106 ACATGACCACATTGGATGACAAAA 59.412 37.500 0.00 0.00 43.46 2.44
426 427 4.582701 TGACCACATTGGATGACAAAAC 57.417 40.909 0.00 0.00 43.46 2.43
427 428 3.956848 TGACCACATTGGATGACAAAACA 59.043 39.130 0.00 0.00 43.46 2.83
428 429 4.588106 TGACCACATTGGATGACAAAACAT 59.412 37.500 0.00 0.00 43.46 2.71
429 430 5.772169 TGACCACATTGGATGACAAAACATA 59.228 36.000 0.00 0.00 43.46 2.29
430 431 6.436847 TGACCACATTGGATGACAAAACATAT 59.563 34.615 0.00 0.00 43.46 1.78
431 432 6.866480 ACCACATTGGATGACAAAACATATC 58.134 36.000 0.00 0.00 43.46 1.63
432 433 6.127366 ACCACATTGGATGACAAAACATATCC 60.127 38.462 0.00 0.00 43.46 2.59
433 434 6.097270 CCACATTGGATGACAAAACATATCCT 59.903 38.462 0.00 0.00 43.46 3.24
434 435 7.285172 CCACATTGGATGACAAAACATATCCTA 59.715 37.037 0.00 0.00 43.46 2.94
435 436 8.685427 CACATTGGATGACAAAACATATCCTAA 58.315 33.333 0.00 0.00 43.46 2.69
436 437 8.686334 ACATTGGATGACAAAACATATCCTAAC 58.314 33.333 0.00 0.00 43.46 2.34
437 438 7.639113 TTGGATGACAAAACATATCCTAACC 57.361 36.000 0.00 0.00 39.80 2.85
438 439 6.726379 TGGATGACAAAACATATCCTAACCA 58.274 36.000 0.00 0.00 39.80 3.67
439 440 6.601613 TGGATGACAAAACATATCCTAACCAC 59.398 38.462 0.00 0.00 39.80 4.16
440 441 6.601613 GGATGACAAAACATATCCTAACCACA 59.398 38.462 0.00 0.00 36.88 4.17
441 442 6.811253 TGACAAAACATATCCTAACCACAC 57.189 37.500 0.00 0.00 0.00 3.82
442 443 5.410132 TGACAAAACATATCCTAACCACACG 59.590 40.000 0.00 0.00 0.00 4.49
443 444 4.698304 ACAAAACATATCCTAACCACACGG 59.302 41.667 0.00 0.00 38.77 4.94
452 453 3.816388 ACCACACGGTTCAAACGG 58.184 55.556 0.00 0.66 46.31 4.44
453 454 1.078285 ACCACACGGTTCAAACGGT 60.078 52.632 0.00 1.33 46.31 4.83
454 455 0.677414 ACCACACGGTTCAAACGGTT 60.677 50.000 0.00 0.00 46.31 4.44
455 456 0.248296 CCACACGGTTCAAACGGTTG 60.248 55.000 6.93 6.93 39.97 3.77
456 457 0.863957 CACACGGTTCAAACGGTTGC 60.864 55.000 8.75 0.00 39.97 4.17
457 458 1.652930 CACGGTTCAAACGGTTGCG 60.653 57.895 8.75 9.29 39.97 4.85
458 459 2.051703 CGGTTCAAACGGTTGCGG 60.052 61.111 8.75 0.00 34.50 5.69
459 460 2.333581 GGTTCAAACGGTTGCGGG 59.666 61.111 8.75 0.00 34.50 6.13
460 461 2.354188 GTTCAAACGGTTGCGGGC 60.354 61.111 8.75 0.00 34.50 6.13
461 462 3.955101 TTCAAACGGTTGCGGGCG 61.955 61.111 8.75 0.00 34.50 6.13
467 468 3.355455 CGGTTGCGGGCGGTTTTA 61.355 61.111 0.00 0.00 0.00 1.52
468 469 2.564458 GGTTGCGGGCGGTTTTAG 59.436 61.111 0.00 0.00 0.00 1.85
469 470 2.564458 GTTGCGGGCGGTTTTAGG 59.436 61.111 0.00 0.00 0.00 2.69
470 471 2.673687 TTGCGGGCGGTTTTAGGG 60.674 61.111 0.00 0.00 0.00 3.53
471 472 3.494736 TTGCGGGCGGTTTTAGGGT 62.495 57.895 0.00 0.00 0.00 4.34
472 473 3.129502 GCGGGCGGTTTTAGGGTC 61.130 66.667 0.00 0.00 0.00 4.46
473 474 2.437180 CGGGCGGTTTTAGGGTCC 60.437 66.667 0.00 0.00 0.00 4.46
474 475 2.437180 GGGCGGTTTTAGGGTCCG 60.437 66.667 0.00 0.00 45.94 4.79
475 476 2.437180 GGCGGTTTTAGGGTCCGG 60.437 66.667 0.00 0.00 43.77 5.14
480 481 0.401356 GGTTTTAGGGTCCGGGTTGA 59.599 55.000 0.00 0.00 0.00 3.18
486 487 0.546747 AGGGTCCGGGTTGAAGATGA 60.547 55.000 0.00 0.00 0.00 2.92
490 491 1.003233 GTCCGGGTTGAAGATGACCTT 59.997 52.381 0.00 0.00 37.93 3.50
509 512 8.713708 TGACCTTACCCTTGAATAAAAATGAA 57.286 30.769 0.00 0.00 0.00 2.57
544 575 1.960994 GCTCGCCGCAAAGAAGAGAC 61.961 60.000 0.00 0.00 38.92 3.36
551 582 1.373570 GCAAAGAAGAGACCCATCGG 58.626 55.000 0.00 0.00 0.00 4.18
557 588 2.202756 GAGACCCATCGGTGTCGC 60.203 66.667 0.00 0.00 44.88 5.19
581 613 1.862602 GAAAAATCACCACGGCCGCT 61.863 55.000 28.58 10.12 0.00 5.52
610 650 2.664851 GCGCGGCATATGCAGGTA 60.665 61.111 28.07 0.00 44.36 3.08
778 820 3.314080 TCACATGACGTTGTTTTCTTCCC 59.686 43.478 0.00 0.00 0.00 3.97
819 861 1.372997 CTTGCCAGACACGTACGCT 60.373 57.895 16.72 0.96 0.00 5.07
844 886 1.002366 CGGCTCCGAGAAAATGACTG 58.998 55.000 1.35 0.00 42.83 3.51
883 925 3.251245 TCATACAACAAAAACGTCGCCAT 59.749 39.130 0.00 0.00 0.00 4.40
1045 1104 0.880278 GGCGTGTGTCATGTCAGTGT 60.880 55.000 0.00 0.00 0.00 3.55
1138 1197 0.461961 GCTTGCCGAGGTAGATGTCT 59.538 55.000 0.00 0.00 0.00 3.41
1335 1394 4.415150 CAGCGGCACCACCTGGAT 62.415 66.667 0.00 0.00 38.94 3.41
1525 1590 2.804090 GACGCCGTCACCTCGAAC 60.804 66.667 13.23 0.00 32.09 3.95
1753 1818 0.835971 TGCTCAGGTCCTTGTGGCTA 60.836 55.000 0.00 0.00 0.00 3.93
1754 1819 0.107945 GCTCAGGTCCTTGTGGCTAG 60.108 60.000 0.00 0.00 0.00 3.42
2218 2283 0.884259 TGACGAACACCTCCGACGTA 60.884 55.000 0.00 0.00 37.32 3.57
2290 2355 0.941463 CGTTGAAGTCGCAGCTCACT 60.941 55.000 0.00 0.00 0.00 3.41
2293 2358 0.104855 TGAAGTCGCAGCTCACTTGT 59.895 50.000 10.59 0.00 32.83 3.16
2308 2373 0.107017 CTTGTGGCTCCGGGATGAAT 60.107 55.000 0.00 0.00 0.00 2.57
2338 2407 3.794717 TGCATTGCACAACACAGAAATT 58.205 36.364 7.38 0.00 31.71 1.82
2381 2453 0.888619 GCTTCTTTTCTTTCCCCGGG 59.111 55.000 15.80 15.80 0.00 5.73
2399 2471 2.607635 CGGGTGAACTAACCAATCATCG 59.392 50.000 0.00 0.00 42.47 3.84
2430 2502 5.867330 AGCAGAAGATTATTGAGAGGATGG 58.133 41.667 0.00 0.00 0.00 3.51
2431 2503 4.455190 GCAGAAGATTATTGAGAGGATGGC 59.545 45.833 0.00 0.00 0.00 4.40
2470 2545 0.543749 ATTGAAGAAGGCCCTCCTCG 59.456 55.000 0.00 0.00 43.40 4.63
2519 2594 0.604578 GGCTTGCCTGCAGATTGAAA 59.395 50.000 17.39 0.00 34.04 2.69
2548 2623 5.449588 CCTCAATGTCAAATCTCCATTTCCG 60.450 44.000 0.00 0.00 28.97 4.30
2574 2649 2.571212 AGAACCGATGAACAAGCAACA 58.429 42.857 0.00 0.00 0.00 3.33
2610 2687 4.458295 CAGCAACAGGATGAACATTTCTCT 59.542 41.667 0.00 0.00 39.69 3.10
2683 2765 2.852075 AAGAACTGGACGGCCCCA 60.852 61.111 3.83 0.00 34.52 4.96
2769 2851 1.367848 AGGGAGAGGGACCTTCATCTT 59.632 52.381 6.36 0.00 31.68 2.40
2773 2855 0.106967 GAGGGACCTTCATCTTGGCC 60.107 60.000 0.00 0.00 0.00 5.36
2795 2877 3.324993 CAACCTCAGAAAGCAGAGAGAC 58.675 50.000 0.00 0.00 33.74 3.36
2800 2882 0.980423 AGAAAGCAGAGAGACCCACC 59.020 55.000 0.00 0.00 0.00 4.61
2865 2947 0.238289 CGCAACGCATTCCTCAAGTT 59.762 50.000 0.00 0.00 0.00 2.66
2869 2951 1.538047 ACGCATTCCTCAAGTTGCAT 58.462 45.000 0.00 0.00 34.80 3.96
2878 2960 4.858850 TCCTCAAGTTGCATATCAATGGT 58.141 39.130 0.00 0.00 36.99 3.55
2881 2963 5.278169 CCTCAAGTTGCATATCAATGGTAGC 60.278 44.000 0.00 0.00 36.99 3.58
3083 3186 4.253257 GGTCGGTAGAGCGAGCCG 62.253 72.222 19.46 5.85 46.12 5.52
3084 3187 4.253257 GTCGGTAGAGCGAGCCGG 62.253 72.222 3.71 0.00 44.97 6.13
3128 3241 4.083862 GTTTCCTCGCGCCTCCCT 62.084 66.667 0.00 0.00 0.00 4.20
3129 3242 3.771160 TTTCCTCGCGCCTCCCTC 61.771 66.667 0.00 0.00 0.00 4.30
3275 3396 2.312398 CTTCTCCTCCTCGTCGTCGC 62.312 65.000 0.00 0.00 36.96 5.19
3302 3429 1.156645 GCGATCGAGCTGCAAATCCT 61.157 55.000 21.57 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.679680 CGATCAAATGCCATTGAGCCT 59.320 47.619 10.17 0.00 41.46 4.58
1 2 1.677576 TCGATCAAATGCCATTGAGCC 59.322 47.619 10.17 3.63 41.46 4.70
2 3 3.111098 GTTCGATCAAATGCCATTGAGC 58.889 45.455 6.73 6.73 42.21 4.26
3 4 4.359971 TGTTCGATCAAATGCCATTGAG 57.640 40.909 7.27 0.00 42.21 3.02
4 5 4.641541 AGATGTTCGATCAAATGCCATTGA 59.358 37.500 0.00 4.02 43.03 2.57
6 7 4.735578 GCAGATGTTCGATCAAATGCCATT 60.736 41.667 18.49 0.00 31.33 3.16
7 8 3.243301 GCAGATGTTCGATCAAATGCCAT 60.243 43.478 18.49 0.00 31.33 4.40
9 10 2.542411 GGCAGATGTTCGATCAAATGCC 60.542 50.000 26.46 26.46 41.84 4.40
10 11 2.724349 GGCAGATGTTCGATCAAATGC 58.276 47.619 19.99 19.99 34.41 3.56
11 12 2.609002 TCGGCAGATGTTCGATCAAATG 59.391 45.455 0.00 3.95 0.00 2.32
12 13 2.868583 CTCGGCAGATGTTCGATCAAAT 59.131 45.455 0.00 0.00 32.32 2.32
13 14 2.270923 CTCGGCAGATGTTCGATCAAA 58.729 47.619 0.00 0.00 32.32 2.69
14 15 1.204704 ACTCGGCAGATGTTCGATCAA 59.795 47.619 0.00 0.00 32.32 2.57
15 16 0.817654 ACTCGGCAGATGTTCGATCA 59.182 50.000 0.00 0.00 32.32 2.92
16 17 1.203928 CACTCGGCAGATGTTCGATC 58.796 55.000 0.00 0.00 32.32 3.69
17 18 0.807667 GCACTCGGCAGATGTTCGAT 60.808 55.000 0.00 0.00 43.97 3.59
18 19 1.446099 GCACTCGGCAGATGTTCGA 60.446 57.895 0.00 0.00 43.97 3.71
19 20 2.792290 CGCACTCGGCAGATGTTCG 61.792 63.158 0.00 0.00 45.17 3.95
20 21 3.084579 CGCACTCGGCAGATGTTC 58.915 61.111 0.00 0.00 45.17 3.18
44 45 1.148157 CTGTCGATGCCGTCCATGAC 61.148 60.000 0.00 0.00 33.29 3.06
45 46 1.141665 CTGTCGATGCCGTCCATGA 59.858 57.895 0.00 0.00 33.29 3.07
46 47 1.884464 CCTGTCGATGCCGTCCATG 60.884 63.158 0.00 0.00 33.29 3.66
47 48 2.501128 CCTGTCGATGCCGTCCAT 59.499 61.111 0.00 0.00 36.70 3.41
48 49 3.770040 CCCTGTCGATGCCGTCCA 61.770 66.667 0.00 0.00 37.05 4.02
49 50 4.530857 CCCCTGTCGATGCCGTCC 62.531 72.222 0.00 0.00 37.05 4.79
50 51 3.771160 ACCCCTGTCGATGCCGTC 61.771 66.667 0.00 0.00 37.05 4.79
51 52 4.082523 CACCCCTGTCGATGCCGT 62.083 66.667 0.00 0.00 37.05 5.68
52 53 4.082523 ACACCCCTGTCGATGCCG 62.083 66.667 0.00 0.00 37.07 5.69
53 54 2.436646 CACACCCCTGTCGATGCC 60.437 66.667 0.00 0.00 0.00 4.40
54 55 2.436646 CCACACCCCTGTCGATGC 60.437 66.667 0.00 0.00 0.00 3.91
55 56 1.219124 CTCCACACCCCTGTCGATG 59.781 63.158 0.00 0.00 0.00 3.84
56 57 1.990060 CCTCCACACCCCTGTCGAT 60.990 63.158 0.00 0.00 0.00 3.59
57 58 2.603473 CCTCCACACCCCTGTCGA 60.603 66.667 0.00 0.00 0.00 4.20
58 59 3.706373 CCCTCCACACCCCTGTCG 61.706 72.222 0.00 0.00 0.00 4.35
59 60 2.529389 ACCCTCCACACCCCTGTC 60.529 66.667 0.00 0.00 0.00 3.51
60 61 2.529389 GACCCTCCACACCCCTGT 60.529 66.667 0.00 0.00 0.00 4.00
61 62 2.203998 AGACCCTCCACACCCCTG 60.204 66.667 0.00 0.00 0.00 4.45
62 63 2.122954 GAGACCCTCCACACCCCT 59.877 66.667 0.00 0.00 0.00 4.79
63 64 2.122954 AGAGACCCTCCACACCCC 59.877 66.667 0.00 0.00 0.00 4.95
64 65 1.229209 TCAGAGACCCTCCACACCC 60.229 63.158 0.00 0.00 0.00 4.61
65 66 0.543174 AGTCAGAGACCCTCCACACC 60.543 60.000 0.00 0.00 32.18 4.16
66 67 0.605589 CAGTCAGAGACCCTCCACAC 59.394 60.000 0.00 0.00 32.18 3.82
67 68 1.188219 GCAGTCAGAGACCCTCCACA 61.188 60.000 0.00 0.00 32.18 4.17
68 69 1.594310 GCAGTCAGAGACCCTCCAC 59.406 63.158 0.00 0.00 32.18 4.02
69 70 1.979155 CGCAGTCAGAGACCCTCCA 60.979 63.158 0.00 0.00 32.18 3.86
70 71 2.716017 CCGCAGTCAGAGACCCTCC 61.716 68.421 0.00 0.00 32.18 4.30
71 72 1.662438 CTCCGCAGTCAGAGACCCTC 61.662 65.000 0.00 0.00 32.18 4.30
72 73 1.680651 CTCCGCAGTCAGAGACCCT 60.681 63.158 0.00 0.00 32.18 4.34
73 74 2.716017 CCTCCGCAGTCAGAGACCC 61.716 68.421 0.00 0.00 32.18 4.46
74 75 2.716017 CCCTCCGCAGTCAGAGACC 61.716 68.421 0.00 0.00 32.18 3.85
75 76 1.679305 TCCCTCCGCAGTCAGAGAC 60.679 63.158 0.00 0.00 31.43 3.36
76 77 1.679305 GTCCCTCCGCAGTCAGAGA 60.679 63.158 0.00 0.00 31.43 3.10
77 78 1.662438 GAGTCCCTCCGCAGTCAGAG 61.662 65.000 0.00 0.00 0.00 3.35
78 79 1.679305 GAGTCCCTCCGCAGTCAGA 60.679 63.158 0.00 0.00 0.00 3.27
79 80 2.716017 GGAGTCCCTCCGCAGTCAG 61.716 68.421 0.00 0.00 41.08 3.51
80 81 2.680352 GGAGTCCCTCCGCAGTCA 60.680 66.667 0.00 0.00 41.08 3.41
88 89 2.176247 TATTCACCCAGGAGTCCCTC 57.824 55.000 5.25 0.00 42.02 4.30
89 90 2.482494 CTTATTCACCCAGGAGTCCCT 58.518 52.381 5.25 0.00 45.74 4.20
90 91 1.490910 CCTTATTCACCCAGGAGTCCC 59.509 57.143 5.25 0.00 0.00 4.46
91 92 1.490910 CCCTTATTCACCCAGGAGTCC 59.509 57.143 0.00 0.00 0.00 3.85
92 93 2.170817 GACCCTTATTCACCCAGGAGTC 59.829 54.545 0.00 0.00 0.00 3.36
93 94 2.197465 GACCCTTATTCACCCAGGAGT 58.803 52.381 0.00 0.00 0.00 3.85
94 95 1.139058 CGACCCTTATTCACCCAGGAG 59.861 57.143 0.00 0.00 0.00 3.69
95 96 1.200519 CGACCCTTATTCACCCAGGA 58.799 55.000 0.00 0.00 0.00 3.86
96 97 0.463833 GCGACCCTTATTCACCCAGG 60.464 60.000 0.00 0.00 0.00 4.45
97 98 0.251916 TGCGACCCTTATTCACCCAG 59.748 55.000 0.00 0.00 0.00 4.45
98 99 0.693622 TTGCGACCCTTATTCACCCA 59.306 50.000 0.00 0.00 0.00 4.51
99 100 1.379527 CTTGCGACCCTTATTCACCC 58.620 55.000 0.00 0.00 0.00 4.61
100 101 1.379527 CCTTGCGACCCTTATTCACC 58.620 55.000 0.00 0.00 0.00 4.02
101 102 0.733150 GCCTTGCGACCCTTATTCAC 59.267 55.000 0.00 0.00 0.00 3.18
102 103 3.168773 GCCTTGCGACCCTTATTCA 57.831 52.632 0.00 0.00 0.00 2.57
114 115 2.399356 GCCTTGGACTACGCCTTGC 61.399 63.158 0.00 0.00 0.00 4.01
115 116 2.100631 CGCCTTGGACTACGCCTTG 61.101 63.158 0.00 0.00 0.00 3.61
116 117 2.264794 CGCCTTGGACTACGCCTT 59.735 61.111 0.00 0.00 0.00 4.35
117 118 3.771160 CCGCCTTGGACTACGCCT 61.771 66.667 0.00 0.00 42.00 5.52
118 119 4.832608 CCCGCCTTGGACTACGCC 62.833 72.222 0.00 0.00 42.00 5.68
120 121 4.077184 TGCCCGCCTTGGACTACG 62.077 66.667 0.00 0.00 42.00 3.51
121 122 2.125106 CTGCCCGCCTTGGACTAC 60.125 66.667 0.00 0.00 42.00 2.73
122 123 2.606519 ACTGCCCGCCTTGGACTA 60.607 61.111 0.00 0.00 42.00 2.59
123 124 4.021925 GACTGCCCGCCTTGGACT 62.022 66.667 0.00 0.00 42.00 3.85
143 144 3.384532 TTCGTAGACCCCGCCCAC 61.385 66.667 0.00 0.00 34.32 4.61
144 145 3.384532 GTTCGTAGACCCCGCCCA 61.385 66.667 0.00 0.00 34.32 5.36
145 146 4.503314 CGTTCGTAGACCCCGCCC 62.503 72.222 0.00 0.00 34.32 6.13
146 147 3.286915 AACGTTCGTAGACCCCGCC 62.287 63.158 0.00 0.00 34.32 6.13
147 148 1.803117 GAACGTTCGTAGACCCCGC 60.803 63.158 13.36 0.00 34.32 6.13
148 149 1.512734 CGAACGTTCGTAGACCCCG 60.513 63.158 35.92 13.48 45.09 5.73
149 150 4.465413 CGAACGTTCGTAGACCCC 57.535 61.111 35.92 5.20 45.09 4.95
158 159 1.067071 ACCAGGAATCCTCGAACGTTC 60.067 52.381 18.47 18.47 0.00 3.95
159 160 0.974383 ACCAGGAATCCTCGAACGTT 59.026 50.000 0.00 0.00 0.00 3.99
160 161 0.246635 CACCAGGAATCCTCGAACGT 59.753 55.000 0.00 0.00 0.00 3.99
161 162 0.460284 CCACCAGGAATCCTCGAACG 60.460 60.000 0.00 0.00 36.89 3.95
162 163 0.744771 GCCACCAGGAATCCTCGAAC 60.745 60.000 0.00 0.00 36.89 3.95
163 164 1.602237 GCCACCAGGAATCCTCGAA 59.398 57.895 0.00 0.00 36.89 3.71
164 165 2.721167 CGCCACCAGGAATCCTCGA 61.721 63.158 0.00 0.00 36.89 4.04
165 166 2.202932 CGCCACCAGGAATCCTCG 60.203 66.667 0.00 0.00 36.89 4.63
166 167 1.153349 GACGCCACCAGGAATCCTC 60.153 63.158 0.00 0.00 36.89 3.71
167 168 2.670148 GGACGCCACCAGGAATCCT 61.670 63.158 0.00 0.00 37.44 3.24
168 169 2.124695 GGACGCCACCAGGAATCC 60.125 66.667 0.00 0.00 36.89 3.01
169 170 2.511600 CGGACGCCACCAGGAATC 60.512 66.667 0.00 0.00 36.89 2.52
170 171 2.521958 CTTCGGACGCCACCAGGAAT 62.522 60.000 0.00 0.00 36.89 3.01
171 172 3.234630 CTTCGGACGCCACCAGGAA 62.235 63.158 0.00 0.00 36.89 3.36
172 173 3.691342 CTTCGGACGCCACCAGGA 61.691 66.667 0.00 0.00 36.89 3.86
173 174 3.649277 CTCTTCGGACGCCACCAGG 62.649 68.421 0.00 0.00 38.23 4.45
174 175 2.125912 CTCTTCGGACGCCACCAG 60.126 66.667 0.00 0.00 0.00 4.00
175 176 3.691342 CCTCTTCGGACGCCACCA 61.691 66.667 0.00 0.00 33.16 4.17
176 177 2.345760 TACCTCTTCGGACGCCACC 61.346 63.158 0.00 0.00 36.31 4.61
177 178 1.153881 GTACCTCTTCGGACGCCAC 60.154 63.158 0.00 0.00 36.31 5.01
178 179 1.180456 TTGTACCTCTTCGGACGCCA 61.180 55.000 0.00 0.00 36.31 5.69
179 180 0.735287 GTTGTACCTCTTCGGACGCC 60.735 60.000 0.00 0.00 36.31 5.68
180 181 1.069378 CGTTGTACCTCTTCGGACGC 61.069 60.000 0.00 0.00 36.31 5.19
181 182 0.518636 TCGTTGTACCTCTTCGGACG 59.481 55.000 0.00 0.00 36.31 4.79
182 183 2.163010 TCATCGTTGTACCTCTTCGGAC 59.837 50.000 0.00 0.00 36.31 4.79
183 184 2.163010 GTCATCGTTGTACCTCTTCGGA 59.837 50.000 0.00 0.00 36.31 4.55
184 185 2.527100 GTCATCGTTGTACCTCTTCGG 58.473 52.381 0.00 0.00 39.35 4.30
185 186 2.174764 CGTCATCGTTGTACCTCTTCG 58.825 52.381 0.00 0.00 0.00 3.79
198 199 3.541831 CGCCGGTTCACGTCATCG 61.542 66.667 1.90 0.00 42.24 3.84
199 200 2.126228 TCGCCGGTTCACGTCATC 60.126 61.111 1.90 0.00 42.24 2.92
200 201 2.126071 CTCGCCGGTTCACGTCAT 60.126 61.111 1.90 0.00 42.24 3.06
201 202 4.351938 CCTCGCCGGTTCACGTCA 62.352 66.667 1.90 0.00 42.24 4.35
212 213 2.819984 TTTCATCTGCACCCCTCGCC 62.820 60.000 0.00 0.00 0.00 5.54
213 214 1.372087 CTTTCATCTGCACCCCTCGC 61.372 60.000 0.00 0.00 0.00 5.03
214 215 0.745845 CCTTTCATCTGCACCCCTCG 60.746 60.000 0.00 0.00 0.00 4.63
215 216 0.620556 TCCTTTCATCTGCACCCCTC 59.379 55.000 0.00 0.00 0.00 4.30
216 217 1.005215 CTTCCTTTCATCTGCACCCCT 59.995 52.381 0.00 0.00 0.00 4.79
217 218 1.467920 CTTCCTTTCATCTGCACCCC 58.532 55.000 0.00 0.00 0.00 4.95
218 219 1.467920 CCTTCCTTTCATCTGCACCC 58.532 55.000 0.00 0.00 0.00 4.61
219 220 1.004745 TCCCTTCCTTTCATCTGCACC 59.995 52.381 0.00 0.00 0.00 5.01
220 221 2.363683 CTCCCTTCCTTTCATCTGCAC 58.636 52.381 0.00 0.00 0.00 4.57
221 222 1.283029 CCTCCCTTCCTTTCATCTGCA 59.717 52.381 0.00 0.00 0.00 4.41
222 223 1.561542 TCCTCCCTTCCTTTCATCTGC 59.438 52.381 0.00 0.00 0.00 4.26
223 224 2.421248 GCTCCTCCCTTCCTTTCATCTG 60.421 54.545 0.00 0.00 0.00 2.90
224 225 1.843206 GCTCCTCCCTTCCTTTCATCT 59.157 52.381 0.00 0.00 0.00 2.90
225 226 1.561542 TGCTCCTCCCTTCCTTTCATC 59.438 52.381 0.00 0.00 0.00 2.92
226 227 1.673767 TGCTCCTCCCTTCCTTTCAT 58.326 50.000 0.00 0.00 0.00 2.57
227 228 1.283029 CATGCTCCTCCCTTCCTTTCA 59.717 52.381 0.00 0.00 0.00 2.69
228 229 1.409381 CCATGCTCCTCCCTTCCTTTC 60.409 57.143 0.00 0.00 0.00 2.62
229 230 0.627986 CCATGCTCCTCCCTTCCTTT 59.372 55.000 0.00 0.00 0.00 3.11
230 231 1.284841 CCCATGCTCCTCCCTTCCTT 61.285 60.000 0.00 0.00 0.00 3.36
231 232 1.695597 CCCATGCTCCTCCCTTCCT 60.696 63.158 0.00 0.00 0.00 3.36
232 233 2.003548 ACCCATGCTCCTCCCTTCC 61.004 63.158 0.00 0.00 0.00 3.46
233 234 1.225704 CACCCATGCTCCTCCCTTC 59.774 63.158 0.00 0.00 0.00 3.46
234 235 2.311854 CCACCCATGCTCCTCCCTT 61.312 63.158 0.00 0.00 0.00 3.95
235 236 2.693864 CCACCCATGCTCCTCCCT 60.694 66.667 0.00 0.00 0.00 4.20
236 237 2.692368 TCCACCCATGCTCCTCCC 60.692 66.667 0.00 0.00 0.00 4.30
237 238 1.997874 ACTCCACCCATGCTCCTCC 60.998 63.158 0.00 0.00 0.00 4.30
238 239 1.222936 CACTCCACCCATGCTCCTC 59.777 63.158 0.00 0.00 0.00 3.71
239 240 2.304056 CCACTCCACCCATGCTCCT 61.304 63.158 0.00 0.00 0.00 3.69
240 241 1.852157 TTCCACTCCACCCATGCTCC 61.852 60.000 0.00 0.00 0.00 4.70
241 242 0.393537 CTTCCACTCCACCCATGCTC 60.394 60.000 0.00 0.00 0.00 4.26
242 243 0.842030 TCTTCCACTCCACCCATGCT 60.842 55.000 0.00 0.00 0.00 3.79
243 244 0.038166 TTCTTCCACTCCACCCATGC 59.962 55.000 0.00 0.00 0.00 4.06
244 245 2.584835 TTTCTTCCACTCCACCCATG 57.415 50.000 0.00 0.00 0.00 3.66
245 246 2.716424 TCTTTTCTTCCACTCCACCCAT 59.284 45.455 0.00 0.00 0.00 4.00
246 247 2.131854 TCTTTTCTTCCACTCCACCCA 58.868 47.619 0.00 0.00 0.00 4.51
247 248 2.951229 TCTTTTCTTCCACTCCACCC 57.049 50.000 0.00 0.00 0.00 4.61
248 249 3.815962 GTCTTCTTTTCTTCCACTCCACC 59.184 47.826 0.00 0.00 0.00 4.61
249 250 3.815962 GGTCTTCTTTTCTTCCACTCCAC 59.184 47.826 0.00 0.00 0.00 4.02
250 251 3.494398 CGGTCTTCTTTTCTTCCACTCCA 60.494 47.826 0.00 0.00 0.00 3.86
251 252 3.067833 CGGTCTTCTTTTCTTCCACTCC 58.932 50.000 0.00 0.00 0.00 3.85
252 253 3.067833 CCGGTCTTCTTTTCTTCCACTC 58.932 50.000 0.00 0.00 0.00 3.51
253 254 2.704065 TCCGGTCTTCTTTTCTTCCACT 59.296 45.455 0.00 0.00 0.00 4.00
254 255 3.121738 TCCGGTCTTCTTTTCTTCCAC 57.878 47.619 0.00 0.00 0.00 4.02
255 256 3.496160 CCTTCCGGTCTTCTTTTCTTCCA 60.496 47.826 0.00 0.00 0.00 3.53
256 257 3.075148 CCTTCCGGTCTTCTTTTCTTCC 58.925 50.000 0.00 0.00 0.00 3.46
257 258 3.075148 CCCTTCCGGTCTTCTTTTCTTC 58.925 50.000 0.00 0.00 0.00 2.87
258 259 2.224793 CCCCTTCCGGTCTTCTTTTCTT 60.225 50.000 0.00 0.00 0.00 2.52
259 260 1.351350 CCCCTTCCGGTCTTCTTTTCT 59.649 52.381 0.00 0.00 0.00 2.52
260 261 1.613520 CCCCCTTCCGGTCTTCTTTTC 60.614 57.143 0.00 0.00 0.00 2.29
261 262 0.404426 CCCCCTTCCGGTCTTCTTTT 59.596 55.000 0.00 0.00 0.00 2.27
262 263 0.475048 TCCCCCTTCCGGTCTTCTTT 60.475 55.000 0.00 0.00 0.00 2.52
263 264 0.253207 ATCCCCCTTCCGGTCTTCTT 60.253 55.000 0.00 0.00 0.00 2.52
264 265 0.253207 AATCCCCCTTCCGGTCTTCT 60.253 55.000 0.00 0.00 0.00 2.85
265 266 0.624254 AAATCCCCCTTCCGGTCTTC 59.376 55.000 0.00 0.00 0.00 2.87
266 267 0.624254 GAAATCCCCCTTCCGGTCTT 59.376 55.000 0.00 0.00 0.00 3.01
267 268 0.549169 TGAAATCCCCCTTCCGGTCT 60.549 55.000 0.00 0.00 0.00 3.85
268 269 0.107165 CTGAAATCCCCCTTCCGGTC 60.107 60.000 0.00 0.00 0.00 4.79
269 270 0.845102 ACTGAAATCCCCCTTCCGGT 60.845 55.000 0.00 0.00 0.00 5.28
270 271 0.394352 CACTGAAATCCCCCTTCCGG 60.394 60.000 0.00 0.00 0.00 5.14
271 272 0.394352 CCACTGAAATCCCCCTTCCG 60.394 60.000 0.00 0.00 0.00 4.30
272 273 0.033109 CCCACTGAAATCCCCCTTCC 60.033 60.000 0.00 0.00 0.00 3.46
273 274 0.033109 CCCCACTGAAATCCCCCTTC 60.033 60.000 0.00 0.00 0.00 3.46
274 275 0.780090 ACCCCACTGAAATCCCCCTT 60.780 55.000 0.00 0.00 0.00 3.95
275 276 1.151361 ACCCCACTGAAATCCCCCT 60.151 57.895 0.00 0.00 0.00 4.79
276 277 1.000359 CACCCCACTGAAATCCCCC 60.000 63.158 0.00 0.00 0.00 5.40
277 278 0.323451 GACACCCCACTGAAATCCCC 60.323 60.000 0.00 0.00 0.00 4.81
278 279 0.676782 CGACACCCCACTGAAATCCC 60.677 60.000 0.00 0.00 0.00 3.85
279 280 0.676782 CCGACACCCCACTGAAATCC 60.677 60.000 0.00 0.00 0.00 3.01
280 281 0.323629 TCCGACACCCCACTGAAATC 59.676 55.000 0.00 0.00 0.00 2.17
281 282 0.324943 CTCCGACACCCCACTGAAAT 59.675 55.000 0.00 0.00 0.00 2.17
282 283 1.052124 ACTCCGACACCCCACTGAAA 61.052 55.000 0.00 0.00 0.00 2.69
283 284 1.458777 ACTCCGACACCCCACTGAA 60.459 57.895 0.00 0.00 0.00 3.02
284 285 1.906824 GACTCCGACACCCCACTGA 60.907 63.158 0.00 0.00 0.00 3.41
285 286 2.657237 GACTCCGACACCCCACTG 59.343 66.667 0.00 0.00 0.00 3.66
286 287 1.797018 TAGGACTCCGACACCCCACT 61.797 60.000 0.00 0.00 0.00 4.00
287 288 1.304713 TAGGACTCCGACACCCCAC 60.305 63.158 0.00 0.00 0.00 4.61
288 289 1.304713 GTAGGACTCCGACACCCCA 60.305 63.158 3.55 0.00 0.00 4.96
289 290 2.413142 CGTAGGACTCCGACACCCC 61.413 68.421 8.84 0.00 0.00 4.95
290 291 1.676967 ACGTAGGACTCCGACACCC 60.677 63.158 8.84 0.00 0.00 4.61
291 292 0.957395 TCACGTAGGACTCCGACACC 60.957 60.000 8.84 0.00 0.00 4.16
292 293 1.093159 ATCACGTAGGACTCCGACAC 58.907 55.000 8.84 0.00 0.00 3.67
293 294 1.471287 CAATCACGTAGGACTCCGACA 59.529 52.381 8.84 0.00 0.00 4.35
294 295 1.202268 CCAATCACGTAGGACTCCGAC 60.202 57.143 0.00 0.00 0.00 4.79
295 296 1.100510 CCAATCACGTAGGACTCCGA 58.899 55.000 0.00 0.00 0.00 4.55
296 297 0.815734 ACCAATCACGTAGGACTCCG 59.184 55.000 0.00 0.00 0.00 4.63
297 298 1.549170 ACACCAATCACGTAGGACTCC 59.451 52.381 0.00 0.00 0.00 3.85
298 299 2.416972 GGACACCAATCACGTAGGACTC 60.417 54.545 0.00 0.00 0.00 3.36
299 300 1.549170 GGACACCAATCACGTAGGACT 59.451 52.381 0.00 0.00 0.00 3.85
300 301 1.274167 TGGACACCAATCACGTAGGAC 59.726 52.381 0.00 0.00 0.00 3.85
301 302 1.274167 GTGGACACCAATCACGTAGGA 59.726 52.381 0.00 0.00 34.18 2.94
302 303 1.001520 TGTGGACACCAATCACGTAGG 59.998 52.381 0.00 0.00 34.18 3.18
303 304 2.066262 GTGTGGACACCAATCACGTAG 58.934 52.381 0.00 0.00 40.85 3.51
304 305 2.157834 GTGTGGACACCAATCACGTA 57.842 50.000 0.00 0.00 40.85 3.57
305 306 3.000815 GTGTGGACACCAATCACGT 57.999 52.632 0.00 0.00 40.85 4.49
314 315 0.947244 CTTTGCAGGAGTGTGGACAC 59.053 55.000 1.42 1.42 46.77 3.67
315 316 0.819259 GCTTTGCAGGAGTGTGGACA 60.819 55.000 0.00 0.00 0.00 4.02
316 317 1.518903 GGCTTTGCAGGAGTGTGGAC 61.519 60.000 0.00 0.00 0.00 4.02
317 318 1.228245 GGCTTTGCAGGAGTGTGGA 60.228 57.895 0.00 0.00 0.00 4.02
318 319 2.270986 GGGCTTTGCAGGAGTGTGG 61.271 63.158 0.00 0.00 0.00 4.17
319 320 2.270986 GGGGCTTTGCAGGAGTGTG 61.271 63.158 0.00 0.00 0.00 3.82
320 321 2.116125 GGGGCTTTGCAGGAGTGT 59.884 61.111 0.00 0.00 0.00 3.55
321 322 1.676967 GAGGGGCTTTGCAGGAGTG 60.677 63.158 0.00 0.00 0.00 3.51
322 323 2.759795 GAGGGGCTTTGCAGGAGT 59.240 61.111 0.00 0.00 0.00 3.85
323 324 2.044551 GGAGGGGCTTTGCAGGAG 60.045 66.667 0.00 0.00 0.00 3.69
324 325 3.661648 GGGAGGGGCTTTGCAGGA 61.662 66.667 0.00 0.00 0.00 3.86
325 326 4.766632 GGGGAGGGGCTTTGCAGG 62.767 72.222 0.00 0.00 0.00 4.85
326 327 4.766632 GGGGGAGGGGCTTTGCAG 62.767 72.222 0.00 0.00 0.00 4.41
328 329 3.965026 GAAGGGGGAGGGGCTTTGC 62.965 68.421 0.00 0.00 0.00 3.68
329 330 2.360585 GAAGGGGGAGGGGCTTTG 59.639 66.667 0.00 0.00 0.00 2.77
330 331 2.947217 GGAAGGGGGAGGGGCTTT 60.947 66.667 0.00 0.00 0.00 3.51
336 337 3.945064 AACTCGGGGAAGGGGGAGG 62.945 68.421 0.00 0.00 0.00 4.30
337 338 1.923909 AAACTCGGGGAAGGGGGAG 60.924 63.158 0.00 0.00 0.00 4.30
338 339 2.208932 AAACTCGGGGAAGGGGGA 59.791 61.111 0.00 0.00 0.00 4.81
339 340 2.355115 CAAACTCGGGGAAGGGGG 59.645 66.667 0.00 0.00 0.00 5.40
340 341 2.361230 GCAAACTCGGGGAAGGGG 60.361 66.667 0.00 0.00 0.00 4.79
341 342 2.361230 GGCAAACTCGGGGAAGGG 60.361 66.667 0.00 0.00 0.00 3.95
342 343 0.960861 GAAGGCAAACTCGGGGAAGG 60.961 60.000 0.00 0.00 0.00 3.46
343 344 0.036875 AGAAGGCAAACTCGGGGAAG 59.963 55.000 0.00 0.00 0.00 3.46
344 345 0.250727 CAGAAGGCAAACTCGGGGAA 60.251 55.000 0.00 0.00 0.00 3.97
345 346 1.374947 CAGAAGGCAAACTCGGGGA 59.625 57.895 0.00 0.00 0.00 4.81
346 347 1.675641 CCAGAAGGCAAACTCGGGG 60.676 63.158 0.00 0.00 0.00 5.73
347 348 0.537371 AACCAGAAGGCAAACTCGGG 60.537 55.000 0.00 0.00 39.06 5.14
348 349 0.593128 CAACCAGAAGGCAAACTCGG 59.407 55.000 0.00 0.00 39.06 4.63
349 350 0.040067 GCAACCAGAAGGCAAACTCG 60.040 55.000 0.00 0.00 39.06 4.18
350 351 1.000938 CAGCAACCAGAAGGCAAACTC 60.001 52.381 0.00 0.00 39.06 3.01
351 352 1.035139 CAGCAACCAGAAGGCAAACT 58.965 50.000 0.00 0.00 39.06 2.66
352 353 1.032014 TCAGCAACCAGAAGGCAAAC 58.968 50.000 0.00 0.00 39.06 2.93
353 354 1.774110 TTCAGCAACCAGAAGGCAAA 58.226 45.000 0.00 0.00 39.06 3.68
354 355 1.774110 TTTCAGCAACCAGAAGGCAA 58.226 45.000 0.00 0.00 39.06 4.52
355 356 1.774110 TTTTCAGCAACCAGAAGGCA 58.226 45.000 0.00 0.00 39.06 4.75
356 357 2.888834 TTTTTCAGCAACCAGAAGGC 57.111 45.000 0.00 0.00 39.06 4.35
375 376 2.841160 GCCGGTCCACACGCTTTTT 61.841 57.895 1.90 0.00 0.00 1.94
376 377 3.284449 GCCGGTCCACACGCTTTT 61.284 61.111 1.90 0.00 0.00 2.27
384 385 3.842925 TTTCTGCTGGCCGGTCCAC 62.843 63.158 14.55 10.64 40.72 4.02
385 386 3.565214 TTTCTGCTGGCCGGTCCA 61.565 61.111 14.55 15.52 44.18 4.02
386 387 3.056328 GTTTCTGCTGGCCGGTCC 61.056 66.667 14.55 5.67 0.00 4.46
387 388 1.675641 ATGTTTCTGCTGGCCGGTC 60.676 57.895 14.55 0.00 0.00 4.79
388 389 1.973281 CATGTTTCTGCTGGCCGGT 60.973 57.895 14.55 0.00 0.00 5.28
389 390 1.675310 TCATGTTTCTGCTGGCCGG 60.675 57.895 7.41 7.41 0.00 6.13
390 391 1.503542 GTCATGTTTCTGCTGGCCG 59.496 57.895 0.00 0.00 0.00 6.13
391 392 0.895100 TGGTCATGTTTCTGCTGGCC 60.895 55.000 0.00 0.00 35.19 5.36
392 393 0.242017 GTGGTCATGTTTCTGCTGGC 59.758 55.000 0.00 0.00 0.00 4.85
393 394 1.608055 TGTGGTCATGTTTCTGCTGG 58.392 50.000 0.00 0.00 0.00 4.85
394 395 3.571571 CAATGTGGTCATGTTTCTGCTG 58.428 45.455 0.00 0.00 34.19 4.41
395 396 2.559668 CCAATGTGGTCATGTTTCTGCT 59.440 45.455 0.00 0.00 34.19 4.24
396 397 2.557924 TCCAATGTGGTCATGTTTCTGC 59.442 45.455 0.00 0.00 39.03 4.26
397 398 4.460034 TCATCCAATGTGGTCATGTTTCTG 59.540 41.667 0.00 0.00 39.03 3.02
398 399 4.460382 GTCATCCAATGTGGTCATGTTTCT 59.540 41.667 0.00 0.00 39.03 2.52
399 400 4.218200 TGTCATCCAATGTGGTCATGTTTC 59.782 41.667 0.00 0.00 39.03 2.78
400 401 4.151121 TGTCATCCAATGTGGTCATGTTT 58.849 39.130 0.00 0.00 39.03 2.83
401 402 3.765381 TGTCATCCAATGTGGTCATGTT 58.235 40.909 0.00 0.00 39.03 2.71
402 403 3.438216 TGTCATCCAATGTGGTCATGT 57.562 42.857 0.00 0.00 39.03 3.21
403 404 4.787260 TTTGTCATCCAATGTGGTCATG 57.213 40.909 0.00 0.00 39.03 3.07
404 405 4.588106 TGTTTTGTCATCCAATGTGGTCAT 59.412 37.500 0.00 0.00 39.03 3.06
405 406 3.956848 TGTTTTGTCATCCAATGTGGTCA 59.043 39.130 0.00 0.00 39.03 4.02
406 407 4.582701 TGTTTTGTCATCCAATGTGGTC 57.417 40.909 0.00 0.00 39.03 4.02
407 408 6.127366 GGATATGTTTTGTCATCCAATGTGGT 60.127 38.462 0.00 0.00 39.03 4.16
408 409 6.097270 AGGATATGTTTTGTCATCCAATGTGG 59.903 38.462 2.56 0.00 39.59 4.17
409 410 7.104043 AGGATATGTTTTGTCATCCAATGTG 57.896 36.000 2.56 0.00 39.59 3.21
410 411 8.686334 GTTAGGATATGTTTTGTCATCCAATGT 58.314 33.333 2.56 0.00 39.59 2.71
411 412 8.137437 GGTTAGGATATGTTTTGTCATCCAATG 58.863 37.037 2.56 0.00 39.59 2.82
412 413 7.838696 TGGTTAGGATATGTTTTGTCATCCAAT 59.161 33.333 2.56 0.00 39.59 3.16
413 414 7.122055 GTGGTTAGGATATGTTTTGTCATCCAA 59.878 37.037 2.56 0.00 39.59 3.53
414 415 6.601613 GTGGTTAGGATATGTTTTGTCATCCA 59.398 38.462 2.56 0.00 39.59 3.41
415 416 6.601613 TGTGGTTAGGATATGTTTTGTCATCC 59.398 38.462 0.00 0.00 37.76 3.51
416 417 7.472543 GTGTGGTTAGGATATGTTTTGTCATC 58.527 38.462 0.00 0.00 0.00 2.92
417 418 6.093495 CGTGTGGTTAGGATATGTTTTGTCAT 59.907 38.462 0.00 0.00 0.00 3.06
418 419 5.410132 CGTGTGGTTAGGATATGTTTTGTCA 59.590 40.000 0.00 0.00 0.00 3.58
419 420 5.163794 CCGTGTGGTTAGGATATGTTTTGTC 60.164 44.000 0.00 0.00 0.00 3.18
420 421 4.698304 CCGTGTGGTTAGGATATGTTTTGT 59.302 41.667 0.00 0.00 0.00 2.83
421 422 5.229921 CCGTGTGGTTAGGATATGTTTTG 57.770 43.478 0.00 0.00 0.00 2.44
436 437 0.248296 CAACCGTTTGAACCGTGTGG 60.248 55.000 0.00 0.00 36.62 4.17
437 438 0.863957 GCAACCGTTTGAACCGTGTG 60.864 55.000 0.00 0.00 34.24 3.82
438 439 1.430228 GCAACCGTTTGAACCGTGT 59.570 52.632 0.00 0.00 34.24 4.49
439 440 1.652930 CGCAACCGTTTGAACCGTG 60.653 57.895 0.00 0.00 34.24 4.94
440 441 2.710698 CGCAACCGTTTGAACCGT 59.289 55.556 0.00 0.00 34.24 4.83
441 442 2.051703 CCGCAACCGTTTGAACCG 60.052 61.111 0.00 0.00 34.24 4.44
442 443 2.333581 CCCGCAACCGTTTGAACC 59.666 61.111 0.00 0.00 34.24 3.62
443 444 2.354188 GCCCGCAACCGTTTGAAC 60.354 61.111 0.00 0.00 34.24 3.18
444 445 3.955101 CGCCCGCAACCGTTTGAA 61.955 61.111 0.00 0.00 34.24 2.69
450 451 3.317153 CTAAAACCGCCCGCAACCG 62.317 63.158 0.00 0.00 0.00 4.44
451 452 2.564458 CTAAAACCGCCCGCAACC 59.436 61.111 0.00 0.00 0.00 3.77
452 453 2.564458 CCTAAAACCGCCCGCAAC 59.436 61.111 0.00 0.00 0.00 4.17
453 454 2.673687 CCCTAAAACCGCCCGCAA 60.674 61.111 0.00 0.00 0.00 4.85
454 455 3.905437 GACCCTAAAACCGCCCGCA 62.905 63.158 0.00 0.00 0.00 5.69
455 456 3.129502 GACCCTAAAACCGCCCGC 61.130 66.667 0.00 0.00 0.00 6.13
456 457 2.437180 GGACCCTAAAACCGCCCG 60.437 66.667 0.00 0.00 0.00 6.13
457 458 2.437180 CGGACCCTAAAACCGCCC 60.437 66.667 0.00 0.00 40.19 6.13
458 459 2.437180 CCGGACCCTAAAACCGCC 60.437 66.667 0.00 0.00 44.45 6.13
459 460 2.437180 CCCGGACCCTAAAACCGC 60.437 66.667 0.73 0.00 44.45 5.68
460 461 0.956902 CAACCCGGACCCTAAAACCG 60.957 60.000 0.73 0.00 45.24 4.44
461 462 0.401356 TCAACCCGGACCCTAAAACC 59.599 55.000 0.73 0.00 0.00 3.27
462 463 2.156917 CTTCAACCCGGACCCTAAAAC 58.843 52.381 0.73 0.00 0.00 2.43
463 464 2.056359 TCTTCAACCCGGACCCTAAAA 58.944 47.619 0.73 0.00 0.00 1.52
464 465 1.732117 TCTTCAACCCGGACCCTAAA 58.268 50.000 0.73 0.00 0.00 1.85
465 466 1.557832 CATCTTCAACCCGGACCCTAA 59.442 52.381 0.73 0.00 0.00 2.69
466 467 1.200519 CATCTTCAACCCGGACCCTA 58.799 55.000 0.73 0.00 0.00 3.53
467 468 0.546747 TCATCTTCAACCCGGACCCT 60.547 55.000 0.73 0.00 0.00 4.34
468 469 0.392595 GTCATCTTCAACCCGGACCC 60.393 60.000 0.73 0.00 0.00 4.46
469 470 0.392595 GGTCATCTTCAACCCGGACC 60.393 60.000 0.73 0.00 38.15 4.46
470 471 0.613777 AGGTCATCTTCAACCCGGAC 59.386 55.000 0.73 0.00 36.11 4.79
471 472 1.358152 AAGGTCATCTTCAACCCGGA 58.642 50.000 0.73 0.00 36.11 5.14
472 473 2.629051 GTAAGGTCATCTTCAACCCGG 58.371 52.381 0.00 0.00 36.11 5.73
473 474 2.629051 GGTAAGGTCATCTTCAACCCG 58.371 52.381 0.00 0.00 36.11 5.28
474 475 3.000684 GGGTAAGGTCATCTTCAACCC 57.999 52.381 0.00 0.00 43.32 4.11
475 476 4.010349 CAAGGGTAAGGTCATCTTCAACC 58.990 47.826 0.00 0.00 36.93 3.77
480 481 8.950007 TTTTTATTCAAGGGTAAGGTCATCTT 57.050 30.769 0.00 0.00 39.40 2.40
486 487 8.485578 TGTTCATTTTTATTCAAGGGTAAGGT 57.514 30.769 0.00 0.00 0.00 3.50
490 491 9.974980 GACTTTGTTCATTTTTATTCAAGGGTA 57.025 29.630 0.00 0.00 0.00 3.69
509 512 0.389948 GAGCATCGACCCGACTTTGT 60.390 55.000 0.00 0.00 39.18 2.83
551 582 2.571206 GTGATTTTTCTTCGGCGACAC 58.429 47.619 10.16 8.27 0.00 3.67
557 588 1.401018 GCCGTGGTGATTTTTCTTCGG 60.401 52.381 0.00 0.00 39.71 4.30
599 631 0.387929 ACCGGACGTACCTGCATATG 59.612 55.000 9.46 0.00 36.31 1.78
600 632 1.884579 CTACCGGACGTACCTGCATAT 59.115 52.381 9.46 0.00 36.31 1.78
603 643 2.048023 CCTACCGGACGTACCTGCA 61.048 63.158 9.46 0.00 36.31 4.41
607 647 1.997928 GAGCACCTACCGGACGTACC 61.998 65.000 9.46 0.00 0.00 3.34
610 650 3.066814 GGAGCACCTACCGGACGT 61.067 66.667 9.46 0.00 0.00 4.34
778 820 0.387239 GCTAAGCGCCAACAACAAGG 60.387 55.000 2.29 0.00 0.00 3.61
819 861 1.798234 TTTTCTCGGAGCCGTGACGA 61.798 55.000 6.54 3.28 40.78 4.20
844 886 8.892723 TGTTGTATGATTGATTGATTGTAGTCC 58.107 33.333 0.00 0.00 0.00 3.85
1045 1104 3.680786 CTCCTCCGGTGACACGCA 61.681 66.667 4.76 0.00 0.00 5.24
1207 1266 4.731612 AGCACGCTGTCGGAGCTG 62.732 66.667 0.00 4.78 46.64 4.24
1255 1314 3.101209 CGGGACATGAACATGCGG 58.899 61.111 13.71 1.40 42.39 5.69
1335 1394 2.431771 CGATGAACGCGGTGGTGA 60.432 61.111 12.47 0.00 34.51 4.02
2290 2355 0.331278 AATTCATCCCGGAGCCACAA 59.669 50.000 0.73 0.00 0.00 3.33
2293 2358 1.531748 GGAATTCATCCCGGAGCCA 59.468 57.895 0.73 0.00 43.00 4.75
2308 2373 0.401356 TGTGCAATGCAGAGGAGGAA 59.599 50.000 8.73 0.00 40.08 3.36
2338 2407 7.874016 AGCTCTTGATTAAAATTTGCAATGTGA 59.126 29.630 0.00 0.00 0.00 3.58
2381 2453 6.128282 ACAATGTCGATGATTGGTTAGTTCAC 60.128 38.462 18.90 0.00 35.48 3.18
2399 2471 8.654230 TCTCAATAATCTTCTGCTACAATGTC 57.346 34.615 0.00 0.00 0.00 3.06
2430 2502 2.313172 CGCAGGTAGGCATCATCGC 61.313 63.158 0.00 0.00 0.00 4.58
2431 2503 0.665670 CTCGCAGGTAGGCATCATCG 60.666 60.000 0.00 0.00 0.00 3.84
2470 2545 1.872313 GCTCTTGATGGATAGCAGCAC 59.128 52.381 0.00 0.00 35.05 4.40
2519 2594 5.139727 TGGAGATTTGACATTGAGGTTTGT 58.860 37.500 0.00 0.00 0.00 2.83
2548 2623 1.808411 TGTTCATCGGTTCTTCTGGC 58.192 50.000 0.00 0.00 0.00 4.85
2574 2649 3.508793 CCTGTTGCTGTTTGATTCATCCT 59.491 43.478 0.00 0.00 0.00 3.24
2610 2687 4.260132 GCATTGCATTGTTTTGTTTCGTCA 60.260 37.500 10.11 0.00 0.00 4.35
2683 2765 2.044252 CCCCTGCTGCTGCTCATT 60.044 61.111 17.00 0.00 40.48 2.57
2769 2851 1.228552 GCTTTCTGAGGTTGGGCCA 60.229 57.895 0.00 0.00 40.61 5.36
2773 2855 2.301296 TCTCTCTGCTTTCTGAGGTTGG 59.699 50.000 0.00 0.00 38.40 3.77
2795 2877 2.210711 GGGATAGGAGCTCGGTGGG 61.211 68.421 7.83 0.00 0.00 4.61
2800 2882 1.342819 CAAGGAAGGGATAGGAGCTCG 59.657 57.143 7.83 0.00 0.00 5.03
2865 2947 1.696884 TCGGGCTACCATTGATATGCA 59.303 47.619 0.00 0.00 36.13 3.96
2869 2951 4.908601 AATCATCGGGCTACCATTGATA 57.091 40.909 0.00 0.00 37.15 2.15
2878 2960 4.022589 CCGACTTAACTAATCATCGGGCTA 60.023 45.833 2.57 0.00 44.18 3.93
3083 3186 3.984193 ATGAAGTGCCAGCGAGCCC 62.984 63.158 0.00 0.00 0.00 5.19
3084 3187 2.437359 ATGAAGTGCCAGCGAGCC 60.437 61.111 0.00 0.00 0.00 4.70
3085 3188 2.758089 CCATGAAGTGCCAGCGAGC 61.758 63.158 0.00 0.00 0.00 5.03
3086 3189 0.674581 TTCCATGAAGTGCCAGCGAG 60.675 55.000 0.00 0.00 0.00 5.03
3127 3240 0.038310 AAAAGGGAAAGCGGAGGGAG 59.962 55.000 0.00 0.00 0.00 4.30
3128 3241 0.037734 GAAAAGGGAAAGCGGAGGGA 59.962 55.000 0.00 0.00 0.00 4.20
3129 3242 0.965866 GGAAAAGGGAAAGCGGAGGG 60.966 60.000 0.00 0.00 0.00 4.30
3130 3243 0.038310 AGGAAAAGGGAAAGCGGAGG 59.962 55.000 0.00 0.00 0.00 4.30
3131 3244 1.911057 AAGGAAAAGGGAAAGCGGAG 58.089 50.000 0.00 0.00 0.00 4.63
3132 3245 2.235891 GAAAGGAAAAGGGAAAGCGGA 58.764 47.619 0.00 0.00 0.00 5.54
3133 3246 1.068541 CGAAAGGAAAAGGGAAAGCGG 60.069 52.381 0.00 0.00 0.00 5.52
3134 3247 1.607148 ACGAAAGGAAAAGGGAAAGCG 59.393 47.619 0.00 0.00 0.00 4.68
3234 3351 0.175302 CTGGCTGAGATCTTCGTGCT 59.825 55.000 0.00 0.00 0.00 4.40
3238 3355 3.271142 GCTCTGGCTGAGATCTTCG 57.729 57.895 23.60 0.00 45.39 3.79
3302 3429 9.567776 CCATTGACCTACCAACATAAATGTATA 57.432 33.333 0.00 0.00 40.80 1.47


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.