Multiple sequence alignment - TraesCS7B01G310200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G310200 chr7B 100.000 6063 0 0 1 6063 554358963 554365025 0.000000e+00 11197
1 TraesCS7B01G310200 chr7B 88.989 5340 386 71 550 5800 554777777 554783003 0.000000e+00 6418
2 TraesCS7B01G310200 chr7B 89.105 2873 215 48 1227 4054 555216914 555219733 0.000000e+00 3482
3 TraesCS7B01G310200 chr7B 92.492 2131 126 18 756 2866 555417191 555419307 0.000000e+00 3018
4 TraesCS7B01G310200 chr7B 89.571 1352 104 11 3946 5277 555419333 555420667 0.000000e+00 1681
5 TraesCS7B01G310200 chr7B 82.317 1623 209 33 4437 6033 555308249 555309819 0.000000e+00 1336
6 TraesCS7B01G310200 chr7B 100.000 375 0 0 6361 6735 554365323 554365697 0.000000e+00 693
7 TraesCS7B01G310200 chr7B 91.313 495 42 1 1 494 555215572 555216066 0.000000e+00 675
8 TraesCS7B01G310200 chr7B 82.592 787 99 18 5274 6032 555163424 555164200 0.000000e+00 660
9 TraesCS7B01G310200 chr7B 92.180 422 29 4 1 420 555416246 555416665 1.620000e-165 593
10 TraesCS7B01G310200 chr7B 82.725 712 67 21 5369 6032 555420882 555421585 3.500000e-162 582
11 TraesCS7B01G310200 chr7B 80.571 700 94 23 5363 6036 555224861 555225544 1.010000e-137 501
12 TraesCS7B01G310200 chr7B 87.446 231 17 7 490 709 595526978 595526749 8.670000e-64 255
13 TraesCS7B01G310200 chr7B 81.712 257 21 10 5804 6036 555229333 555229587 2.480000e-44 191
14 TraesCS7B01G310200 chr7B 78.231 294 46 13 6379 6660 714333380 714333093 8.980000e-39 172
15 TraesCS7B01G310200 chr7B 86.207 116 8 3 5885 5993 554783029 554783143 1.190000e-22 119
16 TraesCS7B01G310200 chr7A 96.355 6035 157 21 1 5995 599498932 599504943 0.000000e+00 9867
17 TraesCS7B01G310200 chr7A 96.195 6044 165 27 1 5995 598949203 598955230 0.000000e+00 9827
18 TraesCS7B01G310200 chr7A 88.469 4553 360 62 1580 6063 600552789 600557245 0.000000e+00 5347
19 TraesCS7B01G310200 chr7A 88.762 2883 219 50 1227 4054 601466781 601469613 0.000000e+00 3432
20 TraesCS7B01G310200 chr7A 92.860 2269 128 20 615 2866 602020415 602022666 0.000000e+00 3262
21 TraesCS7B01G310200 chr7A 88.626 1354 96 24 3946 5277 602022692 602024009 0.000000e+00 1594
22 TraesCS7B01G310200 chr7A 88.713 1134 89 12 4164 5277 601469614 601470728 0.000000e+00 1349
23 TraesCS7B01G310200 chr7A 88.137 1079 61 13 550 1588 600550919 600551970 0.000000e+00 1221
24 TraesCS7B01G310200 chr7A 90.767 639 25 9 490 1111 601466162 601466783 0.000000e+00 822
25 TraesCS7B01G310200 chr7A 93.133 466 31 1 32 496 601465471 601465936 0.000000e+00 682
26 TraesCS7B01G310200 chr7A 92.874 421 28 2 1 420 602019677 602020096 1.610000e-170 610
27 TraesCS7B01G310200 chr7A 91.192 386 18 3 6361 6731 599505066 599505450 1.680000e-140 510
28 TraesCS7B01G310200 chr7A 90.885 384 20 3 6361 6731 598955347 598955728 1.010000e-137 501
29 TraesCS7B01G310200 chr7A 80.645 279 34 10 5776 6036 601478245 601478521 1.480000e-46 198
30 TraesCS7B01G310200 chr7A 98.810 84 1 0 5980 6063 598955246 598955329 4.210000e-32 150
31 TraesCS7B01G310200 chr7A 97.619 84 2 0 5980 6063 599504959 599505042 1.960000e-30 145
32 TraesCS7B01G310200 chr7D 97.523 4279 87 10 1798 6063 520877092 520881364 0.000000e+00 7297
33 TraesCS7B01G310200 chr7D 88.521 5349 398 70 550 5790 520944208 520949448 0.000000e+00 6277
34 TraesCS7B01G310200 chr7D 92.973 2405 125 22 490 2866 521707407 521709795 0.000000e+00 3465
35 TraesCS7B01G310200 chr7D 95.079 1829 48 12 1 1799 520875194 520877010 0.000000e+00 2841
36 TraesCS7B01G310200 chr7D 86.814 1858 157 35 3954 5770 521709794 521711604 0.000000e+00 1993
37 TraesCS7B01G310200 chr7D 83.529 1621 191 31 4439 6033 521593694 521595264 0.000000e+00 1445
38 TraesCS7B01G310200 chr7D 89.163 1135 83 12 4164 5277 521577302 521578417 0.000000e+00 1378
39 TraesCS7B01G310200 chr7D 85.576 1241 99 39 2865 4054 521576090 521577301 0.000000e+00 1227
40 TraesCS7B01G310200 chr7D 83.131 1233 152 20 4826 6032 521523630 521524832 0.000000e+00 1074
41 TraesCS7B01G310200 chr7D 90.267 637 30 8 491 1111 521570932 521571552 0.000000e+00 804
42 TraesCS7B01G310200 chr7D 91.919 495 39 1 1 494 521557569 521558063 0.000000e+00 691
43 TraesCS7B01G310200 chr7D 92.874 421 28 2 1 420 521706849 521707268 1.610000e-170 610
44 TraesCS7B01G310200 chr7D 92.950 383 14 1 6362 6731 520881385 520881767 4.590000e-151 545
45 TraesCS7B01G310200 chr7D 81.143 700 94 18 5363 6036 521586503 521587190 1.660000e-145 527
46 TraesCS7B01G310200 chr6A 79.197 274 44 11 6379 6641 5292546 5292817 1.930000e-40 178
47 TraesCS7B01G310200 chr6A 77.544 285 46 13 6379 6651 373657638 373657916 9.040000e-34 156
48 TraesCS7B01G310200 chr2A 78.571 294 45 13 6379 6660 601387858 601387571 1.930000e-40 178
49 TraesCS7B01G310200 chr3B 78.596 285 43 13 6379 6651 752398175 752398453 8.980000e-39 172
50 TraesCS7B01G310200 chr5A 77.551 294 48 13 6379 6660 543418668 543418381 1.940000e-35 161


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G310200 chr7B 554358963 554365697 6734 False 5945.000000 11197 100.000000 1 6735 2 chr7B.!!$F3 6734
1 TraesCS7B01G310200 chr7B 554777777 554783143 5366 False 3268.500000 6418 87.598000 550 5993 2 chr7B.!!$F4 5443
2 TraesCS7B01G310200 chr7B 555215572 555219733 4161 False 2078.500000 3482 90.209000 1 4054 2 chr7B.!!$F5 4053
3 TraesCS7B01G310200 chr7B 555416246 555421585 5339 False 1468.500000 3018 89.242000 1 6032 4 chr7B.!!$F7 6031
4 TraesCS7B01G310200 chr7B 555308249 555309819 1570 False 1336.000000 1336 82.317000 4437 6033 1 chr7B.!!$F2 1596
5 TraesCS7B01G310200 chr7B 555163424 555164200 776 False 660.000000 660 82.592000 5274 6032 1 chr7B.!!$F1 758
6 TraesCS7B01G310200 chr7B 555224861 555229587 4726 False 346.000000 501 81.141500 5363 6036 2 chr7B.!!$F6 673
7 TraesCS7B01G310200 chr7A 599498932 599505450 6518 False 3507.333333 9867 95.055333 1 6731 3 chr7A.!!$F3 6730
8 TraesCS7B01G310200 chr7A 598949203 598955728 6525 False 3492.666667 9827 95.296667 1 6731 3 chr7A.!!$F2 6730
9 TraesCS7B01G310200 chr7A 600550919 600557245 6326 False 3284.000000 5347 88.303000 550 6063 2 chr7A.!!$F4 5513
10 TraesCS7B01G310200 chr7A 602019677 602024009 4332 False 1822.000000 3262 91.453333 1 5277 3 chr7A.!!$F6 5276
11 TraesCS7B01G310200 chr7A 601465471 601470728 5257 False 1571.250000 3432 90.343750 32 5277 4 chr7A.!!$F5 5245
12 TraesCS7B01G310200 chr7D 520944208 520949448 5240 False 6277.000000 6277 88.521000 550 5790 1 chr7D.!!$F1 5240
13 TraesCS7B01G310200 chr7D 520875194 520881767 6573 False 3561.000000 7297 95.184000 1 6731 3 chr7D.!!$F7 6730
14 TraesCS7B01G310200 chr7D 521706849 521711604 4755 False 2022.666667 3465 90.887000 1 5770 3 chr7D.!!$F9 5769
15 TraesCS7B01G310200 chr7D 521593694 521595264 1570 False 1445.000000 1445 83.529000 4439 6033 1 chr7D.!!$F6 1594
16 TraesCS7B01G310200 chr7D 521576090 521578417 2327 False 1302.500000 1378 87.369500 2865 5277 2 chr7D.!!$F8 2412
17 TraesCS7B01G310200 chr7D 521523630 521524832 1202 False 1074.000000 1074 83.131000 4826 6032 1 chr7D.!!$F2 1206
18 TraesCS7B01G310200 chr7D 521570932 521571552 620 False 804.000000 804 90.267000 491 1111 1 chr7D.!!$F4 620
19 TraesCS7B01G310200 chr7D 521586503 521587190 687 False 527.000000 527 81.143000 5363 6036 1 chr7D.!!$F5 673

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
261 264 6.213397 AGGGCTTGGAAGTTTTAATTATTGCT 59.787 34.615 0.00 0.00 0.00 3.91 F
1546 2117 0.391661 ATGACGTGAAGCTTGGCGAT 60.392 50.000 21.29 9.18 0.00 4.58 F
3105 4647 0.403655 TGATTGCCACTGCCAACCTA 59.596 50.000 0.00 0.00 36.33 3.08 F
3403 4972 0.105039 GAATCTGGCTCGGATTCGGT 59.895 55.000 16.20 0.00 43.40 4.69 F
4416 6061 1.271054 TGCTTTCTTGGCACTCTCCTC 60.271 52.381 0.00 0.00 34.56 3.71 F
5341 7041 1.055040 ATCTGGTGGATCTAGCAGGC 58.945 55.000 30.41 0.00 44.20 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2116 3626 1.820519 GCATTGCCAGGATGAACTTCA 59.179 47.619 0.00 0.00 39.69 3.02 R
3352 4921 0.966179 TTTGTCCGAGCAGCACTAGA 59.034 50.000 0.00 0.00 0.00 2.43 R
5009 6664 1.423845 GCACCTCGCGTTTGTATGG 59.576 57.895 5.77 1.03 0.00 2.74 R
5341 7041 0.676466 TACCGTCAAGCAGGGCATTG 60.676 55.000 0.00 0.00 32.67 2.82 R
5500 11309 2.301870 TGAAATGCCGTCTAACTGGAGT 59.698 45.455 0.00 0.00 0.00 3.85 R
6371 12392 4.272489 TCCAGCATTTATTCCAAGGACTG 58.728 43.478 0.00 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
181 184 8.408043 TTTCTTGAGGAATCATCTTAAAGCAA 57.592 30.769 0.00 0.00 33.53 3.91
261 264 6.213397 AGGGCTTGGAAGTTTTAATTATTGCT 59.787 34.615 0.00 0.00 0.00 3.91
478 485 7.827819 ATACCCATCATTATTACATCGTTCG 57.172 36.000 0.00 0.00 0.00 3.95
1200 1728 7.437713 AGTAGGTACATCATTTGGATCTGAA 57.562 36.000 0.00 0.00 29.95 3.02
1202 1730 8.328758 AGTAGGTACATCATTTGGATCTGAAAA 58.671 33.333 0.00 0.00 29.95 2.29
1293 1836 6.382282 TCTTCTATCCACAGTCACATCTGATT 59.618 38.462 0.65 0.00 38.63 2.57
1467 2038 8.926710 GGACAATTTATACGTTCTATCCATCAG 58.073 37.037 0.00 0.00 0.00 2.90
1546 2117 0.391661 ATGACGTGAAGCTTGGCGAT 60.392 50.000 21.29 9.18 0.00 4.58
1617 3025 8.191446 AGCTCGTACAACCATCATATATATGTC 58.809 37.037 19.78 3.48 35.26 3.06
1640 3048 5.240844 TCGAGCATTTCCGTAGATCTATGAA 59.759 40.000 21.39 15.97 0.00 2.57
1689 3099 9.368416 GATGCAGTTCCCATATAGGATATAGTA 57.632 37.037 0.00 0.00 41.22 1.82
2116 3626 3.777522 AGGAGCTTGATTTGGTAGTAGCT 59.222 43.478 0.35 0.00 41.31 3.32
2321 3833 4.771577 CCTATGATGAGGCAGTCTCTACAT 59.228 45.833 15.15 15.15 42.86 2.29
2480 3992 4.323751 GTTGAACGCGAATGTCTATTCAC 58.676 43.478 15.93 1.31 42.27 3.18
2942 4479 3.136443 TCATCCTATGCACTTTCCCGAAT 59.864 43.478 0.00 0.00 0.00 3.34
3015 4557 2.358957 CCTTGAAGTTCGATGGCATGA 58.641 47.619 3.81 0.00 0.00 3.07
3105 4647 0.403655 TGATTGCCACTGCCAACCTA 59.596 50.000 0.00 0.00 36.33 3.08
3352 4921 2.346803 CTGCACGTTAAGTACCAGCAT 58.653 47.619 0.00 0.00 34.02 3.79
3403 4972 0.105039 GAATCTGGCTCGGATTCGGT 59.895 55.000 16.20 0.00 43.40 4.69
3490 5083 6.317140 AGAAATTGATGTTACGTGCAGATGAT 59.683 34.615 0.00 0.00 0.00 2.45
3508 5101 7.363268 GCAGATGATTCCTTTTACCAACTCATT 60.363 37.037 0.00 0.00 0.00 2.57
3528 5121 7.087409 TCATTTGCTCATTAACATACAGTGG 57.913 36.000 0.00 0.00 0.00 4.00
3725 5338 2.418368 TGGCAACAGTGTCTGACTTT 57.582 45.000 9.51 0.00 46.17 2.66
3848 5464 2.550830 AAGCTCACACAGTTACTGGG 57.449 50.000 13.69 13.69 41.28 4.45
3928 5550 4.553330 ATGTTTCCACCGTGATACTCTT 57.447 40.909 0.00 0.00 0.00 2.85
4416 6061 1.271054 TGCTTTCTTGGCACTCTCCTC 60.271 52.381 0.00 0.00 34.56 3.71
4457 6104 1.652012 CGGGCGCTTGTTTGAGAAA 59.348 52.632 7.64 0.00 0.00 2.52
4516 6167 8.508062 TCTATTTCAGCGTTGTTATGCTAAAAA 58.492 29.630 0.00 0.00 44.77 1.94
4584 6239 3.743521 TCCCTGTCTTGAATGTTCTGTG 58.256 45.455 0.00 0.00 0.00 3.66
5009 6664 4.241681 GCAGTACTATAATGAGAGCCTGC 58.758 47.826 0.00 2.21 0.00 4.85
5090 6745 5.743117 AGATTTTCATCAACCTGGAGAGAG 58.257 41.667 0.00 0.00 0.00 3.20
5091 6746 5.486775 AGATTTTCATCAACCTGGAGAGAGA 59.513 40.000 0.00 0.00 0.00 3.10
5092 6747 4.815533 TTTCATCAACCTGGAGAGAGAG 57.184 45.455 0.00 0.00 0.00 3.20
5341 7041 1.055040 ATCTGGTGGATCTAGCAGGC 58.945 55.000 30.41 0.00 44.20 4.85
5365 7065 1.538419 GCCCTGCTTGACGGTATAGAC 60.538 57.143 0.00 0.00 0.00 2.59
5367 7067 2.223829 CCCTGCTTGACGGTATAGACAG 60.224 54.545 0.00 0.00 0.00 3.51
5455 11264 5.412904 GGAGAAATTCTTGACGAACCAGATT 59.587 40.000 0.00 0.00 33.72 2.40
5461 11270 2.472695 TGACGAACCAGATTGAAGGG 57.527 50.000 0.00 0.00 0.00 3.95
5500 11309 3.995636 AGGCCTTGAACTAGTGGATCTA 58.004 45.455 0.00 0.00 0.00 1.98
5802 11693 9.436957 AGTAACAATAATAAGACTGGTGAAGTG 57.563 33.333 0.00 0.00 40.07 3.16
6456 12477 0.742281 CAATCTGGGAGCTGGACACG 60.742 60.000 0.00 0.00 0.00 4.49
6526 12560 3.815962 GGTCTTCTCCTTTTGGTTCAGAC 59.184 47.826 0.00 0.00 41.38 3.51
6576 12610 7.361371 GGTCATCGTCATAGATGTAGAGGTAAG 60.361 44.444 6.82 0.00 45.96 2.34
6587 12621 8.251383 AGATGTAGAGGTAAGCAAAAGCTATA 57.749 34.615 0.00 0.00 0.00 1.31
6590 12624 7.265673 TGTAGAGGTAAGCAAAAGCTATACAG 58.734 38.462 12.60 0.00 41.56 2.74
6710 12744 0.595588 TGTTACTGCAATTGCCACCG 59.404 50.000 26.94 14.79 41.18 4.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
239 242 9.076596 CAGTAGCAATAATTAAAACTTCCAAGC 57.923 33.333 0.00 0.00 0.00 4.01
457 464 5.694458 TGACGAACGATGTAATAATGATGGG 59.306 40.000 0.14 0.00 0.00 4.00
478 485 3.304057 GCTTGCTTTTGGTGACTAGTGAC 60.304 47.826 0.00 0.56 0.00 3.67
622 946 0.472925 TAGGCACCCCTGTCACAGAA 60.473 55.000 6.30 0.00 42.90 3.02
1467 2038 4.141779 ACCGTTAATTAGTGGTCCAGATCC 60.142 45.833 0.00 0.00 0.00 3.36
1617 3025 5.048153 TCATAGATCTACGGAAATGCTCG 57.952 43.478 4.10 0.00 0.00 5.03
1984 3494 8.293699 ACTCAAAATTTTGGAGAGTAAACACT 57.706 30.769 26.45 5.30 38.66 3.55
2084 3594 6.071165 ACCAAATCAAGCTCCTCATTTTTAGG 60.071 38.462 0.00 0.00 35.26 2.69
2116 3626 1.820519 GCATTGCCAGGATGAACTTCA 59.179 47.619 0.00 0.00 39.69 3.02
2321 3833 1.548081 CATGTTCCAAGGGTCATGCA 58.452 50.000 0.00 0.00 33.17 3.96
2480 3992 4.641989 CCATAAGAACCAACCCAGATTCTG 59.358 45.833 6.70 6.70 31.82 3.02
2520 4032 1.000938 CAACAGCCTGCAAGAACTTCC 60.001 52.381 0.00 0.00 34.07 3.46
2849 4367 5.614324 ACTAGCATGCATAGGTTGTTAGA 57.386 39.130 21.98 0.00 31.18 2.10
2852 4370 5.745227 ACTAACTAGCATGCATAGGTTGTT 58.255 37.500 21.98 21.17 36.64 2.83
3015 4557 3.795688 ATGACTGGACAGAACAATGGT 57.204 42.857 6.29 0.00 0.00 3.55
3352 4921 0.966179 TTTGTCCGAGCAGCACTAGA 59.034 50.000 0.00 0.00 0.00 2.43
3403 4972 6.083098 TCAAAATCTTGCCGAATCAGAAAA 57.917 33.333 0.00 0.00 32.14 2.29
3508 5101 5.182950 CCAACCACTGTATGTTAATGAGCAA 59.817 40.000 0.00 0.00 0.00 3.91
3528 5121 2.092646 ACCTTTTTCCCTTTTGCCCAAC 60.093 45.455 0.00 0.00 0.00 3.77
3635 5248 7.223387 CACAAAATAAATAGCAGAGGGAAATGC 59.777 37.037 0.00 0.00 42.87 3.56
3738 5353 5.050091 CAGTTCAACAGTGTGGACATAGTTC 60.050 44.000 0.00 0.00 0.00 3.01
3741 5356 4.380531 ACAGTTCAACAGTGTGGACATAG 58.619 43.478 0.00 0.00 37.69 2.23
3742 5357 4.415881 ACAGTTCAACAGTGTGGACATA 57.584 40.909 0.00 0.00 37.69 2.29
3743 5358 3.281727 ACAGTTCAACAGTGTGGACAT 57.718 42.857 0.00 0.00 37.69 3.06
3744 5359 2.746904 CAACAGTTCAACAGTGTGGACA 59.253 45.455 0.00 0.00 39.20 4.02
3745 5360 3.006940 TCAACAGTTCAACAGTGTGGAC 58.993 45.455 0.00 0.00 39.20 4.02
3746 5361 3.342377 TCAACAGTTCAACAGTGTGGA 57.658 42.857 0.00 0.00 39.20 4.02
3747 5362 3.689161 TCTTCAACAGTTCAACAGTGTGG 59.311 43.478 0.00 0.00 39.20 4.17
3807 5423 9.095700 AGCTTTTACTGGGGTATGAATTAAAAA 57.904 29.630 0.00 0.00 0.00 1.94
3848 5464 2.210961 GACCCTTGTATTTAGCGCCTC 58.789 52.381 2.29 0.00 0.00 4.70
3928 5550 7.639113 AAAGAAATAACAAAGGACACACAGA 57.361 32.000 0.00 0.00 0.00 3.41
4144 5766 3.373748 TCGGTGCTAACATGCATAAAGTG 59.626 43.478 0.00 0.00 45.23 3.16
4516 6167 7.119846 AGTGAGCGTAATGAAGAAATTTTAGCT 59.880 33.333 0.00 0.00 0.00 3.32
4584 6239 4.161333 GTGTTTCTGCATCACAATACAGC 58.839 43.478 0.00 0.00 33.04 4.40
5009 6664 1.423845 GCACCTCGCGTTTGTATGG 59.576 57.895 5.77 1.03 0.00 2.74
5341 7041 0.676466 TACCGTCAAGCAGGGCATTG 60.676 55.000 0.00 0.00 32.67 2.82
5500 11309 2.301870 TGAAATGCCGTCTAACTGGAGT 59.698 45.455 0.00 0.00 0.00 3.85
5507 11316 2.354704 CCTCTGGTGAAATGCCGTCTAA 60.355 50.000 0.00 0.00 0.00 2.10
5630 11448 4.082523 ATCAGACACCGGGGCGTG 62.083 66.667 1.73 0.14 39.75 5.34
5802 11693 5.997843 TCCCTAGGAACCTTTATTGCTTAC 58.002 41.667 11.48 0.00 31.94 2.34
6364 12385 6.683861 GCATTTATTCCAAGGACTGAAATCCC 60.684 42.308 0.00 0.00 39.91 3.85
6371 12392 4.272489 TCCAGCATTTATTCCAAGGACTG 58.728 43.478 0.00 0.00 0.00 3.51
6379 12400 6.809869 AGTTTAGCAATCCAGCATTTATTCC 58.190 36.000 0.00 0.00 36.85 3.01
6495 12529 4.779993 AAAGGAGAAGACCAGAACAACT 57.220 40.909 0.00 0.00 0.00 3.16
6526 12560 4.574828 CACTCCAAATAATCCCCACGTTAG 59.425 45.833 0.00 0.00 0.00 2.34
6587 12621 8.396272 ACTTTCTGTAAATTTGTATCAGCTGT 57.604 30.769 14.67 3.75 0.00 4.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.