Multiple sequence alignment - TraesCS7B01G310800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G310800 chr7B 100.000 2468 0 0 1 2468 556334337 556331870 0.000000e+00 4558.0
1 TraesCS7B01G310800 chr7B 80.169 590 75 22 1209 1761 555656084 555656668 1.060000e-108 403.0
2 TraesCS7B01G310800 chr7B 77.712 507 69 18 633 1103 555655487 555655985 1.120000e-68 270.0
3 TraesCS7B01G310800 chr7B 86.567 134 12 4 1781 1908 445020253 445020386 2.560000e-30 143.0
4 TraesCS7B01G310800 chr7A 94.147 1589 59 13 193 1776 602659497 602657938 0.000000e+00 2388.0
5 TraesCS7B01G310800 chr7A 79.630 594 76 28 1209 1761 602099338 602099927 3.850000e-103 385.0
6 TraesCS7B01G310800 chr7A 95.977 174 6 1 1 173 705675645 705675472 5.200000e-72 281.0
7 TraesCS7B01G310800 chr7A 76.726 507 74 20 633 1103 602098773 602099271 2.450000e-60 243.0
8 TraesCS7B01G310800 chr7A 86.036 222 26 4 2109 2326 602657514 602657294 1.480000e-57 233.0
9 TraesCS7B01G310800 chr7D 91.008 1101 45 21 710 1776 522154981 522153901 0.000000e+00 1435.0
10 TraesCS7B01G310800 chr7D 92.990 485 21 4 191 674 522155449 522154977 0.000000e+00 695.0
11 TraesCS7B01G310800 chr7D 88.705 363 37 3 2109 2468 522153471 522153110 8.100000e-120 440.0
12 TraesCS7B01G310800 chr7D 82.927 369 39 8 1209 1553 521764040 521764408 6.630000e-81 311.0
13 TraesCS7B01G310800 chr7D 77.381 504 72 20 633 1103 521763441 521763935 6.770000e-66 261.0
14 TraesCS7B01G310800 chr2B 98.851 174 1 1 1 173 115849693 115849520 2.380000e-80 309.0
15 TraesCS7B01G310800 chr2B 90.816 98 8 1 1812 1908 643293679 643293776 1.990000e-26 130.0
16 TraesCS7B01G310800 chr3B 98.276 174 2 1 1 173 136796573 136796400 1.110000e-78 303.0
17 TraesCS7B01G310800 chr3B 95.977 174 6 1 1 173 226965284 226965457 5.200000e-72 281.0
18 TraesCS7B01G310800 chr3B 93.548 155 6 4 1900 2054 434642319 434642469 6.870000e-56 228.0
19 TraesCS7B01G310800 chr2D 97.126 174 4 1 1 173 647561134 647560961 2.400000e-75 292.0
20 TraesCS7B01G310800 chr2D 90.426 94 9 0 1813 1906 47196106 47196199 9.270000e-25 124.0
21 TraesCS7B01G310800 chr2D 90.426 94 9 0 1813 1906 141243930 141243837 9.270000e-25 124.0
22 TraesCS7B01G310800 chr1B 96.552 174 5 1 1 173 470422319 470422146 1.120000e-73 287.0
23 TraesCS7B01G310800 chr1B 97.297 37 0 1 1502 1538 57430689 57430654 7.370000e-06 62.1
24 TraesCS7B01G310800 chr4B 95.402 174 7 1 1 173 122553903 122554076 2.420000e-70 276.0
25 TraesCS7B01G310800 chr4B 84.831 178 22 3 1904 2078 414256189 414256364 9.070000e-40 174.0
26 TraesCS7B01G310800 chr4B 85.401 137 10 4 1782 1908 189811900 189812036 1.540000e-27 134.0
27 TraesCS7B01G310800 chr4B 85.185 135 13 1 1781 1908 450474606 450474740 5.540000e-27 132.0
28 TraesCS7B01G310800 chr2A 95.402 174 7 1 1 173 772828790 772828963 2.420000e-70 276.0
29 TraesCS7B01G310800 chr1A 94.253 174 9 1 1 173 441745928 441746101 5.230000e-67 265.0
30 TraesCS7B01G310800 chr1A 84.783 184 20 4 1906 2083 13965135 13965316 7.010000e-41 178.0
31 TraesCS7B01G310800 chr1A 74.733 281 48 17 1209 1471 36768108 36767833 1.210000e-18 104.0
32 TraesCS7B01G310800 chr6B 88.701 177 20 0 1907 2083 521472393 521472569 1.490000e-52 217.0
33 TraesCS7B01G310800 chr6B 87.861 173 17 4 1907 2079 43790452 43790620 1.500000e-47 200.0
34 TraesCS7B01G310800 chr5A 87.500 176 20 2 1907 2082 437917964 437917791 4.160000e-48 202.0
35 TraesCS7B01G310800 chr5A 85.475 179 23 3 1906 2083 666165237 666165413 1.510000e-42 183.0
36 TraesCS7B01G310800 chr6A 87.861 173 16 5 1907 2079 115407497 115407664 5.380000e-47 198.0
37 TraesCS7B01G310800 chr4A 87.283 173 20 2 1907 2079 13771102 13770932 1.940000e-46 196.0
38 TraesCS7B01G310800 chr4A 85.135 148 15 4 1767 1908 537242768 537242622 7.110000e-31 145.0
39 TraesCS7B01G310800 chr5D 82.796 186 27 4 2287 2468 334417349 334417533 7.060000e-36 161.0
40 TraesCS7B01G310800 chr1D 73.790 496 71 34 994 1467 37517706 37517248 9.200000e-30 141.0
41 TraesCS7B01G310800 chr1D 90.426 94 9 0 1813 1906 268039430 268039337 9.270000e-25 124.0
42 TraesCS7B01G310800 chr1D 90.426 94 9 0 1813 1906 314809293 314809386 9.270000e-25 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G310800 chr7B 556331870 556334337 2467 True 4558.000000 4558 100.0000 1 2468 1 chr7B.!!$R1 2467
1 TraesCS7B01G310800 chr7B 555655487 555656668 1181 False 336.500000 403 78.9405 633 1761 2 chr7B.!!$F2 1128
2 TraesCS7B01G310800 chr7A 602657294 602659497 2203 True 1310.500000 2388 90.0915 193 2326 2 chr7A.!!$R2 2133
3 TraesCS7B01G310800 chr7A 602098773 602099927 1154 False 314.000000 385 78.1780 633 1761 2 chr7A.!!$F1 1128
4 TraesCS7B01G310800 chr7D 522153110 522155449 2339 True 856.666667 1435 90.9010 191 2468 3 chr7D.!!$R1 2277
5 TraesCS7B01G310800 chr7D 521763441 521764408 967 False 286.000000 311 80.1540 633 1553 2 chr7D.!!$F1 920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
94 95 0.179111 CTTGAGGCGCTTGACGGATA 60.179 55.0 7.64 0.0 43.93 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2019 2315 0.106719 AAACACACACACCTGAGGGG 60.107 55.0 0.0 0.0 41.89 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.559785 CAGAGGCCACATGTGTTCC 58.440 57.895 23.79 22.02 0.00 3.62
19 20 0.962356 CAGAGGCCACATGTGTTCCC 60.962 60.000 23.79 19.24 0.00 3.97
20 21 1.136329 AGAGGCCACATGTGTTCCCT 61.136 55.000 23.79 23.07 0.00 4.20
21 22 0.678048 GAGGCCACATGTGTTCCCTC 60.678 60.000 27.42 27.42 34.07 4.30
22 23 1.678970 GGCCACATGTGTTCCCTCC 60.679 63.158 23.79 10.92 0.00 4.30
23 24 1.074775 GCCACATGTGTTCCCTCCA 59.925 57.895 23.79 0.00 0.00 3.86
24 25 0.962356 GCCACATGTGTTCCCTCCAG 60.962 60.000 23.79 6.82 0.00 3.86
25 26 0.322816 CCACATGTGTTCCCTCCAGG 60.323 60.000 23.79 1.04 0.00 4.45
37 38 3.011517 TCCAGGGAGGGAGCTTGC 61.012 66.667 0.00 0.00 38.24 4.01
38 39 4.120755 CCAGGGAGGGAGCTTGCC 62.121 72.222 0.00 0.00 0.00 4.52
45 46 3.070576 GGGAGCTTGCCCGCAATT 61.071 61.111 1.98 0.00 38.58 2.32
46 47 2.649129 GGGAGCTTGCCCGCAATTT 61.649 57.895 1.98 0.00 38.58 1.82
47 48 1.293179 GGAGCTTGCCCGCAATTTT 59.707 52.632 1.98 0.00 35.20 1.82
48 49 0.530288 GGAGCTTGCCCGCAATTTTA 59.470 50.000 1.98 0.00 35.20 1.52
49 50 1.136891 GGAGCTTGCCCGCAATTTTAT 59.863 47.619 1.98 0.00 35.20 1.40
50 51 2.463876 GAGCTTGCCCGCAATTTTATC 58.536 47.619 1.98 0.00 35.20 1.75
51 52 2.099756 GAGCTTGCCCGCAATTTTATCT 59.900 45.455 1.98 0.00 35.20 1.98
52 53 2.497273 AGCTTGCCCGCAATTTTATCTT 59.503 40.909 1.98 0.00 35.20 2.40
53 54 2.860136 GCTTGCCCGCAATTTTATCTTC 59.140 45.455 1.98 0.00 35.20 2.87
54 55 3.675775 GCTTGCCCGCAATTTTATCTTCA 60.676 43.478 1.98 0.00 35.20 3.02
55 56 4.493547 CTTGCCCGCAATTTTATCTTCAA 58.506 39.130 1.98 0.00 35.20 2.69
56 57 4.108699 TGCCCGCAATTTTATCTTCAAG 57.891 40.909 0.00 0.00 0.00 3.02
57 58 3.119173 TGCCCGCAATTTTATCTTCAAGG 60.119 43.478 0.00 0.00 0.00 3.61
58 59 3.119137 GCCCGCAATTTTATCTTCAAGGT 60.119 43.478 0.00 0.00 0.00 3.50
59 60 4.097286 GCCCGCAATTTTATCTTCAAGGTA 59.903 41.667 0.00 0.00 0.00 3.08
60 61 5.578776 CCCGCAATTTTATCTTCAAGGTAC 58.421 41.667 0.00 0.00 0.00 3.34
62 63 6.258160 CCGCAATTTTATCTTCAAGGTACTG 58.742 40.000 0.00 0.00 40.86 2.74
63 64 6.258160 CGCAATTTTATCTTCAAGGTACTGG 58.742 40.000 0.00 0.00 40.86 4.00
64 65 6.093495 CGCAATTTTATCTTCAAGGTACTGGA 59.907 38.462 0.00 0.00 40.86 3.86
79 80 2.099141 CTGGAAGTGGATTCGCTTGA 57.901 50.000 4.02 0.00 43.07 3.02
80 81 2.005451 CTGGAAGTGGATTCGCTTGAG 58.995 52.381 4.02 0.00 43.07 3.02
81 82 1.339055 TGGAAGTGGATTCGCTTGAGG 60.339 52.381 4.02 0.00 43.07 3.86
82 83 0.729690 GAAGTGGATTCGCTTGAGGC 59.270 55.000 4.02 0.00 43.07 4.70
91 92 3.793144 GCTTGAGGCGCTTGACGG 61.793 66.667 7.64 0.00 43.93 4.79
92 93 2.048222 CTTGAGGCGCTTGACGGA 60.048 61.111 7.64 0.00 43.93 4.69
93 94 1.448540 CTTGAGGCGCTTGACGGAT 60.449 57.895 7.64 0.00 43.93 4.18
94 95 0.179111 CTTGAGGCGCTTGACGGATA 60.179 55.000 7.64 0.00 43.93 2.59
95 96 0.248012 TTGAGGCGCTTGACGGATAA 59.752 50.000 7.64 0.00 43.93 1.75
96 97 0.459585 TGAGGCGCTTGACGGATAAC 60.460 55.000 7.64 0.00 43.93 1.89
106 107 4.946038 CGGATAACGGAAGCCCAA 57.054 55.556 0.00 0.00 39.42 4.12
107 108 2.690326 CGGATAACGGAAGCCCAAG 58.310 57.895 0.00 0.00 39.42 3.61
108 109 0.814010 CGGATAACGGAAGCCCAAGG 60.814 60.000 0.00 0.00 39.42 3.61
109 110 0.255033 GGATAACGGAAGCCCAAGGT 59.745 55.000 0.00 0.00 0.00 3.50
110 111 1.487558 GGATAACGGAAGCCCAAGGTA 59.512 52.381 0.00 0.00 0.00 3.08
111 112 2.484947 GGATAACGGAAGCCCAAGGTAG 60.485 54.545 0.00 0.00 0.00 3.18
112 113 0.251073 TAACGGAAGCCCAAGGTAGC 59.749 55.000 0.00 0.00 0.00 3.58
113 114 2.511600 CGGAAGCCCAAGGTAGCG 60.512 66.667 0.00 0.00 0.00 4.26
114 115 2.824489 GGAAGCCCAAGGTAGCGC 60.824 66.667 0.00 0.00 0.00 5.92
115 116 2.046314 GAAGCCCAAGGTAGCGCA 60.046 61.111 11.47 0.00 0.00 6.09
116 117 1.452108 GAAGCCCAAGGTAGCGCAT 60.452 57.895 11.47 0.00 0.00 4.73
117 118 1.440145 GAAGCCCAAGGTAGCGCATC 61.440 60.000 11.47 0.90 0.00 3.91
118 119 3.272334 GCCCAAGGTAGCGCATCG 61.272 66.667 11.47 0.00 0.00 3.84
119 120 2.588877 CCCAAGGTAGCGCATCGG 60.589 66.667 11.47 0.19 0.00 4.18
120 121 2.588877 CCAAGGTAGCGCATCGGG 60.589 66.667 11.47 0.00 0.00 5.14
121 122 2.499205 CAAGGTAGCGCATCGGGA 59.501 61.111 11.47 0.00 0.00 5.14
122 123 1.153449 CAAGGTAGCGCATCGGGAA 60.153 57.895 11.47 0.00 0.00 3.97
123 124 1.153429 AAGGTAGCGCATCGGGAAC 60.153 57.895 11.47 0.00 0.00 3.62
147 148 3.427425 CGCACCGCCGGAAAATCA 61.427 61.111 11.71 0.00 0.00 2.57
148 149 2.760159 CGCACCGCCGGAAAATCAT 61.760 57.895 11.71 0.00 0.00 2.45
149 150 1.226660 GCACCGCCGGAAAATCATG 60.227 57.895 11.71 0.00 0.00 3.07
150 151 1.653094 GCACCGCCGGAAAATCATGA 61.653 55.000 11.71 0.00 0.00 3.07
151 152 0.808125 CACCGCCGGAAAATCATGAA 59.192 50.000 11.71 0.00 0.00 2.57
152 153 1.094785 ACCGCCGGAAAATCATGAAG 58.905 50.000 11.71 0.00 0.00 3.02
153 154 1.339631 ACCGCCGGAAAATCATGAAGA 60.340 47.619 11.71 0.00 0.00 2.87
154 155 1.742831 CCGCCGGAAAATCATGAAGAA 59.257 47.619 5.05 0.00 0.00 2.52
155 156 2.477863 CCGCCGGAAAATCATGAAGAAC 60.478 50.000 5.05 0.00 0.00 3.01
156 157 2.161410 CGCCGGAAAATCATGAAGAACA 59.839 45.455 5.05 0.00 0.00 3.18
157 158 3.181497 CGCCGGAAAATCATGAAGAACAT 60.181 43.478 5.05 0.00 40.17 2.71
158 159 4.354587 GCCGGAAAATCATGAAGAACATC 58.645 43.478 5.05 0.00 37.07 3.06
159 160 4.591202 CCGGAAAATCATGAAGAACATCG 58.409 43.478 0.00 0.00 37.07 3.84
160 161 4.094887 CCGGAAAATCATGAAGAACATCGT 59.905 41.667 0.00 0.00 37.07 3.73
161 162 5.258622 CGGAAAATCATGAAGAACATCGTC 58.741 41.667 0.00 0.00 37.07 4.20
162 163 5.163864 CGGAAAATCATGAAGAACATCGTCA 60.164 40.000 0.00 0.00 39.08 4.35
163 164 6.611381 GGAAAATCATGAAGAACATCGTCAA 58.389 36.000 0.00 0.00 38.31 3.18
164 165 6.744537 GGAAAATCATGAAGAACATCGTCAAG 59.255 38.462 0.00 0.00 38.31 3.02
165 166 5.808042 AATCATGAAGAACATCGTCAAGG 57.192 39.130 0.00 0.00 38.31 3.61
166 167 4.271696 TCATGAAGAACATCGTCAAGGT 57.728 40.909 0.00 0.00 38.31 3.50
167 168 4.641396 TCATGAAGAACATCGTCAAGGTT 58.359 39.130 0.00 0.00 38.31 3.50
168 169 4.452114 TCATGAAGAACATCGTCAAGGTTG 59.548 41.667 0.00 0.00 38.31 3.77
169 170 4.066646 TGAAGAACATCGTCAAGGTTGA 57.933 40.909 0.00 0.00 32.18 3.18
170 171 4.641396 TGAAGAACATCGTCAAGGTTGAT 58.359 39.130 0.00 0.00 39.73 2.57
171 172 4.452114 TGAAGAACATCGTCAAGGTTGATG 59.548 41.667 5.68 5.68 43.79 3.07
174 175 2.532531 CATCGTCAAGGTTGATGTGC 57.467 50.000 10.91 0.00 43.12 4.57
175 176 2.079158 CATCGTCAAGGTTGATGTGCT 58.921 47.619 10.91 0.00 43.12 4.40
176 177 2.254546 TCGTCAAGGTTGATGTGCTT 57.745 45.000 10.91 0.00 43.12 3.91
177 178 3.394674 TCGTCAAGGTTGATGTGCTTA 57.605 42.857 10.91 0.00 43.12 3.09
178 179 3.734463 TCGTCAAGGTTGATGTGCTTAA 58.266 40.909 10.91 0.00 43.12 1.85
179 180 3.496884 TCGTCAAGGTTGATGTGCTTAAC 59.503 43.478 10.91 0.00 43.12 2.01
180 181 3.364964 CGTCAAGGTTGATGTGCTTAACC 60.365 47.826 4.07 0.00 43.22 2.85
184 185 2.790433 GGTTGATGTGCTTAACCTGGA 58.210 47.619 0.00 0.00 40.47 3.86
185 186 3.356290 GGTTGATGTGCTTAACCTGGAT 58.644 45.455 0.00 0.00 40.47 3.41
186 187 4.523083 GGTTGATGTGCTTAACCTGGATA 58.477 43.478 0.00 0.00 40.47 2.59
187 188 4.947388 GGTTGATGTGCTTAACCTGGATAA 59.053 41.667 0.00 0.00 40.47 1.75
188 189 5.066505 GGTTGATGTGCTTAACCTGGATAAG 59.933 44.000 16.86 16.86 40.47 1.73
189 190 5.435686 TGATGTGCTTAACCTGGATAAGT 57.564 39.130 20.61 5.26 33.77 2.24
297 301 5.907197 TCTTCTGAAGAAAATGTCACGTC 57.093 39.130 17.32 0.00 33.83 4.34
434 438 9.875675 CACTAACAAAAAGAAAAGAGATGAGAG 57.124 33.333 0.00 0.00 0.00 3.20
453 457 6.927416 TGAGAGAACCAATTTCAATGGAATG 58.073 36.000 0.00 0.00 40.56 2.67
457 461 9.430399 AGAGAACCAATTTCAATGGAATGATAT 57.570 29.630 0.00 0.00 40.56 1.63
466 470 5.637127 TCAATGGAATGATATGCATCCTGT 58.363 37.500 0.19 0.00 35.78 4.00
475 479 1.597742 ATGCATCCTGTGTATTCGCC 58.402 50.000 0.00 0.00 27.64 5.54
769 777 0.678048 GGTGCTGCTAACCAGGAAGG 60.678 60.000 0.00 0.00 43.93 3.46
828 836 3.297134 AAAGGAGTGAGAAAGGCACAA 57.703 42.857 0.00 0.00 38.70 3.33
891 901 5.296780 CAGAAAGAACAAAGCTGAACTGGTA 59.703 40.000 0.00 0.00 0.00 3.25
1049 1104 2.376518 TCATCCTCCTCACCTTTGCTTT 59.623 45.455 0.00 0.00 0.00 3.51
1135 1190 1.620739 GCCTCATCTCCAGGTGCAGA 61.621 60.000 0.00 0.00 32.98 4.26
1181 1238 5.843969 TGTACATCATCCCCTATTTGCTCTA 59.156 40.000 0.00 0.00 0.00 2.43
1481 1625 6.102663 TCAGCTTCTAAAGTACTGATCTTGC 58.897 40.000 0.00 0.00 32.65 4.01
1505 1651 2.553172 CGGGTGGTACTGCTAGTATCTC 59.447 54.545 7.71 4.85 33.06 2.75
1541 1689 6.980397 CAGTTTCAGAAATTGTTTGCCTAACT 59.020 34.615 9.69 0.00 37.64 2.24
1557 1705 4.110482 CCTAACTTTTGTCGGTATCGGAG 58.890 47.826 0.00 0.00 36.95 4.63
1558 1706 3.672767 AACTTTTGTCGGTATCGGAGT 57.327 42.857 0.00 0.00 36.95 3.85
1559 1707 4.789012 AACTTTTGTCGGTATCGGAGTA 57.211 40.909 0.00 0.00 36.95 2.59
1560 1708 4.996788 ACTTTTGTCGGTATCGGAGTAT 57.003 40.909 0.00 0.00 36.95 2.12
1561 1709 4.929781 ACTTTTGTCGGTATCGGAGTATC 58.070 43.478 0.00 0.00 36.95 2.24
1562 1710 3.614159 TTTGTCGGTATCGGAGTATCG 57.386 47.619 0.00 0.00 34.37 2.92
1563 1711 1.516161 TGTCGGTATCGGAGTATCGG 58.484 55.000 0.00 0.00 34.37 4.18
1564 1712 0.167689 GTCGGTATCGGAGTATCGGC 59.832 60.000 0.00 0.00 35.13 5.54
1683 1853 8.848474 ATATAAGTATGTACACCAAGCAATCC 57.152 34.615 0.00 0.00 0.00 3.01
1691 1861 6.418946 TGTACACCAAGCAATCCACAATATA 58.581 36.000 0.00 0.00 0.00 0.86
1716 1887 5.273944 GCGGATAAAATGGAATTCAGACAC 58.726 41.667 7.93 0.00 33.67 3.67
1761 1932 2.948115 TCCTGGGCATCCATGTATTTG 58.052 47.619 0.00 0.00 43.11 2.32
1762 1933 1.342174 CCTGGGCATCCATGTATTTGC 59.658 52.381 0.00 0.00 43.11 3.68
1763 1934 2.033372 CTGGGCATCCATGTATTTGCA 58.967 47.619 8.16 0.00 43.11 4.08
1764 1935 2.033372 TGGGCATCCATGTATTTGCAG 58.967 47.619 8.16 0.00 38.32 4.41
1766 1937 2.035066 GGGCATCCATGTATTTGCAGTC 59.965 50.000 8.16 0.00 36.82 3.51
1767 1938 2.954318 GGCATCCATGTATTTGCAGTCT 59.046 45.455 8.16 0.00 36.82 3.24
1768 1939 3.243301 GGCATCCATGTATTTGCAGTCTG 60.243 47.826 0.00 0.00 36.82 3.51
1769 1940 3.794475 GCATCCATGTATTTGCAGTCTGC 60.794 47.826 18.32 18.32 45.29 4.26
1783 1954 4.060205 GCAGTCTGCAATTTTCAAACCAT 58.940 39.130 20.16 0.00 44.26 3.55
1785 1956 5.007921 GCAGTCTGCAATTTTCAAACCATTT 59.992 36.000 20.16 0.00 44.26 2.32
1786 1957 6.652245 CAGTCTGCAATTTTCAAACCATTTC 58.348 36.000 0.00 0.00 0.00 2.17
1787 1958 5.759763 AGTCTGCAATTTTCAAACCATTTCC 59.240 36.000 0.00 0.00 0.00 3.13
1788 1959 5.526846 GTCTGCAATTTTCAAACCATTTCCA 59.473 36.000 0.00 0.00 0.00 3.53
1789 1960 6.205270 GTCTGCAATTTTCAAACCATTTCCAT 59.795 34.615 0.00 0.00 0.00 3.41
1791 1962 6.736123 TGCAATTTTCAAACCATTTCCATTG 58.264 32.000 0.00 0.00 0.00 2.82
1792 1963 6.151004 GCAATTTTCAAACCATTTCCATTGG 58.849 36.000 0.00 0.00 40.26 3.16
1793 1964 5.963176 ATTTTCAAACCATTTCCATTGGC 57.037 34.783 0.00 0.00 37.81 4.52
1794 1965 4.428294 TTTCAAACCATTTCCATTGGCA 57.572 36.364 0.00 0.00 37.81 4.92
1804 2010 6.016108 ACCATTTCCATTGGCATTTTTCAAAG 60.016 34.615 0.00 0.00 37.81 2.77
1806 2012 6.616774 TTTCCATTGGCATTTTTCAAAGTC 57.383 33.333 0.00 0.00 0.00 3.01
1807 2013 5.549742 TCCATTGGCATTTTTCAAAGTCT 57.450 34.783 0.00 0.00 0.00 3.24
1809 2015 6.690530 TCCATTGGCATTTTTCAAAGTCTAG 58.309 36.000 0.00 0.00 0.00 2.43
1811 2017 6.587608 CCATTGGCATTTTTCAAAGTCTAGAC 59.412 38.462 15.41 15.41 0.00 2.59
1829 2035 8.470002 AGTCTAGACTTTCAAAGTTTGCAAAAT 58.530 29.630 20.00 10.45 43.03 1.82
1853 2059 4.880886 GCAGTGGCATTTTTCAAAGTTT 57.119 36.364 0.00 0.00 40.72 2.66
1854 2060 4.590226 GCAGTGGCATTTTTCAAAGTTTG 58.410 39.130 9.44 9.44 40.72 2.93
1855 2061 4.332268 GCAGTGGCATTTTTCAAAGTTTGA 59.668 37.500 14.35 14.35 40.72 2.69
1866 2072 4.775440 TCAAAGTTTGAAAATTGCAGCG 57.225 36.364 15.92 0.00 36.59 5.18
1867 2073 3.555139 TCAAAGTTTGAAAATTGCAGCGG 59.445 39.130 15.92 0.00 36.59 5.52
1868 2074 1.501169 AGTTTGAAAATTGCAGCGGC 58.499 45.000 0.31 0.31 41.68 6.53
1869 2075 0.161446 GTTTGAAAATTGCAGCGGCG 59.839 50.000 0.51 0.51 45.35 6.46
1870 2076 0.249238 TTTGAAAATTGCAGCGGCGT 60.249 45.000 9.37 0.00 45.35 5.68
1872 2078 0.249238 TGAAAATTGCAGCGGCGTTT 60.249 45.000 9.37 5.31 45.35 3.60
1873 2079 0.434628 GAAAATTGCAGCGGCGTTTC 59.565 50.000 9.37 13.58 45.35 2.78
1875 2081 2.123988 AAATTGCAGCGGCGTTTCGA 62.124 50.000 9.37 0.00 45.35 3.71
1880 2086 1.693083 GCAGCGGCGTTTCGAGTAAT 61.693 55.000 9.37 0.00 0.00 1.89
1882 2088 1.138047 AGCGGCGTTTCGAGTAATCG 61.138 55.000 9.37 6.17 34.17 3.34
1884 2090 0.564767 CGGCGTTTCGAGTAATCGTC 59.435 55.000 12.79 4.13 33.69 4.20
1885 2091 1.621107 GGCGTTTCGAGTAATCGTCA 58.379 50.000 12.79 0.00 35.47 4.35
1886 2092 1.582502 GGCGTTTCGAGTAATCGTCAG 59.417 52.381 12.79 4.39 35.47 3.51
1887 2093 2.512885 GCGTTTCGAGTAATCGTCAGA 58.487 47.619 12.79 0.00 33.69 3.27
1888 2094 2.912967 GCGTTTCGAGTAATCGTCAGAA 59.087 45.455 12.79 0.00 33.69 3.02
1889 2095 3.546670 GCGTTTCGAGTAATCGTCAGAAT 59.453 43.478 12.79 0.00 33.69 2.40
1890 2096 4.031426 GCGTTTCGAGTAATCGTCAGAATT 59.969 41.667 12.79 0.00 33.69 2.17
1891 2097 5.705390 CGTTTCGAGTAATCGTCAGAATTC 58.295 41.667 12.79 0.00 0.00 2.17
1892 2098 5.550275 CGTTTCGAGTAATCGTCAGAATTCG 60.550 44.000 12.79 4.48 0.00 3.34
1896 2102 4.434909 CGAGTAATCGTCAGAATTCGAGTG 59.565 45.833 4.05 0.00 39.38 3.51
1897 2103 4.673441 AGTAATCGTCAGAATTCGAGTGG 58.327 43.478 0.00 0.00 39.38 4.00
1898 2104 1.927895 ATCGTCAGAATTCGAGTGGC 58.072 50.000 0.00 0.00 39.38 5.01
1899 2105 0.601057 TCGTCAGAATTCGAGTGGCA 59.399 50.000 0.00 0.00 0.00 4.92
1901 2107 2.002586 CGTCAGAATTCGAGTGGCATT 58.997 47.619 0.00 0.00 0.00 3.56
1902 2108 2.416547 CGTCAGAATTCGAGTGGCATTT 59.583 45.455 0.00 0.00 0.00 2.32
1904 2110 4.271049 CGTCAGAATTCGAGTGGCATTTAT 59.729 41.667 0.00 0.00 0.00 1.40
1905 2111 5.557136 CGTCAGAATTCGAGTGGCATTTATC 60.557 44.000 0.00 0.00 0.00 1.75
1906 2112 4.816385 TCAGAATTCGAGTGGCATTTATCC 59.184 41.667 0.00 0.00 0.00 2.59
1909 2115 3.627395 TTCGAGTGGCATTTATCCAGT 57.373 42.857 0.00 0.00 39.82 4.00
1911 2117 1.942657 CGAGTGGCATTTATCCAGTGG 59.057 52.381 1.40 1.40 37.38 4.00
1912 2118 1.678101 GAGTGGCATTTATCCAGTGGC 59.322 52.381 3.51 0.00 37.38 5.01
1914 2120 0.751277 TGGCATTTATCCAGTGGCGG 60.751 55.000 3.51 0.00 40.86 6.13
1915 2121 0.465460 GGCATTTATCCAGTGGCGGA 60.465 55.000 3.51 0.00 40.07 5.54
1916 2122 0.947244 GCATTTATCCAGTGGCGGAG 59.053 55.000 3.51 0.00 38.83 4.63
1933 2139 1.910722 AGCTATGTGTGCTCCTGGG 59.089 57.895 0.00 0.00 35.67 4.45
1935 2141 1.915078 GCTATGTGTGCTCCTGGGGT 61.915 60.000 0.00 0.00 0.00 4.95
1963 2169 4.863415 CCCCCAGCCTTAGCAAAA 57.137 55.556 0.00 0.00 43.56 2.44
1964 2170 3.065462 CCCCCAGCCTTAGCAAAAA 57.935 52.632 0.00 0.00 43.56 1.94
1965 2171 0.897621 CCCCCAGCCTTAGCAAAAAG 59.102 55.000 0.00 0.00 43.56 2.27
1966 2172 1.632589 CCCCAGCCTTAGCAAAAAGT 58.367 50.000 0.00 0.00 43.56 2.66
1967 2173 2.556559 CCCCCAGCCTTAGCAAAAAGTA 60.557 50.000 0.00 0.00 43.56 2.24
1969 2175 3.131046 CCCCAGCCTTAGCAAAAAGTATG 59.869 47.826 0.00 0.00 43.56 2.39
1970 2176 4.016444 CCCAGCCTTAGCAAAAAGTATGA 58.984 43.478 0.00 0.00 43.56 2.15
1972 2178 5.393461 CCCAGCCTTAGCAAAAAGTATGAAG 60.393 44.000 0.00 0.00 43.56 3.02
1973 2179 5.393461 CCAGCCTTAGCAAAAAGTATGAAGG 60.393 44.000 0.00 0.00 43.56 3.46
2011 2307 8.926092 AGGGTTTAGATGAGGATAAATTTAGC 57.074 34.615 4.86 4.86 0.00 3.09
2012 2308 8.502738 AGGGTTTAGATGAGGATAAATTTAGCA 58.497 33.333 14.91 5.74 0.00 3.49
2018 2314 7.664758 AGATGAGGATAAATTTAGCATTTGGC 58.335 34.615 14.91 0.00 45.30 4.52
2019 2315 6.160576 TGAGGATAAATTTAGCATTTGGCC 57.839 37.500 14.91 0.00 46.50 5.36
2020 2316 5.070313 TGAGGATAAATTTAGCATTTGGCCC 59.930 40.000 14.91 0.00 46.50 5.80
2021 2317 4.347876 AGGATAAATTTAGCATTTGGCCCC 59.652 41.667 14.91 0.00 46.50 5.80
2022 2318 4.504864 GGATAAATTTAGCATTTGGCCCCC 60.505 45.833 14.91 0.00 46.50 5.40
2024 2320 1.793414 ATTTAGCATTTGGCCCCCTC 58.207 50.000 0.00 0.00 46.50 4.30
2025 2321 0.411452 TTTAGCATTTGGCCCCCTCA 59.589 50.000 0.00 0.00 46.50 3.86
2026 2322 0.033208 TTAGCATTTGGCCCCCTCAG 60.033 55.000 0.00 0.00 46.50 3.35
2027 2323 1.936767 TAGCATTTGGCCCCCTCAGG 61.937 60.000 0.00 0.00 46.50 3.86
2028 2324 2.772924 CATTTGGCCCCCTCAGGT 59.227 61.111 0.00 0.00 0.00 4.00
2029 2325 1.683365 CATTTGGCCCCCTCAGGTG 60.683 63.158 0.00 0.00 0.00 4.00
2030 2326 2.169810 ATTTGGCCCCCTCAGGTGT 61.170 57.895 0.00 0.00 0.00 4.16
2031 2327 2.445492 ATTTGGCCCCCTCAGGTGTG 62.445 60.000 0.00 0.00 0.00 3.82
2032 2328 4.918360 TGGCCCCCTCAGGTGTGT 62.918 66.667 0.00 0.00 0.00 3.72
2034 2330 3.570212 GCCCCCTCAGGTGTGTGT 61.570 66.667 0.00 0.00 0.00 3.72
2035 2331 2.431683 CCCCCTCAGGTGTGTGTG 59.568 66.667 0.00 0.00 0.00 3.82
2036 2332 2.452064 CCCCCTCAGGTGTGTGTGT 61.452 63.158 0.00 0.00 0.00 3.72
2037 2333 1.531748 CCCCTCAGGTGTGTGTGTT 59.468 57.895 0.00 0.00 0.00 3.32
2038 2334 0.106719 CCCCTCAGGTGTGTGTGTTT 60.107 55.000 0.00 0.00 0.00 2.83
2039 2335 1.684869 CCCCTCAGGTGTGTGTGTTTT 60.685 52.381 0.00 0.00 0.00 2.43
2040 2336 2.422235 CCCCTCAGGTGTGTGTGTTTTA 60.422 50.000 0.00 0.00 0.00 1.52
2041 2337 3.486383 CCCTCAGGTGTGTGTGTTTTAT 58.514 45.455 0.00 0.00 0.00 1.40
2045 2341 5.241506 CCTCAGGTGTGTGTGTTTTATCATT 59.758 40.000 0.00 0.00 0.00 2.57
2046 2342 6.239008 CCTCAGGTGTGTGTGTTTTATCATTT 60.239 38.462 0.00 0.00 0.00 2.32
2047 2343 7.106439 TCAGGTGTGTGTGTTTTATCATTTT 57.894 32.000 0.00 0.00 0.00 1.82
2048 2344 7.199766 TCAGGTGTGTGTGTTTTATCATTTTC 58.800 34.615 0.00 0.00 0.00 2.29
2049 2345 6.420604 CAGGTGTGTGTGTTTTATCATTTTCC 59.579 38.462 0.00 0.00 0.00 3.13
2051 2347 5.694458 GTGTGTGTGTTTTATCATTTTCCCC 59.306 40.000 0.00 0.00 0.00 4.81
2052 2348 5.221541 TGTGTGTGTTTTATCATTTTCCCCC 60.222 40.000 0.00 0.00 0.00 5.40
2069 2365 1.966845 CCCCCTGAACTTCTTCCCTA 58.033 55.000 0.00 0.00 0.00 3.53
2070 2366 1.840635 CCCCCTGAACTTCTTCCCTAG 59.159 57.143 0.00 0.00 0.00 3.02
2071 2367 1.210722 CCCCTGAACTTCTTCCCTAGC 59.789 57.143 0.00 0.00 0.00 3.42
2072 2368 2.192263 CCCTGAACTTCTTCCCTAGCT 58.808 52.381 0.00 0.00 0.00 3.32
2073 2369 2.169561 CCCTGAACTTCTTCCCTAGCTC 59.830 54.545 0.00 0.00 0.00 4.09
2074 2370 2.169561 CCTGAACTTCTTCCCTAGCTCC 59.830 54.545 0.00 0.00 0.00 4.70
2075 2371 1.825474 TGAACTTCTTCCCTAGCTCCG 59.175 52.381 0.00 0.00 0.00 4.63
2076 2372 0.537653 AACTTCTTCCCTAGCTCCGC 59.462 55.000 0.00 0.00 0.00 5.54
2077 2373 1.331399 ACTTCTTCCCTAGCTCCGCC 61.331 60.000 0.00 0.00 0.00 6.13
2078 2374 1.305802 TTCTTCCCTAGCTCCGCCA 60.306 57.895 0.00 0.00 0.00 5.69
2079 2375 1.614241 TTCTTCCCTAGCTCCGCCAC 61.614 60.000 0.00 0.00 0.00 5.01
2080 2376 2.038975 TTCCCTAGCTCCGCCACT 59.961 61.111 0.00 0.00 0.00 4.00
2082 2378 4.537433 CCCTAGCTCCGCCACTGC 62.537 72.222 0.00 0.00 0.00 4.40
2083 2379 3.774528 CCTAGCTCCGCCACTGCA 61.775 66.667 0.00 0.00 37.32 4.41
2084 2380 2.503061 CTAGCTCCGCCACTGCAT 59.497 61.111 0.00 0.00 37.32 3.96
2087 2383 0.539518 TAGCTCCGCCACTGCATTTA 59.460 50.000 0.00 0.00 37.32 1.40
2089 2385 0.308993 GCTCCGCCACTGCATTTATC 59.691 55.000 0.00 0.00 37.32 1.75
2090 2386 0.947244 CTCCGCCACTGCATTTATCC 59.053 55.000 0.00 0.00 37.32 2.59
2091 2387 0.254462 TCCGCCACTGCATTTATCCA 59.746 50.000 0.00 0.00 37.32 3.41
2092 2388 1.102154 CCGCCACTGCATTTATCCAA 58.898 50.000 0.00 0.00 37.32 3.53
2093 2389 1.682854 CCGCCACTGCATTTATCCAAT 59.317 47.619 0.00 0.00 37.32 3.16
2094 2390 2.101249 CCGCCACTGCATTTATCCAATT 59.899 45.455 0.00 0.00 37.32 2.32
2095 2391 3.317711 CCGCCACTGCATTTATCCAATTA 59.682 43.478 0.00 0.00 37.32 1.40
2096 2392 4.202101 CCGCCACTGCATTTATCCAATTAA 60.202 41.667 0.00 0.00 37.32 1.40
2097 2393 4.739716 CGCCACTGCATTTATCCAATTAAC 59.260 41.667 0.00 0.00 37.32 2.01
2098 2394 5.049828 GCCACTGCATTTATCCAATTAACC 58.950 41.667 0.00 0.00 37.47 2.85
2099 2395 5.600696 CCACTGCATTTATCCAATTAACCC 58.399 41.667 0.00 0.00 0.00 4.11
2100 2396 5.280945 CACTGCATTTATCCAATTAACCCG 58.719 41.667 0.00 0.00 0.00 5.28
2101 2397 4.953579 ACTGCATTTATCCAATTAACCCGT 59.046 37.500 0.00 0.00 0.00 5.28
2102 2398 6.038825 CACTGCATTTATCCAATTAACCCGTA 59.961 38.462 0.00 0.00 0.00 4.02
2103 2399 6.603997 ACTGCATTTATCCAATTAACCCGTAA 59.396 34.615 0.00 0.00 0.00 3.18
2104 2400 7.286775 ACTGCATTTATCCAATTAACCCGTAAT 59.713 33.333 0.00 0.00 33.58 1.89
2105 2401 8.012957 TGCATTTATCCAATTAACCCGTAATT 57.987 30.769 0.00 0.00 42.12 1.40
2106 2402 8.478877 TGCATTTATCCAATTAACCCGTAATTT 58.521 29.630 0.00 0.00 39.88 1.82
2107 2403 9.968870 GCATTTATCCAATTAACCCGTAATTTA 57.031 29.630 0.00 0.00 39.88 1.40
2115 2411 9.251792 CCAATTAACCCGTAATTTAAATAAGGC 57.748 33.333 0.01 0.00 39.88 4.35
2116 2412 9.804758 CAATTAACCCGTAATTTAAATAAGGCA 57.195 29.630 0.01 0.00 39.88 4.75
2117 2413 9.806203 AATTAACCCGTAATTTAAATAAGGCAC 57.194 29.630 0.01 0.00 38.98 5.01
2119 2415 6.445357 ACCCGTAATTTAAATAAGGCACTG 57.555 37.500 0.01 0.00 40.86 3.66
2120 2416 5.947566 ACCCGTAATTTAAATAAGGCACTGT 59.052 36.000 0.01 0.00 40.86 3.55
2121 2417 6.127842 ACCCGTAATTTAAATAAGGCACTGTG 60.128 38.462 2.76 2.76 40.86 3.66
2122 2418 6.127842 CCCGTAATTTAAATAAGGCACTGTGT 60.128 38.462 9.86 0.00 40.86 3.72
2157 2453 2.552599 TGCACACGGAGGACAAAATA 57.447 45.000 0.00 0.00 0.00 1.40
2158 2454 3.066291 TGCACACGGAGGACAAAATAT 57.934 42.857 0.00 0.00 0.00 1.28
2159 2455 3.006940 TGCACACGGAGGACAAAATATC 58.993 45.455 0.00 0.00 0.00 1.63
2161 2457 2.943033 CACACGGAGGACAAAATATCCC 59.057 50.000 0.00 0.00 36.86 3.85
2162 2458 2.092592 ACACGGAGGACAAAATATCCCC 60.093 50.000 0.00 0.00 36.86 4.81
2163 2459 2.092646 CACGGAGGACAAAATATCCCCA 60.093 50.000 0.00 0.00 36.86 4.96
2164 2460 2.172717 ACGGAGGACAAAATATCCCCAG 59.827 50.000 0.00 0.00 36.86 4.45
2165 2461 2.172717 CGGAGGACAAAATATCCCCAGT 59.827 50.000 0.00 0.00 36.86 4.00
2169 2466 5.377478 GAGGACAAAATATCCCCAGTTAGG 58.623 45.833 0.00 0.00 36.86 2.69
2191 2488 0.316841 TGCCATTCGGAAGCAAAACC 59.683 50.000 2.54 0.00 32.56 3.27
2206 2503 3.485743 GCAAAACCGAACACAATCTTGTC 59.514 43.478 0.00 0.00 39.91 3.18
2214 2513 7.974675 ACCGAACACAATCTTGTCAATATAAG 58.025 34.615 0.00 0.00 39.91 1.73
2215 2514 7.606456 ACCGAACACAATCTTGTCAATATAAGT 59.394 33.333 0.00 0.00 39.91 2.24
2240 2539 7.494625 GTCTCCGAGTATGAAATTTGGATGTTA 59.505 37.037 0.00 0.00 0.00 2.41
2241 2540 7.710907 TCTCCGAGTATGAAATTTGGATGTTAG 59.289 37.037 0.00 0.00 0.00 2.34
2285 2585 1.228862 ATCTGGGGTGCACCAAACC 60.229 57.895 35.78 27.21 40.68 3.27
2322 2622 8.871686 GGCTTTAACCCAATTGTTATATTCAG 57.128 34.615 4.43 0.00 31.19 3.02
2359 2659 2.427095 TCCCATAGTCTCATGTGTCACG 59.573 50.000 0.00 0.00 0.00 4.35
2360 2660 2.166459 CCCATAGTCTCATGTGTCACGT 59.834 50.000 0.00 0.00 0.00 4.49
2365 2665 6.019559 CCATAGTCTCATGTGTCACGTTAATG 60.020 42.308 0.00 0.00 0.00 1.90
2382 2682 8.283291 CACGTTAATGCTTTAGAAGAAAGAAGT 58.717 33.333 1.28 0.00 0.00 3.01
2403 2703 6.494893 AGTTGAAATATTTTGCGCTAGTGA 57.505 33.333 9.73 0.00 0.00 3.41
2408 2708 8.755696 TGAAATATTTTGCGCTAGTGAAAAAT 57.244 26.923 29.23 29.23 36.48 1.82
2433 2733 3.775661 CCGAATGGTTGTTAATGTCCC 57.224 47.619 0.00 0.00 0.00 4.46
2445 2745 5.359756 TGTTAATGTCCCATTCATCTCTCG 58.640 41.667 0.00 0.00 0.00 4.04
2446 2746 5.104941 TGTTAATGTCCCATTCATCTCTCGT 60.105 40.000 0.00 0.00 0.00 4.18
2457 2757 6.703165 CCATTCATCTCTCGTTGATGTCATTA 59.297 38.462 12.11 0.00 41.30 1.90
2465 2765 8.968242 TCTCTCGTTGATGTCATTAATATTTCG 58.032 33.333 0.00 0.00 0.00 3.46
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.962356 GGGAACACATGTGGCCTCTG 60.962 60.000 28.64 3.16 34.19 3.35
1 2 1.136329 AGGGAACACATGTGGCCTCT 61.136 55.000 28.64 20.82 34.19 3.69
2 3 0.678048 GAGGGAACACATGTGGCCTC 60.678 60.000 28.64 20.20 34.19 4.70
3 4 1.380302 GAGGGAACACATGTGGCCT 59.620 57.895 28.64 17.56 34.19 5.19
4 5 1.678970 GGAGGGAACACATGTGGCC 60.679 63.158 28.64 26.11 34.19 5.36
5 6 0.962356 CTGGAGGGAACACATGTGGC 60.962 60.000 28.64 19.43 34.19 5.01
6 7 0.322816 CCTGGAGGGAACACATGTGG 60.323 60.000 28.64 11.73 37.23 4.17
7 8 3.254629 CCTGGAGGGAACACATGTG 57.745 57.895 24.25 24.25 37.23 3.21
20 21 3.011517 GCAAGCTCCCTCCCTGGA 61.012 66.667 0.00 0.00 38.35 3.86
21 22 4.120755 GGCAAGCTCCCTCCCTGG 62.121 72.222 0.00 0.00 0.00 4.45
22 23 4.120755 GGGCAAGCTCCCTCCCTG 62.121 72.222 3.13 0.00 43.13 4.45
26 27 4.722700 TTGCGGGCAAGCTCCCTC 62.723 66.667 8.77 1.33 44.30 4.30
27 28 3.590466 AATTGCGGGCAAGCTCCCT 62.590 57.895 12.07 0.00 44.30 4.20
28 29 2.171209 AAAATTGCGGGCAAGCTCCC 62.171 55.000 12.07 0.04 43.02 4.30
29 30 0.530288 TAAAATTGCGGGCAAGCTCC 59.470 50.000 12.07 0.00 39.47 4.70
30 31 2.099756 AGATAAAATTGCGGGCAAGCTC 59.900 45.455 12.07 4.34 39.47 4.09
31 32 2.102578 AGATAAAATTGCGGGCAAGCT 58.897 42.857 12.07 0.00 39.47 3.74
32 33 2.584492 AGATAAAATTGCGGGCAAGC 57.416 45.000 12.07 0.00 39.47 4.01
33 34 4.108699 TGAAGATAAAATTGCGGGCAAG 57.891 40.909 12.07 0.00 39.47 4.01
34 35 4.493547 CTTGAAGATAAAATTGCGGGCAA 58.506 39.130 8.72 8.72 40.47 4.52
35 36 3.119173 CCTTGAAGATAAAATTGCGGGCA 60.119 43.478 0.00 0.00 0.00 5.36
36 37 3.119137 ACCTTGAAGATAAAATTGCGGGC 60.119 43.478 0.00 0.00 0.00 6.13
37 38 4.718940 ACCTTGAAGATAAAATTGCGGG 57.281 40.909 0.00 0.00 0.00 6.13
38 39 6.258160 CAGTACCTTGAAGATAAAATTGCGG 58.742 40.000 0.00 0.00 0.00 5.69
39 40 6.093495 TCCAGTACCTTGAAGATAAAATTGCG 59.907 38.462 0.00 0.00 0.00 4.85
40 41 7.391148 TCCAGTACCTTGAAGATAAAATTGC 57.609 36.000 0.00 0.00 0.00 3.56
41 42 9.014297 ACTTCCAGTACCTTGAAGATAAAATTG 57.986 33.333 18.30 0.00 35.93 2.32
42 43 9.014297 CACTTCCAGTACCTTGAAGATAAAATT 57.986 33.333 18.30 0.00 35.93 1.82
43 44 7.611855 CCACTTCCAGTACCTTGAAGATAAAAT 59.388 37.037 18.30 0.00 35.93 1.82
44 45 6.940298 CCACTTCCAGTACCTTGAAGATAAAA 59.060 38.462 18.30 0.00 35.93 1.52
45 46 6.271391 TCCACTTCCAGTACCTTGAAGATAAA 59.729 38.462 18.30 4.03 35.93 1.40
46 47 5.783360 TCCACTTCCAGTACCTTGAAGATAA 59.217 40.000 18.30 5.27 35.93 1.75
47 48 5.338632 TCCACTTCCAGTACCTTGAAGATA 58.661 41.667 18.30 5.51 35.93 1.98
48 49 4.168101 TCCACTTCCAGTACCTTGAAGAT 58.832 43.478 18.30 5.37 35.93 2.40
49 50 3.583228 TCCACTTCCAGTACCTTGAAGA 58.417 45.455 18.30 0.49 35.93 2.87
50 51 4.559862 ATCCACTTCCAGTACCTTGAAG 57.440 45.455 12.57 12.57 38.62 3.02
51 52 4.562757 CGAATCCACTTCCAGTACCTTGAA 60.563 45.833 0.00 0.00 0.00 2.69
52 53 3.056107 CGAATCCACTTCCAGTACCTTGA 60.056 47.826 0.00 0.00 0.00 3.02
53 54 3.262420 CGAATCCACTTCCAGTACCTTG 58.738 50.000 0.00 0.00 0.00 3.61
54 55 2.354805 GCGAATCCACTTCCAGTACCTT 60.355 50.000 0.00 0.00 0.00 3.50
55 56 1.207329 GCGAATCCACTTCCAGTACCT 59.793 52.381 0.00 0.00 0.00 3.08
56 57 1.207329 AGCGAATCCACTTCCAGTACC 59.793 52.381 0.00 0.00 0.00 3.34
57 58 2.673368 CAAGCGAATCCACTTCCAGTAC 59.327 50.000 0.00 0.00 0.00 2.73
58 59 2.565391 TCAAGCGAATCCACTTCCAGTA 59.435 45.455 0.00 0.00 0.00 2.74
59 60 1.347707 TCAAGCGAATCCACTTCCAGT 59.652 47.619 0.00 0.00 0.00 4.00
60 61 2.005451 CTCAAGCGAATCCACTTCCAG 58.995 52.381 0.00 0.00 0.00 3.86
61 62 1.339055 CCTCAAGCGAATCCACTTCCA 60.339 52.381 0.00 0.00 0.00 3.53
62 63 1.373570 CCTCAAGCGAATCCACTTCC 58.626 55.000 0.00 0.00 0.00 3.46
63 64 0.729690 GCCTCAAGCGAATCCACTTC 59.270 55.000 0.00 0.00 0.00 3.01
64 65 2.859992 GCCTCAAGCGAATCCACTT 58.140 52.632 0.00 0.00 0.00 3.16
65 66 4.625800 GCCTCAAGCGAATCCACT 57.374 55.556 0.00 0.00 0.00 4.00
74 75 3.793144 CCGTCAAGCGCCTCAAGC 61.793 66.667 2.29 0.00 39.71 4.01
75 76 0.179111 TATCCGTCAAGCGCCTCAAG 60.179 55.000 2.29 0.00 39.71 3.02
76 77 0.248012 TTATCCGTCAAGCGCCTCAA 59.752 50.000 2.29 0.00 39.71 3.02
77 78 0.459585 GTTATCCGTCAAGCGCCTCA 60.460 55.000 2.29 0.00 39.71 3.86
78 79 1.480219 CGTTATCCGTCAAGCGCCTC 61.480 60.000 2.29 0.00 39.71 4.70
79 80 1.518572 CGTTATCCGTCAAGCGCCT 60.519 57.895 2.29 0.00 39.71 5.52
80 81 2.522638 CCGTTATCCGTCAAGCGCC 61.523 63.158 2.29 0.00 39.71 6.53
81 82 1.079875 TTCCGTTATCCGTCAAGCGC 61.080 55.000 0.00 0.00 39.71 5.92
82 83 0.921347 CTTCCGTTATCCGTCAAGCG 59.079 55.000 0.00 0.00 40.95 4.68
83 84 0.651031 GCTTCCGTTATCCGTCAAGC 59.349 55.000 0.00 0.00 40.91 4.01
84 85 1.287425 GGCTTCCGTTATCCGTCAAG 58.713 55.000 0.00 0.00 33.66 3.02
85 86 0.108041 GGGCTTCCGTTATCCGTCAA 60.108 55.000 0.00 0.00 33.66 3.18
86 87 1.259142 TGGGCTTCCGTTATCCGTCA 61.259 55.000 0.00 0.00 33.66 4.35
87 88 0.108041 TTGGGCTTCCGTTATCCGTC 60.108 55.000 0.00 0.00 33.66 4.79
88 89 0.107848 CTTGGGCTTCCGTTATCCGT 60.108 55.000 0.00 0.00 33.66 4.69
89 90 0.814010 CCTTGGGCTTCCGTTATCCG 60.814 60.000 0.00 0.00 0.00 4.18
90 91 0.255033 ACCTTGGGCTTCCGTTATCC 59.745 55.000 0.00 0.00 0.00 2.59
91 92 2.835027 CTACCTTGGGCTTCCGTTATC 58.165 52.381 0.00 0.00 0.00 1.75
92 93 1.134189 GCTACCTTGGGCTTCCGTTAT 60.134 52.381 0.00 0.00 0.00 1.89
93 94 0.251073 GCTACCTTGGGCTTCCGTTA 59.749 55.000 0.00 0.00 0.00 3.18
94 95 1.002502 GCTACCTTGGGCTTCCGTT 60.003 57.895 0.00 0.00 0.00 4.44
95 96 2.669240 GCTACCTTGGGCTTCCGT 59.331 61.111 0.00 0.00 0.00 4.69
96 97 2.511600 CGCTACCTTGGGCTTCCG 60.512 66.667 0.00 0.00 0.00 4.30
97 98 2.824489 GCGCTACCTTGGGCTTCC 60.824 66.667 0.00 0.00 41.74 3.46
98 99 1.440145 GATGCGCTACCTTGGGCTTC 61.440 60.000 9.73 4.78 44.66 3.86
99 100 1.452108 GATGCGCTACCTTGGGCTT 60.452 57.895 9.73 0.00 44.66 4.35
100 101 2.190578 GATGCGCTACCTTGGGCT 59.809 61.111 9.73 0.00 44.66 5.19
101 102 3.272334 CGATGCGCTACCTTGGGC 61.272 66.667 9.73 0.00 44.63 5.36
102 103 2.588877 CCGATGCGCTACCTTGGG 60.589 66.667 9.73 0.00 0.00 4.12
103 104 2.587322 TTCCCGATGCGCTACCTTGG 62.587 60.000 9.73 4.08 0.00 3.61
104 105 1.153449 TTCCCGATGCGCTACCTTG 60.153 57.895 9.73 0.00 0.00 3.61
105 106 1.153429 GTTCCCGATGCGCTACCTT 60.153 57.895 9.73 0.00 0.00 3.50
106 107 2.499685 GTTCCCGATGCGCTACCT 59.500 61.111 9.73 0.00 0.00 3.08
107 108 2.960129 CGTTCCCGATGCGCTACC 60.960 66.667 9.73 0.00 35.63 3.18
108 109 1.944676 CTCGTTCCCGATGCGCTAC 60.945 63.158 9.73 1.09 43.27 3.58
109 110 2.411701 CTCGTTCCCGATGCGCTA 59.588 61.111 9.73 0.00 43.27 4.26
110 111 4.514577 CCTCGTTCCCGATGCGCT 62.515 66.667 9.73 0.00 43.27 5.92
130 131 2.760159 ATGATTTTCCGGCGGTGCG 61.760 57.895 27.32 0.00 0.00 5.34
131 132 1.226660 CATGATTTTCCGGCGGTGC 60.227 57.895 27.32 12.03 0.00 5.01
132 133 0.808125 TTCATGATTTTCCGGCGGTG 59.192 50.000 27.32 15.01 0.00 4.94
133 134 1.094785 CTTCATGATTTTCCGGCGGT 58.905 50.000 27.32 6.05 0.00 5.68
134 135 1.378531 TCTTCATGATTTTCCGGCGG 58.621 50.000 22.51 22.51 0.00 6.13
135 136 2.161410 TGTTCTTCATGATTTTCCGGCG 59.839 45.455 0.00 0.00 0.00 6.46
136 137 3.848272 TGTTCTTCATGATTTTCCGGC 57.152 42.857 0.00 0.00 0.00 6.13
137 138 4.094887 ACGATGTTCTTCATGATTTTCCGG 59.905 41.667 0.00 0.00 36.83 5.14
138 139 5.163864 TGACGATGTTCTTCATGATTTTCCG 60.164 40.000 0.00 0.00 36.83 4.30
139 140 6.182039 TGACGATGTTCTTCATGATTTTCC 57.818 37.500 0.00 0.00 36.83 3.13
140 141 6.744537 CCTTGACGATGTTCTTCATGATTTTC 59.255 38.462 0.00 0.00 36.83 2.29
141 142 6.207417 ACCTTGACGATGTTCTTCATGATTTT 59.793 34.615 0.00 0.00 36.83 1.82
142 143 5.707298 ACCTTGACGATGTTCTTCATGATTT 59.293 36.000 0.00 0.00 36.83 2.17
143 144 5.248640 ACCTTGACGATGTTCTTCATGATT 58.751 37.500 0.00 0.00 36.83 2.57
144 145 4.836825 ACCTTGACGATGTTCTTCATGAT 58.163 39.130 0.00 0.00 36.83 2.45
145 146 4.271696 ACCTTGACGATGTTCTTCATGA 57.728 40.909 0.00 0.00 36.83 3.07
146 147 4.452114 TCAACCTTGACGATGTTCTTCATG 59.548 41.667 0.00 0.00 32.56 3.07
147 148 4.641396 TCAACCTTGACGATGTTCTTCAT 58.359 39.130 0.00 0.00 34.07 2.57
148 149 4.066646 TCAACCTTGACGATGTTCTTCA 57.933 40.909 0.00 0.00 31.01 3.02
149 150 4.452455 ACATCAACCTTGACGATGTTCTTC 59.548 41.667 0.00 0.00 45.69 2.87
150 151 4.214119 CACATCAACCTTGACGATGTTCTT 59.786 41.667 1.66 0.00 45.69 2.52
151 152 3.748048 CACATCAACCTTGACGATGTTCT 59.252 43.478 1.66 0.00 45.69 3.01
152 153 3.667960 GCACATCAACCTTGACGATGTTC 60.668 47.826 1.66 0.00 45.69 3.18
153 154 2.226437 GCACATCAACCTTGACGATGTT 59.774 45.455 1.66 0.00 45.69 2.71
155 156 2.079158 AGCACATCAACCTTGACGATG 58.921 47.619 0.00 0.00 40.49 3.84
156 157 2.479566 AGCACATCAACCTTGACGAT 57.520 45.000 0.00 0.00 40.49 3.73
157 158 2.254546 AAGCACATCAACCTTGACGA 57.745 45.000 0.00 0.00 40.49 4.20
158 159 3.364964 GGTTAAGCACATCAACCTTGACG 60.365 47.826 0.00 0.00 40.49 4.35
159 160 4.160736 GGTTAAGCACATCAACCTTGAC 57.839 45.455 0.00 0.00 40.49 3.18
164 165 2.790433 TCCAGGTTAAGCACATCAACC 58.210 47.619 7.52 0.00 41.72 3.77
165 166 5.648092 ACTTATCCAGGTTAAGCACATCAAC 59.352 40.000 14.97 0.00 31.22 3.18
166 167 5.815581 ACTTATCCAGGTTAAGCACATCAA 58.184 37.500 14.97 0.00 31.22 2.57
167 168 5.435686 ACTTATCCAGGTTAAGCACATCA 57.564 39.130 14.97 0.00 31.22 3.07
168 169 6.116126 AGAACTTATCCAGGTTAAGCACATC 58.884 40.000 14.97 9.63 31.22 3.06
169 170 6.067217 AGAACTTATCCAGGTTAAGCACAT 57.933 37.500 14.97 2.46 31.22 3.21
170 171 5.488341 GAGAACTTATCCAGGTTAAGCACA 58.512 41.667 14.97 0.00 31.22 4.57
171 172 4.876679 GGAGAACTTATCCAGGTTAAGCAC 59.123 45.833 14.97 10.21 36.79 4.40
172 173 4.534500 TGGAGAACTTATCCAGGTTAAGCA 59.466 41.667 14.97 4.49 41.96 3.91
173 174 5.099042 TGGAGAACTTATCCAGGTTAAGC 57.901 43.478 14.97 0.00 41.96 3.09
187 188 9.533253 CATTGTGAAAAATTAAACTGGAGAACT 57.467 29.630 0.00 0.00 0.00 3.01
188 189 8.275632 GCATTGTGAAAAATTAAACTGGAGAAC 58.724 33.333 0.00 0.00 0.00 3.01
189 190 7.168972 CGCATTGTGAAAAATTAAACTGGAGAA 59.831 33.333 0.00 0.00 0.00 2.87
230 233 3.525537 CAAGGACAACAGCTGTATCGAT 58.474 45.455 22.01 10.19 38.84 3.59
270 274 6.238211 CGTGACATTTTCTTCAGAAGAACAGT 60.238 38.462 22.97 19.90 46.53 3.55
295 299 2.294512 CCTTTGAGCCCAAGTTTCAGAC 59.705 50.000 0.00 0.00 33.23 3.51
297 301 2.294512 GTCCTTTGAGCCCAAGTTTCAG 59.705 50.000 0.00 0.00 33.23 3.02
434 438 7.711772 TGCATATCATTCCATTGAAATTGGTTC 59.288 33.333 0.00 0.00 33.32 3.62
453 457 3.372206 GGCGAATACACAGGATGCATATC 59.628 47.826 0.00 0.00 42.53 1.63
457 461 0.251634 TGGCGAATACACAGGATGCA 59.748 50.000 0.00 0.00 42.53 3.96
527 531 4.780815 TGCCTAGGAGTACATGATTTTGG 58.219 43.478 14.75 0.00 0.00 3.28
598 602 2.438763 AGAGATTCCCTGATGCTCCTTG 59.561 50.000 0.00 0.00 0.00 3.61
801 809 4.279420 GCCTTTCTCACTCCTTTTGACATT 59.721 41.667 0.00 0.00 0.00 2.71
804 812 3.003793 GTGCCTTTCTCACTCCTTTTGAC 59.996 47.826 0.00 0.00 0.00 3.18
807 815 3.297134 TGTGCCTTTCTCACTCCTTTT 57.703 42.857 0.00 0.00 35.58 2.27
828 836 2.653702 GTGGAGACGCTCTGTGCT 59.346 61.111 6.78 0.00 40.11 4.40
839 847 0.191064 ACTCTGTTGGGAGGTGGAGA 59.809 55.000 0.00 0.00 37.63 3.71
891 901 3.068024 CCACAAGTTAAGTGCATGTTGGT 59.932 43.478 0.00 0.00 35.69 3.67
1049 1104 2.934887 CTTCACACCATATGCCATGGA 58.065 47.619 18.40 0.31 41.64 3.41
1135 1190 4.456911 CACAAACTACTGACCATGCAATCT 59.543 41.667 0.00 0.00 0.00 2.40
1481 1625 0.683504 ACTAGCAGTACCACCCGGAG 60.684 60.000 0.73 0.00 35.59 4.63
1505 1651 5.484173 TTTCTGAAACTGCAACACTACAG 57.516 39.130 0.00 0.00 39.86 2.74
1541 1689 3.243168 CCGATACTCCGATACCGACAAAA 60.243 47.826 0.00 0.00 38.22 2.44
1557 1705 5.148651 AGGTAAACATATCAGGCCGATAC 57.851 43.478 16.22 7.90 39.44 2.24
1558 1706 6.921486 TTAGGTAAACATATCAGGCCGATA 57.079 37.500 16.23 16.23 40.90 2.92
1559 1707 5.818678 TTAGGTAAACATATCAGGCCGAT 57.181 39.130 13.38 13.38 38.21 4.18
1560 1708 5.071250 ACATTAGGTAAACATATCAGGCCGA 59.929 40.000 0.00 0.00 0.00 5.54
1561 1709 5.179368 CACATTAGGTAAACATATCAGGCCG 59.821 44.000 0.00 0.00 0.00 6.13
1562 1710 6.017109 CACACATTAGGTAAACATATCAGGCC 60.017 42.308 0.00 0.00 0.00 5.19
1563 1711 6.513393 GCACACATTAGGTAAACATATCAGGC 60.513 42.308 0.00 0.00 0.00 4.85
1564 1712 6.767902 AGCACACATTAGGTAAACATATCAGG 59.232 38.462 0.00 0.00 0.00 3.86
1616 1786 2.230508 TCTGGTACCTGCTGACTAAACG 59.769 50.000 14.36 0.00 0.00 3.60
1683 1853 6.474819 TCCATTTTATCCGCGTATATTGTG 57.525 37.500 4.92 0.00 0.00 3.33
1691 1861 4.035208 GTCTGAATTCCATTTTATCCGCGT 59.965 41.667 4.92 0.00 0.00 6.01
1716 1887 5.007626 ACATACGGCATTTTAGTGTATGCAG 59.992 40.000 9.80 7.39 46.91 4.41
1761 1932 3.456280 TGGTTTGAAAATTGCAGACTGC 58.544 40.909 20.86 20.86 45.29 4.40
1762 1933 6.293027 GGAAATGGTTTGAAAATTGCAGACTG 60.293 38.462 0.00 0.00 0.00 3.51
1763 1934 5.759763 GGAAATGGTTTGAAAATTGCAGACT 59.240 36.000 0.00 0.00 0.00 3.24
1764 1935 5.526846 TGGAAATGGTTTGAAAATTGCAGAC 59.473 36.000 0.00 0.00 0.00 3.51
1766 1937 6.563222 ATGGAAATGGTTTGAAAATTGCAG 57.437 33.333 0.00 0.00 0.00 4.41
1767 1938 6.238953 CCAATGGAAATGGTTTGAAAATTGCA 60.239 34.615 0.00 0.00 33.08 4.08
1768 1939 6.151004 CCAATGGAAATGGTTTGAAAATTGC 58.849 36.000 0.00 0.00 33.08 3.56
1769 1940 6.151004 GCCAATGGAAATGGTTTGAAAATTG 58.849 36.000 2.05 0.00 40.23 2.32
1770 1941 5.832060 TGCCAATGGAAATGGTTTGAAAATT 59.168 32.000 2.05 0.00 40.23 1.82
1771 1942 5.383476 TGCCAATGGAAATGGTTTGAAAAT 58.617 33.333 2.05 0.00 40.23 1.82
1772 1943 4.785301 TGCCAATGGAAATGGTTTGAAAA 58.215 34.783 2.05 0.00 40.23 2.29
1773 1944 4.428294 TGCCAATGGAAATGGTTTGAAA 57.572 36.364 2.05 0.00 40.23 2.69
1776 1947 5.708877 AAAATGCCAATGGAAATGGTTTG 57.291 34.783 2.05 0.00 40.23 2.93
1780 1951 5.961396 TTGAAAAATGCCAATGGAAATGG 57.039 34.783 2.05 0.00 41.08 3.16
1781 1952 6.972722 ACTTTGAAAAATGCCAATGGAAATG 58.027 32.000 2.05 0.00 0.00 2.32
1783 1954 6.355747 AGACTTTGAAAAATGCCAATGGAAA 58.644 32.000 2.05 0.00 0.00 3.13
1785 1956 5.549742 AGACTTTGAAAAATGCCAATGGA 57.450 34.783 2.05 0.00 0.00 3.41
1786 1957 6.587608 GTCTAGACTTTGAAAAATGCCAATGG 59.412 38.462 15.91 0.00 0.00 3.16
1787 1958 7.373493 AGTCTAGACTTTGAAAAATGCCAATG 58.627 34.615 20.00 0.00 38.83 2.82
1788 1959 7.530426 AGTCTAGACTTTGAAAAATGCCAAT 57.470 32.000 20.00 0.00 38.83 3.16
1789 1960 6.959639 AGTCTAGACTTTGAAAAATGCCAA 57.040 33.333 20.00 0.00 38.83 4.52
1804 2010 8.634475 ATTTTGCAAACTTTGAAAGTCTAGAC 57.366 30.769 15.41 15.41 41.91 2.59
1806 2012 9.693157 CAAATTTTGCAAACTTTGAAAGTCTAG 57.307 29.630 34.16 15.09 41.91 2.43
1829 2035 8.911755 TCAAACTTTGAAAAATGCCACTGCAAA 61.912 33.333 1.47 0.00 43.63 3.68
1833 2039 6.419980 TTCAAACTTTGAAAAATGCCACTG 57.580 33.333 13.50 0.00 45.94 3.66
1843 2049 8.790072 GCCGCTGCAATTTTCAAACTTTGAAA 62.790 38.462 20.92 20.92 45.82 2.69
1844 2050 7.420303 GCCGCTGCAATTTTCAAACTTTGAA 62.420 40.000 12.12 12.12 41.71 2.69
1845 2051 3.555139 CCGCTGCAATTTTCAAACTTTGA 59.445 39.130 0.00 0.00 38.04 2.69
1846 2052 3.845662 GCCGCTGCAATTTTCAAACTTTG 60.846 43.478 0.00 0.00 37.47 2.77
1848 2054 1.866601 GCCGCTGCAATTTTCAAACTT 59.133 42.857 0.00 0.00 37.47 2.66
1850 2056 0.161446 CGCCGCTGCAATTTTCAAAC 59.839 50.000 0.00 0.00 37.32 2.93
1851 2057 0.249238 ACGCCGCTGCAATTTTCAAA 60.249 45.000 0.00 0.00 37.32 2.69
1852 2058 0.249238 AACGCCGCTGCAATTTTCAA 60.249 45.000 0.00 0.00 37.32 2.69
1853 2059 0.249238 AAACGCCGCTGCAATTTTCA 60.249 45.000 0.00 0.00 37.32 2.69
1854 2060 0.434628 GAAACGCCGCTGCAATTTTC 59.565 50.000 0.00 2.41 37.32 2.29
1855 2061 1.274798 CGAAACGCCGCTGCAATTTT 61.275 50.000 0.00 0.00 37.32 1.82
1858 2064 3.027170 CTCGAAACGCCGCTGCAAT 62.027 57.895 0.00 0.00 37.32 3.56
1859 2065 3.711842 CTCGAAACGCCGCTGCAA 61.712 61.111 0.00 0.00 37.32 4.08
1860 2066 3.561217 TACTCGAAACGCCGCTGCA 62.561 57.895 0.00 0.00 37.32 4.41
1861 2067 1.693083 ATTACTCGAAACGCCGCTGC 61.693 55.000 0.00 0.00 0.00 5.25
1862 2068 0.297820 GATTACTCGAAACGCCGCTG 59.702 55.000 0.00 0.00 0.00 5.18
1875 2081 4.673441 CCACTCGAATTCTGACGATTACT 58.327 43.478 3.52 0.00 37.86 2.24
1880 2086 0.601057 TGCCACTCGAATTCTGACGA 59.399 50.000 3.52 0.00 37.03 4.20
1882 2088 5.277538 GGATAAATGCCACTCGAATTCTGAC 60.278 44.000 3.52 0.00 0.00 3.51
1884 2090 4.576053 TGGATAAATGCCACTCGAATTCTG 59.424 41.667 3.52 0.00 0.00 3.02
1885 2091 4.780815 TGGATAAATGCCACTCGAATTCT 58.219 39.130 3.52 0.00 0.00 2.40
1886 2092 4.576463 ACTGGATAAATGCCACTCGAATTC 59.424 41.667 0.00 0.00 0.00 2.17
1887 2093 4.336433 CACTGGATAAATGCCACTCGAATT 59.664 41.667 0.00 0.00 0.00 2.17
1888 2094 3.879295 CACTGGATAAATGCCACTCGAAT 59.121 43.478 0.00 0.00 0.00 3.34
1889 2095 3.270027 CACTGGATAAATGCCACTCGAA 58.730 45.455 0.00 0.00 0.00 3.71
1890 2096 2.419990 CCACTGGATAAATGCCACTCGA 60.420 50.000 0.00 0.00 0.00 4.04
1891 2097 1.942657 CCACTGGATAAATGCCACTCG 59.057 52.381 0.00 0.00 0.00 4.18
1892 2098 1.678101 GCCACTGGATAAATGCCACTC 59.322 52.381 0.00 0.00 0.00 3.51
1896 2102 0.465460 TCCGCCACTGGATAAATGCC 60.465 55.000 0.00 0.00 31.53 4.40
1897 2103 0.947244 CTCCGCCACTGGATAAATGC 59.053 55.000 0.00 0.00 37.41 3.56
1898 2104 0.947244 GCTCCGCCACTGGATAAATG 59.053 55.000 0.00 0.00 37.41 2.32
1899 2105 0.839946 AGCTCCGCCACTGGATAAAT 59.160 50.000 0.00 0.00 37.41 1.40
1901 2107 1.344438 CATAGCTCCGCCACTGGATAA 59.656 52.381 0.00 0.00 37.41 1.75
1902 2108 0.969149 CATAGCTCCGCCACTGGATA 59.031 55.000 0.00 0.00 37.41 2.59
1904 2110 1.685765 ACATAGCTCCGCCACTGGA 60.686 57.895 0.00 0.00 36.37 3.86
1905 2111 1.522355 CACATAGCTCCGCCACTGG 60.522 63.158 0.00 0.00 0.00 4.00
1906 2112 1.086067 CACACATAGCTCCGCCACTG 61.086 60.000 0.00 0.00 0.00 3.66
1909 2115 2.125147 GCACACATAGCTCCGCCA 60.125 61.111 0.00 0.00 0.00 5.69
1915 2121 1.630126 CCCCAGGAGCACACATAGCT 61.630 60.000 0.00 0.00 46.82 3.32
1916 2122 1.153086 CCCCAGGAGCACACATAGC 60.153 63.158 0.00 0.00 0.00 2.97
1917 2123 0.107508 CACCCCAGGAGCACACATAG 60.108 60.000 0.00 0.00 0.00 2.23
1918 2124 1.561769 CCACCCCAGGAGCACACATA 61.562 60.000 0.00 0.00 0.00 2.29
1920 2126 3.569210 CCACCCCAGGAGCACACA 61.569 66.667 0.00 0.00 0.00 3.72
1947 2153 1.632589 ACTTTTTGCTAAGGCTGGGG 58.367 50.000 0.00 0.00 39.59 4.96
1949 2155 5.393461 CCTTCATACTTTTTGCTAAGGCTGG 60.393 44.000 0.00 0.00 39.59 4.85
1950 2156 5.415701 TCCTTCATACTTTTTGCTAAGGCTG 59.584 40.000 0.00 0.00 39.59 4.85
1951 2157 5.570320 TCCTTCATACTTTTTGCTAAGGCT 58.430 37.500 0.00 0.00 39.59 4.58
1952 2158 5.897377 TCCTTCATACTTTTTGCTAAGGC 57.103 39.130 0.00 0.00 33.57 4.35
1987 2283 8.691661 TGCTAAATTTATCCTCATCTAAACCC 57.308 34.615 0.00 0.00 0.00 4.11
1993 2289 7.256083 GGCCAAATGCTAAATTTATCCTCATCT 60.256 37.037 0.00 0.00 40.92 2.90
1996 2292 5.070313 GGGCCAAATGCTAAATTTATCCTCA 59.930 40.000 4.39 0.00 40.92 3.86
1997 2293 5.511373 GGGGCCAAATGCTAAATTTATCCTC 60.511 44.000 4.39 0.00 40.92 3.71
1998 2294 4.347876 GGGGCCAAATGCTAAATTTATCCT 59.652 41.667 4.39 0.00 40.92 3.24
1999 2295 4.504864 GGGGGCCAAATGCTAAATTTATCC 60.505 45.833 4.39 0.00 40.92 2.59
2000 2296 4.347876 AGGGGGCCAAATGCTAAATTTATC 59.652 41.667 4.39 0.00 40.92 1.75
2002 2298 3.709141 GAGGGGGCCAAATGCTAAATTTA 59.291 43.478 4.39 0.00 40.92 1.40
2009 2305 2.361771 CTGAGGGGGCCAAATGCT 59.638 61.111 4.39 0.00 40.92 3.79
2010 2306 2.761213 CCTGAGGGGGCCAAATGC 60.761 66.667 4.39 0.00 40.16 3.56
2011 2307 1.683365 CACCTGAGGGGGCCAAATG 60.683 63.158 4.39 0.00 40.03 2.32
2012 2308 2.169810 ACACCTGAGGGGGCCAAAT 61.170 57.895 5.38 0.00 40.38 2.32
2017 2313 3.570212 ACACACACCTGAGGGGGC 61.570 66.667 5.38 0.00 40.38 5.80
2018 2314 1.994885 AACACACACACCTGAGGGGG 61.995 60.000 5.38 0.00 42.98 5.40
2019 2315 0.106719 AAACACACACACCTGAGGGG 60.107 55.000 0.00 0.00 41.89 4.79
2020 2316 1.762708 AAAACACACACACCTGAGGG 58.237 50.000 2.38 0.00 38.88 4.30
2021 2317 4.133820 TGATAAAACACACACACCTGAGG 58.866 43.478 0.00 0.00 0.00 3.86
2022 2318 5.947228 ATGATAAAACACACACACCTGAG 57.053 39.130 0.00 0.00 0.00 3.35
2024 2320 6.420604 GGAAAATGATAAAACACACACACCTG 59.579 38.462 0.00 0.00 0.00 4.00
2025 2321 6.462347 GGGAAAATGATAAAACACACACACCT 60.462 38.462 0.00 0.00 0.00 4.00
2026 2322 5.694458 GGGAAAATGATAAAACACACACACC 59.306 40.000 0.00 0.00 0.00 4.16
2027 2323 5.694458 GGGGAAAATGATAAAACACACACAC 59.306 40.000 0.00 0.00 0.00 3.82
2028 2324 5.221541 GGGGGAAAATGATAAAACACACACA 60.222 40.000 0.00 0.00 0.00 3.72
2029 2325 5.234752 GGGGGAAAATGATAAAACACACAC 58.765 41.667 0.00 0.00 0.00 3.82
2030 2326 5.476091 GGGGGAAAATGATAAAACACACA 57.524 39.130 0.00 0.00 0.00 3.72
2051 2347 1.210722 GCTAGGGAAGAAGTTCAGGGG 59.789 57.143 5.50 0.00 33.93 4.79
2052 2348 2.169561 GAGCTAGGGAAGAAGTTCAGGG 59.830 54.545 5.50 0.00 33.93 4.45
2053 2349 2.169561 GGAGCTAGGGAAGAAGTTCAGG 59.830 54.545 5.50 0.00 33.93 3.86
2054 2350 2.159170 CGGAGCTAGGGAAGAAGTTCAG 60.159 54.545 5.50 0.00 33.93 3.02
2055 2351 1.825474 CGGAGCTAGGGAAGAAGTTCA 59.175 52.381 5.50 0.00 33.93 3.18
2071 2367 0.947244 GGATAAATGCAGTGGCGGAG 59.053 55.000 0.00 0.00 45.35 4.63
2072 2368 0.254462 TGGATAAATGCAGTGGCGGA 59.746 50.000 0.00 0.00 45.35 5.54
2073 2369 1.102154 TTGGATAAATGCAGTGGCGG 58.898 50.000 0.00 0.00 45.35 6.13
2074 2370 3.441496 AATTGGATAAATGCAGTGGCG 57.559 42.857 0.00 0.00 45.35 5.69
2075 2371 5.049828 GGTTAATTGGATAAATGCAGTGGC 58.950 41.667 0.00 0.00 41.68 5.01
2076 2372 5.600696 GGGTTAATTGGATAAATGCAGTGG 58.399 41.667 0.00 0.00 0.00 4.00
2077 2373 5.163561 ACGGGTTAATTGGATAAATGCAGTG 60.164 40.000 0.00 0.00 0.00 3.66
2078 2374 4.953579 ACGGGTTAATTGGATAAATGCAGT 59.046 37.500 0.00 0.00 0.00 4.40
2079 2375 5.514274 ACGGGTTAATTGGATAAATGCAG 57.486 39.130 0.00 0.00 0.00 4.41
2080 2376 7.589958 ATTACGGGTTAATTGGATAAATGCA 57.410 32.000 0.00 0.00 0.00 3.96
2089 2385 9.251792 GCCTTATTTAAATTACGGGTTAATTGG 57.748 33.333 5.91 0.00 39.14 3.16
2090 2386 9.804758 TGCCTTATTTAAATTACGGGTTAATTG 57.195 29.630 5.91 0.00 39.14 2.32
2091 2387 9.806203 GTGCCTTATTTAAATTACGGGTTAATT 57.194 29.630 5.91 0.00 41.42 1.40
2092 2388 9.192642 AGTGCCTTATTTAAATTACGGGTTAAT 57.807 29.630 5.91 0.00 31.07 1.40
2093 2389 8.460428 CAGTGCCTTATTTAAATTACGGGTTAA 58.540 33.333 5.91 0.00 0.00 2.01
2094 2390 7.611079 ACAGTGCCTTATTTAAATTACGGGTTA 59.389 33.333 5.91 0.00 0.00 2.85
2095 2391 6.434965 ACAGTGCCTTATTTAAATTACGGGTT 59.565 34.615 5.91 0.00 0.00 4.11
2096 2392 5.947566 ACAGTGCCTTATTTAAATTACGGGT 59.052 36.000 5.91 1.56 0.00 5.28
2097 2393 6.127842 ACACAGTGCCTTATTTAAATTACGGG 60.128 38.462 5.91 5.28 0.00 5.28
2098 2394 6.848451 ACACAGTGCCTTATTTAAATTACGG 58.152 36.000 5.91 5.96 0.00 4.02
2099 2395 8.736751 AAACACAGTGCCTTATTTAAATTACG 57.263 30.769 5.91 0.00 0.00 3.18
2104 2400 9.563748 AGTACTAAACACAGTGCCTTATTTAAA 57.436 29.630 0.00 0.00 32.12 1.52
2105 2401 9.563748 AAGTACTAAACACAGTGCCTTATTTAA 57.436 29.630 0.00 0.00 32.12 1.52
2106 2402 8.995220 CAAGTACTAAACACAGTGCCTTATTTA 58.005 33.333 0.00 0.00 32.12 1.40
2107 2403 7.501225 ACAAGTACTAAACACAGTGCCTTATTT 59.499 33.333 0.00 0.00 32.12 1.40
2108 2404 6.996282 ACAAGTACTAAACACAGTGCCTTATT 59.004 34.615 0.00 0.00 32.12 1.40
2109 2405 6.531021 ACAAGTACTAAACACAGTGCCTTAT 58.469 36.000 0.00 0.00 32.12 1.73
2110 2406 5.920903 ACAAGTACTAAACACAGTGCCTTA 58.079 37.500 0.00 0.00 32.12 2.69
2111 2407 4.777463 ACAAGTACTAAACACAGTGCCTT 58.223 39.130 0.00 0.00 32.12 4.35
2112 2408 4.417426 ACAAGTACTAAACACAGTGCCT 57.583 40.909 0.00 0.00 32.12 4.75
2113 2409 6.796705 ATTACAAGTACTAAACACAGTGCC 57.203 37.500 0.00 0.00 32.12 5.01
2114 2410 7.112984 GCAAATTACAAGTACTAAACACAGTGC 59.887 37.037 0.00 0.00 0.00 4.40
2115 2411 8.126074 TGCAAATTACAAGTACTAAACACAGTG 58.874 33.333 0.00 0.00 0.00 3.66
2116 2412 8.126700 GTGCAAATTACAAGTACTAAACACAGT 58.873 33.333 0.00 0.00 0.00 3.55
2117 2413 8.126074 TGTGCAAATTACAAGTACTAAACACAG 58.874 33.333 0.00 0.00 0.00 3.66
2118 2414 7.911205 GTGTGCAAATTACAAGTACTAAACACA 59.089 33.333 0.00 0.12 33.62 3.72
2119 2415 7.111041 CGTGTGCAAATTACAAGTACTAAACAC 59.889 37.037 0.00 0.00 0.00 3.32
2120 2416 7.127042 CGTGTGCAAATTACAAGTACTAAACA 58.873 34.615 0.00 0.00 0.00 2.83
2121 2417 6.575942 CCGTGTGCAAATTACAAGTACTAAAC 59.424 38.462 0.00 0.00 0.00 2.01
2122 2418 6.482641 TCCGTGTGCAAATTACAAGTACTAAA 59.517 34.615 0.00 0.00 0.00 1.85
2161 2457 1.597742 CGAATGGCATCCCTAACTGG 58.402 55.000 0.00 0.00 0.00 4.00
2162 2458 1.140852 TCCGAATGGCATCCCTAACTG 59.859 52.381 0.00 0.00 34.14 3.16
2163 2459 1.507140 TCCGAATGGCATCCCTAACT 58.493 50.000 0.00 0.00 34.14 2.24
2164 2460 2.222027 CTTCCGAATGGCATCCCTAAC 58.778 52.381 0.00 0.00 34.14 2.34
2165 2461 1.476833 GCTTCCGAATGGCATCCCTAA 60.477 52.381 0.00 0.00 34.14 2.69
2169 2466 0.817013 TTTGCTTCCGAATGGCATCC 59.183 50.000 0.00 0.00 35.84 3.51
2179 2476 0.378962 TGTGTTCGGTTTTGCTTCCG 59.621 50.000 0.00 0.00 46.93 4.30
2191 2488 8.873830 AGACTTATATTGACAAGATTGTGTTCG 58.126 33.333 2.31 0.00 42.43 3.95
2214 2513 5.817816 ACATCCAAATTTCATACTCGGAGAC 59.182 40.000 12.86 0.00 0.00 3.36
2215 2514 5.989477 ACATCCAAATTTCATACTCGGAGA 58.011 37.500 12.86 0.00 0.00 3.71
2218 2517 7.553881 ACTAACATCCAAATTTCATACTCGG 57.446 36.000 0.00 0.00 0.00 4.63
2265 2565 1.228831 TTTGGTGCACCCCAGATGG 60.229 57.895 32.62 0.00 35.49 3.51
2285 2585 3.129813 GGGTTAAAGCCCTAATTCCAACG 59.870 47.826 0.00 0.00 45.22 4.10
2331 2631 6.725364 ACACATGAGACTATGGGATTTTTCT 58.275 36.000 0.00 0.00 35.04 2.52
2348 2648 5.929415 TCTAAAGCATTAACGTGACACATGA 59.071 36.000 6.37 0.00 0.00 3.07
2382 2682 8.581057 TTTTTCACTAGCGCAAAATATTTCAA 57.419 26.923 11.47 0.00 0.00 2.69
2386 2686 8.755696 TTCATTTTTCACTAGCGCAAAATATT 57.244 26.923 11.47 0.00 29.64 1.28
2394 2694 2.908626 CGGTTTCATTTTTCACTAGCGC 59.091 45.455 0.00 0.00 0.00 5.92
2433 2733 6.600246 AATGACATCAACGAGAGATGAATG 57.400 37.500 18.28 1.85 46.17 2.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.