Multiple sequence alignment - TraesCS7B01G310000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G310000 chr7B 100.000 4337 0 0 1 4337 554188914 554184578 0.000000e+00 8010.0
1 TraesCS7B01G310000 chr7B 86.890 1106 81 18 2352 3413 201455379 201456464 0.000000e+00 1181.0
2 TraesCS7B01G310000 chr7B 90.116 172 5 3 3421 3580 554177516 554177345 3.400000e-51 213.0
3 TraesCS7B01G310000 chr7D 92.223 2083 123 16 745 2820 520857749 520855699 0.000000e+00 2913.0
4 TraesCS7B01G310000 chr7D 90.344 756 43 15 1 743 520860682 520859944 0.000000e+00 965.0
5 TraesCS7B01G310000 chr7A 88.693 1079 101 5 952 2024 598293487 598292424 0.000000e+00 1297.0
6 TraesCS7B01G310000 chr7A 91.582 594 27 10 168 746 598349436 598348851 0.000000e+00 798.0
7 TraesCS7B01G310000 chr7A 84.941 850 55 34 2613 3415 598259765 598258942 0.000000e+00 793.0
8 TraesCS7B01G310000 chr7A 89.906 426 43 0 2138 2563 598292375 598291950 2.280000e-152 549.0
9 TraesCS7B01G310000 chr7A 88.525 122 8 3 1 119 598349552 598349434 4.520000e-30 143.0
10 TraesCS7B01G310000 chr2B 87.817 829 69 9 1752 2577 532546024 532546823 0.000000e+00 942.0
11 TraesCS7B01G310000 chr2B 92.718 412 25 4 3578 3988 72932958 72933365 1.340000e-164 590.0
12 TraesCS7B01G310000 chr2B 94.955 337 8 5 4001 4337 480005677 480006004 1.790000e-143 520.0
13 TraesCS7B01G310000 chr2B 76.974 152 20 8 3421 3558 446028693 446028843 6.020000e-09 73.1
14 TraesCS7B01G310000 chr3D 93.240 429 20 6 3562 3988 460456434 460456013 1.320000e-174 623.0
15 TraesCS7B01G310000 chr3D 94.955 337 7 6 3999 4333 418384885 418384557 1.790000e-143 520.0
16 TraesCS7B01G310000 chr1D 93.976 415 20 3 3578 3988 492910619 492911032 1.320000e-174 623.0
17 TraesCS7B01G310000 chr1D 98.142 323 5 1 4015 4337 492911433 492911754 2.930000e-156 562.0
18 TraesCS7B01G310000 chr1D 95.251 358 10 4 3986 4337 492912157 492912513 1.050000e-155 560.0
19 TraesCS7B01G310000 chr5B 93.674 411 21 3 3580 3988 75080137 75080544 1.030000e-170 610.0
20 TraesCS7B01G310000 chr5B 92.910 409 22 3 3580 3988 108857099 108857500 4.830000e-164 588.0
21 TraesCS7B01G310000 chr5B 94.955 337 8 5 4001 4337 67028854 67028527 1.790000e-143 520.0
22 TraesCS7B01G310000 chr5B 94.925 335 9 4 4001 4335 75080633 75080959 6.430000e-143 518.0
23 TraesCS7B01G310000 chr4B 92.736 413 25 4 3580 3988 592710093 592709682 3.740000e-165 592.0
24 TraesCS7B01G310000 chr4D 92.910 409 24 2 3580 3988 14575582 14575179 1.340000e-164 590.0
25 TraesCS7B01G310000 chr6D 92.665 409 28 2 3580 3988 429979331 429978925 4.830000e-164 588.0
26 TraesCS7B01G310000 chr6D 95.170 352 13 2 3986 4333 429978836 429978485 1.760000e-153 553.0
27 TraesCS7B01G310000 chr6D 86.364 66 9 0 3489 3554 22083355 22083420 6.020000e-09 73.1
28 TraesCS7B01G310000 chr3A 92.289 415 27 3 3576 3988 304206406 304205995 6.250000e-163 584.0
29 TraesCS7B01G310000 chr6B 94.721 341 9 5 3997 4337 678821098 678821429 4.970000e-144 521.0
30 TraesCS7B01G310000 chr3B 93.593 359 8 7 3985 4337 151117628 151117279 4.970000e-144 521.0
31 TraesCS7B01G310000 chr3B 87.719 171 9 1 3420 3578 44207471 44207641 5.730000e-44 189.0
32 TraesCS7B01G310000 chr3B 87.647 170 9 1 3421 3578 44212651 44212820 2.060000e-43 187.0
33 TraesCS7B01G310000 chr5D 84.884 172 14 5 3421 3580 339115429 339115600 3.470000e-36 163.0
34 TraesCS7B01G310000 chr5D 84.884 172 14 3 3421 3580 339120302 339120473 3.470000e-36 163.0
35 TraesCS7B01G310000 chr1B 81.609 174 16 7 3421 3580 98468365 98468194 3.520000e-26 130.0
36 TraesCS7B01G310000 chr1B 87.629 97 8 4 3479 3572 98463432 98463337 4.590000e-20 110.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G310000 chr7B 554184578 554188914 4336 True 8010.000000 8010 100.000000 1 4337 1 chr7B.!!$R2 4336
1 TraesCS7B01G310000 chr7B 201455379 201456464 1085 False 1181.000000 1181 86.890000 2352 3413 1 chr7B.!!$F1 1061
2 TraesCS7B01G310000 chr7D 520855699 520860682 4983 True 1939.000000 2913 91.283500 1 2820 2 chr7D.!!$R1 2819
3 TraesCS7B01G310000 chr7A 598291950 598293487 1537 True 923.000000 1297 89.299500 952 2563 2 chr7A.!!$R2 1611
4 TraesCS7B01G310000 chr7A 598258942 598259765 823 True 793.000000 793 84.941000 2613 3415 1 chr7A.!!$R1 802
5 TraesCS7B01G310000 chr7A 598348851 598349552 701 True 470.500000 798 90.053500 1 746 2 chr7A.!!$R3 745
6 TraesCS7B01G310000 chr2B 532546024 532546823 799 False 942.000000 942 87.817000 1752 2577 1 chr2B.!!$F4 825
7 TraesCS7B01G310000 chr1D 492910619 492912513 1894 False 581.666667 623 95.789667 3578 4337 3 chr1D.!!$F1 759
8 TraesCS7B01G310000 chr5B 75080137 75080959 822 False 564.000000 610 94.299500 3580 4335 2 chr5B.!!$F2 755
9 TraesCS7B01G310000 chr6D 429978485 429979331 846 True 570.500000 588 93.917500 3580 4333 2 chr6D.!!$R1 753

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 3047 0.103208 CCCTCTCCACGTACTGCATC 59.897 60.0 0.00 0.00 0.00 3.91 F
838 3052 0.108662 TCCACGTACTGCATCAGCTG 60.109 55.0 7.63 7.63 44.36 4.24 F
2650 4884 0.112995 TCCAGCAAGGAAGCAATGGT 59.887 50.0 0.00 0.00 45.65 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1765 3987 0.861837 GTGAAGGTGAGTTGCAGACG 59.138 55.000 0.00 0.0 0.00 4.18 R
2835 5069 1.277557 ACCTGAGCGAAGAAGAGCATT 59.722 47.619 0.00 0.0 35.48 3.56 R
4229 7660 0.028110 GTCCAGATTTGATTCGCGGC 59.972 55.000 6.13 0.0 0.00 6.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
50 51 6.441093 TTGAATCAATATGTCCTCTGTTGC 57.559 37.500 0.00 0.00 0.00 4.17
67 71 2.780065 TGCTTGAGTGCATTGTTGTC 57.220 45.000 0.00 0.00 38.12 3.18
97 101 6.150976 CAGTTTGGGATGATGTTAAGCAAGTA 59.849 38.462 0.00 0.00 0.00 2.24
98 102 6.719370 AGTTTGGGATGATGTTAAGCAAGTAA 59.281 34.615 0.00 0.00 0.00 2.24
99 103 7.232534 AGTTTGGGATGATGTTAAGCAAGTAAA 59.767 33.333 0.00 0.00 0.00 2.01
131 135 5.053145 TGCCATTGTTGATTGTAAAACACC 58.947 37.500 0.00 0.00 36.08 4.16
136 140 4.930963 TGTTGATTGTAAAACACCTGCTG 58.069 39.130 0.00 0.00 31.52 4.41
137 141 3.641437 TGATTGTAAAACACCTGCTGC 57.359 42.857 0.00 0.00 0.00 5.25
144 148 0.316204 AAACACCTGCTGCTCATTGC 59.684 50.000 0.00 0.00 43.25 3.56
147 151 3.197614 CCTGCTGCTCATTGCTGG 58.802 61.111 0.00 0.00 43.37 4.85
150 154 0.601558 CTGCTGCTCATTGCTGGTTT 59.398 50.000 0.00 0.00 43.37 3.27
151 155 1.814394 CTGCTGCTCATTGCTGGTTTA 59.186 47.619 0.00 0.00 43.37 2.01
152 156 2.426024 CTGCTGCTCATTGCTGGTTTAT 59.574 45.455 0.00 0.00 43.37 1.40
153 157 2.164827 TGCTGCTCATTGCTGGTTTATG 59.835 45.455 0.00 0.00 43.37 1.90
154 158 2.805845 CTGCTCATTGCTGGTTTATGC 58.194 47.619 0.00 0.00 43.37 3.14
207 211 8.210946 TCTCTAGTTTCTGATTGAAAAACCTGA 58.789 33.333 0.00 0.00 45.10 3.86
240 244 1.475280 CAGGTTTGGCATCTGATGGTG 59.525 52.381 18.60 0.00 0.00 4.17
305 310 1.351350 AGAACTTAAGGTCACCCTGGC 59.649 52.381 22.29 0.00 41.56 4.85
341 346 4.838152 TTCATCTCGGGCGGCAGC 62.838 66.667 12.47 0.00 44.18 5.25
405 410 1.659035 ATGGAAGGAAGGGATGGGGC 61.659 60.000 0.00 0.00 0.00 5.80
458 464 0.753848 CGTCTTCTCCTCCCTCCCTC 60.754 65.000 0.00 0.00 0.00 4.30
480 490 0.673985 GTGGCCTTTTGGTTGAGTCC 59.326 55.000 3.32 0.00 42.99 3.85
550 560 2.004583 GCCTTTTATCCGTTTTGGCC 57.995 50.000 0.00 0.00 37.80 5.36
584 594 6.183361 GGGGTAGAAACATGTATGTAGGCTTA 60.183 42.308 0.00 0.00 40.80 3.09
585 595 7.277396 GGGTAGAAACATGTATGTAGGCTTAA 58.723 38.462 0.00 0.00 40.80 1.85
586 596 7.771826 GGGTAGAAACATGTATGTAGGCTTAAA 59.228 37.037 0.00 0.00 40.80 1.52
622 632 6.095377 GCTTGAAAACCTGATAACATCTTGG 58.905 40.000 0.00 0.00 0.00 3.61
671 691 0.609957 CCCCTGAATTCAGTGCTGCA 60.610 55.000 29.03 0.00 42.27 4.41
726 746 6.913170 TGTGAGTTCCTTCATTTTAGATTGC 58.087 36.000 0.00 0.00 0.00 3.56
759 2972 1.859427 TTTGGAGTCGGAGTCGTCGG 61.859 60.000 6.74 0.00 37.69 4.79
769 2982 2.024871 GTCGTCGGGCTCAGATCG 59.975 66.667 0.00 0.00 0.00 3.69
775 2988 2.110006 GGGCTCAGATCGCTTCCC 59.890 66.667 1.39 1.39 0.00 3.97
786 2999 2.125633 GCTTCCCGTCCGACTTCC 60.126 66.667 0.00 0.00 0.00 3.46
789 3002 1.228644 TTCCCGTCCGACTTCCTCA 60.229 57.895 0.00 0.00 0.00 3.86
791 3004 1.677966 CCCGTCCGACTTCCTCAGA 60.678 63.158 0.00 0.00 0.00 3.27
797 3010 2.103373 TCCGACTTCCTCAGATTCCAG 58.897 52.381 0.00 0.00 0.00 3.86
812 3026 0.748367 TCCAGTCTGAGTCGGATCGG 60.748 60.000 4.63 8.92 0.00 4.18
813 3027 1.729470 CCAGTCTGAGTCGGATCGGG 61.729 65.000 4.63 5.76 0.00 5.14
814 3028 2.122167 AGTCTGAGTCGGATCGGGC 61.122 63.158 4.63 0.00 0.00 6.13
815 3029 2.833582 TCTGAGTCGGATCGGGCC 60.834 66.667 0.00 0.00 0.00 5.80
816 3030 3.917760 CTGAGTCGGATCGGGCCC 61.918 72.222 13.57 13.57 0.00 5.80
817 3031 4.458829 TGAGTCGGATCGGGCCCT 62.459 66.667 22.43 0.00 0.00 5.19
818 3032 3.607661 GAGTCGGATCGGGCCCTC 61.608 72.222 22.43 11.86 0.00 4.30
819 3033 4.144727 AGTCGGATCGGGCCCTCT 62.145 66.667 22.43 6.41 0.00 3.69
821 3035 4.916314 TCGGATCGGGCCCTCTCC 62.916 72.222 22.43 23.10 0.00 3.71
824 3038 3.917760 GATCGGGCCCTCTCCACG 61.918 72.222 22.43 4.31 0.00 4.94
826 3040 3.369410 ATCGGGCCCTCTCCACGTA 62.369 63.158 22.43 0.00 0.00 3.57
827 3041 3.834799 CGGGCCCTCTCCACGTAC 61.835 72.222 22.43 0.00 0.00 3.67
828 3042 2.363925 GGGCCCTCTCCACGTACT 60.364 66.667 17.04 0.00 0.00 2.73
829 3043 2.722201 GGGCCCTCTCCACGTACTG 61.722 68.421 17.04 0.00 0.00 2.74
830 3044 2.184579 GCCCTCTCCACGTACTGC 59.815 66.667 0.00 0.00 0.00 4.40
831 3045 2.646175 GCCCTCTCCACGTACTGCA 61.646 63.158 0.00 0.00 0.00 4.41
833 3047 0.103208 CCCTCTCCACGTACTGCATC 59.897 60.000 0.00 0.00 0.00 3.91
834 3048 0.817654 CCTCTCCACGTACTGCATCA 59.182 55.000 0.00 0.00 0.00 3.07
835 3049 1.202348 CCTCTCCACGTACTGCATCAG 60.202 57.143 0.00 0.00 37.52 2.90
836 3050 0.173481 TCTCCACGTACTGCATCAGC 59.827 55.000 0.00 0.00 42.57 4.26
837 3051 0.174389 CTCCACGTACTGCATCAGCT 59.826 55.000 0.00 0.00 42.74 4.24
838 3052 0.108662 TCCACGTACTGCATCAGCTG 60.109 55.000 7.63 7.63 44.36 4.24
856 3070 9.242477 CATCAGCTGCATACATATATGTACTAC 57.758 37.037 24.43 17.31 45.11 2.73
857 3071 8.348285 TCAGCTGCATACATATATGTACTACA 57.652 34.615 24.43 20.12 45.11 2.74
858 3072 8.244113 TCAGCTGCATACATATATGTACTACAC 58.756 37.037 24.43 15.25 45.11 2.90
859 3073 7.218963 CAGCTGCATACATATATGTACTACACG 59.781 40.741 24.43 16.30 45.11 4.49
916 3130 2.165301 CGCACGTAGGCTTGGCTAC 61.165 63.158 20.08 20.08 0.00 3.58
934 3150 3.498777 GCTACCTCCAAGTGTTTCTCAAC 59.501 47.826 0.00 0.00 0.00 3.18
941 3157 3.486875 CCAAGTGTTTCTCAACCAACGAC 60.487 47.826 0.00 0.00 31.02 4.34
954 3170 1.226974 AACGACGATCCATCAGGCG 60.227 57.895 0.00 5.48 37.67 5.52
982 3198 1.006825 CATCGTTCGCCACTTCGTCA 61.007 55.000 0.00 0.00 0.00 4.35
984 3200 2.372690 CGTTCGCCACTTCGTCAGG 61.373 63.158 0.00 0.00 0.00 3.86
1134 3350 4.766088 GCCTACGTCGACGCCGTT 62.766 66.667 35.92 20.06 44.43 4.44
1161 3377 3.770040 CCCGTCCACGAGATGCCA 61.770 66.667 0.00 0.00 43.02 4.92
1257 3473 2.681778 CTCACCCTCCTCTGCCGT 60.682 66.667 0.00 0.00 0.00 5.68
1327 3549 2.796193 CCGGATCCTCGGCATGTGA 61.796 63.158 10.75 0.00 43.71 3.58
1370 3592 2.103094 TCAGATCTTACAATGGCCTCCG 59.897 50.000 3.32 0.00 0.00 4.63
1403 3625 1.541147 CACGTACTTCCGGTACCTCAA 59.459 52.381 10.90 1.16 45.76 3.02
1407 3629 1.553706 ACTTCCGGTACCTCAACGAT 58.446 50.000 10.90 0.00 0.00 3.73
1551 3773 3.437795 GACCTCCTCCGCGAACGA 61.438 66.667 8.23 0.00 43.93 3.85
1661 3883 4.590487 GGCCGACGACATGAAAGA 57.410 55.556 0.00 0.00 0.00 2.52
1679 3901 3.691342 CGTCCTCGCCACCTTGGA 61.691 66.667 0.00 0.00 40.96 3.53
1765 3987 4.148825 ATCGCACGGTCTGCTCCC 62.149 66.667 0.00 0.00 44.64 4.30
2012 4234 2.531206 GCACATCGAGTACCTCAAGAC 58.469 52.381 0.00 0.00 0.00 3.01
2249 4473 3.760035 GCTTCGCCTCGAGGTCCA 61.760 66.667 31.43 13.70 37.14 4.02
2347 4571 0.578683 CAACCGCTGCGACATATCTG 59.421 55.000 25.45 6.36 0.00 2.90
2589 4820 3.141488 CTAGGACGCCGGTGCTCT 61.141 66.667 16.69 15.02 41.47 4.09
2650 4884 0.112995 TCCAGCAAGGAAGCAATGGT 59.887 50.000 0.00 0.00 45.65 3.55
2875 5116 2.183445 TGGGAGGAGAAGAGACCCA 58.817 57.895 0.00 0.00 46.74 4.51
2888 5134 1.525077 GACCCAACAACACCGAGCA 60.525 57.895 0.00 0.00 0.00 4.26
2894 5140 0.748005 AACAACACCGAGCAGTGCTT 60.748 50.000 20.80 0.00 39.88 3.91
2896 5142 1.146041 AACACCGAGCAGTGCTTCA 59.854 52.632 20.80 0.00 39.88 3.02
2899 5145 1.005630 ACCGAGCAGTGCTTCAGTC 60.006 57.895 20.80 5.07 39.88 3.51
2901 5147 0.735632 CCGAGCAGTGCTTCAGTCTC 60.736 60.000 20.80 3.47 39.88 3.36
2902 5148 0.243365 CGAGCAGTGCTTCAGTCTCT 59.757 55.000 20.80 0.00 39.88 3.10
2914 5160 1.891150 TCAGTCTCTGGGTTCGTTACC 59.109 52.381 1.50 1.50 46.99 2.85
2937 5183 1.679153 GACAGAGAATCGGAGGTCTCC 59.321 57.143 14.59 6.94 46.18 3.71
2955 5201 2.530151 TTCTGCTGTCCCCTGCCT 60.530 61.111 0.00 0.00 34.87 4.75
3011 5257 6.404712 GCGACTTGCAATTACTACTACTTT 57.595 37.500 0.00 0.00 45.45 2.66
3012 5258 7.515957 GCGACTTGCAATTACTACTACTTTA 57.484 36.000 0.00 0.00 45.45 1.85
3013 5259 7.956558 GCGACTTGCAATTACTACTACTTTAA 58.043 34.615 0.00 0.00 45.45 1.52
3014 5260 7.896782 GCGACTTGCAATTACTACTACTTTAAC 59.103 37.037 0.00 0.00 45.45 2.01
3043 5289 4.809673 CTCTTGGTATTTTTGGGCTGTTC 58.190 43.478 0.00 0.00 0.00 3.18
3044 5290 4.479158 TCTTGGTATTTTTGGGCTGTTCT 58.521 39.130 0.00 0.00 0.00 3.01
3089 5335 8.052621 TGTATATAACTGGATTAAGGGGCTTT 57.947 34.615 0.00 0.00 0.00 3.51
3146 5392 9.600646 GCTTTAACTAACTGAACAATCTCTTTC 57.399 33.333 0.00 0.00 0.00 2.62
3162 5408 4.680237 TCTTCACGTGCAGGGCGG 62.680 66.667 15.25 0.08 0.00 6.13
3184 5430 0.031857 CACCATTTGCGAGTTTGGCA 59.968 50.000 0.00 0.00 38.93 4.92
3186 5432 1.337074 ACCATTTGCGAGTTTGGCATG 60.337 47.619 0.00 0.00 40.62 4.06
3192 5438 2.499197 TGCGAGTTTGGCATGAGTAAA 58.501 42.857 0.00 0.00 35.04 2.01
3213 5467 1.462731 TTGTGCATCCACCTGTTGGC 61.463 55.000 0.00 0.00 46.47 4.52
3228 5482 2.740055 GGCCTGCATATCGGAGCG 60.740 66.667 0.00 0.00 0.00 5.03
3229 5483 2.340078 GCCTGCATATCGGAGCGA 59.660 61.111 0.00 0.00 41.13 4.93
3263 5519 1.566018 GGAAAGACACGTCCGCTTGG 61.566 60.000 0.00 0.00 0.00 3.61
3321 5593 1.135083 GTAGACACGGTGATGACCCAG 60.135 57.143 16.29 0.00 39.39 4.45
3322 5594 0.541998 AGACACGGTGATGACCCAGA 60.542 55.000 16.29 0.00 39.39 3.86
3346 5631 4.170723 GCGCTTAACGAGAGCTGT 57.829 55.556 0.00 0.00 46.32 4.40
3379 5664 2.500098 CCTGGACAAGAACCTTCGGATA 59.500 50.000 0.00 0.00 0.00 2.59
3388 5673 2.918712 ACCTTCGGATAATGAGCCTG 57.081 50.000 0.00 0.00 0.00 4.85
3415 5700 4.121317 GAGATCAAGATGTCCTCAAGCAG 58.879 47.826 0.00 0.00 0.00 4.24
3416 5701 2.105006 TCAAGATGTCCTCAAGCAGC 57.895 50.000 0.00 0.00 0.00 5.25
3417 5702 0.725686 CAAGATGTCCTCAAGCAGCG 59.274 55.000 0.00 0.00 0.00 5.18
3418 5703 0.392193 AAGATGTCCTCAAGCAGCGG 60.392 55.000 0.00 0.00 0.00 5.52
3419 5704 1.817099 GATGTCCTCAAGCAGCGGG 60.817 63.158 0.00 0.00 0.00 6.13
3420 5705 2.244117 GATGTCCTCAAGCAGCGGGA 62.244 60.000 0.00 0.00 0.00 5.14
3421 5706 2.125350 GTCCTCAAGCAGCGGGAG 60.125 66.667 8.87 8.87 0.00 4.30
3422 5707 2.604686 TCCTCAAGCAGCGGGAGT 60.605 61.111 13.33 0.00 0.00 3.85
3423 5708 2.217038 TCCTCAAGCAGCGGGAGTT 61.217 57.895 13.33 0.00 0.00 3.01
3424 5709 2.037136 CCTCAAGCAGCGGGAGTTG 61.037 63.158 13.33 1.10 44.54 3.16
3425 5710 2.032528 TCAAGCAGCGGGAGTTGG 59.967 61.111 0.00 0.00 41.76 3.77
3426 5711 2.032528 CAAGCAGCGGGAGTTGGA 59.967 61.111 0.00 0.00 41.76 3.53
3427 5712 2.037136 CAAGCAGCGGGAGTTGGAG 61.037 63.158 0.00 0.00 41.76 3.86
3428 5713 2.217038 AAGCAGCGGGAGTTGGAGA 61.217 57.895 0.00 0.00 41.76 3.71
3429 5714 2.125350 GCAGCGGGAGTTGGAGAG 60.125 66.667 0.00 0.00 41.76 3.20
3430 5715 2.125350 CAGCGGGAGTTGGAGAGC 60.125 66.667 0.00 0.00 37.43 4.09
3431 5716 2.284258 AGCGGGAGTTGGAGAGCT 60.284 61.111 0.00 0.00 0.00 4.09
3432 5717 2.185608 GCGGGAGTTGGAGAGCTC 59.814 66.667 5.27 5.27 0.00 4.09
3433 5718 2.650116 GCGGGAGTTGGAGAGCTCA 61.650 63.158 17.77 0.00 33.66 4.26
3434 5719 1.975327 CGGGAGTTGGAGAGCTCAA 59.025 57.895 17.77 0.00 33.66 3.02
3435 5720 0.539051 CGGGAGTTGGAGAGCTCAAT 59.461 55.000 17.77 0.00 33.66 2.57
3436 5721 1.065854 CGGGAGTTGGAGAGCTCAATT 60.066 52.381 17.77 0.00 33.66 2.32
3437 5722 2.363683 GGGAGTTGGAGAGCTCAATTG 58.636 52.381 17.77 0.00 33.66 2.32
3438 5723 2.290577 GGGAGTTGGAGAGCTCAATTGT 60.291 50.000 17.77 0.00 33.66 2.71
3439 5724 3.055094 GGGAGTTGGAGAGCTCAATTGTA 60.055 47.826 17.77 0.00 33.66 2.41
3440 5725 4.384647 GGGAGTTGGAGAGCTCAATTGTAT 60.385 45.833 17.77 0.00 33.66 2.29
3441 5726 5.189180 GGAGTTGGAGAGCTCAATTGTATT 58.811 41.667 17.77 0.00 33.66 1.89
3442 5727 5.295540 GGAGTTGGAGAGCTCAATTGTATTC 59.704 44.000 17.77 1.34 33.66 1.75
3443 5728 5.809001 AGTTGGAGAGCTCAATTGTATTCA 58.191 37.500 17.77 0.00 0.00 2.57
3444 5729 5.645497 AGTTGGAGAGCTCAATTGTATTCAC 59.355 40.000 17.77 0.00 0.00 3.18
3445 5730 5.426689 TGGAGAGCTCAATTGTATTCACT 57.573 39.130 17.77 0.00 0.00 3.41
3446 5731 5.181009 TGGAGAGCTCAATTGTATTCACTG 58.819 41.667 17.77 0.00 0.00 3.66
3447 5732 4.034975 GGAGAGCTCAATTGTATTCACTGC 59.965 45.833 17.77 1.48 0.00 4.40
3448 5733 4.841422 AGAGCTCAATTGTATTCACTGCT 58.159 39.130 17.77 4.01 0.00 4.24
3449 5734 4.874966 AGAGCTCAATTGTATTCACTGCTC 59.125 41.667 17.77 11.57 43.01 4.26
3450 5735 4.582869 AGCTCAATTGTATTCACTGCTCA 58.417 39.130 5.13 0.00 0.00 4.26
3451 5736 5.005740 AGCTCAATTGTATTCACTGCTCAA 58.994 37.500 5.13 0.00 0.00 3.02
3452 5737 5.091431 GCTCAATTGTATTCACTGCTCAAC 58.909 41.667 5.13 0.00 0.00 3.18
3453 5738 5.335113 GCTCAATTGTATTCACTGCTCAACA 60.335 40.000 5.13 0.00 0.00 3.33
3454 5739 6.631971 TCAATTGTATTCACTGCTCAACAA 57.368 33.333 5.13 0.00 0.00 2.83
3455 5740 7.218228 TCAATTGTATTCACTGCTCAACAAT 57.782 32.000 5.13 0.00 38.75 2.71
3456 5741 7.085746 TCAATTGTATTCACTGCTCAACAATG 58.914 34.615 5.13 0.00 37.55 2.82
3457 5742 6.579666 ATTGTATTCACTGCTCAACAATGT 57.420 33.333 0.00 0.00 36.49 2.71
3458 5743 6.389830 TTGTATTCACTGCTCAACAATGTT 57.610 33.333 0.00 0.00 0.00 2.71
3459 5744 7.503521 TTGTATTCACTGCTCAACAATGTTA 57.496 32.000 0.00 0.00 0.00 2.41
3460 5745 6.898041 TGTATTCACTGCTCAACAATGTTAC 58.102 36.000 0.00 0.00 0.00 2.50
3461 5746 6.484977 TGTATTCACTGCTCAACAATGTTACA 59.515 34.615 0.00 0.00 29.42 2.41
3462 5747 5.826601 TTCACTGCTCAACAATGTTACAA 57.173 34.783 0.00 0.00 0.00 2.41
3463 5748 5.826601 TCACTGCTCAACAATGTTACAAA 57.173 34.783 0.00 0.00 0.00 2.83
3464 5749 5.820131 TCACTGCTCAACAATGTTACAAAG 58.180 37.500 0.00 0.00 0.00 2.77
3465 5750 5.356751 TCACTGCTCAACAATGTTACAAAGT 59.643 36.000 0.00 0.00 0.00 2.66
3466 5751 6.540551 TCACTGCTCAACAATGTTACAAAGTA 59.459 34.615 0.00 0.00 0.00 2.24
3467 5752 6.632834 CACTGCTCAACAATGTTACAAAGTAC 59.367 38.462 0.00 0.00 0.00 2.73
3468 5753 6.317642 ACTGCTCAACAATGTTACAAAGTACA 59.682 34.615 0.00 0.00 0.00 2.90
3469 5754 7.089770 TGCTCAACAATGTTACAAAGTACAA 57.910 32.000 0.00 0.00 0.00 2.41
3470 5755 6.970043 TGCTCAACAATGTTACAAAGTACAAC 59.030 34.615 0.00 0.00 0.00 3.32
3471 5756 6.970043 GCTCAACAATGTTACAAAGTACAACA 59.030 34.615 0.00 0.00 36.66 3.33
3472 5757 7.647715 GCTCAACAATGTTACAAAGTACAACAT 59.352 33.333 0.00 0.00 43.01 2.71
3477 5762 9.555727 ACAATGTTACAAAGTACAACATAGAGT 57.444 29.630 8.45 6.12 40.94 3.24
3478 5763 9.811655 CAATGTTACAAAGTACAACATAGAGTG 57.188 33.333 8.45 1.71 40.94 3.51
3479 5764 9.772973 AATGTTACAAAGTACAACATAGAGTGA 57.227 29.630 8.45 0.00 40.94 3.41
3480 5765 8.812147 TGTTACAAAGTACAACATAGAGTGAG 57.188 34.615 0.00 0.00 0.00 3.51
3481 5766 7.384115 TGTTACAAAGTACAACATAGAGTGAGC 59.616 37.037 0.00 0.00 0.00 4.26
3482 5767 6.102897 ACAAAGTACAACATAGAGTGAGCT 57.897 37.500 0.00 0.00 0.00 4.09
3483 5768 7.228314 ACAAAGTACAACATAGAGTGAGCTA 57.772 36.000 0.00 0.00 0.00 3.32
3484 5769 7.667557 ACAAAGTACAACATAGAGTGAGCTAA 58.332 34.615 0.00 0.00 0.00 3.09
3485 5770 7.599245 ACAAAGTACAACATAGAGTGAGCTAAC 59.401 37.037 0.00 0.00 0.00 2.34
3486 5771 6.835819 AGTACAACATAGAGTGAGCTAACA 57.164 37.500 3.43 0.00 0.00 2.41
3487 5772 7.411486 AGTACAACATAGAGTGAGCTAACAT 57.589 36.000 3.43 0.00 0.00 2.71
3488 5773 7.841956 AGTACAACATAGAGTGAGCTAACATT 58.158 34.615 3.43 0.00 0.00 2.71
3489 5774 7.976734 AGTACAACATAGAGTGAGCTAACATTC 59.023 37.037 3.43 0.00 0.00 2.67
3490 5775 6.109359 ACAACATAGAGTGAGCTAACATTCC 58.891 40.000 3.43 0.00 0.00 3.01
3491 5776 6.070538 ACAACATAGAGTGAGCTAACATTCCT 60.071 38.462 3.43 0.00 0.00 3.36
3492 5777 7.124298 ACAACATAGAGTGAGCTAACATTCCTA 59.876 37.037 3.43 0.03 0.00 2.94
3493 5778 7.661536 ACATAGAGTGAGCTAACATTCCTAA 57.338 36.000 3.43 0.00 0.00 2.69
3494 5779 8.079211 ACATAGAGTGAGCTAACATTCCTAAA 57.921 34.615 3.43 0.00 0.00 1.85
3495 5780 8.540388 ACATAGAGTGAGCTAACATTCCTAAAA 58.460 33.333 3.43 0.00 0.00 1.52
3496 5781 9.383519 CATAGAGTGAGCTAACATTCCTAAAAA 57.616 33.333 3.43 0.00 0.00 1.94
3497 5782 7.674471 AGAGTGAGCTAACATTCCTAAAAAC 57.326 36.000 3.43 0.00 0.00 2.43
3498 5783 7.224297 AGAGTGAGCTAACATTCCTAAAAACA 58.776 34.615 3.43 0.00 0.00 2.83
3499 5784 7.719633 AGAGTGAGCTAACATTCCTAAAAACAA 59.280 33.333 3.43 0.00 0.00 2.83
3500 5785 7.875971 AGTGAGCTAACATTCCTAAAAACAAG 58.124 34.615 3.43 0.00 0.00 3.16
3501 5786 7.040409 AGTGAGCTAACATTCCTAAAAACAAGG 60.040 37.037 3.43 0.00 35.26 3.61
3502 5787 6.025749 AGCTAACATTCCTAAAAACAAGGC 57.974 37.500 0.00 0.00 33.84 4.35
3503 5788 5.538433 AGCTAACATTCCTAAAAACAAGGCA 59.462 36.000 0.00 0.00 33.84 4.75
3504 5789 5.633601 GCTAACATTCCTAAAAACAAGGCAC 59.366 40.000 0.00 0.00 33.84 5.01
3505 5790 4.237349 ACATTCCTAAAAACAAGGCACG 57.763 40.909 0.00 0.00 33.84 5.34
3506 5791 2.785713 TTCCTAAAAACAAGGCACGC 57.214 45.000 0.00 0.00 33.84 5.34
3507 5792 1.681538 TCCTAAAAACAAGGCACGCA 58.318 45.000 0.00 0.00 33.84 5.24
3508 5793 1.606668 TCCTAAAAACAAGGCACGCAG 59.393 47.619 0.00 0.00 33.84 5.18
3509 5794 1.335872 CCTAAAAACAAGGCACGCAGG 60.336 52.381 0.00 0.00 0.00 4.85
3510 5795 0.031449 TAAAAACAAGGCACGCAGGC 59.969 50.000 0.00 0.00 44.61 4.85
3521 5806 2.511373 CGCAGGCCATGAGCGTTA 60.511 61.111 19.41 0.00 45.82 3.18
3522 5807 2.528743 CGCAGGCCATGAGCGTTAG 61.529 63.158 19.41 0.00 45.82 2.34
3523 5808 1.450312 GCAGGCCATGAGCGTTAGT 60.450 57.895 5.01 0.00 45.17 2.24
3524 5809 1.709147 GCAGGCCATGAGCGTTAGTG 61.709 60.000 5.01 0.00 45.17 2.74
3525 5810 1.091771 CAGGCCATGAGCGTTAGTGG 61.092 60.000 5.01 0.00 45.17 4.00
3526 5811 1.220749 GGCCATGAGCGTTAGTGGA 59.779 57.895 0.00 0.00 45.17 4.02
3527 5812 0.179045 GGCCATGAGCGTTAGTGGAT 60.179 55.000 0.00 0.00 45.17 3.41
3528 5813 1.221414 GCCATGAGCGTTAGTGGATC 58.779 55.000 6.59 0.00 33.53 3.36
3529 5814 1.871080 CCATGAGCGTTAGTGGATCC 58.129 55.000 4.20 4.20 33.53 3.36
3530 5815 1.414181 CCATGAGCGTTAGTGGATCCT 59.586 52.381 14.23 0.00 33.53 3.24
3531 5816 2.628178 CCATGAGCGTTAGTGGATCCTA 59.372 50.000 14.23 0.00 33.53 2.94
3532 5817 3.553096 CCATGAGCGTTAGTGGATCCTAC 60.553 52.174 14.23 9.61 33.53 3.18
3533 5818 2.730382 TGAGCGTTAGTGGATCCTACA 58.270 47.619 14.23 0.00 0.00 2.74
3534 5819 3.093814 TGAGCGTTAGTGGATCCTACAA 58.906 45.455 14.23 0.75 0.00 2.41
3535 5820 3.704566 TGAGCGTTAGTGGATCCTACAAT 59.295 43.478 14.23 0.00 0.00 2.71
3536 5821 4.202121 TGAGCGTTAGTGGATCCTACAATC 60.202 45.833 14.23 7.18 0.00 2.67
3537 5822 3.961408 AGCGTTAGTGGATCCTACAATCT 59.039 43.478 14.23 4.64 0.00 2.40
3538 5823 5.138276 AGCGTTAGTGGATCCTACAATCTA 58.862 41.667 14.23 3.74 0.00 1.98
3539 5824 5.241949 AGCGTTAGTGGATCCTACAATCTAG 59.758 44.000 14.23 0.00 0.00 2.43
3540 5825 5.565045 GCGTTAGTGGATCCTACAATCTAGG 60.565 48.000 14.23 4.25 36.06 3.02
3541 5826 5.768662 CGTTAGTGGATCCTACAATCTAGGA 59.231 44.000 14.23 0.00 46.65 2.94
3542 5827 6.294065 CGTTAGTGGATCCTACAATCTAGGAC 60.294 46.154 14.23 0.00 45.56 3.85
3543 5828 5.411103 AGTGGATCCTACAATCTAGGACT 57.589 43.478 14.23 0.00 45.56 3.85
3544 5829 6.532119 AGTGGATCCTACAATCTAGGACTA 57.468 41.667 14.23 0.00 45.56 2.59
3545 5830 6.548321 AGTGGATCCTACAATCTAGGACTAG 58.452 44.000 14.23 0.00 45.56 2.57
3546 5831 6.333168 AGTGGATCCTACAATCTAGGACTAGA 59.667 42.308 14.23 11.16 45.56 2.43
3547 5832 6.431852 GTGGATCCTACAATCTAGGACTAGAC 59.568 46.154 14.23 0.00 45.56 2.59
3548 5833 6.333168 TGGATCCTACAATCTAGGACTAGACT 59.667 42.308 14.23 0.00 45.56 3.24
3549 5834 7.147105 TGGATCCTACAATCTAGGACTAGACTT 60.147 40.741 14.23 5.11 45.56 3.01
3550 5835 8.384718 GGATCCTACAATCTAGGACTAGACTTA 58.615 40.741 11.00 3.14 45.56 2.24
3551 5836 9.444600 GATCCTACAATCTAGGACTAGACTTAG 57.555 40.741 11.00 10.85 45.56 2.18
3552 5837 8.334522 TCCTACAATCTAGGACTAGACTTAGT 57.665 38.462 11.00 9.60 44.11 2.24
3553 5838 8.780003 TCCTACAATCTAGGACTAGACTTAGTT 58.220 37.037 11.00 0.00 44.11 2.24
3557 5842 9.924010 ACAATCTAGGACTAGACTTAGTTACAT 57.076 33.333 11.00 0.00 44.11 2.29
3560 5845 9.787435 ATCTAGGACTAGACTTAGTTACATCAG 57.213 37.037 11.00 0.00 44.11 2.90
3561 5846 8.990203 TCTAGGACTAGACTTAGTTACATCAGA 58.010 37.037 10.28 0.00 40.21 3.27
3562 5847 7.868906 AGGACTAGACTTAGTTACATCAGAC 57.131 40.000 0.00 0.00 40.21 3.51
3563 5848 7.635648 AGGACTAGACTTAGTTACATCAGACT 58.364 38.462 0.00 0.00 40.21 3.24
3564 5849 7.554835 AGGACTAGACTTAGTTACATCAGACTG 59.445 40.741 0.00 0.00 40.21 3.51
3565 5850 7.337436 GGACTAGACTTAGTTACATCAGACTGT 59.663 40.741 1.59 0.00 40.21 3.55
3566 5851 8.638629 ACTAGACTTAGTTACATCAGACTGTT 57.361 34.615 1.59 0.00 36.75 3.16
3567 5852 9.736414 ACTAGACTTAGTTACATCAGACTGTTA 57.264 33.333 1.59 0.00 36.75 2.41
3568 5853 9.991388 CTAGACTTAGTTACATCAGACTGTTAC 57.009 37.037 1.59 0.00 0.00 2.50
3569 5854 8.405418 AGACTTAGTTACATCAGACTGTTACA 57.595 34.615 1.59 0.00 32.52 2.41
3570 5855 8.298140 AGACTTAGTTACATCAGACTGTTACAC 58.702 37.037 1.59 0.00 32.52 2.90
3571 5856 7.948357 ACTTAGTTACATCAGACTGTTACACA 58.052 34.615 1.59 0.00 32.52 3.72
3572 5857 8.418662 ACTTAGTTACATCAGACTGTTACACAA 58.581 33.333 1.59 0.00 32.52 3.33
3573 5858 9.256477 CTTAGTTACATCAGACTGTTACACAAA 57.744 33.333 1.59 0.00 32.52 2.83
3574 5859 9.772973 TTAGTTACATCAGACTGTTACACAAAT 57.227 29.630 1.59 0.00 32.52 2.32
3575 5860 8.087982 AGTTACATCAGACTGTTACACAAATG 57.912 34.615 1.59 0.00 32.52 2.32
3576 5861 7.715249 AGTTACATCAGACTGTTACACAAATGT 59.285 33.333 1.59 5.05 43.30 2.71
3586 5871 8.951787 ACTGTTACACAAATGTACACTAGAAA 57.048 30.769 0.00 0.00 41.12 2.52
3592 5877 6.037830 ACACAAATGTACACTAGAAAAACGCT 59.962 34.615 0.00 0.00 37.26 5.07
3594 5879 6.259167 ACAAATGTACACTAGAAAAACGCTCA 59.741 34.615 0.00 0.00 0.00 4.26
3626 5911 3.498334 ACGGGGCCACATTAACTTTAAA 58.502 40.909 5.46 0.00 0.00 1.52
3689 5974 9.631257 TTCTCATACATATCAAATGACATTGGT 57.369 29.630 0.34 0.00 0.00 3.67
3722 6007 2.517959 CATCAAATCCCCACACACACT 58.482 47.619 0.00 0.00 0.00 3.55
3736 6021 1.073444 ACACACTCTCTCTCCGTACCA 59.927 52.381 0.00 0.00 0.00 3.25
3886 6177 8.181573 GGATTATGTGTATTATATTTGCCACCG 58.818 37.037 0.00 0.00 0.00 4.94
3999 7414 8.882557 AATATGCATTATCTCTCTCTCTCTCA 57.117 34.615 3.54 0.00 0.00 3.27
4002 7417 5.299028 TGCATTATCTCTCTCTCTCTCACAC 59.701 44.000 0.00 0.00 0.00 3.82
4097 7528 2.665089 ATCGATGGGCGTTGGGTGA 61.665 57.895 0.00 0.00 41.80 4.02
4229 7660 2.669569 CCACAACACCCGAGCTGG 60.670 66.667 0.00 0.00 37.55 4.85
4335 7766 1.945394 GAGCACATACCTTGATGCAGG 59.055 52.381 0.00 0.00 40.63 4.85
4336 7767 1.561076 AGCACATACCTTGATGCAGGA 59.439 47.619 0.00 0.00 40.63 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.188247 TCAGTACAGTGGATGCACTAAC 57.812 45.455 20.32 19.31 32.90 2.34
50 51 2.880268 TCCTGACAACAATGCACTCAAG 59.120 45.455 0.00 0.00 0.00 3.02
67 71 3.077484 ACATCATCCCAAACTGTCCTG 57.923 47.619 0.00 0.00 0.00 3.86
97 101 8.901793 ACAATCAACAATGGCAACTTTAAATTT 58.098 25.926 0.00 0.00 37.61 1.82
98 102 8.449251 ACAATCAACAATGGCAACTTTAAATT 57.551 26.923 0.00 0.00 37.61 1.82
99 103 9.553064 TTACAATCAACAATGGCAACTTTAAAT 57.447 25.926 0.00 0.00 37.61 1.40
122 126 3.568538 CAATGAGCAGCAGGTGTTTTAC 58.431 45.455 0.66 0.00 0.00 2.01
136 140 2.945447 TGCATAAACCAGCAATGAGC 57.055 45.000 0.00 0.00 46.19 4.26
144 148 6.506500 AGAACTTCTCATTGCATAAACCAG 57.493 37.500 0.00 0.00 0.00 4.00
147 151 5.284660 CGCAAGAACTTCTCATTGCATAAAC 59.715 40.000 12.37 0.00 46.48 2.01
150 154 3.181507 GCGCAAGAACTTCTCATTGCATA 60.182 43.478 0.30 0.00 46.48 3.14
151 155 2.415090 GCGCAAGAACTTCTCATTGCAT 60.415 45.455 0.30 0.00 46.48 3.96
152 156 1.069022 GCGCAAGAACTTCTCATTGCA 60.069 47.619 0.30 0.00 46.48 4.08
153 157 1.198637 AGCGCAAGAACTTCTCATTGC 59.801 47.619 11.47 4.46 43.52 3.56
154 158 3.549299 AAGCGCAAGAACTTCTCATTG 57.451 42.857 11.47 0.00 43.02 2.82
156 160 4.515191 TGTTTAAGCGCAAGAACTTCTCAT 59.485 37.500 11.47 0.00 43.02 2.90
157 161 3.874543 TGTTTAAGCGCAAGAACTTCTCA 59.125 39.130 11.47 0.00 43.02 3.27
158 162 4.468095 TGTTTAAGCGCAAGAACTTCTC 57.532 40.909 11.47 0.00 43.02 2.87
207 211 3.823304 GCCAAACCTGTTTCAGAGAGATT 59.177 43.478 0.00 0.00 32.44 2.40
305 310 6.996879 AGATGAATGAATCCATGGTTCTAGTG 59.003 38.462 12.58 0.00 32.36 2.74
341 346 2.514592 ATCTGCATCGCCAACGGG 60.515 61.111 0.00 0.00 40.63 5.28
405 410 0.247655 CGACGCCATGGATTTCGTTG 60.248 55.000 18.40 15.25 35.12 4.10
458 464 2.354539 CAACCAAAAGGCCACGCG 60.355 61.111 5.01 3.53 0.00 6.01
585 595 4.155826 GGTTTTCAAGCAGCCAAACTTTTT 59.844 37.500 0.00 0.00 31.12 1.94
586 596 3.689161 GGTTTTCAAGCAGCCAAACTTTT 59.311 39.130 0.00 0.00 31.12 2.27
622 632 2.364647 CCATAGAACGTCCCCCTAAGTC 59.635 54.545 0.00 0.00 0.00 3.01
671 691 2.366590 TCATAGCGTCAAGGATGCATCT 59.633 45.455 25.28 9.51 45.92 2.90
726 746 4.378046 CGACTCCAAATAAGTTTCCAACGG 60.378 45.833 0.00 0.00 36.23 4.44
759 2972 2.279784 CGGGAAGCGATCTGAGCC 60.280 66.667 0.00 0.00 34.64 4.70
769 2982 2.125633 GGAAGTCGGACGGGAAGC 60.126 66.667 1.89 0.00 0.00 3.86
775 2988 1.202313 GGAATCTGAGGAAGTCGGACG 60.202 57.143 1.89 0.00 43.74 4.79
789 3002 2.516227 TCCGACTCAGACTGGAATCT 57.484 50.000 1.81 0.00 0.00 2.40
791 3004 1.678627 CGATCCGACTCAGACTGGAAT 59.321 52.381 1.81 0.00 33.48 3.01
797 3010 2.413765 GCCCGATCCGACTCAGAC 59.586 66.667 0.00 0.00 0.00 3.51
812 3026 2.893398 CAGTACGTGGAGAGGGCC 59.107 66.667 0.00 0.00 0.00 5.80
813 3027 1.961180 ATGCAGTACGTGGAGAGGGC 61.961 60.000 0.00 0.00 0.00 5.19
814 3028 0.103208 GATGCAGTACGTGGAGAGGG 59.897 60.000 0.00 0.00 0.00 4.30
815 3029 0.817654 TGATGCAGTACGTGGAGAGG 59.182 55.000 0.00 0.00 0.00 3.69
816 3030 1.800655 GCTGATGCAGTACGTGGAGAG 60.801 57.143 0.00 0.00 39.41 3.20
817 3031 0.173481 GCTGATGCAGTACGTGGAGA 59.827 55.000 0.00 0.00 39.41 3.71
818 3032 0.174389 AGCTGATGCAGTACGTGGAG 59.826 55.000 0.00 0.00 42.74 3.86
819 3033 0.108662 CAGCTGATGCAGTACGTGGA 60.109 55.000 8.42 0.00 42.74 4.02
830 3044 9.242477 GTAGTACATATATGTATGCAGCTGATG 57.758 37.037 24.67 11.16 44.25 3.07
831 3045 8.971073 TGTAGTACATATATGTATGCAGCTGAT 58.029 33.333 24.67 10.74 44.25 2.90
833 3047 7.218963 CGTGTAGTACATATATGTATGCAGCTG 59.781 40.741 24.67 10.11 44.25 4.24
834 3048 7.251281 CGTGTAGTACATATATGTATGCAGCT 58.749 38.462 24.67 18.80 44.25 4.24
835 3049 6.020599 GCGTGTAGTACATATATGTATGCAGC 60.021 42.308 24.67 20.14 44.25 5.25
836 3050 7.027161 TGCGTGTAGTACATATATGTATGCAG 58.973 38.462 24.67 15.93 44.25 4.41
837 3051 6.915349 TGCGTGTAGTACATATATGTATGCA 58.085 36.000 24.67 22.54 44.25 3.96
838 3052 7.987268 ATGCGTGTAGTACATATATGTATGC 57.013 36.000 24.67 20.64 44.25 3.14
839 3053 9.997482 TGTATGCGTGTAGTACATATATGTATG 57.003 33.333 24.67 12.96 44.25 2.39
840 3054 9.999009 GTGTATGCGTGTAGTACATATATGTAT 57.001 33.333 24.67 16.71 44.25 2.29
841 3055 9.001542 TGTGTATGCGTGTAGTACATATATGTA 57.998 33.333 19.51 19.51 41.97 2.29
842 3056 7.878036 TGTGTATGCGTGTAGTACATATATGT 58.122 34.615 21.57 21.57 44.48 2.29
843 3057 7.484959 CCTGTGTATGCGTGTAGTACATATATG 59.515 40.741 11.29 11.29 31.71 1.78
844 3058 7.176165 ACCTGTGTATGCGTGTAGTACATATAT 59.824 37.037 6.21 4.16 31.71 0.86
845 3059 6.487668 ACCTGTGTATGCGTGTAGTACATATA 59.512 38.462 6.21 3.92 31.71 0.86
846 3060 5.301045 ACCTGTGTATGCGTGTAGTACATAT 59.699 40.000 6.21 4.83 31.71 1.78
847 3061 4.641541 ACCTGTGTATGCGTGTAGTACATA 59.358 41.667 6.21 0.00 31.71 2.29
848 3062 3.446161 ACCTGTGTATGCGTGTAGTACAT 59.554 43.478 6.21 0.00 31.71 2.29
849 3063 2.821378 ACCTGTGTATGCGTGTAGTACA 59.179 45.455 0.00 0.00 0.00 2.90
850 3064 3.128242 AGACCTGTGTATGCGTGTAGTAC 59.872 47.826 0.00 0.00 0.00 2.73
851 3065 3.349927 AGACCTGTGTATGCGTGTAGTA 58.650 45.455 0.00 0.00 0.00 1.82
852 3066 2.168496 AGACCTGTGTATGCGTGTAGT 58.832 47.619 0.00 0.00 0.00 2.73
853 3067 2.923655 CAAGACCTGTGTATGCGTGTAG 59.076 50.000 0.00 0.00 0.00 2.74
854 3068 2.353307 CCAAGACCTGTGTATGCGTGTA 60.353 50.000 0.00 0.00 0.00 2.90
855 3069 1.608025 CCAAGACCTGTGTATGCGTGT 60.608 52.381 0.00 0.00 0.00 4.49
856 3070 1.078709 CCAAGACCTGTGTATGCGTG 58.921 55.000 0.00 0.00 0.00 5.34
857 3071 0.673644 GCCAAGACCTGTGTATGCGT 60.674 55.000 0.00 0.00 0.00 5.24
858 3072 1.695893 CGCCAAGACCTGTGTATGCG 61.696 60.000 0.00 0.00 0.00 4.73
859 3073 1.982073 GCGCCAAGACCTGTGTATGC 61.982 60.000 0.00 0.00 0.00 3.14
883 3097 2.032634 TGCGCAACGATGAACCTCC 61.033 57.895 8.16 0.00 0.00 4.30
916 3130 2.930950 TGGTTGAGAAACACTTGGAGG 58.069 47.619 0.00 0.00 0.00 4.30
934 3150 1.154205 GCCTGATGGATCGTCGTTGG 61.154 60.000 0.00 0.00 34.57 3.77
954 3170 4.204891 CGAACGATGAACGCCGCC 62.205 66.667 0.00 0.00 46.94 6.13
1055 3271 3.048602 CGAAGTCCGTCCACCTGT 58.951 61.111 0.00 0.00 0.00 4.00
1150 3366 0.534412 AAGAGGTCTGGCATCTCGTG 59.466 55.000 0.00 0.00 37.23 4.35
1161 3377 0.039035 AGAGGCAGTCGAAGAGGTCT 59.961 55.000 0.00 0.00 36.95 3.85
1323 3545 2.829384 GGACCCCCAGTTGCTCACA 61.829 63.158 0.00 0.00 0.00 3.58
1370 3592 2.387445 TACGTGTGCATGAAGGCGC 61.387 57.895 0.00 0.00 44.35 6.53
1403 3625 0.389948 GAACCGAGCTTGGTCATCGT 60.390 55.000 26.35 10.21 42.89 3.73
1407 3629 0.606604 GGTAGAACCGAGCTTGGTCA 59.393 55.000 26.35 11.66 42.89 4.02
1577 3799 0.037046 GGGGTGCTTTGCTTTGATGG 60.037 55.000 0.00 0.00 0.00 3.51
1661 3883 4.003788 CCAAGGTGGCGAGGACGT 62.004 66.667 0.00 0.00 41.98 4.34
1762 3984 1.407656 AAGGTGAGTTGCAGACGGGA 61.408 55.000 0.00 0.00 0.00 5.14
1765 3987 0.861837 GTGAAGGTGAGTTGCAGACG 59.138 55.000 0.00 0.00 0.00 4.18
2038 4260 2.408022 GAGCGCCTCGACGTACAT 59.592 61.111 2.29 0.00 34.88 2.29
2086 4308 3.214250 CTAGGATGCCGCGGAGGAC 62.214 68.421 33.48 16.01 45.00 3.85
2098 4320 3.537874 GTGCCCGGCGACTAGGAT 61.538 66.667 9.30 0.00 0.00 3.24
2138 4360 2.031420 GCATGGATGATGATGTTGGACG 60.031 50.000 0.00 0.00 33.31 4.79
2289 4513 1.675801 CTGGTGCTCTGAGAAGCCA 59.324 57.895 12.15 12.30 41.77 4.75
2347 4571 2.892425 CGCCCTCCGAAGCATGTC 60.892 66.667 0.00 0.00 40.02 3.06
2415 4639 4.316823 TGCTCTCCGAGGGGGTGT 62.317 66.667 0.00 0.00 37.00 4.16
2589 4820 2.286121 GGGAGTGGGGTGATGGGA 60.286 66.667 0.00 0.00 0.00 4.37
2650 4884 1.734655 AACCTCTGCCTCTTCTCCAA 58.265 50.000 0.00 0.00 0.00 3.53
2835 5069 1.277557 ACCTGAGCGAAGAAGAGCATT 59.722 47.619 0.00 0.00 35.48 3.56
2875 5116 0.748005 AAGCACTGCTCGGTGTTGTT 60.748 50.000 3.40 0.47 38.25 2.83
2888 5134 1.346068 GAACCCAGAGACTGAAGCACT 59.654 52.381 0.00 0.00 32.44 4.40
2894 5140 1.891150 GGTAACGAACCCAGAGACTGA 59.109 52.381 0.00 0.00 43.16 3.41
2914 5160 0.811915 ACCTCCGATTCTCTGTCGTG 59.188 55.000 0.00 0.00 37.39 4.35
2915 5161 1.096416 GACCTCCGATTCTCTGTCGT 58.904 55.000 0.00 0.00 37.39 4.34
2937 5183 2.045536 GGCAGGGGACAGCAGAAG 60.046 66.667 0.00 0.00 46.07 2.85
2955 5201 3.961849 TGCATCATTTGGGCTGTAGTAA 58.038 40.909 0.00 0.00 0.00 2.24
3001 5247 6.512342 AGAGCGATGTGTTAAAGTAGTAGT 57.488 37.500 0.00 0.00 0.00 2.73
3002 5248 6.253727 CCAAGAGCGATGTGTTAAAGTAGTAG 59.746 42.308 0.00 0.00 0.00 2.57
3003 5249 6.097356 CCAAGAGCGATGTGTTAAAGTAGTA 58.903 40.000 0.00 0.00 0.00 1.82
3004 5250 4.929808 CCAAGAGCGATGTGTTAAAGTAGT 59.070 41.667 0.00 0.00 0.00 2.73
3005 5251 4.929808 ACCAAGAGCGATGTGTTAAAGTAG 59.070 41.667 0.00 0.00 0.00 2.57
3006 5252 4.890088 ACCAAGAGCGATGTGTTAAAGTA 58.110 39.130 0.00 0.00 0.00 2.24
3010 5256 6.811253 AAAATACCAAGAGCGATGTGTTAA 57.189 33.333 0.00 0.00 0.00 2.01
3011 5257 6.348950 CCAAAAATACCAAGAGCGATGTGTTA 60.349 38.462 0.00 0.00 0.00 2.41
3012 5258 5.460646 CAAAAATACCAAGAGCGATGTGTT 58.539 37.500 0.00 0.00 0.00 3.32
3013 5259 4.082787 CCAAAAATACCAAGAGCGATGTGT 60.083 41.667 0.00 0.00 0.00 3.72
3014 5260 4.414852 CCAAAAATACCAAGAGCGATGTG 58.585 43.478 0.00 0.00 0.00 3.21
3074 5320 5.545723 TGAAATTTCAAAGCCCCTTAATCCA 59.454 36.000 18.45 0.00 33.55 3.41
3079 5325 5.125417 CGATCTGAAATTTCAAAGCCCCTTA 59.875 40.000 20.82 0.00 36.64 2.69
3089 5335 9.087424 CACTATAGTGTTCGATCTGAAATTTCA 57.913 33.333 22.48 19.45 40.96 2.69
3135 5381 3.466836 TGCACGTGAAGAAAGAGATTGT 58.533 40.909 22.23 0.00 0.00 2.71
3146 5392 4.988598 ACCGCCCTGCACGTGAAG 62.989 66.667 22.23 19.64 0.00 3.02
3184 5430 5.018809 AGGTGGATGCACAATTTTACTCAT 58.981 37.500 19.67 0.00 0.00 2.90
3186 5432 4.218417 ACAGGTGGATGCACAATTTTACTC 59.782 41.667 19.67 0.00 0.00 2.59
3213 5467 1.730902 CGTCGCTCCGATATGCAGG 60.731 63.158 0.00 0.00 38.42 4.85
3228 5482 3.003275 TCTTTCCAAAATCAGTGTGCGTC 59.997 43.478 0.00 0.00 0.00 5.19
3229 5483 2.948979 TCTTTCCAAAATCAGTGTGCGT 59.051 40.909 0.00 0.00 0.00 5.24
3263 5519 3.823304 AGAGGACACCTTCAAATTTGAGC 59.177 43.478 19.64 7.56 38.61 4.26
3321 5593 3.408150 CTCTCGTTAAGCGCATTTGTTC 58.592 45.455 11.47 0.00 41.07 3.18
3322 5594 2.412847 GCTCTCGTTAAGCGCATTTGTT 60.413 45.455 11.47 0.00 41.07 2.83
3346 5631 0.843309 TGTCCAGGTTTGCTGAAGGA 59.157 50.000 0.00 0.00 0.00 3.36
3379 5664 4.163649 TCTTGATCTCATGACAGGCTCATT 59.836 41.667 0.00 0.00 37.53 2.57
3388 5673 5.273674 TGAGGACATCTTGATCTCATGAC 57.726 43.478 0.00 0.00 33.67 3.06
3415 5700 2.172483 TTGAGCTCTCCAACTCCCGC 62.172 60.000 16.19 0.00 31.65 6.13
3416 5701 0.539051 ATTGAGCTCTCCAACTCCCG 59.461 55.000 16.19 0.00 31.65 5.14
3417 5702 2.290577 ACAATTGAGCTCTCCAACTCCC 60.291 50.000 16.19 0.00 31.65 4.30
3418 5703 3.064900 ACAATTGAGCTCTCCAACTCC 57.935 47.619 16.19 0.00 31.65 3.85
3419 5704 5.877012 TGAATACAATTGAGCTCTCCAACTC 59.123 40.000 16.19 3.18 0.00 3.01
3420 5705 5.645497 GTGAATACAATTGAGCTCTCCAACT 59.355 40.000 16.19 0.00 0.00 3.16
3421 5706 5.645497 AGTGAATACAATTGAGCTCTCCAAC 59.355 40.000 16.19 0.00 0.00 3.77
3422 5707 5.645067 CAGTGAATACAATTGAGCTCTCCAA 59.355 40.000 16.19 1.53 0.00 3.53
3423 5708 5.181009 CAGTGAATACAATTGAGCTCTCCA 58.819 41.667 16.19 0.00 0.00 3.86
3424 5709 4.034975 GCAGTGAATACAATTGAGCTCTCC 59.965 45.833 16.19 0.00 0.00 3.71
3425 5710 4.874966 AGCAGTGAATACAATTGAGCTCTC 59.125 41.667 16.19 1.66 0.00 3.20
3426 5711 4.841422 AGCAGTGAATACAATTGAGCTCT 58.159 39.130 16.19 0.00 0.00 4.09
3427 5712 4.633126 TGAGCAGTGAATACAATTGAGCTC 59.367 41.667 13.59 6.82 44.45 4.09
3428 5713 4.582869 TGAGCAGTGAATACAATTGAGCT 58.417 39.130 13.59 7.62 0.00 4.09
3429 5714 4.952262 TGAGCAGTGAATACAATTGAGC 57.048 40.909 13.59 3.09 0.00 4.26
3430 5715 6.245115 TGTTGAGCAGTGAATACAATTGAG 57.755 37.500 13.59 0.00 0.00 3.02
3431 5716 6.631971 TTGTTGAGCAGTGAATACAATTGA 57.368 33.333 13.59 0.00 0.00 2.57
3432 5717 6.864685 ACATTGTTGAGCAGTGAATACAATTG 59.135 34.615 3.24 3.24 38.09 2.32
3433 5718 6.985117 ACATTGTTGAGCAGTGAATACAATT 58.015 32.000 0.00 0.00 38.09 2.32
3434 5719 6.579666 ACATTGTTGAGCAGTGAATACAAT 57.420 33.333 0.00 1.15 38.09 2.71
3435 5720 6.389830 AACATTGTTGAGCAGTGAATACAA 57.610 33.333 0.15 0.00 38.09 2.41
3436 5721 6.484977 TGTAACATTGTTGAGCAGTGAATACA 59.515 34.615 12.30 5.28 37.77 2.29
3437 5722 6.898041 TGTAACATTGTTGAGCAGTGAATAC 58.102 36.000 12.30 3.02 38.09 1.89
3438 5723 7.503521 TTGTAACATTGTTGAGCAGTGAATA 57.496 32.000 12.30 0.00 38.09 1.75
3439 5724 6.389830 TTGTAACATTGTTGAGCAGTGAAT 57.610 33.333 12.30 0.00 38.09 2.57
3440 5725 5.826601 TTGTAACATTGTTGAGCAGTGAA 57.173 34.783 12.30 0.00 38.09 3.18
3441 5726 5.356751 ACTTTGTAACATTGTTGAGCAGTGA 59.643 36.000 12.30 0.00 38.09 3.41
3442 5727 5.581605 ACTTTGTAACATTGTTGAGCAGTG 58.418 37.500 12.30 7.46 40.21 3.66
3443 5728 5.835113 ACTTTGTAACATTGTTGAGCAGT 57.165 34.783 12.30 6.41 0.00 4.40
3444 5729 6.724263 TGTACTTTGTAACATTGTTGAGCAG 58.276 36.000 12.30 5.85 0.00 4.24
3445 5730 6.685527 TGTACTTTGTAACATTGTTGAGCA 57.314 33.333 12.30 5.87 0.00 4.26
3446 5731 6.970043 TGTTGTACTTTGTAACATTGTTGAGC 59.030 34.615 12.30 3.47 30.06 4.26
3451 5736 9.555727 ACTCTATGTTGTACTTTGTAACATTGT 57.444 29.630 12.19 7.85 40.93 2.71
3452 5737 9.811655 CACTCTATGTTGTACTTTGTAACATTG 57.188 33.333 12.19 10.79 40.93 2.82
3453 5738 9.772973 TCACTCTATGTTGTACTTTGTAACATT 57.227 29.630 12.19 0.78 40.93 2.71
3454 5739 9.424319 CTCACTCTATGTTGTACTTTGTAACAT 57.576 33.333 11.78 11.78 44.54 2.71
3455 5740 7.384115 GCTCACTCTATGTTGTACTTTGTAACA 59.616 37.037 0.00 0.00 38.52 2.41
3456 5741 7.599245 AGCTCACTCTATGTTGTACTTTGTAAC 59.401 37.037 0.00 0.00 0.00 2.50
3457 5742 7.667557 AGCTCACTCTATGTTGTACTTTGTAA 58.332 34.615 0.00 0.00 0.00 2.41
3458 5743 7.228314 AGCTCACTCTATGTTGTACTTTGTA 57.772 36.000 0.00 0.00 0.00 2.41
3459 5744 6.102897 AGCTCACTCTATGTTGTACTTTGT 57.897 37.500 0.00 0.00 0.00 2.83
3460 5745 7.598869 TGTTAGCTCACTCTATGTTGTACTTTG 59.401 37.037 0.00 0.00 0.00 2.77
3461 5746 7.667557 TGTTAGCTCACTCTATGTTGTACTTT 58.332 34.615 0.00 0.00 0.00 2.66
3462 5747 7.228314 TGTTAGCTCACTCTATGTTGTACTT 57.772 36.000 0.00 0.00 0.00 2.24
3463 5748 6.835819 TGTTAGCTCACTCTATGTTGTACT 57.164 37.500 0.00 0.00 0.00 2.73
3464 5749 7.222999 GGAATGTTAGCTCACTCTATGTTGTAC 59.777 40.741 0.00 0.00 0.00 2.90
3465 5750 7.124298 AGGAATGTTAGCTCACTCTATGTTGTA 59.876 37.037 0.00 0.00 0.00 2.41
3466 5751 6.070538 AGGAATGTTAGCTCACTCTATGTTGT 60.071 38.462 0.00 0.00 0.00 3.32
3467 5752 6.344500 AGGAATGTTAGCTCACTCTATGTTG 58.656 40.000 0.00 0.00 0.00 3.33
3468 5753 6.552445 AGGAATGTTAGCTCACTCTATGTT 57.448 37.500 0.00 0.00 0.00 2.71
3469 5754 7.661536 TTAGGAATGTTAGCTCACTCTATGT 57.338 36.000 0.00 0.00 0.00 2.29
3470 5755 8.948631 TTTTAGGAATGTTAGCTCACTCTATG 57.051 34.615 0.00 0.00 0.00 2.23
3471 5756 9.384764 GTTTTTAGGAATGTTAGCTCACTCTAT 57.615 33.333 0.00 0.00 0.00 1.98
3472 5757 8.372459 TGTTTTTAGGAATGTTAGCTCACTCTA 58.628 33.333 0.00 0.00 0.00 2.43
3473 5758 7.224297 TGTTTTTAGGAATGTTAGCTCACTCT 58.776 34.615 0.00 0.00 0.00 3.24
3474 5759 7.435068 TGTTTTTAGGAATGTTAGCTCACTC 57.565 36.000 0.00 0.00 0.00 3.51
3475 5760 7.040409 CCTTGTTTTTAGGAATGTTAGCTCACT 60.040 37.037 0.00 0.00 34.56 3.41
3476 5761 7.084486 CCTTGTTTTTAGGAATGTTAGCTCAC 58.916 38.462 0.00 0.00 34.56 3.51
3477 5762 6.294508 GCCTTGTTTTTAGGAATGTTAGCTCA 60.295 38.462 0.00 0.00 34.56 4.26
3478 5763 6.093404 GCCTTGTTTTTAGGAATGTTAGCTC 58.907 40.000 0.00 0.00 34.56 4.09
3479 5764 5.538433 TGCCTTGTTTTTAGGAATGTTAGCT 59.462 36.000 0.00 0.00 34.56 3.32
3480 5765 5.633601 GTGCCTTGTTTTTAGGAATGTTAGC 59.366 40.000 0.00 0.00 34.56 3.09
3481 5766 5.856455 CGTGCCTTGTTTTTAGGAATGTTAG 59.144 40.000 0.00 0.00 34.56 2.34
3482 5767 5.764131 CGTGCCTTGTTTTTAGGAATGTTA 58.236 37.500 0.00 0.00 34.56 2.41
3483 5768 4.616953 CGTGCCTTGTTTTTAGGAATGTT 58.383 39.130 0.00 0.00 34.56 2.71
3484 5769 3.552068 GCGTGCCTTGTTTTTAGGAATGT 60.552 43.478 0.00 0.00 34.56 2.71
3485 5770 2.986479 GCGTGCCTTGTTTTTAGGAATG 59.014 45.455 0.00 0.00 34.56 2.67
3486 5771 2.625790 TGCGTGCCTTGTTTTTAGGAAT 59.374 40.909 0.00 0.00 34.56 3.01
3487 5772 2.025155 TGCGTGCCTTGTTTTTAGGAA 58.975 42.857 0.00 0.00 34.56 3.36
3488 5773 1.606668 CTGCGTGCCTTGTTTTTAGGA 59.393 47.619 0.00 0.00 34.56 2.94
3489 5774 1.335872 CCTGCGTGCCTTGTTTTTAGG 60.336 52.381 0.00 0.00 35.80 2.69
3490 5775 1.930371 GCCTGCGTGCCTTGTTTTTAG 60.930 52.381 0.00 0.00 0.00 1.85
3491 5776 0.031449 GCCTGCGTGCCTTGTTTTTA 59.969 50.000 0.00 0.00 0.00 1.52
3492 5777 1.227234 GCCTGCGTGCCTTGTTTTT 60.227 52.632 0.00 0.00 0.00 1.94
3493 5778 2.417097 GCCTGCGTGCCTTGTTTT 59.583 55.556 0.00 0.00 0.00 2.43
3505 5790 1.450312 ACTAACGCTCATGGCCTGC 60.450 57.895 3.32 2.20 37.74 4.85
3506 5791 1.091771 CCACTAACGCTCATGGCCTG 61.092 60.000 3.32 0.00 37.74 4.85
3507 5792 1.221840 CCACTAACGCTCATGGCCT 59.778 57.895 3.32 0.00 37.74 5.19
3508 5793 0.179045 ATCCACTAACGCTCATGGCC 60.179 55.000 0.00 0.00 37.74 5.36
3509 5794 1.221414 GATCCACTAACGCTCATGGC 58.779 55.000 0.00 0.00 37.64 4.40
3510 5795 1.414181 AGGATCCACTAACGCTCATGG 59.586 52.381 15.82 0.00 0.00 3.66
3511 5796 2.898729 AGGATCCACTAACGCTCATG 57.101 50.000 15.82 0.00 0.00 3.07
3512 5797 3.296854 TGTAGGATCCACTAACGCTCAT 58.703 45.455 15.82 0.00 0.00 2.90
3513 5798 2.730382 TGTAGGATCCACTAACGCTCA 58.270 47.619 15.82 0.00 0.00 4.26
3514 5799 3.795623 TTGTAGGATCCACTAACGCTC 57.204 47.619 15.82 0.00 0.00 5.03
3515 5800 3.961408 AGATTGTAGGATCCACTAACGCT 59.039 43.478 15.82 4.30 0.00 5.07
3516 5801 4.323553 AGATTGTAGGATCCACTAACGC 57.676 45.455 15.82 2.17 0.00 4.84
3517 5802 5.768662 TCCTAGATTGTAGGATCCACTAACG 59.231 44.000 15.82 1.90 38.71 3.18
3518 5803 6.778559 AGTCCTAGATTGTAGGATCCACTAAC 59.221 42.308 15.82 7.05 44.67 2.34
3519 5804 6.923670 AGTCCTAGATTGTAGGATCCACTAA 58.076 40.000 15.82 5.78 44.67 2.24
3520 5805 6.532119 AGTCCTAGATTGTAGGATCCACTA 57.468 41.667 15.82 7.65 44.67 2.74
3521 5806 5.411103 AGTCCTAGATTGTAGGATCCACT 57.589 43.478 15.82 3.48 44.67 4.00
3522 5807 6.431852 GTCTAGTCCTAGATTGTAGGATCCAC 59.568 46.154 15.82 10.72 44.67 4.02
3523 5808 6.333168 AGTCTAGTCCTAGATTGTAGGATCCA 59.667 42.308 15.82 0.00 44.67 3.41
3524 5809 6.786122 AGTCTAGTCCTAGATTGTAGGATCC 58.214 44.000 12.36 2.48 44.67 3.36
3525 5810 9.444600 CTAAGTCTAGTCCTAGATTGTAGGATC 57.555 40.741 12.36 7.00 44.67 3.36
3526 5811 8.951541 ACTAAGTCTAGTCCTAGATTGTAGGAT 58.048 37.037 12.36 5.31 44.67 3.24
3527 5812 8.334522 ACTAAGTCTAGTCCTAGATTGTAGGA 57.665 38.462 5.49 5.49 43.32 2.94
3528 5813 8.983702 AACTAAGTCTAGTCCTAGATTGTAGG 57.016 38.462 7.27 0.31 43.32 3.18
3531 5816 9.924010 ATGTAACTAAGTCTAGTCCTAGATTGT 57.076 33.333 7.27 2.68 43.32 2.71
3534 5819 9.787435 CTGATGTAACTAAGTCTAGTCCTAGAT 57.213 37.037 7.27 0.00 43.32 1.98
3535 5820 8.990203 TCTGATGTAACTAAGTCTAGTCCTAGA 58.010 37.037 0.00 0.00 37.39 2.43
3536 5821 9.048446 GTCTGATGTAACTAAGTCTAGTCCTAG 57.952 40.741 0.00 0.00 37.39 3.02
3537 5822 8.770322 AGTCTGATGTAACTAAGTCTAGTCCTA 58.230 37.037 0.00 0.00 37.39 2.94
3538 5823 7.554835 CAGTCTGATGTAACTAAGTCTAGTCCT 59.445 40.741 0.00 0.00 37.39 3.85
3539 5824 7.337436 ACAGTCTGATGTAACTAAGTCTAGTCC 59.663 40.741 6.91 0.00 37.39 3.85
3540 5825 8.271312 ACAGTCTGATGTAACTAAGTCTAGTC 57.729 38.462 6.91 0.00 37.39 2.59
3541 5826 8.638629 AACAGTCTGATGTAACTAAGTCTAGT 57.361 34.615 6.91 0.00 34.31 2.57
3542 5827 9.991388 GTAACAGTCTGATGTAACTAAGTCTAG 57.009 37.037 6.91 0.00 31.70 2.43
3543 5828 9.511272 TGTAACAGTCTGATGTAACTAAGTCTA 57.489 33.333 6.91 0.00 31.70 2.59
3544 5829 8.298140 GTGTAACAGTCTGATGTAACTAAGTCT 58.702 37.037 6.91 0.00 36.32 3.24
3545 5830 8.080417 TGTGTAACAGTCTGATGTAACTAAGTC 58.920 37.037 6.91 0.00 45.67 3.01
3546 5831 7.948357 TGTGTAACAGTCTGATGTAACTAAGT 58.052 34.615 6.91 0.00 45.67 2.24
3564 5849 9.150653 CGTTTTTCTAGTGTACATTTGTGTAAC 57.849 33.333 0.00 0.00 37.35 2.50
3565 5850 7.851963 GCGTTTTTCTAGTGTACATTTGTGTAA 59.148 33.333 0.00 0.00 0.00 2.41
3566 5851 7.225145 AGCGTTTTTCTAGTGTACATTTGTGTA 59.775 33.333 0.00 0.00 0.00 2.90
3567 5852 6.037830 AGCGTTTTTCTAGTGTACATTTGTGT 59.962 34.615 0.00 0.00 0.00 3.72
3568 5853 6.427150 AGCGTTTTTCTAGTGTACATTTGTG 58.573 36.000 0.00 0.00 0.00 3.33
3569 5854 6.259167 TGAGCGTTTTTCTAGTGTACATTTGT 59.741 34.615 0.00 0.00 0.00 2.83
3570 5855 6.655062 TGAGCGTTTTTCTAGTGTACATTTG 58.345 36.000 0.00 0.00 0.00 2.32
3571 5856 6.854496 TGAGCGTTTTTCTAGTGTACATTT 57.146 33.333 0.00 0.00 0.00 2.32
3572 5857 6.620733 GCATGAGCGTTTTTCTAGTGTACATT 60.621 38.462 0.00 0.00 0.00 2.71
3573 5858 5.163854 GCATGAGCGTTTTTCTAGTGTACAT 60.164 40.000 0.00 0.00 0.00 2.29
3574 5859 4.151689 GCATGAGCGTTTTTCTAGTGTACA 59.848 41.667 0.00 0.00 0.00 2.90
3575 5860 4.638963 GCATGAGCGTTTTTCTAGTGTAC 58.361 43.478 0.00 0.00 0.00 2.90
3576 5861 4.921470 GCATGAGCGTTTTTCTAGTGTA 57.079 40.909 0.00 0.00 0.00 2.90
3599 5884 1.247419 TAATGTGGCCCCGTTGCAAG 61.247 55.000 0.00 0.00 0.00 4.01
3712 5997 0.242286 CGGAGAGAGAGTGTGTGTGG 59.758 60.000 0.00 0.00 0.00 4.17
3722 6007 1.634459 AGGAAGTGGTACGGAGAGAGA 59.366 52.381 0.00 0.00 0.00 3.10
3736 6021 1.006639 GGGGAGAGAGAGTGAGGAAGT 59.993 57.143 0.00 0.00 0.00 3.01
3892 6183 9.736023 GCCGATTTACATGAAATAAATTCTCTT 57.264 29.630 0.00 0.00 37.90 2.85
3895 6186 8.006298 TGGCCGATTTACATGAAATAAATTCT 57.994 30.769 0.00 0.00 37.90 2.40
3999 7414 2.401583 ATCAGTGTGTGTGTGTGTGT 57.598 45.000 0.00 0.00 0.00 3.72
4002 7417 7.222805 GTCCTATAATATCAGTGTGTGTGTGTG 59.777 40.741 0.00 0.00 0.00 3.82
4097 7528 2.583101 TGACCAGGTAGAGGAGAGACAT 59.417 50.000 0.00 0.00 0.00 3.06
4229 7660 0.028110 GTCCAGATTTGATTCGCGGC 59.972 55.000 6.13 0.00 0.00 6.53


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.