Multiple sequence alignment - TraesCS7B01G311200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G311200 chr7B 100.000 3716 0 0 1 3716 556605971 556609686 0.000000e+00 6863.0
1 TraesCS7B01G311200 chr7D 93.974 3236 113 33 48 3233 522808518 522811721 0.000000e+00 4820.0
2 TraesCS7B01G311200 chr7D 90.769 65 4 1 3229 3291 522811745 522811809 6.610000e-13 86.1
3 TraesCS7B01G311200 chr7A 91.157 3370 148 59 1 3280 602985611 602988920 0.000000e+00 4434.0
4 TraesCS7B01G311200 chr4A 97.872 94 1 1 2496 2589 646106635 646106543 1.070000e-35 161.0
5 TraesCS7B01G311200 chr4A 97.701 87 2 0 2500 2586 647943094 647943180 2.310000e-32 150.0
6 TraesCS7B01G311200 chr3B 75.538 372 56 24 3308 3652 49870812 49871175 2.310000e-32 150.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G311200 chr7B 556605971 556609686 3715 False 6863.00 6863 100.0000 1 3716 1 chr7B.!!$F1 3715
1 TraesCS7B01G311200 chr7D 522808518 522811809 3291 False 2453.05 4820 92.3715 48 3291 2 chr7D.!!$F1 3243
2 TraesCS7B01G311200 chr7A 602985611 602988920 3309 False 4434.00 4434 91.1570 1 3280 1 chr7A.!!$F1 3279

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
638 675 0.037734 GAAAAGGGAAAGCGGAGGGA 59.962 55.0 0.00 0.0 0.0 4.20 F
639 676 0.038310 AAAAGGGAAAGCGGAGGGAG 59.962 55.0 0.00 0.0 0.0 4.30 F
1476 1561 0.331278 AATTCATCCCGGAGCCACAA 59.669 50.0 0.73 0.0 0.0 3.33 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1473 1558 0.104855 TGAAGTCGCAGCTCACTTGT 59.895 50.0 10.59 0.0 32.83 3.16 R
2012 2097 0.107945 GCTCAGGTCCTTGTGGCTAG 60.108 60.0 0.00 0.0 0.00 3.42 R
3474 3624 0.033109 GAAGGGGGATTTCAGTGGGG 60.033 60.0 0.00 0.0 0.00 4.96 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.999001 GACGAAAAAGGGTTTATCCTCGT 59.001 43.478 0.00 0.00 42.15 4.18
34 35 9.774413 AGGGTTTATCCTCGTTTTATATTACAG 57.226 33.333 0.00 0.00 36.25 2.74
149 158 1.109323 AAAGTGCACAGTTCCAGCCC 61.109 55.000 21.04 0.00 0.00 5.19
183 197 2.500229 AGAAATGAAAAGGCGAACCGA 58.500 42.857 0.00 0.00 42.76 4.69
327 341 3.917760 GCCCGTAGATCTGGCGCT 61.918 66.667 7.64 0.00 36.75 5.92
351 371 1.445582 CGGACCAGTACCACGCTTC 60.446 63.158 0.00 0.00 0.00 3.86
372 393 2.423185 CCTTGCAAGGCATGTAAATCGA 59.577 45.455 31.70 0.00 39.76 3.59
382 405 2.325583 TGTAAATCGATCTGGCCACC 57.674 50.000 0.00 0.00 0.00 4.61
396 419 1.820581 CCACCGAGAATTAGCCCGA 59.179 57.895 0.00 0.00 0.00 5.14
397 420 0.249489 CCACCGAGAATTAGCCCGAG 60.249 60.000 0.00 0.00 0.00 4.63
398 421 0.460311 CACCGAGAATTAGCCCGAGT 59.540 55.000 0.00 0.00 0.00 4.18
464 487 9.567776 CCATTGACCTACCAACATAAATGTATA 57.432 33.333 0.00 0.00 40.80 1.47
528 561 3.271142 GCTCTGGCTGAGATCTTCG 57.729 57.895 23.60 0.00 45.39 3.79
532 565 0.175302 CTGGCTGAGATCTTCGTGCT 59.825 55.000 0.00 0.00 0.00 4.40
635 672 1.911057 AAGGAAAAGGGAAAGCGGAG 58.089 50.000 0.00 0.00 0.00 4.63
636 673 0.038310 AGGAAAAGGGAAAGCGGAGG 59.962 55.000 0.00 0.00 0.00 4.30
637 674 0.965866 GGAAAAGGGAAAGCGGAGGG 60.966 60.000 0.00 0.00 0.00 4.30
638 675 0.037734 GAAAAGGGAAAGCGGAGGGA 59.962 55.000 0.00 0.00 0.00 4.20
639 676 0.038310 AAAAGGGAAAGCGGAGGGAG 59.962 55.000 0.00 0.00 0.00 4.30
640 677 1.853250 AAAGGGAAAGCGGAGGGAGG 61.853 60.000 0.00 0.00 0.00 4.30
641 678 3.798511 GGGAAAGCGGAGGGAGGG 61.799 72.222 0.00 0.00 0.00 4.30
642 679 2.687566 GGAAAGCGGAGGGAGGGA 60.688 66.667 0.00 0.00 0.00 4.20
680 727 0.674581 TTCCATGAAGTGCCAGCGAG 60.675 55.000 0.00 0.00 0.00 5.03
681 728 2.758089 CCATGAAGTGCCAGCGAGC 61.758 63.158 0.00 0.00 0.00 5.03
682 729 2.437359 ATGAAGTGCCAGCGAGCC 60.437 61.111 0.00 0.00 0.00 4.70
683 730 3.984193 ATGAAGTGCCAGCGAGCCC 62.984 63.158 0.00 0.00 0.00 5.19
884 944 3.554337 CCCCCGACTTAACTAATCATCGG 60.554 52.174 3.53 3.53 46.77 4.18
888 956 4.022589 CCGACTTAACTAATCATCGGGCTA 60.023 45.833 2.57 0.00 44.18 3.93
897 965 4.908601 AATCATCGGGCTACCATTGATA 57.091 40.909 0.00 0.00 37.15 2.15
901 969 1.696884 TCGGGCTACCATTGATATGCA 59.303 47.619 0.00 0.00 36.13 3.96
966 1034 1.342819 CAAGGAAGGGATAGGAGCTCG 59.657 57.143 7.83 0.00 0.00 5.03
971 1039 2.210711 GGGATAGGAGCTCGGTGGG 61.211 68.421 7.83 0.00 0.00 4.61
993 1061 2.301296 TCTCTCTGCTTTCTGAGGTTGG 59.699 50.000 0.00 0.00 38.40 3.77
997 1065 1.228552 GCTTTCTGAGGTTGGGCCA 60.229 57.895 0.00 0.00 40.61 5.36
1083 1151 2.044252 CCCCTGCTGCTGCTCATT 60.044 61.111 17.00 0.00 40.48 2.57
1156 1229 4.260132 GCATTGCATTGTTTTGTTTCGTCA 60.260 37.500 10.11 0.00 0.00 4.35
1192 1265 3.508793 CCTGTTGCTGTTTGATTCATCCT 59.491 43.478 0.00 0.00 0.00 3.24
1218 1293 1.808411 TGTTCATCGGTTCTTCTGGC 58.192 50.000 0.00 0.00 0.00 4.85
1247 1322 5.139727 TGGAGATTTGACATTGAGGTTTGT 58.860 37.500 0.00 0.00 0.00 2.83
1296 1371 1.872313 GCTCTTGATGGATAGCAGCAC 59.128 52.381 0.00 0.00 35.05 4.40
1335 1410 0.665670 CTCGCAGGTAGGCATCATCG 60.666 60.000 0.00 0.00 0.00 3.84
1336 1411 2.313172 CGCAGGTAGGCATCATCGC 61.313 63.158 0.00 0.00 0.00 4.58
1367 1445 8.654230 TCTCAATAATCTTCTGCTACAATGTC 57.346 34.615 0.00 0.00 0.00 3.06
1385 1463 6.128282 ACAATGTCGATGATTGGTTAGTTCAC 60.128 38.462 18.90 0.00 35.48 3.18
1428 1509 7.874016 AGCTCTTGATTAAAATTTGCAATGTGA 59.126 29.630 0.00 0.00 0.00 3.58
1458 1543 0.401356 TGTGCAATGCAGAGGAGGAA 59.599 50.000 8.73 0.00 40.08 3.36
1473 1558 1.531748 GGAATTCATCCCGGAGCCA 59.468 57.895 0.73 0.00 43.00 4.75
1476 1561 0.331278 AATTCATCCCGGAGCCACAA 59.669 50.000 0.73 0.00 0.00 3.33
2431 2522 2.431771 CGATGAACGCGGTGGTGA 60.432 61.111 12.47 0.00 34.51 4.02
2511 2602 3.101209 CGGGACATGAACATGCGG 58.899 61.111 13.71 1.40 42.39 5.69
2559 2650 4.731612 AGCACGCTGTCGGAGCTG 62.732 66.667 0.00 4.78 46.64 4.24
2721 2812 3.680786 CTCCTCCGGTGACACGCA 61.681 66.667 4.76 0.00 0.00 5.24
2922 3030 8.892723 TGTTGTATGATTGATTGATTGTAGTCC 58.107 33.333 0.00 0.00 0.00 3.85
2947 3055 1.798234 TTTTCTCGGAGCCGTGACGA 61.798 55.000 6.54 3.28 40.78 4.20
2988 3096 0.387239 GCTAAGCGCCAACAACAAGG 60.387 55.000 2.29 0.00 0.00 3.61
3156 3266 3.066814 GGAGCACCTACCGGACGT 61.067 66.667 9.46 0.00 0.00 4.34
3159 3269 1.997928 GAGCACCTACCGGACGTACC 61.998 65.000 9.46 0.00 0.00 3.34
3163 3273 2.048023 CCTACCGGACGTACCTGCA 61.048 63.158 9.46 0.00 36.31 4.41
3166 3276 1.884579 CTACCGGACGTACCTGCATAT 59.115 52.381 9.46 0.00 36.31 1.78
3167 3277 0.387929 ACCGGACGTACCTGCATATG 59.612 55.000 9.46 0.00 36.31 1.78
3209 3328 1.401018 GCCGTGGTGATTTTTCTTCGG 60.401 52.381 0.00 0.00 39.71 4.30
3215 3334 2.571206 GTGATTTTTCTTCGGCGACAC 58.429 47.619 10.16 8.27 0.00 3.67
3257 3405 0.389948 GAGCATCGACCCGACTTTGT 60.390 55.000 0.00 0.00 39.18 2.83
3276 3426 9.974980 GACTTTGTTCATTTTTATTCAAGGGTA 57.025 29.630 0.00 0.00 0.00 3.69
3280 3430 8.485578 TGTTCATTTTTATTCAAGGGTAAGGT 57.514 30.769 0.00 0.00 0.00 3.50
3286 3436 8.950007 TTTTTATTCAAGGGTAAGGTCATCTT 57.050 30.769 0.00 0.00 39.40 2.40
3291 3441 4.010349 CAAGGGTAAGGTCATCTTCAACC 58.990 47.826 0.00 0.00 36.93 3.77
3292 3442 3.000684 GGGTAAGGTCATCTTCAACCC 57.999 52.381 0.00 0.00 43.32 4.11
3293 3443 2.629051 GGTAAGGTCATCTTCAACCCG 58.371 52.381 0.00 0.00 36.11 5.28
3294 3444 2.629051 GTAAGGTCATCTTCAACCCGG 58.371 52.381 0.00 0.00 36.11 5.73
3295 3445 1.358152 AAGGTCATCTTCAACCCGGA 58.642 50.000 0.73 0.00 36.11 5.14
3296 3446 0.613777 AGGTCATCTTCAACCCGGAC 59.386 55.000 0.73 0.00 36.11 4.79
3297 3447 0.392595 GGTCATCTTCAACCCGGACC 60.393 60.000 0.73 0.00 38.15 4.46
3298 3448 0.392595 GTCATCTTCAACCCGGACCC 60.393 60.000 0.73 0.00 0.00 4.46
3299 3449 0.546747 TCATCTTCAACCCGGACCCT 60.547 55.000 0.73 0.00 0.00 4.34
3300 3450 1.200519 CATCTTCAACCCGGACCCTA 58.799 55.000 0.73 0.00 0.00 3.53
3301 3451 1.557832 CATCTTCAACCCGGACCCTAA 59.442 52.381 0.73 0.00 0.00 2.69
3302 3452 1.732117 TCTTCAACCCGGACCCTAAA 58.268 50.000 0.73 0.00 0.00 1.85
3303 3453 2.056359 TCTTCAACCCGGACCCTAAAA 58.944 47.619 0.73 0.00 0.00 1.52
3304 3454 2.156917 CTTCAACCCGGACCCTAAAAC 58.843 52.381 0.73 0.00 0.00 2.43
3305 3455 0.401356 TCAACCCGGACCCTAAAACC 59.599 55.000 0.73 0.00 0.00 3.27
3306 3456 0.956902 CAACCCGGACCCTAAAACCG 60.957 60.000 0.73 0.00 45.24 4.44
3307 3457 2.437180 CCCGGACCCTAAAACCGC 60.437 66.667 0.73 0.00 44.45 5.68
3308 3458 2.437180 CCGGACCCTAAAACCGCC 60.437 66.667 0.00 0.00 44.45 6.13
3309 3459 2.437180 CGGACCCTAAAACCGCCC 60.437 66.667 0.00 0.00 40.19 6.13
3310 3460 2.437180 GGACCCTAAAACCGCCCG 60.437 66.667 0.00 0.00 0.00 6.13
3311 3461 3.129502 GACCCTAAAACCGCCCGC 61.130 66.667 0.00 0.00 0.00 6.13
3312 3462 3.905437 GACCCTAAAACCGCCCGCA 62.905 63.158 0.00 0.00 0.00 5.69
3313 3463 2.673687 CCCTAAAACCGCCCGCAA 60.674 61.111 0.00 0.00 0.00 4.85
3314 3464 2.564458 CCTAAAACCGCCCGCAAC 59.436 61.111 0.00 0.00 0.00 4.17
3315 3465 2.564458 CTAAAACCGCCCGCAACC 59.436 61.111 0.00 0.00 0.00 3.77
3316 3466 3.317153 CTAAAACCGCCCGCAACCG 62.317 63.158 0.00 0.00 0.00 4.44
3322 3472 3.955101 CGCCCGCAACCGTTTGAA 61.955 61.111 0.00 0.00 34.24 2.69
3323 3473 2.354188 GCCCGCAACCGTTTGAAC 60.354 61.111 0.00 0.00 34.24 3.18
3324 3474 2.333581 CCCGCAACCGTTTGAACC 59.666 61.111 0.00 0.00 34.24 3.62
3325 3475 2.051703 CCGCAACCGTTTGAACCG 60.052 61.111 0.00 0.00 34.24 4.44
3326 3476 2.710698 CGCAACCGTTTGAACCGT 59.289 55.556 0.00 0.00 34.24 4.83
3327 3477 1.652930 CGCAACCGTTTGAACCGTG 60.653 57.895 0.00 0.00 34.24 4.94
3328 3478 1.430228 GCAACCGTTTGAACCGTGT 59.570 52.632 0.00 0.00 34.24 4.49
3329 3479 0.863957 GCAACCGTTTGAACCGTGTG 60.864 55.000 0.00 0.00 34.24 3.82
3330 3480 0.248296 CAACCGTTTGAACCGTGTGG 60.248 55.000 0.00 0.00 36.62 4.17
3345 3495 5.229921 CCGTGTGGTTAGGATATGTTTTG 57.770 43.478 0.00 0.00 0.00 2.44
3346 3496 4.698304 CCGTGTGGTTAGGATATGTTTTGT 59.302 41.667 0.00 0.00 0.00 2.83
3347 3497 5.163794 CCGTGTGGTTAGGATATGTTTTGTC 60.164 44.000 0.00 0.00 0.00 3.18
3348 3498 5.410132 CGTGTGGTTAGGATATGTTTTGTCA 59.590 40.000 0.00 0.00 0.00 3.58
3349 3499 6.093495 CGTGTGGTTAGGATATGTTTTGTCAT 59.907 38.462 0.00 0.00 0.00 3.06
3350 3500 7.472543 GTGTGGTTAGGATATGTTTTGTCATC 58.527 38.462 0.00 0.00 0.00 2.92
3351 3501 6.601613 TGTGGTTAGGATATGTTTTGTCATCC 59.398 38.462 0.00 0.00 37.76 3.51
3352 3502 6.601613 GTGGTTAGGATATGTTTTGTCATCCA 59.398 38.462 2.56 0.00 39.59 3.41
3353 3503 7.122055 GTGGTTAGGATATGTTTTGTCATCCAA 59.878 37.037 2.56 0.00 39.59 3.53
3354 3504 7.838696 TGGTTAGGATATGTTTTGTCATCCAAT 59.161 33.333 2.56 0.00 39.59 3.16
3355 3505 8.137437 GGTTAGGATATGTTTTGTCATCCAATG 58.863 37.037 2.56 0.00 39.59 2.82
3356 3506 8.686334 GTTAGGATATGTTTTGTCATCCAATGT 58.314 33.333 2.56 0.00 39.59 2.71
3357 3507 7.104043 AGGATATGTTTTGTCATCCAATGTG 57.896 36.000 2.56 0.00 39.59 3.21
3358 3508 6.097270 AGGATATGTTTTGTCATCCAATGTGG 59.903 38.462 2.56 0.00 39.59 4.17
3359 3509 6.127366 GGATATGTTTTGTCATCCAATGTGGT 60.127 38.462 0.00 0.00 39.03 4.16
3360 3510 4.582701 TGTTTTGTCATCCAATGTGGTC 57.417 40.909 0.00 0.00 39.03 4.02
3361 3511 3.956848 TGTTTTGTCATCCAATGTGGTCA 59.043 39.130 0.00 0.00 39.03 4.02
3362 3512 4.588106 TGTTTTGTCATCCAATGTGGTCAT 59.412 37.500 0.00 0.00 39.03 3.06
3363 3513 4.787260 TTTGTCATCCAATGTGGTCATG 57.213 40.909 0.00 0.00 39.03 3.07
3364 3514 3.438216 TGTCATCCAATGTGGTCATGT 57.562 42.857 0.00 0.00 39.03 3.21
3365 3515 3.765381 TGTCATCCAATGTGGTCATGTT 58.235 40.909 0.00 0.00 39.03 2.71
3366 3516 4.151121 TGTCATCCAATGTGGTCATGTTT 58.849 39.130 0.00 0.00 39.03 2.83
3367 3517 4.218200 TGTCATCCAATGTGGTCATGTTTC 59.782 41.667 0.00 0.00 39.03 2.78
3368 3518 4.460382 GTCATCCAATGTGGTCATGTTTCT 59.540 41.667 0.00 0.00 39.03 2.52
3369 3519 4.460034 TCATCCAATGTGGTCATGTTTCTG 59.540 41.667 0.00 0.00 39.03 3.02
3370 3520 2.557924 TCCAATGTGGTCATGTTTCTGC 59.442 45.455 0.00 0.00 39.03 4.26
3371 3521 2.559668 CCAATGTGGTCATGTTTCTGCT 59.440 45.455 0.00 0.00 34.19 4.24
3372 3522 3.571571 CAATGTGGTCATGTTTCTGCTG 58.428 45.455 0.00 0.00 34.19 4.41
3373 3523 1.608055 TGTGGTCATGTTTCTGCTGG 58.392 50.000 0.00 0.00 0.00 4.85
3374 3524 0.242017 GTGGTCATGTTTCTGCTGGC 59.758 55.000 0.00 0.00 0.00 4.85
3375 3525 0.895100 TGGTCATGTTTCTGCTGGCC 60.895 55.000 0.00 0.00 35.19 5.36
3376 3526 1.503542 GTCATGTTTCTGCTGGCCG 59.496 57.895 0.00 0.00 0.00 6.13
3377 3527 1.675310 TCATGTTTCTGCTGGCCGG 60.675 57.895 7.41 7.41 0.00 6.13
3378 3528 1.973281 CATGTTTCTGCTGGCCGGT 60.973 57.895 14.55 0.00 0.00 5.28
3379 3529 1.675641 ATGTTTCTGCTGGCCGGTC 60.676 57.895 14.55 0.00 0.00 4.79
3380 3530 3.056328 GTTTCTGCTGGCCGGTCC 61.056 66.667 14.55 5.67 0.00 4.46
3381 3531 3.565214 TTTCTGCTGGCCGGTCCA 61.565 61.111 14.55 15.52 44.18 4.02
3382 3532 3.842925 TTTCTGCTGGCCGGTCCAC 62.843 63.158 14.55 10.64 40.72 4.02
3390 3540 3.284449 GCCGGTCCACACGCTTTT 61.284 61.111 1.90 0.00 0.00 2.27
3391 3541 2.841160 GCCGGTCCACACGCTTTTT 61.841 57.895 1.90 0.00 0.00 1.94
3410 3560 2.888834 TTTTTCAGCAACCAGAAGGC 57.111 45.000 0.00 0.00 39.06 4.35
3411 3561 1.774110 TTTTCAGCAACCAGAAGGCA 58.226 45.000 0.00 0.00 39.06 4.75
3412 3562 1.774110 TTTCAGCAACCAGAAGGCAA 58.226 45.000 0.00 0.00 39.06 4.52
3413 3563 1.774110 TTCAGCAACCAGAAGGCAAA 58.226 45.000 0.00 0.00 39.06 3.68
3414 3564 1.032014 TCAGCAACCAGAAGGCAAAC 58.968 50.000 0.00 0.00 39.06 2.93
3415 3565 1.035139 CAGCAACCAGAAGGCAAACT 58.965 50.000 0.00 0.00 39.06 2.66
3416 3566 1.000938 CAGCAACCAGAAGGCAAACTC 60.001 52.381 0.00 0.00 39.06 3.01
3417 3567 0.040067 GCAACCAGAAGGCAAACTCG 60.040 55.000 0.00 0.00 39.06 4.18
3418 3568 0.593128 CAACCAGAAGGCAAACTCGG 59.407 55.000 0.00 0.00 39.06 4.63
3419 3569 0.537371 AACCAGAAGGCAAACTCGGG 60.537 55.000 0.00 0.00 39.06 5.14
3420 3570 1.675641 CCAGAAGGCAAACTCGGGG 60.676 63.158 0.00 0.00 0.00 5.73
3421 3571 1.374947 CAGAAGGCAAACTCGGGGA 59.625 57.895 0.00 0.00 0.00 4.81
3422 3572 0.250727 CAGAAGGCAAACTCGGGGAA 60.251 55.000 0.00 0.00 0.00 3.97
3423 3573 0.036875 AGAAGGCAAACTCGGGGAAG 59.963 55.000 0.00 0.00 0.00 3.46
3424 3574 0.960861 GAAGGCAAACTCGGGGAAGG 60.961 60.000 0.00 0.00 0.00 3.46
3425 3575 2.361230 GGCAAACTCGGGGAAGGG 60.361 66.667 0.00 0.00 0.00 3.95
3426 3576 2.361230 GCAAACTCGGGGAAGGGG 60.361 66.667 0.00 0.00 0.00 4.79
3427 3577 2.355115 CAAACTCGGGGAAGGGGG 59.645 66.667 0.00 0.00 0.00 5.40
3428 3578 2.208932 AAACTCGGGGAAGGGGGA 59.791 61.111 0.00 0.00 0.00 4.81
3429 3579 1.923909 AAACTCGGGGAAGGGGGAG 60.924 63.158 0.00 0.00 0.00 4.30
3430 3580 3.945064 AACTCGGGGAAGGGGGAGG 62.945 68.421 0.00 0.00 0.00 4.30
3436 3586 2.947217 GGAAGGGGGAGGGGCTTT 60.947 66.667 0.00 0.00 0.00 3.51
3437 3587 2.360585 GAAGGGGGAGGGGCTTTG 59.639 66.667 0.00 0.00 0.00 2.77
3438 3588 3.965026 GAAGGGGGAGGGGCTTTGC 62.965 68.421 0.00 0.00 0.00 3.68
3440 3590 4.766632 GGGGGAGGGGCTTTGCAG 62.767 72.222 0.00 0.00 0.00 4.41
3441 3591 4.766632 GGGGAGGGGCTTTGCAGG 62.767 72.222 0.00 0.00 0.00 4.85
3442 3592 3.661648 GGGAGGGGCTTTGCAGGA 61.662 66.667 0.00 0.00 0.00 3.86
3443 3593 2.044551 GGAGGGGCTTTGCAGGAG 60.045 66.667 0.00 0.00 0.00 3.69
3444 3594 2.759795 GAGGGGCTTTGCAGGAGT 59.240 61.111 0.00 0.00 0.00 3.85
3445 3595 1.676967 GAGGGGCTTTGCAGGAGTG 60.677 63.158 0.00 0.00 0.00 3.51
3446 3596 2.116125 GGGGCTTTGCAGGAGTGT 59.884 61.111 0.00 0.00 0.00 3.55
3447 3597 2.270986 GGGGCTTTGCAGGAGTGTG 61.271 63.158 0.00 0.00 0.00 3.82
3448 3598 2.270986 GGGCTTTGCAGGAGTGTGG 61.271 63.158 0.00 0.00 0.00 4.17
3449 3599 1.228245 GGCTTTGCAGGAGTGTGGA 60.228 57.895 0.00 0.00 0.00 4.02
3450 3600 1.518903 GGCTTTGCAGGAGTGTGGAC 61.519 60.000 0.00 0.00 0.00 4.02
3451 3601 0.819259 GCTTTGCAGGAGTGTGGACA 60.819 55.000 0.00 0.00 0.00 4.02
3452 3602 0.947244 CTTTGCAGGAGTGTGGACAC 59.053 55.000 1.42 1.42 46.77 3.67
3461 3611 3.000815 GTGTGGACACCAATCACGT 57.999 52.632 0.00 0.00 40.85 4.49
3462 3612 2.157834 GTGTGGACACCAATCACGTA 57.842 50.000 0.00 0.00 40.85 3.57
3463 3613 2.066262 GTGTGGACACCAATCACGTAG 58.934 52.381 0.00 0.00 40.85 3.51
3464 3614 1.001520 TGTGGACACCAATCACGTAGG 59.998 52.381 0.00 0.00 34.18 3.18
3465 3615 1.274167 GTGGACACCAATCACGTAGGA 59.726 52.381 0.00 0.00 34.18 2.94
3466 3616 1.274167 TGGACACCAATCACGTAGGAC 59.726 52.381 0.00 0.00 0.00 3.85
3467 3617 1.549170 GGACACCAATCACGTAGGACT 59.451 52.381 0.00 0.00 0.00 3.85
3468 3618 2.416972 GGACACCAATCACGTAGGACTC 60.417 54.545 0.00 0.00 0.00 3.36
3469 3619 1.549170 ACACCAATCACGTAGGACTCC 59.451 52.381 0.00 0.00 0.00 3.85
3470 3620 0.815734 ACCAATCACGTAGGACTCCG 59.184 55.000 0.00 0.00 0.00 4.63
3471 3621 1.100510 CCAATCACGTAGGACTCCGA 58.899 55.000 0.00 0.00 0.00 4.55
3472 3622 1.202268 CCAATCACGTAGGACTCCGAC 60.202 57.143 0.00 0.00 0.00 4.79
3473 3623 1.471287 CAATCACGTAGGACTCCGACA 59.529 52.381 8.84 0.00 0.00 4.35
3474 3624 1.093159 ATCACGTAGGACTCCGACAC 58.907 55.000 8.84 0.00 0.00 3.67
3475 3625 0.957395 TCACGTAGGACTCCGACACC 60.957 60.000 8.84 0.00 0.00 4.16
3476 3626 1.676967 ACGTAGGACTCCGACACCC 60.677 63.158 8.84 0.00 0.00 4.61
3477 3627 2.413142 CGTAGGACTCCGACACCCC 61.413 68.421 8.84 0.00 0.00 4.95
3478 3628 1.304713 GTAGGACTCCGACACCCCA 60.305 63.158 3.55 0.00 0.00 4.96
3479 3629 1.304713 TAGGACTCCGACACCCCAC 60.305 63.158 0.00 0.00 0.00 4.61
3480 3630 1.797018 TAGGACTCCGACACCCCACT 61.797 60.000 0.00 0.00 0.00 4.00
3481 3631 2.657237 GACTCCGACACCCCACTG 59.343 66.667 0.00 0.00 0.00 3.66
3482 3632 1.906824 GACTCCGACACCCCACTGA 60.907 63.158 0.00 0.00 0.00 3.41
3483 3633 1.458777 ACTCCGACACCCCACTGAA 60.459 57.895 0.00 0.00 0.00 3.02
3484 3634 1.052124 ACTCCGACACCCCACTGAAA 61.052 55.000 0.00 0.00 0.00 2.69
3485 3635 0.324943 CTCCGACACCCCACTGAAAT 59.675 55.000 0.00 0.00 0.00 2.17
3486 3636 0.323629 TCCGACACCCCACTGAAATC 59.676 55.000 0.00 0.00 0.00 2.17
3487 3637 0.676782 CCGACACCCCACTGAAATCC 60.677 60.000 0.00 0.00 0.00 3.01
3488 3638 0.676782 CGACACCCCACTGAAATCCC 60.677 60.000 0.00 0.00 0.00 3.85
3489 3639 0.323451 GACACCCCACTGAAATCCCC 60.323 60.000 0.00 0.00 0.00 4.81
3490 3640 1.000359 CACCCCACTGAAATCCCCC 60.000 63.158 0.00 0.00 0.00 5.40
3491 3641 1.151361 ACCCCACTGAAATCCCCCT 60.151 57.895 0.00 0.00 0.00 4.79
3492 3642 0.780090 ACCCCACTGAAATCCCCCTT 60.780 55.000 0.00 0.00 0.00 3.95
3493 3643 0.033109 CCCCACTGAAATCCCCCTTC 60.033 60.000 0.00 0.00 0.00 3.46
3494 3644 0.033109 CCCACTGAAATCCCCCTTCC 60.033 60.000 0.00 0.00 0.00 3.46
3495 3645 0.394352 CCACTGAAATCCCCCTTCCG 60.394 60.000 0.00 0.00 0.00 4.30
3496 3646 0.394352 CACTGAAATCCCCCTTCCGG 60.394 60.000 0.00 0.00 0.00 5.14
3497 3647 0.845102 ACTGAAATCCCCCTTCCGGT 60.845 55.000 0.00 0.00 0.00 5.28
3498 3648 0.107165 CTGAAATCCCCCTTCCGGTC 60.107 60.000 0.00 0.00 0.00 4.79
3499 3649 0.549169 TGAAATCCCCCTTCCGGTCT 60.549 55.000 0.00 0.00 0.00 3.85
3500 3650 0.624254 GAAATCCCCCTTCCGGTCTT 59.376 55.000 0.00 0.00 0.00 3.01
3501 3651 0.624254 AAATCCCCCTTCCGGTCTTC 59.376 55.000 0.00 0.00 0.00 2.87
3502 3652 0.253207 AATCCCCCTTCCGGTCTTCT 60.253 55.000 0.00 0.00 0.00 2.85
3503 3653 0.253207 ATCCCCCTTCCGGTCTTCTT 60.253 55.000 0.00 0.00 0.00 2.52
3504 3654 0.475048 TCCCCCTTCCGGTCTTCTTT 60.475 55.000 0.00 0.00 0.00 2.52
3505 3655 0.404426 CCCCCTTCCGGTCTTCTTTT 59.596 55.000 0.00 0.00 0.00 2.27
3506 3656 1.613520 CCCCCTTCCGGTCTTCTTTTC 60.614 57.143 0.00 0.00 0.00 2.29
3507 3657 1.351350 CCCCTTCCGGTCTTCTTTTCT 59.649 52.381 0.00 0.00 0.00 2.52
3508 3658 2.224793 CCCCTTCCGGTCTTCTTTTCTT 60.225 50.000 0.00 0.00 0.00 2.52
3509 3659 3.075148 CCCTTCCGGTCTTCTTTTCTTC 58.925 50.000 0.00 0.00 0.00 2.87
3510 3660 3.075148 CCTTCCGGTCTTCTTTTCTTCC 58.925 50.000 0.00 0.00 0.00 3.46
3511 3661 3.496160 CCTTCCGGTCTTCTTTTCTTCCA 60.496 47.826 0.00 0.00 0.00 3.53
3512 3662 3.121738 TCCGGTCTTCTTTTCTTCCAC 57.878 47.619 0.00 0.00 0.00 4.02
3513 3663 2.704065 TCCGGTCTTCTTTTCTTCCACT 59.296 45.455 0.00 0.00 0.00 4.00
3514 3664 3.067833 CCGGTCTTCTTTTCTTCCACTC 58.932 50.000 0.00 0.00 0.00 3.51
3515 3665 3.067833 CGGTCTTCTTTTCTTCCACTCC 58.932 50.000 0.00 0.00 0.00 3.85
3516 3666 3.494398 CGGTCTTCTTTTCTTCCACTCCA 60.494 47.826 0.00 0.00 0.00 3.86
3517 3667 3.815962 GGTCTTCTTTTCTTCCACTCCAC 59.184 47.826 0.00 0.00 0.00 4.02
3518 3668 3.815962 GTCTTCTTTTCTTCCACTCCACC 59.184 47.826 0.00 0.00 0.00 4.61
3519 3669 2.951229 TCTTTTCTTCCACTCCACCC 57.049 50.000 0.00 0.00 0.00 4.61
3520 3670 2.131854 TCTTTTCTTCCACTCCACCCA 58.868 47.619 0.00 0.00 0.00 4.51
3521 3671 2.716424 TCTTTTCTTCCACTCCACCCAT 59.284 45.455 0.00 0.00 0.00 4.00
3522 3672 2.584835 TTTCTTCCACTCCACCCATG 57.415 50.000 0.00 0.00 0.00 3.66
3523 3673 0.038166 TTCTTCCACTCCACCCATGC 59.962 55.000 0.00 0.00 0.00 4.06
3524 3674 0.842030 TCTTCCACTCCACCCATGCT 60.842 55.000 0.00 0.00 0.00 3.79
3525 3675 0.393537 CTTCCACTCCACCCATGCTC 60.394 60.000 0.00 0.00 0.00 4.26
3526 3676 1.852157 TTCCACTCCACCCATGCTCC 61.852 60.000 0.00 0.00 0.00 4.70
3527 3677 2.304056 CCACTCCACCCATGCTCCT 61.304 63.158 0.00 0.00 0.00 3.69
3528 3678 1.222936 CACTCCACCCATGCTCCTC 59.777 63.158 0.00 0.00 0.00 3.71
3529 3679 1.997874 ACTCCACCCATGCTCCTCC 60.998 63.158 0.00 0.00 0.00 4.30
3530 3680 2.692368 TCCACCCATGCTCCTCCC 60.692 66.667 0.00 0.00 0.00 4.30
3531 3681 2.693864 CCACCCATGCTCCTCCCT 60.694 66.667 0.00 0.00 0.00 4.20
3532 3682 2.311854 CCACCCATGCTCCTCCCTT 61.312 63.158 0.00 0.00 0.00 3.95
3533 3683 1.225704 CACCCATGCTCCTCCCTTC 59.774 63.158 0.00 0.00 0.00 3.46
3534 3684 2.003548 ACCCATGCTCCTCCCTTCC 61.004 63.158 0.00 0.00 0.00 3.46
3535 3685 1.695597 CCCATGCTCCTCCCTTCCT 60.696 63.158 0.00 0.00 0.00 3.36
3536 3686 1.284841 CCCATGCTCCTCCCTTCCTT 61.285 60.000 0.00 0.00 0.00 3.36
3537 3687 0.627986 CCATGCTCCTCCCTTCCTTT 59.372 55.000 0.00 0.00 0.00 3.11
3538 3688 1.409381 CCATGCTCCTCCCTTCCTTTC 60.409 57.143 0.00 0.00 0.00 2.62
3539 3689 1.283029 CATGCTCCTCCCTTCCTTTCA 59.717 52.381 0.00 0.00 0.00 2.69
3540 3690 1.673767 TGCTCCTCCCTTCCTTTCAT 58.326 50.000 0.00 0.00 0.00 2.57
3541 3691 1.561542 TGCTCCTCCCTTCCTTTCATC 59.438 52.381 0.00 0.00 0.00 2.92
3542 3692 1.843206 GCTCCTCCCTTCCTTTCATCT 59.157 52.381 0.00 0.00 0.00 2.90
3543 3693 2.421248 GCTCCTCCCTTCCTTTCATCTG 60.421 54.545 0.00 0.00 0.00 2.90
3544 3694 1.561542 TCCTCCCTTCCTTTCATCTGC 59.438 52.381 0.00 0.00 0.00 4.26
3545 3695 1.283029 CCTCCCTTCCTTTCATCTGCA 59.717 52.381 0.00 0.00 0.00 4.41
3546 3696 2.363683 CTCCCTTCCTTTCATCTGCAC 58.636 52.381 0.00 0.00 0.00 4.57
3547 3697 1.004745 TCCCTTCCTTTCATCTGCACC 59.995 52.381 0.00 0.00 0.00 5.01
3548 3698 1.467920 CCTTCCTTTCATCTGCACCC 58.532 55.000 0.00 0.00 0.00 4.61
3549 3699 1.467920 CTTCCTTTCATCTGCACCCC 58.532 55.000 0.00 0.00 0.00 4.95
3550 3700 1.005215 CTTCCTTTCATCTGCACCCCT 59.995 52.381 0.00 0.00 0.00 4.79
3551 3701 0.620556 TCCTTTCATCTGCACCCCTC 59.379 55.000 0.00 0.00 0.00 4.30
3552 3702 0.745845 CCTTTCATCTGCACCCCTCG 60.746 60.000 0.00 0.00 0.00 4.63
3553 3703 1.372087 CTTTCATCTGCACCCCTCGC 61.372 60.000 0.00 0.00 0.00 5.03
3554 3704 2.819984 TTTCATCTGCACCCCTCGCC 62.820 60.000 0.00 0.00 0.00 5.54
3565 3715 4.351938 CCTCGCCGGTTCACGTCA 62.352 66.667 1.90 0.00 42.24 4.35
3566 3716 2.126071 CTCGCCGGTTCACGTCAT 60.126 61.111 1.90 0.00 42.24 3.06
3567 3717 2.126228 TCGCCGGTTCACGTCATC 60.126 61.111 1.90 0.00 42.24 2.92
3568 3718 3.541831 CGCCGGTTCACGTCATCG 61.542 66.667 1.90 0.00 42.24 3.84
3581 3731 2.174764 CGTCATCGTTGTACCTCTTCG 58.825 52.381 0.00 0.00 0.00 3.79
3582 3732 2.527100 GTCATCGTTGTACCTCTTCGG 58.473 52.381 0.00 0.00 39.35 4.30
3583 3733 2.163010 GTCATCGTTGTACCTCTTCGGA 59.837 50.000 0.00 0.00 36.31 4.55
3584 3734 2.163010 TCATCGTTGTACCTCTTCGGAC 59.837 50.000 0.00 0.00 36.31 4.79
3585 3735 0.518636 TCGTTGTACCTCTTCGGACG 59.481 55.000 0.00 0.00 36.31 4.79
3586 3736 1.069378 CGTTGTACCTCTTCGGACGC 61.069 60.000 0.00 0.00 36.31 5.19
3587 3737 0.735287 GTTGTACCTCTTCGGACGCC 60.735 60.000 0.00 0.00 36.31 5.68
3588 3738 1.180456 TTGTACCTCTTCGGACGCCA 61.180 55.000 0.00 0.00 36.31 5.69
3589 3739 1.153881 GTACCTCTTCGGACGCCAC 60.154 63.158 0.00 0.00 36.31 5.01
3590 3740 2.345760 TACCTCTTCGGACGCCACC 61.346 63.158 0.00 0.00 36.31 4.61
3591 3741 3.691342 CCTCTTCGGACGCCACCA 61.691 66.667 0.00 0.00 33.16 4.17
3592 3742 2.125912 CTCTTCGGACGCCACCAG 60.126 66.667 0.00 0.00 0.00 4.00
3593 3743 3.649277 CTCTTCGGACGCCACCAGG 62.649 68.421 0.00 0.00 38.23 4.45
3594 3744 3.691342 CTTCGGACGCCACCAGGA 61.691 66.667 0.00 0.00 36.89 3.86
3595 3745 3.234630 CTTCGGACGCCACCAGGAA 62.235 63.158 0.00 0.00 36.89 3.36
3596 3746 2.521958 CTTCGGACGCCACCAGGAAT 62.522 60.000 0.00 0.00 36.89 3.01
3597 3747 2.511600 CGGACGCCACCAGGAATC 60.512 66.667 0.00 0.00 36.89 2.52
3598 3748 2.124695 GGACGCCACCAGGAATCC 60.125 66.667 0.00 0.00 36.89 3.01
3599 3749 2.670148 GGACGCCACCAGGAATCCT 61.670 63.158 0.00 0.00 37.44 3.24
3600 3750 1.153349 GACGCCACCAGGAATCCTC 60.153 63.158 0.00 0.00 36.89 3.71
3601 3751 2.202932 CGCCACCAGGAATCCTCG 60.203 66.667 0.00 0.00 36.89 4.63
3602 3752 2.721167 CGCCACCAGGAATCCTCGA 61.721 63.158 0.00 0.00 36.89 4.04
3603 3753 1.602237 GCCACCAGGAATCCTCGAA 59.398 57.895 0.00 0.00 36.89 3.71
3604 3754 0.744771 GCCACCAGGAATCCTCGAAC 60.745 60.000 0.00 0.00 36.89 3.95
3605 3755 0.460284 CCACCAGGAATCCTCGAACG 60.460 60.000 0.00 0.00 36.89 3.95
3606 3756 0.246635 CACCAGGAATCCTCGAACGT 59.753 55.000 0.00 0.00 0.00 3.99
3607 3757 0.974383 ACCAGGAATCCTCGAACGTT 59.026 50.000 0.00 0.00 0.00 3.99
3608 3758 1.067071 ACCAGGAATCCTCGAACGTTC 60.067 52.381 18.47 18.47 0.00 3.95
3617 3767 4.465413 CGAACGTTCGTAGACCCC 57.535 61.111 35.92 5.20 45.09 4.95
3618 3768 1.512734 CGAACGTTCGTAGACCCCG 60.513 63.158 35.92 13.48 45.09 5.73
3619 3769 1.803117 GAACGTTCGTAGACCCCGC 60.803 63.158 13.36 0.00 34.32 6.13
3620 3770 3.286915 AACGTTCGTAGACCCCGCC 62.287 63.158 0.00 0.00 34.32 6.13
3621 3771 4.503314 CGTTCGTAGACCCCGCCC 62.503 72.222 0.00 0.00 34.32 6.13
3622 3772 3.384532 GTTCGTAGACCCCGCCCA 61.385 66.667 0.00 0.00 34.32 5.36
3623 3773 3.384532 TTCGTAGACCCCGCCCAC 61.385 66.667 0.00 0.00 34.32 4.61
3643 3793 4.021925 GACTGCCCGCCTTGGACT 62.022 66.667 0.00 0.00 42.00 3.85
3644 3794 2.606519 ACTGCCCGCCTTGGACTA 60.607 61.111 0.00 0.00 42.00 2.59
3645 3795 2.125106 CTGCCCGCCTTGGACTAC 60.125 66.667 0.00 0.00 42.00 2.73
3646 3796 4.077184 TGCCCGCCTTGGACTACG 62.077 66.667 0.00 0.00 42.00 3.51
3648 3798 4.832608 CCCGCCTTGGACTACGCC 62.833 72.222 0.00 0.00 42.00 5.68
3649 3799 3.771160 CCGCCTTGGACTACGCCT 61.771 66.667 0.00 0.00 42.00 5.52
3650 3800 2.264794 CGCCTTGGACTACGCCTT 59.735 61.111 0.00 0.00 0.00 4.35
3651 3801 2.100631 CGCCTTGGACTACGCCTTG 61.101 63.158 0.00 0.00 0.00 3.61
3652 3802 2.399356 GCCTTGGACTACGCCTTGC 61.399 63.158 0.00 0.00 0.00 4.01
3664 3814 3.168773 GCCTTGCGACCCTTATTCA 57.831 52.632 0.00 0.00 0.00 2.57
3665 3815 0.733150 GCCTTGCGACCCTTATTCAC 59.267 55.000 0.00 0.00 0.00 3.18
3666 3816 1.379527 CCTTGCGACCCTTATTCACC 58.620 55.000 0.00 0.00 0.00 4.02
3667 3817 1.379527 CTTGCGACCCTTATTCACCC 58.620 55.000 0.00 0.00 0.00 4.61
3668 3818 0.693622 TTGCGACCCTTATTCACCCA 59.306 50.000 0.00 0.00 0.00 4.51
3669 3819 0.251916 TGCGACCCTTATTCACCCAG 59.748 55.000 0.00 0.00 0.00 4.45
3670 3820 0.463833 GCGACCCTTATTCACCCAGG 60.464 60.000 0.00 0.00 0.00 4.45
3671 3821 1.200519 CGACCCTTATTCACCCAGGA 58.799 55.000 0.00 0.00 0.00 3.86
3672 3822 1.139058 CGACCCTTATTCACCCAGGAG 59.861 57.143 0.00 0.00 0.00 3.69
3673 3823 2.197465 GACCCTTATTCACCCAGGAGT 58.803 52.381 0.00 0.00 0.00 3.85
3674 3824 2.170817 GACCCTTATTCACCCAGGAGTC 59.829 54.545 0.00 0.00 0.00 3.36
3675 3825 1.490910 CCCTTATTCACCCAGGAGTCC 59.509 57.143 0.00 0.00 0.00 3.85
3676 3826 1.490910 CCTTATTCACCCAGGAGTCCC 59.509 57.143 5.25 0.00 0.00 4.46
3677 3827 2.482494 CTTATTCACCCAGGAGTCCCT 58.518 52.381 5.25 0.00 45.74 4.20
3678 3828 2.176247 TATTCACCCAGGAGTCCCTC 57.824 55.000 5.25 0.00 42.02 4.30
3686 3836 2.680352 GGAGTCCCTCCGCAGTCA 60.680 66.667 0.00 0.00 41.08 3.41
3687 3837 2.716017 GGAGTCCCTCCGCAGTCAG 61.716 68.421 0.00 0.00 41.08 3.51
3688 3838 1.679305 GAGTCCCTCCGCAGTCAGA 60.679 63.158 0.00 0.00 0.00 3.27
3689 3839 1.662438 GAGTCCCTCCGCAGTCAGAG 61.662 65.000 0.00 0.00 0.00 3.35
3690 3840 1.679305 GTCCCTCCGCAGTCAGAGA 60.679 63.158 0.00 0.00 31.43 3.10
3691 3841 1.679305 TCCCTCCGCAGTCAGAGAC 60.679 63.158 0.00 0.00 31.43 3.36
3692 3842 2.716017 CCCTCCGCAGTCAGAGACC 61.716 68.421 0.00 0.00 32.18 3.85
3693 3843 2.716017 CCTCCGCAGTCAGAGACCC 61.716 68.421 0.00 0.00 32.18 4.46
3694 3844 1.680651 CTCCGCAGTCAGAGACCCT 60.681 63.158 0.00 0.00 32.18 4.34
3695 3845 1.662438 CTCCGCAGTCAGAGACCCTC 61.662 65.000 0.00 0.00 32.18 4.30
3696 3846 2.716017 CCGCAGTCAGAGACCCTCC 61.716 68.421 0.00 0.00 32.18 4.30
3697 3847 1.979155 CGCAGTCAGAGACCCTCCA 60.979 63.158 0.00 0.00 32.18 3.86
3698 3848 1.594310 GCAGTCAGAGACCCTCCAC 59.406 63.158 0.00 0.00 32.18 4.02
3699 3849 1.188219 GCAGTCAGAGACCCTCCACA 61.188 60.000 0.00 0.00 32.18 4.17
3700 3850 0.605589 CAGTCAGAGACCCTCCACAC 59.394 60.000 0.00 0.00 32.18 3.82
3701 3851 0.543174 AGTCAGAGACCCTCCACACC 60.543 60.000 0.00 0.00 32.18 4.16
3702 3852 1.229209 TCAGAGACCCTCCACACCC 60.229 63.158 0.00 0.00 0.00 4.61
3703 3853 2.122954 AGAGACCCTCCACACCCC 59.877 66.667 0.00 0.00 0.00 4.95
3704 3854 2.122954 GAGACCCTCCACACCCCT 59.877 66.667 0.00 0.00 0.00 4.79
3705 3855 2.203998 AGACCCTCCACACCCCTG 60.204 66.667 0.00 0.00 0.00 4.45
3706 3856 2.529389 GACCCTCCACACCCCTGT 60.529 66.667 0.00 0.00 0.00 4.00
3707 3857 2.529389 ACCCTCCACACCCCTGTC 60.529 66.667 0.00 0.00 0.00 3.51
3708 3858 3.706373 CCCTCCACACCCCTGTCG 61.706 72.222 0.00 0.00 0.00 4.35
3709 3859 2.603473 CCTCCACACCCCTGTCGA 60.603 66.667 0.00 0.00 0.00 4.20
3710 3860 1.990060 CCTCCACACCCCTGTCGAT 60.990 63.158 0.00 0.00 0.00 3.59
3711 3861 1.219124 CTCCACACCCCTGTCGATG 59.781 63.158 0.00 0.00 0.00 3.84
3712 3862 2.436646 CCACACCCCTGTCGATGC 60.437 66.667 0.00 0.00 0.00 3.91
3713 3863 2.436646 CACACCCCTGTCGATGCC 60.437 66.667 0.00 0.00 0.00 4.40
3714 3864 4.082523 ACACCCCTGTCGATGCCG 62.083 66.667 0.00 0.00 37.07 5.69
3715 3865 4.082523 CACCCCTGTCGATGCCGT 62.083 66.667 0.00 0.00 37.05 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 7.987268 TGAACTATCGAGTTGCTTTATACTG 57.013 36.000 0.00 0.00 46.23 2.74
33 34 9.900710 CTATGAACTATCGAGTTGCTTTATACT 57.099 33.333 0.00 0.00 46.23 2.12
34 35 9.680315 ACTATGAACTATCGAGTTGCTTTATAC 57.320 33.333 0.00 0.00 46.23 1.47
123 132 4.203226 TGGAACTGTGCACTTTTCATGTA 58.797 39.130 23.76 10.60 0.00 2.29
125 134 3.635331 CTGGAACTGTGCACTTTTCATG 58.365 45.455 23.76 15.39 0.00 3.07
126 135 2.035066 GCTGGAACTGTGCACTTTTCAT 59.965 45.455 23.76 5.82 0.00 2.57
127 136 1.405105 GCTGGAACTGTGCACTTTTCA 59.595 47.619 23.76 17.88 0.00 2.69
128 137 1.269257 GGCTGGAACTGTGCACTTTTC 60.269 52.381 19.41 18.42 0.00 2.29
183 197 6.095440 CAGGTTGCAGCTACTTTATTACCATT 59.905 38.462 6.94 0.00 0.00 3.16
326 340 1.215647 GGTACTGGTCCGTGCTGAG 59.784 63.158 0.00 0.00 0.00 3.35
327 341 1.532078 TGGTACTGGTCCGTGCTGA 60.532 57.895 0.00 0.00 0.00 4.26
335 349 0.320697 AAGGAAGCGTGGTACTGGTC 59.679 55.000 0.00 0.00 0.00 4.02
372 393 1.202698 GCTAATTCTCGGTGGCCAGAT 60.203 52.381 5.11 0.00 0.00 2.90
382 405 3.259064 TGAAAACTCGGGCTAATTCTCG 58.741 45.455 0.00 0.00 0.00 4.04
396 419 1.329599 GCGTTCGACCACTTGAAAACT 59.670 47.619 0.00 0.00 0.00 2.66
397 420 1.596220 GGCGTTCGACCACTTGAAAAC 60.596 52.381 0.00 0.00 0.00 2.43
398 421 0.658897 GGCGTTCGACCACTTGAAAA 59.341 50.000 0.00 0.00 0.00 2.29
464 487 1.156645 GCGATCGAGCTGCAAATCCT 61.157 55.000 21.57 0.00 0.00 3.24
491 520 2.312398 CTTCTCCTCCTCGTCGTCGC 62.312 65.000 0.00 0.00 36.96 5.19
637 674 3.771160 TTTCCTCGCGCCTCCCTC 61.771 66.667 0.00 0.00 0.00 4.30
638 675 4.083862 GTTTCCTCGCGCCTCCCT 62.084 66.667 0.00 0.00 0.00 4.20
640 677 4.736896 ACGTTTCCTCGCGCCTCC 62.737 66.667 0.00 0.00 0.00 4.30
641 678 3.479269 CACGTTTCCTCGCGCCTC 61.479 66.667 0.00 0.00 0.00 4.70
682 729 4.253257 GTCGGTAGAGCGAGCCGG 62.253 72.222 3.71 0.00 44.97 6.13
683 730 4.253257 GGTCGGTAGAGCGAGCCG 62.253 72.222 19.46 5.85 46.12 5.52
884 944 4.580167 TCAAGTTGCATATCAATGGTAGCC 59.420 41.667 0.00 0.00 36.99 3.93
885 945 5.278169 CCTCAAGTTGCATATCAATGGTAGC 60.278 44.000 0.00 0.00 36.99 3.58
888 956 4.858850 TCCTCAAGTTGCATATCAATGGT 58.141 39.130 0.00 0.00 36.99 3.55
897 965 1.538047 ACGCATTCCTCAAGTTGCAT 58.462 45.000 0.00 0.00 34.80 3.96
901 969 0.238289 CGCAACGCATTCCTCAAGTT 59.762 50.000 0.00 0.00 0.00 2.66
966 1034 0.980423 AGAAAGCAGAGAGACCCACC 59.020 55.000 0.00 0.00 0.00 4.61
971 1039 3.324993 CAACCTCAGAAAGCAGAGAGAC 58.675 50.000 0.00 0.00 33.74 3.36
993 1061 0.106967 GAGGGACCTTCATCTTGGCC 60.107 60.000 0.00 0.00 0.00 5.36
997 1065 1.367848 AGGGAGAGGGACCTTCATCTT 59.632 52.381 6.36 0.00 31.68 2.40
1083 1151 2.852075 AAGAACTGGACGGCCCCA 60.852 61.111 3.83 0.00 34.52 4.96
1156 1229 4.458295 CAGCAACAGGATGAACATTTCTCT 59.542 41.667 0.00 0.00 39.69 3.10
1192 1265 2.571212 AGAACCGATGAACAAGCAACA 58.429 42.857 0.00 0.00 0.00 3.33
1218 1293 5.449588 CCTCAATGTCAAATCTCCATTTCCG 60.450 44.000 0.00 0.00 28.97 4.30
1247 1322 0.604578 GGCTTGCCTGCAGATTGAAA 59.395 50.000 17.39 0.00 34.04 2.69
1296 1371 0.543749 ATTGAAGAAGGCCCTCCTCG 59.456 55.000 0.00 0.00 43.40 4.63
1335 1410 4.455190 GCAGAAGATTATTGAGAGGATGGC 59.545 45.833 0.00 0.00 0.00 4.40
1336 1411 5.867330 AGCAGAAGATTATTGAGAGGATGG 58.133 41.667 0.00 0.00 0.00 3.51
1367 1445 2.607635 CGGGTGAACTAACCAATCATCG 59.392 50.000 0.00 0.00 42.47 3.84
1385 1463 0.888619 GCTTCTTTTCTTTCCCCGGG 59.111 55.000 15.80 15.80 0.00 5.73
1428 1509 3.794717 TGCATTGCACAACACAGAAATT 58.205 36.364 7.38 0.00 31.71 1.82
1458 1543 0.107017 CTTGTGGCTCCGGGATGAAT 60.107 55.000 0.00 0.00 0.00 2.57
1473 1558 0.104855 TGAAGTCGCAGCTCACTTGT 59.895 50.000 10.59 0.00 32.83 3.16
1476 1561 0.941463 CGTTGAAGTCGCAGCTCACT 60.941 55.000 0.00 0.00 0.00 3.41
1548 1633 0.884259 TGACGAACACCTCCGACGTA 60.884 55.000 0.00 0.00 37.32 3.57
2012 2097 0.107945 GCTCAGGTCCTTGTGGCTAG 60.108 60.000 0.00 0.00 0.00 3.42
2013 2098 0.835971 TGCTCAGGTCCTTGTGGCTA 60.836 55.000 0.00 0.00 0.00 3.93
2241 2326 2.804090 GACGCCGTCACCTCGAAC 60.804 66.667 13.23 0.00 32.09 3.95
2431 2522 4.415150 CAGCGGCACCACCTGGAT 62.415 66.667 0.00 0.00 38.94 3.41
2628 2719 0.461961 GCTTGCCGAGGTAGATGTCT 59.538 55.000 0.00 0.00 0.00 3.41
2721 2812 0.880278 GGCGTGTGTCATGTCAGTGT 60.880 55.000 0.00 0.00 0.00 3.55
2883 2991 3.251245 TCATACAACAAAAACGTCGCCAT 59.749 39.130 0.00 0.00 0.00 4.40
2922 3030 1.002366 CGGCTCCGAGAAAATGACTG 58.998 55.000 1.35 0.00 42.83 3.51
2947 3055 1.372997 CTTGCCAGACACGTACGCT 60.373 57.895 16.72 0.96 0.00 5.07
2988 3096 3.314080 TCACATGACGTTGTTTTCTTCCC 59.686 43.478 0.00 0.00 0.00 3.97
3156 3266 2.664851 GCGCGGCATATGCAGGTA 60.665 61.111 28.07 0.00 44.36 3.08
3185 3303 1.862602 GAAAAATCACCACGGCCGCT 61.863 55.000 28.58 10.12 0.00 5.52
3209 3328 2.202756 GAGACCCATCGGTGTCGC 60.203 66.667 0.00 0.00 44.88 5.19
3215 3334 1.373570 GCAAAGAAGAGACCCATCGG 58.626 55.000 0.00 0.00 0.00 4.18
3222 3341 1.960994 GCTCGCCGCAAAGAAGAGAC 61.961 60.000 0.00 0.00 38.92 3.36
3257 3405 8.713708 TGACCTTACCCTTGAATAAAAATGAA 57.286 30.769 0.00 0.00 0.00 2.57
3276 3426 1.003233 GTCCGGGTTGAAGATGACCTT 59.997 52.381 0.00 0.00 37.93 3.50
3280 3430 0.546747 AGGGTCCGGGTTGAAGATGA 60.547 55.000 0.00 0.00 0.00 2.92
3286 3436 0.401356 GGTTTTAGGGTCCGGGTTGA 59.599 55.000 0.00 0.00 0.00 3.18
3291 3441 2.437180 GGCGGTTTTAGGGTCCGG 60.437 66.667 0.00 0.00 43.77 5.14
3292 3442 2.437180 GGGCGGTTTTAGGGTCCG 60.437 66.667 0.00 0.00 45.94 4.79
3293 3443 2.437180 CGGGCGGTTTTAGGGTCC 60.437 66.667 0.00 0.00 0.00 4.46
3294 3444 3.129502 GCGGGCGGTTTTAGGGTC 61.130 66.667 0.00 0.00 0.00 4.46
3295 3445 3.494736 TTGCGGGCGGTTTTAGGGT 62.495 57.895 0.00 0.00 0.00 4.34
3296 3446 2.673687 TTGCGGGCGGTTTTAGGG 60.674 61.111 0.00 0.00 0.00 3.53
3297 3447 2.564458 GTTGCGGGCGGTTTTAGG 59.436 61.111 0.00 0.00 0.00 2.69
3298 3448 2.564458 GGTTGCGGGCGGTTTTAG 59.436 61.111 0.00 0.00 0.00 1.85
3299 3449 3.355455 CGGTTGCGGGCGGTTTTA 61.355 61.111 0.00 0.00 0.00 1.52
3305 3455 3.955101 TTCAAACGGTTGCGGGCG 61.955 61.111 8.75 0.00 34.50 6.13
3306 3456 2.354188 GTTCAAACGGTTGCGGGC 60.354 61.111 8.75 0.00 34.50 6.13
3307 3457 2.333581 GGTTCAAACGGTTGCGGG 59.666 61.111 8.75 0.00 34.50 6.13
3308 3458 2.051703 CGGTTCAAACGGTTGCGG 60.052 61.111 8.75 0.00 34.50 5.69
3309 3459 1.652930 CACGGTTCAAACGGTTGCG 60.653 57.895 8.75 9.29 39.97 4.85
3310 3460 0.863957 CACACGGTTCAAACGGTTGC 60.864 55.000 8.75 0.00 39.97 4.17
3311 3461 0.248296 CCACACGGTTCAAACGGTTG 60.248 55.000 6.93 6.93 39.97 3.77
3312 3462 0.677414 ACCACACGGTTCAAACGGTT 60.677 50.000 0.00 0.00 46.31 4.44
3313 3463 1.078285 ACCACACGGTTCAAACGGT 60.078 52.632 0.00 1.33 46.31 4.83
3314 3464 3.816388 ACCACACGGTTCAAACGG 58.184 55.556 0.00 0.66 46.31 4.44
3323 3473 4.698304 ACAAAACATATCCTAACCACACGG 59.302 41.667 0.00 0.00 38.77 4.94
3324 3474 5.410132 TGACAAAACATATCCTAACCACACG 59.590 40.000 0.00 0.00 0.00 4.49
3325 3475 6.811253 TGACAAAACATATCCTAACCACAC 57.189 37.500 0.00 0.00 0.00 3.82
3326 3476 6.601613 GGATGACAAAACATATCCTAACCACA 59.398 38.462 0.00 0.00 36.88 4.17
3327 3477 6.601613 TGGATGACAAAACATATCCTAACCAC 59.398 38.462 0.00 0.00 39.80 4.16
3328 3478 6.726379 TGGATGACAAAACATATCCTAACCA 58.274 36.000 0.00 0.00 39.80 3.67
3329 3479 7.639113 TTGGATGACAAAACATATCCTAACC 57.361 36.000 0.00 0.00 39.80 2.85
3330 3480 8.686334 ACATTGGATGACAAAACATATCCTAAC 58.314 33.333 0.00 0.00 43.46 2.34
3331 3481 8.685427 CACATTGGATGACAAAACATATCCTAA 58.315 33.333 0.00 0.00 43.46 2.69
3332 3482 7.285172 CCACATTGGATGACAAAACATATCCTA 59.715 37.037 0.00 0.00 43.46 2.94
3333 3483 6.097270 CCACATTGGATGACAAAACATATCCT 59.903 38.462 0.00 0.00 43.46 3.24
3334 3484 6.127366 ACCACATTGGATGACAAAACATATCC 60.127 38.462 0.00 0.00 43.46 2.59
3335 3485 6.866480 ACCACATTGGATGACAAAACATATC 58.134 36.000 0.00 0.00 43.46 1.63
3336 3486 6.436847 TGACCACATTGGATGACAAAACATAT 59.563 34.615 0.00 0.00 43.46 1.78
3337 3487 5.772169 TGACCACATTGGATGACAAAACATA 59.228 36.000 0.00 0.00 43.46 2.29
3338 3488 4.588106 TGACCACATTGGATGACAAAACAT 59.412 37.500 0.00 0.00 43.46 2.71
3339 3489 3.956848 TGACCACATTGGATGACAAAACA 59.043 39.130 0.00 0.00 43.46 2.83
3340 3490 4.582701 TGACCACATTGGATGACAAAAC 57.417 40.909 0.00 0.00 43.46 2.43
3341 3491 4.588106 ACATGACCACATTGGATGACAAAA 59.412 37.500 0.00 0.00 43.46 2.44
3342 3492 4.151121 ACATGACCACATTGGATGACAAA 58.849 39.130 0.00 0.00 43.46 2.83
3343 3493 3.765381 ACATGACCACATTGGATGACAA 58.235 40.909 0.00 0.00 40.96 3.18
3344 3494 3.438216 ACATGACCACATTGGATGACA 57.562 42.857 0.00 0.00 40.96 3.58
3345 3495 4.460382 AGAAACATGACCACATTGGATGAC 59.540 41.667 0.00 0.00 40.96 3.06
3346 3496 4.460034 CAGAAACATGACCACATTGGATGA 59.540 41.667 0.00 0.00 40.96 2.92
3347 3497 4.740268 CAGAAACATGACCACATTGGATG 58.260 43.478 0.00 0.00 40.96 3.51
3348 3498 3.194116 GCAGAAACATGACCACATTGGAT 59.806 43.478 0.00 0.00 40.96 3.41
3349 3499 2.557924 GCAGAAACATGACCACATTGGA 59.442 45.455 0.00 0.00 40.96 3.53
3350 3500 2.559668 AGCAGAAACATGACCACATTGG 59.440 45.455 0.00 0.00 45.02 3.16
3351 3501 3.571571 CAGCAGAAACATGACCACATTG 58.428 45.455 0.00 0.00 34.15 2.82
3352 3502 2.559668 CCAGCAGAAACATGACCACATT 59.440 45.455 0.00 0.00 34.15 2.71
3353 3503 2.165167 CCAGCAGAAACATGACCACAT 58.835 47.619 0.00 0.00 37.19 3.21
3354 3504 1.608055 CCAGCAGAAACATGACCACA 58.392 50.000 0.00 0.00 0.00 4.17
3355 3505 0.242017 GCCAGCAGAAACATGACCAC 59.758 55.000 0.00 0.00 0.00 4.16
3356 3506 0.895100 GGCCAGCAGAAACATGACCA 60.895 55.000 0.00 0.00 0.00 4.02
3357 3507 1.885871 GGCCAGCAGAAACATGACC 59.114 57.895 0.00 0.00 0.00 4.02
3358 3508 1.503542 CGGCCAGCAGAAACATGAC 59.496 57.895 2.24 0.00 0.00 3.06
3359 3509 1.675310 CCGGCCAGCAGAAACATGA 60.675 57.895 2.24 0.00 0.00 3.07
3360 3510 1.926511 GACCGGCCAGCAGAAACATG 61.927 60.000 0.00 0.00 0.00 3.21
3361 3511 1.675641 GACCGGCCAGCAGAAACAT 60.676 57.895 0.00 0.00 0.00 2.71
3362 3512 2.281484 GACCGGCCAGCAGAAACA 60.281 61.111 0.00 0.00 0.00 2.83
3363 3513 3.056328 GGACCGGCCAGCAGAAAC 61.056 66.667 0.00 0.00 36.34 2.78
3364 3514 3.565214 TGGACCGGCCAGCAGAAA 61.565 61.111 12.86 0.00 43.33 2.52
3373 3523 2.841160 AAAAAGCGTGTGGACCGGC 61.841 57.895 0.00 0.00 0.00 6.13
3374 3524 3.427670 AAAAAGCGTGTGGACCGG 58.572 55.556 0.00 0.00 0.00 5.28
3391 3541 2.106566 TGCCTTCTGGTTGCTGAAAAA 58.893 42.857 0.00 0.00 35.27 1.94
3392 3542 1.774110 TGCCTTCTGGTTGCTGAAAA 58.226 45.000 0.00 0.00 35.27 2.29
3393 3543 1.774110 TTGCCTTCTGGTTGCTGAAA 58.226 45.000 0.00 0.00 35.27 2.69
3394 3544 1.408702 GTTTGCCTTCTGGTTGCTGAA 59.591 47.619 0.00 0.00 35.27 3.02
3395 3545 1.032014 GTTTGCCTTCTGGTTGCTGA 58.968 50.000 0.00 0.00 35.27 4.26
3396 3546 1.000938 GAGTTTGCCTTCTGGTTGCTG 60.001 52.381 0.00 0.00 35.27 4.41
3397 3547 1.322442 GAGTTTGCCTTCTGGTTGCT 58.678 50.000 0.00 0.00 35.27 3.91
3398 3548 0.040067 CGAGTTTGCCTTCTGGTTGC 60.040 55.000 0.00 0.00 35.27 4.17
3399 3549 0.593128 CCGAGTTTGCCTTCTGGTTG 59.407 55.000 0.00 0.00 35.27 3.77
3400 3550 0.537371 CCCGAGTTTGCCTTCTGGTT 60.537 55.000 0.00 0.00 35.27 3.67
3401 3551 1.073199 CCCGAGTTTGCCTTCTGGT 59.927 57.895 0.00 0.00 35.27 4.00
3402 3552 1.675641 CCCCGAGTTTGCCTTCTGG 60.676 63.158 0.00 0.00 0.00 3.86
3403 3553 0.250727 TTCCCCGAGTTTGCCTTCTG 60.251 55.000 0.00 0.00 0.00 3.02
3404 3554 0.036875 CTTCCCCGAGTTTGCCTTCT 59.963 55.000 0.00 0.00 0.00 2.85
3405 3555 0.960861 CCTTCCCCGAGTTTGCCTTC 60.961 60.000 0.00 0.00 0.00 3.46
3406 3556 1.074951 CCTTCCCCGAGTTTGCCTT 59.925 57.895 0.00 0.00 0.00 4.35
3407 3557 2.757077 CCTTCCCCGAGTTTGCCT 59.243 61.111 0.00 0.00 0.00 4.75
3408 3558 2.361230 CCCTTCCCCGAGTTTGCC 60.361 66.667 0.00 0.00 0.00 4.52
3409 3559 2.361230 CCCCTTCCCCGAGTTTGC 60.361 66.667 0.00 0.00 0.00 3.68
3410 3560 2.198304 CTCCCCCTTCCCCGAGTTTG 62.198 65.000 0.00 0.00 0.00 2.93
3411 3561 1.923909 CTCCCCCTTCCCCGAGTTT 60.924 63.158 0.00 0.00 0.00 2.66
3412 3562 2.285442 CTCCCCCTTCCCCGAGTT 60.285 66.667 0.00 0.00 0.00 3.01
3413 3563 4.416601 CCTCCCCCTTCCCCGAGT 62.417 72.222 0.00 0.00 0.00 4.18
3419 3569 2.947217 AAAGCCCCTCCCCCTTCC 60.947 66.667 0.00 0.00 0.00 3.46
3420 3570 2.360585 CAAAGCCCCTCCCCCTTC 59.639 66.667 0.00 0.00 0.00 3.46
3421 3571 3.997952 GCAAAGCCCCTCCCCCTT 61.998 66.667 0.00 0.00 0.00 3.95
3423 3573 4.766632 CTGCAAAGCCCCTCCCCC 62.767 72.222 0.00 0.00 0.00 5.40
3424 3574 4.766632 CCTGCAAAGCCCCTCCCC 62.767 72.222 0.00 0.00 0.00 4.81
3425 3575 3.651980 CTCCTGCAAAGCCCCTCCC 62.652 68.421 0.00 0.00 0.00 4.30
3426 3576 2.044551 CTCCTGCAAAGCCCCTCC 60.045 66.667 0.00 0.00 0.00 4.30
3427 3577 1.676967 CACTCCTGCAAAGCCCCTC 60.677 63.158 0.00 0.00 0.00 4.30
3428 3578 2.437897 CACTCCTGCAAAGCCCCT 59.562 61.111 0.00 0.00 0.00 4.79
3429 3579 2.116125 ACACTCCTGCAAAGCCCC 59.884 61.111 0.00 0.00 0.00 5.80
3430 3580 2.270986 CCACACTCCTGCAAAGCCC 61.271 63.158 0.00 0.00 0.00 5.19
3431 3581 1.228245 TCCACACTCCTGCAAAGCC 60.228 57.895 0.00 0.00 0.00 4.35
3432 3582 0.819259 TGTCCACACTCCTGCAAAGC 60.819 55.000 0.00 0.00 0.00 3.51
3433 3583 0.947244 GTGTCCACACTCCTGCAAAG 59.053 55.000 2.41 0.00 43.25 2.77
3434 3584 0.465460 GGTGTCCACACTCCTGCAAA 60.465 55.000 9.65 0.00 45.73 3.68
3435 3585 1.148273 GGTGTCCACACTCCTGCAA 59.852 57.895 9.65 0.00 45.73 4.08
3436 3586 1.631071 TTGGTGTCCACACTCCTGCA 61.631 55.000 9.65 0.00 45.73 4.41
3437 3587 0.250901 ATTGGTGTCCACACTCCTGC 60.251 55.000 9.65 0.00 45.73 4.85
3438 3588 1.072173 TGATTGGTGTCCACACTCCTG 59.928 52.381 9.65 0.00 45.73 3.86
3439 3589 1.072331 GTGATTGGTGTCCACACTCCT 59.928 52.381 9.65 0.00 45.73 3.69
3440 3590 1.523758 GTGATTGGTGTCCACACTCC 58.476 55.000 9.65 0.00 45.73 3.85
3441 3591 1.148310 CGTGATTGGTGTCCACACTC 58.852 55.000 9.65 0.85 45.73 3.51
3442 3592 0.468226 ACGTGATTGGTGTCCACACT 59.532 50.000 9.65 0.00 45.73 3.55
3443 3593 2.066262 CTACGTGATTGGTGTCCACAC 58.934 52.381 0.00 0.85 45.72 3.82
3444 3594 1.001520 CCTACGTGATTGGTGTCCACA 59.998 52.381 0.00 0.00 30.78 4.17
3445 3595 1.274167 TCCTACGTGATTGGTGTCCAC 59.726 52.381 0.00 0.00 30.78 4.02
3446 3596 1.274167 GTCCTACGTGATTGGTGTCCA 59.726 52.381 0.00 0.00 0.00 4.02
3447 3597 1.549170 AGTCCTACGTGATTGGTGTCC 59.451 52.381 0.00 0.00 0.00 4.02
3448 3598 2.416972 GGAGTCCTACGTGATTGGTGTC 60.417 54.545 0.41 0.00 0.00 3.67
3449 3599 1.549170 GGAGTCCTACGTGATTGGTGT 59.451 52.381 0.41 0.00 0.00 4.16
3450 3600 1.469251 CGGAGTCCTACGTGATTGGTG 60.469 57.143 7.77 0.00 30.94 4.17
3451 3601 0.815734 CGGAGTCCTACGTGATTGGT 59.184 55.000 7.77 0.00 30.94 3.67
3452 3602 1.100510 TCGGAGTCCTACGTGATTGG 58.899 55.000 7.77 0.00 38.28 3.16
3453 3603 1.471287 TGTCGGAGTCCTACGTGATTG 59.529 52.381 7.77 0.00 38.28 2.67
3454 3604 1.471684 GTGTCGGAGTCCTACGTGATT 59.528 52.381 7.77 0.00 38.28 2.57
3455 3605 1.093159 GTGTCGGAGTCCTACGTGAT 58.907 55.000 7.77 0.00 38.28 3.06
3456 3606 0.957395 GGTGTCGGAGTCCTACGTGA 60.957 60.000 7.77 0.00 38.28 4.35
3457 3607 1.505353 GGTGTCGGAGTCCTACGTG 59.495 63.158 7.77 0.00 38.28 4.49
3458 3608 1.676967 GGGTGTCGGAGTCCTACGT 60.677 63.158 7.77 0.00 38.28 3.57
3459 3609 2.413142 GGGGTGTCGGAGTCCTACG 61.413 68.421 7.77 0.00 38.52 3.51
3460 3610 1.304713 TGGGGTGTCGGAGTCCTAC 60.305 63.158 7.77 7.30 0.00 3.18
3461 3611 1.304713 GTGGGGTGTCGGAGTCCTA 60.305 63.158 7.77 0.00 0.00 2.94
3462 3612 2.603776 GTGGGGTGTCGGAGTCCT 60.604 66.667 7.77 0.00 0.00 3.85
3463 3613 2.603776 AGTGGGGTGTCGGAGTCC 60.604 66.667 0.00 0.00 0.00 3.85
3464 3614 1.469335 TTCAGTGGGGTGTCGGAGTC 61.469 60.000 0.00 0.00 0.00 3.36
3465 3615 1.052124 TTTCAGTGGGGTGTCGGAGT 61.052 55.000 0.00 0.00 0.00 3.85
3466 3616 0.324943 ATTTCAGTGGGGTGTCGGAG 59.675 55.000 0.00 0.00 0.00 4.63
3467 3617 0.323629 GATTTCAGTGGGGTGTCGGA 59.676 55.000 0.00 0.00 0.00 4.55
3468 3618 0.676782 GGATTTCAGTGGGGTGTCGG 60.677 60.000 0.00 0.00 0.00 4.79
3469 3619 0.676782 GGGATTTCAGTGGGGTGTCG 60.677 60.000 0.00 0.00 0.00 4.35
3470 3620 0.323451 GGGGATTTCAGTGGGGTGTC 60.323 60.000 0.00 0.00 0.00 3.67
3471 3621 1.774300 GGGGATTTCAGTGGGGTGT 59.226 57.895 0.00 0.00 0.00 4.16
3472 3622 1.000359 GGGGGATTTCAGTGGGGTG 60.000 63.158 0.00 0.00 0.00 4.61
3473 3623 0.780090 AAGGGGGATTTCAGTGGGGT 60.780 55.000 0.00 0.00 0.00 4.95
3474 3624 0.033109 GAAGGGGGATTTCAGTGGGG 60.033 60.000 0.00 0.00 0.00 4.96
3475 3625 0.033109 GGAAGGGGGATTTCAGTGGG 60.033 60.000 0.00 0.00 0.00 4.61
3476 3626 0.394352 CGGAAGGGGGATTTCAGTGG 60.394 60.000 0.00 0.00 0.00 4.00
3477 3627 3.175133 CGGAAGGGGGATTTCAGTG 57.825 57.895 0.00 0.00 0.00 3.66
3490 3640 3.498777 GTGGAAGAAAAGAAGACCGGAAG 59.501 47.826 9.46 0.00 0.00 3.46
3491 3641 3.135895 AGTGGAAGAAAAGAAGACCGGAA 59.864 43.478 9.46 0.00 0.00 4.30
3492 3642 2.704065 AGTGGAAGAAAAGAAGACCGGA 59.296 45.455 9.46 0.00 0.00 5.14
3493 3643 3.067833 GAGTGGAAGAAAAGAAGACCGG 58.932 50.000 0.00 0.00 0.00 5.28
3494 3644 3.067833 GGAGTGGAAGAAAAGAAGACCG 58.932 50.000 0.00 0.00 0.00 4.79
3495 3645 3.815962 GTGGAGTGGAAGAAAAGAAGACC 59.184 47.826 0.00 0.00 0.00 3.85
3496 3646 3.815962 GGTGGAGTGGAAGAAAAGAAGAC 59.184 47.826 0.00 0.00 0.00 3.01
3497 3647 3.181443 GGGTGGAGTGGAAGAAAAGAAGA 60.181 47.826 0.00 0.00 0.00 2.87
3498 3648 3.149981 GGGTGGAGTGGAAGAAAAGAAG 58.850 50.000 0.00 0.00 0.00 2.85
3499 3649 2.512056 TGGGTGGAGTGGAAGAAAAGAA 59.488 45.455 0.00 0.00 0.00 2.52
3500 3650 2.131854 TGGGTGGAGTGGAAGAAAAGA 58.868 47.619 0.00 0.00 0.00 2.52
3501 3651 2.656947 TGGGTGGAGTGGAAGAAAAG 57.343 50.000 0.00 0.00 0.00 2.27
3502 3652 2.875296 CATGGGTGGAGTGGAAGAAAA 58.125 47.619 0.00 0.00 0.00 2.29
3503 3653 1.547675 GCATGGGTGGAGTGGAAGAAA 60.548 52.381 0.00 0.00 0.00 2.52
3504 3654 0.038166 GCATGGGTGGAGTGGAAGAA 59.962 55.000 0.00 0.00 0.00 2.52
3505 3655 0.842030 AGCATGGGTGGAGTGGAAGA 60.842 55.000 0.00 0.00 0.00 2.87
3506 3656 0.393537 GAGCATGGGTGGAGTGGAAG 60.394 60.000 0.00 0.00 0.00 3.46
3507 3657 1.685224 GAGCATGGGTGGAGTGGAA 59.315 57.895 0.00 0.00 0.00 3.53
3508 3658 2.300967 GGAGCATGGGTGGAGTGGA 61.301 63.158 0.00 0.00 0.00 4.02
3509 3659 2.262774 GAGGAGCATGGGTGGAGTGG 62.263 65.000 0.00 0.00 0.00 4.00
3510 3660 1.222936 GAGGAGCATGGGTGGAGTG 59.777 63.158 0.00 0.00 0.00 3.51
3511 3661 1.997874 GGAGGAGCATGGGTGGAGT 60.998 63.158 0.00 0.00 0.00 3.85
3512 3662 2.750657 GGGAGGAGCATGGGTGGAG 61.751 68.421 0.00 0.00 0.00 3.86
3513 3663 2.692368 GGGAGGAGCATGGGTGGA 60.692 66.667 0.00 0.00 0.00 4.02
3514 3664 2.276309 GAAGGGAGGAGCATGGGTGG 62.276 65.000 0.00 0.00 0.00 4.61
3515 3665 1.225704 GAAGGGAGGAGCATGGGTG 59.774 63.158 0.00 0.00 0.00 4.61
3516 3666 2.003548 GGAAGGGAGGAGCATGGGT 61.004 63.158 0.00 0.00 0.00 4.51
3517 3667 1.284841 AAGGAAGGGAGGAGCATGGG 61.285 60.000 0.00 0.00 0.00 4.00
3518 3668 0.627986 AAAGGAAGGGAGGAGCATGG 59.372 55.000 0.00 0.00 0.00 3.66
3519 3669 1.283029 TGAAAGGAAGGGAGGAGCATG 59.717 52.381 0.00 0.00 0.00 4.06
3520 3670 1.673767 TGAAAGGAAGGGAGGAGCAT 58.326 50.000 0.00 0.00 0.00 3.79
3521 3671 1.561542 GATGAAAGGAAGGGAGGAGCA 59.438 52.381 0.00 0.00 0.00 4.26
3522 3672 1.843206 AGATGAAAGGAAGGGAGGAGC 59.157 52.381 0.00 0.00 0.00 4.70
3523 3673 2.421248 GCAGATGAAAGGAAGGGAGGAG 60.421 54.545 0.00 0.00 0.00 3.69
3524 3674 1.561542 GCAGATGAAAGGAAGGGAGGA 59.438 52.381 0.00 0.00 0.00 3.71
3525 3675 1.283029 TGCAGATGAAAGGAAGGGAGG 59.717 52.381 0.00 0.00 0.00 4.30
3526 3676 2.363683 GTGCAGATGAAAGGAAGGGAG 58.636 52.381 0.00 0.00 0.00 4.30
3527 3677 1.004745 GGTGCAGATGAAAGGAAGGGA 59.995 52.381 0.00 0.00 0.00 4.20
3528 3678 1.467920 GGTGCAGATGAAAGGAAGGG 58.532 55.000 0.00 0.00 0.00 3.95
3529 3679 1.467920 GGGTGCAGATGAAAGGAAGG 58.532 55.000 0.00 0.00 0.00 3.46
3530 3680 1.005215 AGGGGTGCAGATGAAAGGAAG 59.995 52.381 0.00 0.00 0.00 3.46
3531 3681 1.004745 GAGGGGTGCAGATGAAAGGAA 59.995 52.381 0.00 0.00 0.00 3.36
3532 3682 0.620556 GAGGGGTGCAGATGAAAGGA 59.379 55.000 0.00 0.00 0.00 3.36
3533 3683 0.745845 CGAGGGGTGCAGATGAAAGG 60.746 60.000 0.00 0.00 0.00 3.11
3534 3684 1.372087 GCGAGGGGTGCAGATGAAAG 61.372 60.000 0.00 0.00 0.00 2.62
3535 3685 1.377202 GCGAGGGGTGCAGATGAAA 60.377 57.895 0.00 0.00 0.00 2.69
3536 3686 2.268920 GCGAGGGGTGCAGATGAA 59.731 61.111 0.00 0.00 0.00 2.57
3537 3687 3.785859 GGCGAGGGGTGCAGATGA 61.786 66.667 0.00 0.00 0.00 2.92
3560 3710 5.504806 CCGAAGAGGTACAACGATGACGT 62.505 52.174 0.00 0.00 44.62 4.34
3561 3711 2.174764 CGAAGAGGTACAACGATGACG 58.825 52.381 0.00 0.00 45.75 4.35
3562 3712 2.163010 TCCGAAGAGGTACAACGATGAC 59.837 50.000 0.00 0.00 41.99 3.06
3563 3713 2.163010 GTCCGAAGAGGTACAACGATGA 59.837 50.000 0.00 0.00 41.99 2.92
3564 3714 2.527100 GTCCGAAGAGGTACAACGATG 58.473 52.381 0.00 0.00 41.99 3.84
3565 3715 1.131883 CGTCCGAAGAGGTACAACGAT 59.868 52.381 0.00 0.00 38.37 3.73
3566 3716 0.518636 CGTCCGAAGAGGTACAACGA 59.481 55.000 0.00 0.00 38.37 3.85
3567 3717 1.069378 GCGTCCGAAGAGGTACAACG 61.069 60.000 0.00 0.00 41.99 4.10
3568 3718 0.735287 GGCGTCCGAAGAGGTACAAC 60.735 60.000 0.00 0.00 41.99 3.32
3569 3719 1.180456 TGGCGTCCGAAGAGGTACAA 61.180 55.000 0.00 0.00 41.99 2.41
3570 3720 1.604308 TGGCGTCCGAAGAGGTACA 60.604 57.895 0.00 0.00 41.99 2.90
3571 3721 1.153881 GTGGCGTCCGAAGAGGTAC 60.154 63.158 0.00 0.00 41.99 3.34
3572 3722 2.345760 GGTGGCGTCCGAAGAGGTA 61.346 63.158 0.00 0.00 41.99 3.08
3573 3723 3.692406 GGTGGCGTCCGAAGAGGT 61.692 66.667 0.00 0.00 41.99 3.85
3574 3724 3.649277 CTGGTGGCGTCCGAAGAGG 62.649 68.421 0.00 0.00 42.97 3.69
3575 3725 2.125912 CTGGTGGCGTCCGAAGAG 60.126 66.667 0.00 0.00 0.00 2.85
3576 3726 3.691342 CCTGGTGGCGTCCGAAGA 61.691 66.667 0.00 0.00 0.00 2.87
3577 3727 2.521958 ATTCCTGGTGGCGTCCGAAG 62.522 60.000 0.00 0.00 0.00 3.79
3578 3728 2.515996 GATTCCTGGTGGCGTCCGAA 62.516 60.000 0.00 0.00 0.00 4.30
3579 3729 3.000819 ATTCCTGGTGGCGTCCGA 61.001 61.111 0.00 0.00 0.00 4.55
3580 3730 2.511600 GATTCCTGGTGGCGTCCG 60.512 66.667 0.00 0.00 0.00 4.79
3581 3731 2.124695 GGATTCCTGGTGGCGTCC 60.125 66.667 0.00 0.00 32.35 4.79
3582 3732 1.153349 GAGGATTCCTGGTGGCGTC 60.153 63.158 10.74 0.00 31.76 5.19
3583 3733 2.990479 GAGGATTCCTGGTGGCGT 59.010 61.111 10.74 0.00 31.76 5.68
3584 3734 2.202932 CGAGGATTCCTGGTGGCG 60.203 66.667 10.74 2.98 31.76 5.69
3585 3735 0.744771 GTTCGAGGATTCCTGGTGGC 60.745 60.000 10.74 0.59 31.76 5.01
3586 3736 0.460284 CGTTCGAGGATTCCTGGTGG 60.460 60.000 10.74 0.00 31.76 4.61
3587 3737 0.246635 ACGTTCGAGGATTCCTGGTG 59.753 55.000 10.74 6.41 31.76 4.17
3588 3738 0.974383 AACGTTCGAGGATTCCTGGT 59.026 50.000 10.74 0.00 31.76 4.00
3589 3739 1.641577 GAACGTTCGAGGATTCCTGG 58.358 55.000 13.36 9.40 31.76 4.45
3601 3751 1.803117 GCGGGGTCTACGAACGTTC 60.803 63.158 18.47 18.47 0.00 3.95
3602 3752 2.259511 GCGGGGTCTACGAACGTT 59.740 61.111 0.00 0.00 0.00 3.99
3603 3753 3.752339 GGCGGGGTCTACGAACGT 61.752 66.667 5.03 5.03 0.00 3.99
3604 3754 4.503314 GGGCGGGGTCTACGAACG 62.503 72.222 0.00 0.00 0.00 3.95
3605 3755 3.384532 TGGGCGGGGTCTACGAAC 61.385 66.667 0.00 0.00 0.00 3.95
3606 3756 3.384532 GTGGGCGGGGTCTACGAA 61.385 66.667 0.00 0.00 0.00 3.85
3626 3776 2.656069 TAGTCCAAGGCGGGCAGTC 61.656 63.158 3.78 0.00 44.49 3.51
3627 3777 2.606519 TAGTCCAAGGCGGGCAGT 60.607 61.111 3.78 0.00 44.49 4.40
3628 3778 2.125106 GTAGTCCAAGGCGGGCAG 60.125 66.667 3.78 0.00 44.49 4.85
3629 3779 4.077184 CGTAGTCCAAGGCGGGCA 62.077 66.667 3.78 0.00 44.49 5.36
3631 3781 4.832608 GGCGTAGTCCAAGGCGGG 62.833 72.222 0.00 0.00 34.36 6.13
3632 3782 3.310860 AAGGCGTAGTCCAAGGCGG 62.311 63.158 0.00 0.00 36.28 6.13
3633 3783 2.100631 CAAGGCGTAGTCCAAGGCG 61.101 63.158 0.00 0.00 36.28 5.52
3634 3784 2.399356 GCAAGGCGTAGTCCAAGGC 61.399 63.158 0.00 0.00 0.00 4.35
3635 3785 3.890674 GCAAGGCGTAGTCCAAGG 58.109 61.111 0.00 0.00 0.00 3.61
3646 3796 0.733150 GTGAATAAGGGTCGCAAGGC 59.267 55.000 0.00 0.00 45.19 4.35
3647 3797 1.379527 GGTGAATAAGGGTCGCAAGG 58.620 55.000 0.00 0.00 38.47 3.61
3648 3798 1.339631 TGGGTGAATAAGGGTCGCAAG 60.340 52.381 0.00 0.00 0.00 4.01
3649 3799 0.693622 TGGGTGAATAAGGGTCGCAA 59.306 50.000 0.00 0.00 0.00 4.85
3650 3800 0.251916 CTGGGTGAATAAGGGTCGCA 59.748 55.000 0.00 0.00 0.00 5.10
3651 3801 0.463833 CCTGGGTGAATAAGGGTCGC 60.464 60.000 0.00 0.00 0.00 5.19
3652 3802 1.139058 CTCCTGGGTGAATAAGGGTCG 59.861 57.143 0.00 0.00 0.00 4.79
3653 3803 2.170817 GACTCCTGGGTGAATAAGGGTC 59.829 54.545 0.00 0.00 0.00 4.46
3654 3804 2.197465 GACTCCTGGGTGAATAAGGGT 58.803 52.381 0.00 0.00 0.00 4.34
3655 3805 1.490910 GGACTCCTGGGTGAATAAGGG 59.509 57.143 0.00 0.00 0.00 3.95
3656 3806 1.490910 GGGACTCCTGGGTGAATAAGG 59.509 57.143 0.00 0.00 0.00 2.69
3657 3807 2.482494 AGGGACTCCTGGGTGAATAAG 58.518 52.381 0.00 0.00 42.98 1.73
3658 3808 2.661176 AGGGACTCCTGGGTGAATAA 57.339 50.000 0.00 0.00 42.98 1.40
3671 3821 2.143575 TCTCTGACTGCGGAGGGACT 62.144 60.000 9.36 0.00 45.72 3.85
3672 3822 1.679305 TCTCTGACTGCGGAGGGAC 60.679 63.158 9.36 0.00 45.72 4.46
3673 3823 1.679305 GTCTCTGACTGCGGAGGGA 60.679 63.158 9.36 2.69 45.72 4.20
3674 3824 2.716017 GGTCTCTGACTGCGGAGGG 61.716 68.421 9.36 0.00 45.72 4.30
3675 3825 2.716017 GGGTCTCTGACTGCGGAGG 61.716 68.421 9.36 0.00 45.72 4.30
3676 3826 1.662438 GAGGGTCTCTGACTGCGGAG 61.662 65.000 0.85 0.85 46.81 4.63
3677 3827 1.679305 GAGGGTCTCTGACTGCGGA 60.679 63.158 0.00 0.00 32.47 5.54
3678 3828 2.716017 GGAGGGTCTCTGACTGCGG 61.716 68.421 0.00 0.00 32.47 5.69
3679 3829 1.979155 TGGAGGGTCTCTGACTGCG 60.979 63.158 0.00 0.00 32.47 5.18
3680 3830 1.188219 TGTGGAGGGTCTCTGACTGC 61.188 60.000 0.00 0.00 32.47 4.40
3681 3831 0.605589 GTGTGGAGGGTCTCTGACTG 59.394 60.000 0.00 0.00 32.47 3.51
3682 3832 0.543174 GGTGTGGAGGGTCTCTGACT 60.543 60.000 0.00 0.00 32.47 3.41
3683 3833 1.545706 GGGTGTGGAGGGTCTCTGAC 61.546 65.000 0.00 0.00 0.00 3.51
3684 3834 1.229209 GGGTGTGGAGGGTCTCTGA 60.229 63.158 0.00 0.00 0.00 3.27
3685 3835 2.294078 GGGGTGTGGAGGGTCTCTG 61.294 68.421 0.00 0.00 0.00 3.35
3686 3836 2.122954 GGGGTGTGGAGGGTCTCT 59.877 66.667 0.00 0.00 0.00 3.10
3687 3837 2.122954 AGGGGTGTGGAGGGTCTC 59.877 66.667 0.00 0.00 0.00 3.36
3688 3838 2.203998 CAGGGGTGTGGAGGGTCT 60.204 66.667 0.00 0.00 0.00 3.85
3689 3839 2.529389 ACAGGGGTGTGGAGGGTC 60.529 66.667 0.00 0.00 0.00 4.46
3690 3840 2.529389 GACAGGGGTGTGGAGGGT 60.529 66.667 0.00 0.00 0.00 4.34
3691 3841 3.706373 CGACAGGGGTGTGGAGGG 61.706 72.222 0.00 0.00 0.00 4.30
3692 3842 1.990060 ATCGACAGGGGTGTGGAGG 60.990 63.158 0.00 0.00 30.49 4.30
3693 3843 1.219124 CATCGACAGGGGTGTGGAG 59.781 63.158 0.00 0.00 30.49 3.86
3694 3844 2.954684 GCATCGACAGGGGTGTGGA 61.955 63.158 0.00 0.00 0.00 4.02
3695 3845 2.436646 GCATCGACAGGGGTGTGG 60.437 66.667 0.00 0.00 0.00 4.17
3696 3846 2.436646 GGCATCGACAGGGGTGTG 60.437 66.667 0.00 0.00 0.00 3.82
3697 3847 4.082523 CGGCATCGACAGGGGTGT 62.083 66.667 0.00 0.00 39.00 4.16
3698 3848 4.082523 ACGGCATCGACAGGGGTG 62.083 66.667 0.00 0.00 40.11 4.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.