Multiple sequence alignment - TraesCS7B01G309700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G309700 chr7B 100.000 7524 0 0 1 7524 553644828 553637305 0.000000e+00 13895.0
1 TraesCS7B01G309700 chr7B 92.949 156 11 0 1 156 320118747 320118902 2.110000e-55 228.0
2 TraesCS7B01G309700 chr7B 88.235 187 9 4 170 355 320119092 320119266 2.130000e-50 211.0
3 TraesCS7B01G309700 chr7B 85.535 159 15 4 5651 5808 640211120 640211271 7.810000e-35 159.0
4 TraesCS7B01G309700 chr7B 84.277 159 17 4 5651 5808 749028540 749028691 1.690000e-31 148.0
5 TraesCS7B01G309700 chr7B 83.648 159 18 4 5651 5808 748957279 748957430 7.870000e-30 143.0
6 TraesCS7B01G309700 chr7D 93.327 4975 210 45 629 5552 520419626 520414723 0.000000e+00 7236.0
7 TraesCS7B01G309700 chr7D 92.270 1436 52 29 6124 7524 520414437 520413026 0.000000e+00 1982.0
8 TraesCS7B01G309700 chr7D 92.616 474 19 8 6917 7377 638016620 638017090 0.000000e+00 667.0
9 TraesCS7B01G309700 chr7D 95.192 208 5 5 355 560 520420119 520419915 2.620000e-84 324.0
10 TraesCS7B01G309700 chr7D 88.652 141 7 2 5982 6122 520414727 520414596 6.040000e-36 163.0
11 TraesCS7B01G309700 chr7A 95.052 2021 88 10 4107 6122 596733760 596731747 0.000000e+00 3168.0
12 TraesCS7B01G309700 chr7A 90.376 2182 135 28 357 2513 596737857 596735726 0.000000e+00 2796.0
13 TraesCS7B01G309700 chr7A 94.421 1631 53 14 2497 4122 596735542 596733945 0.000000e+00 2473.0
14 TraesCS7B01G309700 chr7A 92.211 1438 64 23 6124 7524 596731591 596730165 0.000000e+00 1991.0
15 TraesCS7B01G309700 chr7A 94.379 427 14 6 7101 7524 517128098 517128517 0.000000e+00 647.0
16 TraesCS7B01G309700 chr6B 93.176 425 24 4 7101 7524 103259395 103259815 2.980000e-173 619.0
17 TraesCS7B01G309700 chr6B 83.019 159 19 5 5651 5808 542382739 542382588 3.660000e-28 137.0
18 TraesCS7B01G309700 chr6B 97.778 45 1 0 311 355 648814140 648814184 2.250000e-10 78.7
19 TraesCS7B01G309700 chr6B 93.617 47 3 0 309 355 124060771 124060725 3.770000e-08 71.3
20 TraesCS7B01G309700 chrUn 92.471 425 26 5 7101 7524 184899845 184900264 3.000000e-168 603.0
21 TraesCS7B01G309700 chrUn 91.813 171 9 4 7355 7524 218749864 218749698 4.540000e-57 233.0
22 TraesCS7B01G309700 chrUn 84.277 159 17 4 5651 5808 216084183 216084032 1.690000e-31 148.0
23 TraesCS7B01G309700 chrUn 84.277 159 17 4 5651 5808 244197916 244198067 1.690000e-31 148.0
24 TraesCS7B01G309700 chr5B 92.000 425 29 4 7101 7524 553580054 553579634 6.500000e-165 592.0
25 TraesCS7B01G309700 chr2A 92.000 425 29 4 7101 7524 82805698 82805278 6.500000e-165 592.0
26 TraesCS7B01G309700 chr2A 93.750 48 3 0 308 355 402640082 402640035 1.050000e-08 73.1
27 TraesCS7B01G309700 chr2A 100.000 29 0 0 645 673 115807670 115807642 4.000000e-03 54.7
28 TraesCS7B01G309700 chr2B 87.789 475 38 9 6917 7377 227175246 227174778 8.590000e-149 538.0
29 TraesCS7B01G309700 chr3B 91.688 385 29 3 7101 7484 406134659 406134277 1.440000e-146 531.0
30 TraesCS7B01G309700 chr3B 95.513 156 7 0 1 156 197761394 197761239 4.510000e-62 250.0
31 TraesCS7B01G309700 chr3B 88.770 187 8 4 170 355 197732785 197732611 4.570000e-52 217.0
32 TraesCS7B01G309700 chr4B 83.019 159 19 4 5651 5808 255359615 255359766 3.660000e-28 137.0
33 TraesCS7B01G309700 chr6A 84.252 127 11 2 5505 5623 602155709 602155584 1.720000e-21 115.0
34 TraesCS7B01G309700 chr3A 90.411 73 5 2 288 358 20311605 20311533 2.230000e-15 95.3
35 TraesCS7B01G309700 chr4A 97.872 47 1 0 309 355 675765887 675765933 1.740000e-11 82.4
36 TraesCS7B01G309700 chr4A 97.872 47 1 0 309 355 729436128 729436174 1.740000e-11 82.4
37 TraesCS7B01G309700 chr4A 92.593 54 3 1 309 362 721367177 721367125 8.100000e-10 76.8
38 TraesCS7B01G309700 chr5A 96.970 33 1 0 641 673 453521387 453521419 1.000000e-03 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G309700 chr7B 553637305 553644828 7523 True 13895.00 13895 100.00000 1 7524 1 chr7B.!!$R1 7523
1 TraesCS7B01G309700 chr7B 320118747 320119266 519 False 219.50 228 90.59200 1 355 2 chr7B.!!$F4 354
2 TraesCS7B01G309700 chr7D 520413026 520420119 7093 True 2426.25 7236 92.36025 355 7524 4 chr7D.!!$R1 7169
3 TraesCS7B01G309700 chr7A 596730165 596737857 7692 True 2607.00 3168 93.01500 357 7524 4 chr7A.!!$R1 7167

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
300 301 0.032952 TTCGACGAACAGGTGGGAAG 59.967 55.000 6.10 0.00 0.00 3.46 F
301 302 0.824595 TCGACGAACAGGTGGGAAGA 60.825 55.000 0.00 0.00 0.00 2.87 F
302 303 0.032952 CGACGAACAGGTGGGAAGAA 59.967 55.000 0.00 0.00 0.00 2.52 F
1080 1326 1.070134 TCTCCCAACTCAAAGTCCACG 59.930 52.381 0.00 0.00 0.00 4.94 F
1112 1358 1.503784 CTACCCCATCTACTCCCCTCA 59.496 57.143 0.00 0.00 0.00 3.86 F
2854 3310 0.885196 TTTTTCCCTTCCGCATTCCG 59.115 50.000 0.00 0.00 0.00 4.30 F
2861 3317 3.118334 TCCCTTCCGCATTCCGTTTAATA 60.118 43.478 0.00 0.00 34.38 0.98 F
4479 5146 0.461961 ACTGATCTAGGCCTTGTCGC 59.538 55.000 12.58 3.63 0.00 5.19 F
5898 6598 0.036952 TTCAGCTCCACTGCTACAGC 60.037 55.000 0.00 0.00 46.76 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1403 1653 0.909610 ATTTCTCCAGCGGGGTCTCA 60.910 55.000 2.05 0.0 38.11 3.27 R
1412 1662 2.092429 TCACATACCCCATTTCTCCAGC 60.092 50.000 0.00 0.0 0.00 4.85 R
1536 1786 3.194542 CCCAGGAGAGAACTTACTGACAG 59.805 52.174 0.00 0.0 35.17 3.51 R
2840 3296 1.455248 TTAAACGGAATGCGGAAGGG 58.545 50.000 0.00 0.0 0.00 3.95 R
2865 3321 2.161855 TGAGTTGTGGATGCAATGACC 58.838 47.619 0.00 0.0 0.00 4.02 R
4458 5125 2.100916 GCGACAAGGCCTAGATCAGTAA 59.899 50.000 5.16 0.0 0.00 2.24 R
4515 5182 2.282180 GTGCCGGATGTTGTGGGT 60.282 61.111 5.05 0.0 0.00 4.51 R
6192 7065 0.179225 GCATGAACAGCGTGTTACCG 60.179 55.000 0.00 0.0 41.28 4.02 R
7370 8278 0.323542 GGGGACTGGAGACGAGAAGA 60.324 60.000 0.00 0.0 0.00 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 3.558674 GGACATCCCAGTGTTCAGG 57.441 57.895 0.00 0.00 31.16 3.86
28 29 0.693049 GGACATCCCAGTGTTCAGGT 59.307 55.000 0.00 0.00 31.16 4.00
29 30 1.611673 GGACATCCCAGTGTTCAGGTG 60.612 57.143 0.00 0.00 31.16 4.00
30 31 0.401738 ACATCCCAGTGTTCAGGTGG 59.598 55.000 0.00 0.00 0.00 4.61
31 32 0.962356 CATCCCAGTGTTCAGGTGGC 60.962 60.000 0.00 0.00 0.00 5.01
32 33 2.142292 ATCCCAGTGTTCAGGTGGCC 62.142 60.000 0.00 0.00 0.00 5.36
33 34 2.669569 CCAGTGTTCAGGTGGCCG 60.670 66.667 0.00 0.00 0.00 6.13
34 35 2.425592 CAGTGTTCAGGTGGCCGA 59.574 61.111 0.00 0.00 0.00 5.54
35 36 1.669115 CAGTGTTCAGGTGGCCGAG 60.669 63.158 0.00 0.00 0.00 4.63
36 37 2.358737 GTGTTCAGGTGGCCGAGG 60.359 66.667 0.00 0.00 0.00 4.63
37 38 3.636231 TGTTCAGGTGGCCGAGGG 61.636 66.667 0.00 0.00 0.00 4.30
54 55 4.114997 GCGTTGGGTTGCCATCGG 62.115 66.667 0.00 0.00 34.64 4.18
55 56 3.439540 CGTTGGGTTGCCATCGGG 61.440 66.667 0.00 0.00 37.18 5.14
56 57 3.068064 GTTGGGTTGCCATCGGGG 61.068 66.667 0.00 0.00 40.85 5.73
81 82 1.358402 CTCTGGCTGAGGATCGACG 59.642 63.158 13.11 0.00 38.61 5.12
82 83 1.378646 TCTGGCTGAGGATCGACGT 60.379 57.895 0.00 0.00 38.61 4.34
83 84 0.107361 TCTGGCTGAGGATCGACGTA 60.107 55.000 0.00 0.00 38.61 3.57
84 85 0.309302 CTGGCTGAGGATCGACGTAG 59.691 60.000 0.00 0.00 38.61 3.51
85 86 1.101635 TGGCTGAGGATCGACGTAGG 61.102 60.000 0.00 0.00 38.61 3.18
86 87 1.655329 GCTGAGGATCGACGTAGGG 59.345 63.158 0.00 0.00 38.61 3.53
87 88 1.102222 GCTGAGGATCGACGTAGGGT 61.102 60.000 0.00 0.00 38.61 4.34
88 89 0.663688 CTGAGGATCGACGTAGGGTG 59.336 60.000 0.00 0.00 38.61 4.61
89 90 0.750546 TGAGGATCGACGTAGGGTGG 60.751 60.000 0.00 0.00 38.61 4.61
90 91 0.750911 GAGGATCGACGTAGGGTGGT 60.751 60.000 0.00 0.00 0.00 4.16
91 92 1.035932 AGGATCGACGTAGGGTGGTG 61.036 60.000 0.00 0.00 0.00 4.17
92 93 1.436336 GATCGACGTAGGGTGGTGG 59.564 63.158 0.00 0.00 0.00 4.61
93 94 2.012902 GATCGACGTAGGGTGGTGGG 62.013 65.000 0.00 0.00 0.00 4.61
94 95 2.503846 ATCGACGTAGGGTGGTGGGA 62.504 60.000 0.00 0.00 0.00 4.37
95 96 2.707849 CGACGTAGGGTGGTGGGAG 61.708 68.421 0.00 0.00 0.00 4.30
96 97 3.001406 ACGTAGGGTGGTGGGAGC 61.001 66.667 0.00 0.00 0.00 4.70
97 98 3.000819 CGTAGGGTGGTGGGAGCA 61.001 66.667 0.00 0.00 0.00 4.26
98 99 2.990479 GTAGGGTGGTGGGAGCAG 59.010 66.667 0.00 0.00 0.00 4.24
99 100 3.009115 TAGGGTGGTGGGAGCAGC 61.009 66.667 0.00 0.00 42.72 5.25
105 106 4.101448 GGTGGGAGCAGCGGACAT 62.101 66.667 0.00 0.00 0.00 3.06
106 107 2.821366 GTGGGAGCAGCGGACATG 60.821 66.667 0.00 0.00 0.00 3.21
107 108 4.100084 TGGGAGCAGCGGACATGG 62.100 66.667 0.00 0.00 0.00 3.66
109 110 4.783621 GGAGCAGCGGACATGGCA 62.784 66.667 0.00 0.00 0.00 4.92
110 111 2.515523 GAGCAGCGGACATGGCAT 60.516 61.111 0.00 0.00 0.00 4.40
111 112 2.515523 AGCAGCGGACATGGCATC 60.516 61.111 0.00 0.00 0.00 3.91
112 113 3.589881 GCAGCGGACATGGCATCC 61.590 66.667 0.00 0.00 0.00 3.51
113 114 2.191375 CAGCGGACATGGCATCCT 59.809 61.111 0.00 0.00 33.70 3.24
114 115 1.890979 CAGCGGACATGGCATCCTC 60.891 63.158 0.00 0.00 33.70 3.71
115 116 2.592861 GCGGACATGGCATCCTCC 60.593 66.667 0.00 3.71 33.70 4.30
116 117 2.910360 CGGACATGGCATCCTCCA 59.090 61.111 17.15 0.00 40.97 3.86
122 123 1.540166 ATGGCATCCTCCATGGTGG 59.460 57.895 24.44 24.44 44.72 4.61
123 124 2.520260 GGCATCCTCCATGGTGGC 60.520 66.667 25.38 17.84 37.47 5.01
124 125 2.276409 GCATCCTCCATGGTGGCA 59.724 61.111 25.38 15.59 37.47 4.92
125 126 1.152610 GCATCCTCCATGGTGGCAT 60.153 57.895 25.38 16.94 37.47 4.40
126 127 1.461091 GCATCCTCCATGGTGGCATG 61.461 60.000 25.38 25.41 37.47 4.06
127 128 0.184211 CATCCTCCATGGTGGCATGA 59.816 55.000 25.38 10.77 37.47 3.07
128 129 0.477204 ATCCTCCATGGTGGCATGAG 59.523 55.000 25.38 7.62 37.47 2.90
129 130 1.826921 CCTCCATGGTGGCATGAGC 60.827 63.158 19.59 0.00 37.47 4.26
130 131 1.226542 CTCCATGGTGGCATGAGCT 59.773 57.895 12.58 0.00 41.70 4.09
131 132 0.395311 CTCCATGGTGGCATGAGCTT 60.395 55.000 12.58 0.00 41.70 3.74
132 133 0.918258 TCCATGGTGGCATGAGCTTA 59.082 50.000 12.58 0.00 41.70 3.09
133 134 1.284491 TCCATGGTGGCATGAGCTTAA 59.716 47.619 12.58 0.00 41.70 1.85
134 135 2.091720 TCCATGGTGGCATGAGCTTAAT 60.092 45.455 12.58 0.00 41.70 1.40
135 136 2.696707 CCATGGTGGCATGAGCTTAATT 59.303 45.455 2.57 0.00 41.70 1.40
136 137 3.133362 CCATGGTGGCATGAGCTTAATTT 59.867 43.478 2.57 0.00 41.70 1.82
137 138 3.872511 TGGTGGCATGAGCTTAATTTG 57.127 42.857 0.00 0.00 41.70 2.32
138 139 2.496871 TGGTGGCATGAGCTTAATTTGG 59.503 45.455 0.00 0.00 41.70 3.28
139 140 2.543641 GTGGCATGAGCTTAATTTGGC 58.456 47.619 0.00 0.00 41.70 4.52
140 141 2.094078 GTGGCATGAGCTTAATTTGGCA 60.094 45.455 0.00 3.14 41.70 4.92
141 142 2.166870 TGGCATGAGCTTAATTTGGCAG 59.833 45.455 0.00 0.00 41.70 4.85
142 143 2.199236 GCATGAGCTTAATTTGGCAGC 58.801 47.619 0.00 0.00 37.91 5.25
143 144 2.456989 CATGAGCTTAATTTGGCAGCG 58.543 47.619 0.00 0.00 38.66 5.18
144 145 1.533625 TGAGCTTAATTTGGCAGCGT 58.466 45.000 0.00 0.00 38.66 5.07
145 146 2.705730 TGAGCTTAATTTGGCAGCGTA 58.294 42.857 0.00 0.00 38.66 4.42
146 147 2.677836 TGAGCTTAATTTGGCAGCGTAG 59.322 45.455 0.00 0.00 38.66 3.51
147 148 2.017049 AGCTTAATTTGGCAGCGTAGG 58.983 47.619 5.39 0.00 38.66 3.18
148 149 1.533965 GCTTAATTTGGCAGCGTAGGC 60.534 52.381 0.00 0.00 40.37 3.93
158 159 2.047274 GCGTAGGCTTGAGTGGCA 60.047 61.111 0.00 0.00 35.83 4.92
159 160 2.391389 GCGTAGGCTTGAGTGGCAC 61.391 63.158 10.29 10.29 35.83 5.01
160 161 1.293498 CGTAGGCTTGAGTGGCACT 59.707 57.895 22.26 22.26 34.73 4.40
161 162 1.016130 CGTAGGCTTGAGTGGCACTG 61.016 60.000 27.45 12.21 34.73 3.66
162 163 0.321671 GTAGGCTTGAGTGGCACTGA 59.678 55.000 27.45 15.29 34.73 3.41
163 164 1.065854 GTAGGCTTGAGTGGCACTGAT 60.066 52.381 27.45 3.73 34.73 2.90
164 165 0.403271 AGGCTTGAGTGGCACTGATT 59.597 50.000 27.45 0.00 34.73 2.57
165 166 1.202976 AGGCTTGAGTGGCACTGATTT 60.203 47.619 27.45 0.00 34.73 2.17
166 167 1.068055 GGCTTGAGTGGCACTGATTTG 60.068 52.381 27.45 11.06 0.00 2.32
167 168 1.668047 GCTTGAGTGGCACTGATTTGC 60.668 52.381 27.45 16.93 42.18 3.68
168 169 1.610038 CTTGAGTGGCACTGATTTGCA 59.390 47.619 27.45 12.77 44.94 4.08
185 186 9.815936 CTGATTTGCAGGAAACAAATAAAAATC 57.184 29.630 1.98 0.00 45.33 2.17
186 187 9.334947 TGATTTGCAGGAAACAAATAAAAATCA 57.665 25.926 1.98 0.00 45.33 2.57
209 210 8.821686 TCATTAATTAAGCCTGATTTGAAGGA 57.178 30.769 3.94 0.00 36.91 3.36
210 211 9.253832 TCATTAATTAAGCCTGATTTGAAGGAA 57.746 29.630 3.94 0.00 36.91 3.36
211 212 9.874205 CATTAATTAAGCCTGATTTGAAGGAAA 57.126 29.630 3.94 0.00 36.91 3.13
215 216 7.781324 TTAAGCCTGATTTGAAGGAAAATCT 57.219 32.000 10.14 0.00 43.81 2.40
216 217 5.656213 AGCCTGATTTGAAGGAAAATCTG 57.344 39.130 10.14 9.36 43.81 2.90
217 218 5.082425 AGCCTGATTTGAAGGAAAATCTGT 58.918 37.500 10.14 0.00 43.81 3.41
218 219 5.541484 AGCCTGATTTGAAGGAAAATCTGTT 59.459 36.000 10.14 0.00 43.81 3.16
219 220 5.636543 GCCTGATTTGAAGGAAAATCTGTTG 59.363 40.000 10.14 1.83 43.81 3.33
220 221 6.517194 GCCTGATTTGAAGGAAAATCTGTTGA 60.517 38.462 10.14 0.00 43.81 3.18
221 222 7.436118 CCTGATTTGAAGGAAAATCTGTTGAA 58.564 34.615 10.14 0.00 43.81 2.69
222 223 7.927629 CCTGATTTGAAGGAAAATCTGTTGAAA 59.072 33.333 10.14 0.00 43.81 2.69
223 224 9.316730 CTGATTTGAAGGAAAATCTGTTGAAAA 57.683 29.630 10.14 0.00 43.81 2.29
224 225 9.316730 TGATTTGAAGGAAAATCTGTTGAAAAG 57.683 29.630 10.14 0.00 43.81 2.27
225 226 9.533253 GATTTGAAGGAAAATCTGTTGAAAAGA 57.467 29.630 0.00 0.00 41.40 2.52
226 227 9.889128 ATTTGAAGGAAAATCTGTTGAAAAGAA 57.111 25.926 0.00 0.00 0.00 2.52
227 228 8.931385 TTGAAGGAAAATCTGTTGAAAAGAAG 57.069 30.769 0.00 0.00 0.00 2.85
228 229 7.491682 TGAAGGAAAATCTGTTGAAAAGAAGG 58.508 34.615 0.00 0.00 0.00 3.46
229 230 7.341769 TGAAGGAAAATCTGTTGAAAAGAAGGA 59.658 33.333 0.00 0.00 0.00 3.36
230 231 7.660030 AGGAAAATCTGTTGAAAAGAAGGAA 57.340 32.000 0.00 0.00 0.00 3.36
231 232 8.078060 AGGAAAATCTGTTGAAAAGAAGGAAA 57.922 30.769 0.00 0.00 0.00 3.13
232 233 8.539544 AGGAAAATCTGTTGAAAAGAAGGAAAA 58.460 29.630 0.00 0.00 0.00 2.29
233 234 9.161629 GGAAAATCTGTTGAAAAGAAGGAAAAA 57.838 29.630 0.00 0.00 0.00 1.94
252 253 2.834638 AATTGAGATGGAAGGGGTGG 57.165 50.000 0.00 0.00 0.00 4.61
253 254 1.985622 ATTGAGATGGAAGGGGTGGA 58.014 50.000 0.00 0.00 0.00 4.02
254 255 0.991920 TTGAGATGGAAGGGGTGGAC 59.008 55.000 0.00 0.00 0.00 4.02
255 256 1.264749 TGAGATGGAAGGGGTGGACG 61.265 60.000 0.00 0.00 0.00 4.79
256 257 0.976073 GAGATGGAAGGGGTGGACGA 60.976 60.000 0.00 0.00 0.00 4.20
257 258 1.221021 GATGGAAGGGGTGGACGAC 59.779 63.158 0.00 0.00 0.00 4.34
258 259 2.573609 GATGGAAGGGGTGGACGACG 62.574 65.000 0.00 0.00 0.00 5.12
259 260 3.308705 GGAAGGGGTGGACGACGT 61.309 66.667 0.00 0.00 0.00 4.34
260 261 1.978617 GGAAGGGGTGGACGACGTA 60.979 63.158 0.00 0.00 0.00 3.57
261 262 1.213799 GAAGGGGTGGACGACGTAC 59.786 63.158 2.34 2.34 0.00 3.67
262 263 1.228675 AAGGGGTGGACGACGTACT 60.229 57.895 12.27 0.00 0.00 2.73
263 264 0.038166 AAGGGGTGGACGACGTACTA 59.962 55.000 12.27 0.00 0.00 1.82
264 265 0.678048 AGGGGTGGACGACGTACTAC 60.678 60.000 12.27 7.89 0.00 2.73
265 266 0.960364 GGGGTGGACGACGTACTACA 60.960 60.000 12.27 0.97 0.00 2.74
266 267 0.881118 GGGTGGACGACGTACTACAA 59.119 55.000 12.27 0.00 0.00 2.41
267 268 1.401539 GGGTGGACGACGTACTACAAC 60.402 57.143 12.27 6.38 0.00 3.32
277 278 3.302365 CGTACTACAACGGAAGGGAAA 57.698 47.619 0.00 0.00 39.19 3.13
278 279 3.652274 CGTACTACAACGGAAGGGAAAA 58.348 45.455 0.00 0.00 39.19 2.29
279 280 3.676646 CGTACTACAACGGAAGGGAAAAG 59.323 47.826 0.00 0.00 39.19 2.27
280 281 3.136009 ACTACAACGGAAGGGAAAAGG 57.864 47.619 0.00 0.00 0.00 3.11
281 282 2.440627 ACTACAACGGAAGGGAAAAGGT 59.559 45.455 0.00 0.00 0.00 3.50
282 283 2.447408 ACAACGGAAGGGAAAAGGTT 57.553 45.000 0.00 0.00 0.00 3.50
283 284 2.304092 ACAACGGAAGGGAAAAGGTTC 58.696 47.619 0.00 0.00 0.00 3.62
284 285 1.265905 CAACGGAAGGGAAAAGGTTCG 59.734 52.381 0.00 0.00 34.28 3.95
285 286 0.760572 ACGGAAGGGAAAAGGTTCGA 59.239 50.000 0.00 0.00 34.28 3.71
286 287 1.154197 CGGAAGGGAAAAGGTTCGAC 58.846 55.000 0.00 0.00 34.28 4.20
287 288 1.154197 GGAAGGGAAAAGGTTCGACG 58.846 55.000 0.00 0.00 34.28 5.12
288 289 1.270465 GGAAGGGAAAAGGTTCGACGA 60.270 52.381 0.00 0.00 34.28 4.20
289 290 2.486918 GAAGGGAAAAGGTTCGACGAA 58.513 47.619 6.10 6.10 34.28 3.85
290 291 1.875009 AGGGAAAAGGTTCGACGAAC 58.125 50.000 28.38 28.38 41.32 3.95
291 292 1.139455 AGGGAAAAGGTTCGACGAACA 59.861 47.619 34.34 3.99 43.54 3.18
292 293 1.529865 GGGAAAAGGTTCGACGAACAG 59.470 52.381 34.34 0.00 43.54 3.16
293 294 1.529865 GGAAAAGGTTCGACGAACAGG 59.470 52.381 34.34 0.00 43.54 4.00
294 295 2.207590 GAAAAGGTTCGACGAACAGGT 58.792 47.619 34.34 19.71 43.54 4.00
295 296 1.578583 AAAGGTTCGACGAACAGGTG 58.421 50.000 34.34 0.00 43.54 4.00
296 297 0.249741 AAGGTTCGACGAACAGGTGG 60.250 55.000 34.34 0.00 43.54 4.61
297 298 1.666872 GGTTCGACGAACAGGTGGG 60.667 63.158 34.34 0.00 43.54 4.61
298 299 1.364901 GTTCGACGAACAGGTGGGA 59.635 57.895 30.54 0.00 41.62 4.37
299 300 0.249573 GTTCGACGAACAGGTGGGAA 60.250 55.000 30.54 0.00 41.62 3.97
300 301 0.032952 TTCGACGAACAGGTGGGAAG 59.967 55.000 6.10 0.00 0.00 3.46
301 302 0.824595 TCGACGAACAGGTGGGAAGA 60.825 55.000 0.00 0.00 0.00 2.87
302 303 0.032952 CGACGAACAGGTGGGAAGAA 59.967 55.000 0.00 0.00 0.00 2.52
303 304 1.539496 CGACGAACAGGTGGGAAGAAA 60.539 52.381 0.00 0.00 0.00 2.52
304 305 2.567985 GACGAACAGGTGGGAAGAAAA 58.432 47.619 0.00 0.00 0.00 2.29
305 306 3.146847 GACGAACAGGTGGGAAGAAAAT 58.853 45.455 0.00 0.00 0.00 1.82
306 307 3.562182 ACGAACAGGTGGGAAGAAAATT 58.438 40.909 0.00 0.00 0.00 1.82
307 308 3.317993 ACGAACAGGTGGGAAGAAAATTG 59.682 43.478 0.00 0.00 0.00 2.32
308 309 3.568007 CGAACAGGTGGGAAGAAAATTGA 59.432 43.478 0.00 0.00 0.00 2.57
309 310 4.556699 CGAACAGGTGGGAAGAAAATTGAC 60.557 45.833 0.00 0.00 0.00 3.18
310 311 2.884639 ACAGGTGGGAAGAAAATTGACG 59.115 45.455 0.00 0.00 0.00 4.35
311 312 2.884639 CAGGTGGGAAGAAAATTGACGT 59.115 45.455 0.00 0.00 0.00 4.34
312 313 4.069304 CAGGTGGGAAGAAAATTGACGTA 58.931 43.478 0.00 0.00 0.00 3.57
313 314 4.517453 CAGGTGGGAAGAAAATTGACGTAA 59.483 41.667 0.00 0.00 0.00 3.18
315 316 4.758165 GGTGGGAAGAAAATTGACGTAAGA 59.242 41.667 0.00 0.00 43.62 2.10
316 317 5.106673 GGTGGGAAGAAAATTGACGTAAGAG 60.107 44.000 0.00 0.00 43.62 2.85
317 318 5.001232 TGGGAAGAAAATTGACGTAAGAGG 58.999 41.667 0.00 0.00 43.62 3.69
318 319 4.395231 GGGAAGAAAATTGACGTAAGAGGG 59.605 45.833 0.00 0.00 43.62 4.30
319 320 5.243207 GGAAGAAAATTGACGTAAGAGGGA 58.757 41.667 0.00 0.00 43.62 4.20
320 321 5.704053 GGAAGAAAATTGACGTAAGAGGGAA 59.296 40.000 0.00 0.00 43.62 3.97
321 322 6.128254 GGAAGAAAATTGACGTAAGAGGGAAG 60.128 42.308 0.00 0.00 43.62 3.46
322 323 6.110411 AGAAAATTGACGTAAGAGGGAAGA 57.890 37.500 0.00 0.00 43.62 2.87
323 324 6.166982 AGAAAATTGACGTAAGAGGGAAGAG 58.833 40.000 0.00 0.00 43.62 2.85
324 325 4.473477 AATTGACGTAAGAGGGAAGAGG 57.527 45.455 0.00 0.00 43.62 3.69
325 326 1.848652 TGACGTAAGAGGGAAGAGGG 58.151 55.000 0.00 0.00 43.62 4.30
326 327 1.356738 TGACGTAAGAGGGAAGAGGGA 59.643 52.381 0.00 0.00 43.62 4.20
327 328 2.225192 TGACGTAAGAGGGAAGAGGGAA 60.225 50.000 0.00 0.00 43.62 3.97
328 329 2.166050 GACGTAAGAGGGAAGAGGGAAC 59.834 54.545 0.00 0.00 43.62 3.62
349 350 7.776107 GGAACCTTACGTATCTTTTAGGTAGT 58.224 38.462 13.39 1.23 35.05 2.73
350 351 8.903820 GGAACCTTACGTATCTTTTAGGTAGTA 58.096 37.037 13.39 0.00 35.05 1.82
351 352 9.943163 GAACCTTACGTATCTTTTAGGTAGTAG 57.057 37.037 13.39 0.00 35.05 2.57
352 353 9.686683 AACCTTACGTATCTTTTAGGTAGTAGA 57.313 33.333 13.39 0.00 35.05 2.59
353 354 9.336171 ACCTTACGTATCTTTTAGGTAGTAGAG 57.664 37.037 11.76 0.00 34.39 2.43
603 663 3.965292 TCATCTATCTGACGTTCGACC 57.035 47.619 0.00 0.00 0.00 4.79
606 666 4.398358 TCATCTATCTGACGTTCGACCTTT 59.602 41.667 0.00 0.00 0.00 3.11
617 677 3.545078 CGTTCGACCTTTGGTAGTTATCG 59.455 47.826 0.00 0.00 35.25 2.92
682 905 6.438259 TCGTGGTTTTAGTTGTTTTCATGA 57.562 33.333 0.00 0.00 0.00 3.07
722 962 4.624125 GCTAGATAGAAGGTTTGTGGCACT 60.624 45.833 19.83 0.00 0.00 4.40
724 964 5.091261 AGATAGAAGGTTTGTGGCACTAG 57.909 43.478 19.83 0.00 0.00 2.57
777 1017 2.172679 TGCCCCATATTACTATCGCGA 58.827 47.619 13.09 13.09 0.00 5.87
899 1139 2.235546 GCGCTCACGGGGATAATTC 58.764 57.895 0.00 0.00 40.57 2.17
904 1144 3.600388 GCTCACGGGGATAATTCCATAG 58.400 50.000 0.00 0.00 44.60 2.23
918 1158 2.690881 ATAGCCCACGCCCTTCCA 60.691 61.111 0.00 0.00 34.57 3.53
922 1162 3.322466 CCCACGCCCTTCCACTCT 61.322 66.667 0.00 0.00 0.00 3.24
959 1199 2.297033 CACCAGAATTCACAAACCCCTG 59.703 50.000 8.44 0.00 0.00 4.45
960 1200 1.895131 CCAGAATTCACAAACCCCTGG 59.105 52.381 8.44 0.00 34.52 4.45
1074 1320 1.362224 TCCCCTCTCCCAACTCAAAG 58.638 55.000 0.00 0.00 0.00 2.77
1080 1326 1.070134 TCTCCCAACTCAAAGTCCACG 59.930 52.381 0.00 0.00 0.00 4.94
1094 1340 4.215742 CACGCCGATTCCGCCCTA 62.216 66.667 0.00 0.00 0.00 3.53
1095 1341 4.217159 ACGCCGATTCCGCCCTAC 62.217 66.667 0.00 0.00 0.00 3.18
1096 1342 4.963428 CGCCGATTCCGCCCTACC 62.963 72.222 0.00 0.00 0.00 3.18
1097 1343 4.620937 GCCGATTCCGCCCTACCC 62.621 72.222 0.00 0.00 0.00 3.69
1098 1344 3.937447 CCGATTCCGCCCTACCCC 61.937 72.222 0.00 0.00 0.00 4.95
1099 1345 3.158648 CGATTCCGCCCTACCCCA 61.159 66.667 0.00 0.00 0.00 4.96
1112 1358 1.503784 CTACCCCATCTACTCCCCTCA 59.496 57.143 0.00 0.00 0.00 3.86
1121 1370 1.883275 CTACTCCCCTCATAGCTCGTG 59.117 57.143 0.00 0.00 0.00 4.35
1286 1536 2.373921 GGAACCGTTCCTTCCTCCT 58.626 57.895 21.22 0.00 46.57 3.69
1329 1579 1.817740 CGGTCCCCAATTGTGTGAACT 60.818 52.381 4.43 0.00 0.00 3.01
1330 1580 1.613437 GGTCCCCAATTGTGTGAACTG 59.387 52.381 4.43 0.00 0.00 3.16
1331 1581 2.582052 GTCCCCAATTGTGTGAACTGA 58.418 47.619 4.43 0.00 0.00 3.41
1332 1582 2.955660 GTCCCCAATTGTGTGAACTGAA 59.044 45.455 4.43 0.00 0.00 3.02
1333 1583 3.383185 GTCCCCAATTGTGTGAACTGAAA 59.617 43.478 4.43 0.00 0.00 2.69
1461 1711 2.721090 GCTCGTGCACAAGAATTTTGTC 59.279 45.455 18.64 0.00 39.41 3.18
1488 1738 7.718314 TCATGATGCTAATCTAATCAACTTGCT 59.282 33.333 0.00 0.00 34.21 3.91
1536 1786 6.704310 TGGAAATGTCCCTAGTTAGTAACAC 58.296 40.000 15.28 4.87 44.23 3.32
1946 2199 4.631377 TCCTTGATGCATTACACTTCTTCG 59.369 41.667 0.00 0.00 0.00 3.79
1969 2222 5.178623 CGCTGTTCCTTTTCACTTATACACA 59.821 40.000 0.00 0.00 0.00 3.72
1970 2223 6.603095 GCTGTTCCTTTTCACTTATACACAG 58.397 40.000 0.00 0.00 0.00 3.66
2258 2511 3.947868 AGTACAAGATGCAGCAAGATGT 58.052 40.909 4.07 7.36 0.00 3.06
2392 2645 2.159517 GGAACTGAAGTATGCCTTTGCG 60.160 50.000 0.00 0.00 41.78 4.85
2402 2655 1.863267 TGCCTTTGCGTTTCAAATGG 58.137 45.000 0.00 0.00 43.14 3.16
2536 2989 7.745717 AGCCAATAGTTTAGCCTTGTGATATA 58.254 34.615 0.00 0.00 0.00 0.86
2677 3130 8.621532 TTCTTTGATGGTGGCTCATATATTAC 57.378 34.615 0.00 0.00 0.00 1.89
2854 3310 0.885196 TTTTTCCCTTCCGCATTCCG 59.115 50.000 0.00 0.00 0.00 4.30
2861 3317 3.118334 TCCCTTCCGCATTCCGTTTAATA 60.118 43.478 0.00 0.00 34.38 0.98
2865 3321 6.348213 CCCTTCCGCATTCCGTTTAATATTAG 60.348 42.308 0.00 0.00 34.38 1.73
2913 3369 4.504864 GCCCAGTGCCTACATATCACAATA 60.505 45.833 0.00 0.00 33.44 1.90
2917 3373 6.203530 CCAGTGCCTACATATCACAATAACTG 59.796 42.308 0.00 0.00 33.44 3.16
2965 3421 7.962918 GCAGTAATAATGCTGTTTATTATCCCG 59.037 37.037 5.37 0.00 40.94 5.14
2967 3423 6.892658 AATAATGCTGTTTATTATCCCGCA 57.107 33.333 0.00 0.00 31.59 5.69
2968 3424 4.836125 AATGCTGTTTATTATCCCGCAG 57.164 40.909 0.00 0.00 0.00 5.18
3027 3483 3.729966 AGTCTTTCTTGTTCGAAGGACC 58.270 45.455 0.00 0.00 45.66 4.46
3064 3520 4.753610 TGCATTCTAGCTTATGAGTCATGC 59.246 41.667 16.15 11.31 34.10 4.06
3082 3538 6.205853 AGTCATGCGTGGTCTTTTATTTGTTA 59.794 34.615 5.98 0.00 0.00 2.41
3139 3595 4.638865 CACCAAAAGTACATAACCCTAGCC 59.361 45.833 0.00 0.00 0.00 3.93
3143 3599 7.092128 ACCAAAAGTACATAACCCTAGCCTTAT 60.092 37.037 0.00 0.00 0.00 1.73
3159 3615 5.716979 AGCCTTATGAGGTTCCTGTAGATA 58.283 41.667 5.29 0.00 45.44 1.98
3274 3730 5.418524 TCAATGAAAATCGGATTGACCACAT 59.581 36.000 3.59 3.89 38.90 3.21
3278 3734 5.707764 TGAAAATCGGATTGACCACATACAA 59.292 36.000 3.59 0.00 38.90 2.41
3362 3822 5.858381 TCTACTGATTTCTGCACTGAAACT 58.142 37.500 3.47 0.00 38.54 2.66
3664 4128 3.928992 TCAGAACTTAGCAATTGAGCTCG 59.071 43.478 10.34 0.00 45.26 5.03
3889 4353 4.842574 TGGCTGCTAGACATATTTTCACA 58.157 39.130 0.00 0.00 0.00 3.58
4126 4790 5.118990 TGTGATATCTTGGCTTTCAGTAGC 58.881 41.667 3.98 0.00 40.48 3.58
4141 4805 8.119226 GCTTTCAGTAGCACTTATTTATCACTG 58.881 37.037 0.00 0.00 40.89 3.66
4144 4808 7.847096 TCAGTAGCACTTATTTATCACTGGAA 58.153 34.615 0.00 0.00 34.36 3.53
4159 4824 6.325919 TCACTGGAACGCATCTTTATTTTT 57.674 33.333 0.00 0.00 0.00 1.94
4219 4884 5.327732 TGGAGATCTTTCATTTGCCTTCTT 58.672 37.500 0.00 0.00 0.00 2.52
4240 4905 9.132521 CTTCTTTTTGCATTTCGTATTTGATCT 57.867 29.630 0.00 0.00 0.00 2.75
4281 4946 7.999679 TCACTCAGTTTCTTCATTGTGAATTT 58.000 30.769 0.00 0.00 35.59 1.82
4407 5074 9.891828 GTGTCAAACATATTTACAGTTGAATGA 57.108 29.630 0.00 0.00 0.00 2.57
4479 5146 0.461961 ACTGATCTAGGCCTTGTCGC 59.538 55.000 12.58 3.63 0.00 5.19
4515 5182 9.513906 TGTATGAGAGAAAACCATTTATGTTGA 57.486 29.630 0.00 0.00 0.00 3.18
4600 5289 2.019249 TCAGGCTTCTGTTATGCATGC 58.981 47.619 11.82 11.82 39.23 4.06
4764 5454 9.620259 AGACATAATCTCCAAGTTTATTCTTCC 57.380 33.333 0.00 0.00 28.16 3.46
4775 5465 6.428385 AGTTTATTCTTCCGCTTTCTGATG 57.572 37.500 0.00 0.00 0.00 3.07
4861 5551 7.890655 AGAGATAAAGGGCTACTTGTTGAAATT 59.109 33.333 0.00 0.00 39.96 1.82
4879 5569 0.108898 TTGCCATAATGGTTGCGCAC 60.109 50.000 11.12 5.37 40.46 5.34
4915 5605 5.132897 TGAGTTGTTGGATGGTTAATTGC 57.867 39.130 0.00 0.00 0.00 3.56
4923 5613 6.543465 TGTTGGATGGTTAATTGCTCATCTAG 59.457 38.462 12.91 0.00 36.98 2.43
4950 5641 6.124088 GGTTTACATCAACCATTGAGCTAG 57.876 41.667 0.00 0.00 45.12 3.42
5092 5783 6.667007 CAGGTTTTGCATTTTCAAGACTTT 57.333 33.333 0.00 0.00 33.25 2.66
5309 6000 8.243426 TGTGCATACTTTCATTTTCTATTGGTC 58.757 33.333 0.00 0.00 0.00 4.02
5324 6018 2.686816 GGTCGTTTGGGCGTGGATG 61.687 63.158 0.00 0.00 0.00 3.51
5329 6023 0.671251 GTTTGGGCGTGGATGTTCAA 59.329 50.000 0.00 0.00 0.00 2.69
5340 6034 4.306600 GTGGATGTTCAACATGGGTTTTC 58.693 43.478 8.05 0.00 39.27 2.29
5572 6271 7.227156 ACTTTCATTTCTCATGTACCTTCAGT 58.773 34.615 0.00 0.00 0.00 3.41
5643 6342 4.281688 AGCATTGTCTAAGGTGCAAATTGT 59.718 37.500 0.00 0.00 39.94 2.71
5649 6348 6.966021 TGTCTAAGGTGCAAATTGTCTAAAC 58.034 36.000 0.00 0.00 0.00 2.01
5653 6352 4.559153 AGGTGCAAATTGTCTAAACATGC 58.441 39.130 0.00 0.00 38.71 4.06
5865 6565 0.450983 GCTCTGCTTCTCCAACATGC 59.549 55.000 0.00 0.00 0.00 4.06
5898 6598 0.036952 TTCAGCTCCACTGCTACAGC 60.037 55.000 0.00 0.00 46.76 4.40
5916 6616 1.369091 GCACCACATAACCTCAGCGG 61.369 60.000 0.00 0.00 39.35 5.52
5968 6668 0.179119 CGGGCCTTGTAGGTAGAACG 60.179 60.000 0.84 0.00 37.80 3.95
6077 6777 5.444218 GCTCTGTAAAATAGAACCACGTTCG 60.444 44.000 0.00 0.00 45.96 3.95
6098 6798 2.887152 GACAACTTCCAAGCATGTCCTT 59.113 45.455 11.94 0.00 38.88 3.36
6111 6811 1.352083 TGTCCTTGGCTACTCTTGCT 58.648 50.000 0.00 0.00 0.00 3.91
6112 6812 1.699634 TGTCCTTGGCTACTCTTGCTT 59.300 47.619 0.00 0.00 0.00 3.91
6113 6813 2.903784 TGTCCTTGGCTACTCTTGCTTA 59.096 45.455 0.00 0.00 0.00 3.09
6114 6814 3.055819 TGTCCTTGGCTACTCTTGCTTAG 60.056 47.826 0.00 0.00 0.00 2.18
6115 6815 3.055747 GTCCTTGGCTACTCTTGCTTAGT 60.056 47.826 0.00 0.00 0.00 2.24
6116 6816 4.159879 GTCCTTGGCTACTCTTGCTTAGTA 59.840 45.833 0.00 0.00 0.00 1.82
6117 6817 4.402793 TCCTTGGCTACTCTTGCTTAGTAG 59.597 45.833 13.22 13.22 46.09 2.57
6118 6818 4.442192 CCTTGGCTACTCTTGCTTAGTAGG 60.442 50.000 16.97 4.75 44.36 3.18
6120 6820 4.863548 TGGCTACTCTTGCTTAGTAGGTA 58.136 43.478 16.97 6.33 44.36 3.08
6121 6821 5.455872 TGGCTACTCTTGCTTAGTAGGTAT 58.544 41.667 16.97 0.00 44.36 2.73
6122 6822 5.897824 TGGCTACTCTTGCTTAGTAGGTATT 59.102 40.000 16.97 0.00 44.36 1.89
6128 6996 6.668283 ACTCTTGCTTAGTAGGTATTCTTCCA 59.332 38.462 0.00 0.00 0.00 3.53
6169 7037 1.659335 CGTTTGCTGCACCTTGCTG 60.659 57.895 0.00 0.08 45.31 4.41
6214 7087 1.468520 GTAACACGCTGTTCATGCCAT 59.531 47.619 6.64 0.00 40.22 4.40
6223 7096 3.118884 GCTGTTCATGCCATTTCCAGATT 60.119 43.478 0.00 0.00 0.00 2.40
6226 7099 4.773674 TGTTCATGCCATTTCCAGATTCTT 59.226 37.500 0.00 0.00 0.00 2.52
6247 7120 3.711059 ATACGTCCCCGACCTCGCT 62.711 63.158 0.00 0.00 38.18 4.93
6259 7132 2.712539 CTCGCTCAGTCGATCGCT 59.287 61.111 11.09 8.28 37.87 4.93
6280 7153 0.103208 GCCTGATCTCGTCGTCCAAT 59.897 55.000 0.00 0.00 0.00 3.16
6298 7171 2.060050 ATGACCGAGAGTTCCGAGAT 57.940 50.000 0.00 0.00 0.00 2.75
6338 7211 2.525629 TGGGCTCCGGTCAAGACA 60.526 61.111 0.00 0.00 0.00 3.41
6536 7412 7.525688 TTTGATTTCTAGCATCGTAGTCAAG 57.474 36.000 0.00 0.00 0.00 3.02
6556 7432 6.260493 GTCAAGTAGGAGTATGATACGACAGT 59.740 42.308 0.00 0.00 0.00 3.55
6558 7434 6.177310 AGTAGGAGTATGATACGACAGTCT 57.823 41.667 0.00 0.00 0.00 3.24
6559 7435 6.593807 AGTAGGAGTATGATACGACAGTCTT 58.406 40.000 0.00 0.00 0.00 3.01
6583 7459 9.384764 CTTTGCTAGATAAGTTTATATAGGCCC 57.615 37.037 0.00 1.52 36.15 5.80
6584 7460 7.108841 TGCTAGATAAGTTTATATAGGCCCG 57.891 40.000 0.00 0.00 36.15 6.13
6597 7476 2.594592 GCCCGGCTGACAAGTGTT 60.595 61.111 0.71 0.00 0.00 3.32
6598 7477 2.193536 GCCCGGCTGACAAGTGTTT 61.194 57.895 0.71 0.00 0.00 2.83
6716 7595 4.815308 CAGATTTGACCTAGATCCAAGCTG 59.185 45.833 2.04 2.04 33.22 4.24
6726 7605 5.420104 CCTAGATCCAAGCTGAAATTTGGTT 59.580 40.000 0.00 0.00 43.43 3.67
6823 7714 2.048597 GTGGACGGATGCGTGTGA 60.049 61.111 19.71 0.00 0.00 3.58
6902 7796 2.885861 CTTGACCGGTCCTCCTCG 59.114 66.667 31.19 9.49 0.00 4.63
6936 7834 0.464554 GAACCTAGCCATCAGCCCAC 60.465 60.000 0.00 0.00 45.47 4.61
6937 7835 1.926426 AACCTAGCCATCAGCCCACC 61.926 60.000 0.00 0.00 45.47 4.61
6938 7836 2.074948 CCTAGCCATCAGCCCACCT 61.075 63.158 0.00 0.00 45.47 4.00
6939 7837 1.449353 CTAGCCATCAGCCCACCTC 59.551 63.158 0.00 0.00 45.47 3.85
6988 7893 1.379843 CCCAGAAATCCCCAACCCG 60.380 63.158 0.00 0.00 0.00 5.28
6989 7894 1.688811 CCAGAAATCCCCAACCCGA 59.311 57.895 0.00 0.00 0.00 5.14
7367 8275 5.163447 CCGAGTTCAAGTTCTGGTATATCCA 60.163 44.000 0.00 0.00 45.01 3.41
7368 8276 6.463049 CCGAGTTCAAGTTCTGGTATATCCAT 60.463 42.308 0.00 0.00 46.12 3.41
7370 8278 7.470702 CGAGTTCAAGTTCTGGTATATCCATCT 60.471 40.741 0.00 0.00 46.12 2.90
7383 8307 2.808906 TCCATCTCTTCTCGTCTCCA 57.191 50.000 0.00 0.00 0.00 3.86
7413 8337 6.145858 CCTTTGATTTGATTGCGTGAAATTGA 59.854 34.615 0.00 0.00 0.00 2.57
7418 8342 4.961435 TGATTGCGTGAAATTGATGCTA 57.039 36.364 0.00 0.00 0.00 3.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
13 14 1.380302 GCCACCTGAACACTGGGAT 59.620 57.895 0.00 0.00 0.00 3.85
14 15 2.829384 GGCCACCTGAACACTGGGA 61.829 63.158 0.00 0.00 0.00 4.37
15 16 2.282462 GGCCACCTGAACACTGGG 60.282 66.667 0.00 0.00 0.00 4.45
16 17 2.669569 CGGCCACCTGAACACTGG 60.670 66.667 2.24 0.00 0.00 4.00
17 18 1.669115 CTCGGCCACCTGAACACTG 60.669 63.158 2.24 0.00 0.00 3.66
18 19 2.743718 CTCGGCCACCTGAACACT 59.256 61.111 2.24 0.00 0.00 3.55
19 20 2.358737 CCTCGGCCACCTGAACAC 60.359 66.667 2.24 0.00 0.00 3.32
20 21 3.636231 CCCTCGGCCACCTGAACA 61.636 66.667 2.24 0.00 0.00 3.18
39 40 3.068064 CCCCGATGGCAACCCAAC 61.068 66.667 0.00 0.00 46.14 3.77
63 64 1.358402 CGTCGATCCTCAGCCAGAG 59.642 63.158 0.00 0.00 44.31 3.35
64 65 0.107361 TACGTCGATCCTCAGCCAGA 60.107 55.000 0.00 0.00 0.00 3.86
65 66 0.309302 CTACGTCGATCCTCAGCCAG 59.691 60.000 0.00 0.00 0.00 4.85
66 67 1.101635 CCTACGTCGATCCTCAGCCA 61.102 60.000 0.00 0.00 0.00 4.75
67 68 1.655329 CCTACGTCGATCCTCAGCC 59.345 63.158 0.00 0.00 0.00 4.85
68 69 1.102222 ACCCTACGTCGATCCTCAGC 61.102 60.000 0.00 0.00 0.00 4.26
69 70 0.663688 CACCCTACGTCGATCCTCAG 59.336 60.000 0.00 0.00 0.00 3.35
70 71 0.750546 CCACCCTACGTCGATCCTCA 60.751 60.000 0.00 0.00 0.00 3.86
71 72 0.750911 ACCACCCTACGTCGATCCTC 60.751 60.000 0.00 0.00 0.00 3.71
72 73 1.035932 CACCACCCTACGTCGATCCT 61.036 60.000 0.00 0.00 0.00 3.24
73 74 1.436336 CACCACCCTACGTCGATCC 59.564 63.158 0.00 0.00 0.00 3.36
74 75 1.436336 CCACCACCCTACGTCGATC 59.564 63.158 0.00 0.00 0.00 3.69
75 76 2.056223 CCCACCACCCTACGTCGAT 61.056 63.158 0.00 0.00 0.00 3.59
76 77 2.677524 CCCACCACCCTACGTCGA 60.678 66.667 0.00 0.00 0.00 4.20
77 78 2.677524 TCCCACCACCCTACGTCG 60.678 66.667 0.00 0.00 0.00 5.12
78 79 3.015312 GCTCCCACCACCCTACGTC 62.015 68.421 0.00 0.00 0.00 4.34
79 80 3.001406 GCTCCCACCACCCTACGT 61.001 66.667 0.00 0.00 0.00 3.57
80 81 3.000819 TGCTCCCACCACCCTACG 61.001 66.667 0.00 0.00 0.00 3.51
81 82 2.990479 CTGCTCCCACCACCCTAC 59.010 66.667 0.00 0.00 0.00 3.18
82 83 3.009115 GCTGCTCCCACCACCCTA 61.009 66.667 0.00 0.00 0.00 3.53
88 89 4.101448 ATGTCCGCTGCTCCCACC 62.101 66.667 0.00 0.00 0.00 4.61
89 90 2.821366 CATGTCCGCTGCTCCCAC 60.821 66.667 0.00 0.00 0.00 4.61
90 91 4.100084 CCATGTCCGCTGCTCCCA 62.100 66.667 0.00 0.00 0.00 4.37
92 93 4.783621 TGCCATGTCCGCTGCTCC 62.784 66.667 0.00 0.00 0.00 4.70
93 94 2.515523 ATGCCATGTCCGCTGCTC 60.516 61.111 0.00 0.00 0.00 4.26
94 95 2.515523 GATGCCATGTCCGCTGCT 60.516 61.111 0.00 0.00 0.00 4.24
95 96 3.589881 GGATGCCATGTCCGCTGC 61.590 66.667 0.00 0.00 0.00 5.25
96 97 1.890979 GAGGATGCCATGTCCGCTG 60.891 63.158 0.00 0.00 40.76 5.18
97 98 2.507944 GAGGATGCCATGTCCGCT 59.492 61.111 0.00 0.00 40.76 5.52
98 99 2.592861 GGAGGATGCCATGTCCGC 60.593 66.667 0.00 0.00 40.76 5.54
99 100 1.453235 ATGGAGGATGCCATGTCCG 59.547 57.895 0.00 0.00 46.62 4.79
105 106 3.009275 CCACCATGGAGGATGCCA 58.991 61.111 22.85 0.00 40.96 4.92
106 107 2.520260 GCCACCATGGAGGATGCC 60.520 66.667 30.29 9.90 40.96 4.40
107 108 1.152610 ATGCCACCATGGAGGATGC 60.153 57.895 30.29 15.91 40.96 3.91
108 109 0.184211 TCATGCCACCATGGAGGATG 59.816 55.000 30.29 26.95 47.00 3.51
109 110 0.477204 CTCATGCCACCATGGAGGAT 59.523 55.000 30.29 18.31 47.00 3.24
110 111 1.917495 CTCATGCCACCATGGAGGA 59.083 57.895 30.29 16.85 47.00 3.71
111 112 1.826921 GCTCATGCCACCATGGAGG 60.827 63.158 22.93 22.93 47.00 4.30
112 113 0.395311 AAGCTCATGCCACCATGGAG 60.395 55.000 21.47 11.19 47.00 3.86
113 114 0.918258 TAAGCTCATGCCACCATGGA 59.082 50.000 21.47 0.00 47.00 3.41
114 115 1.766494 TTAAGCTCATGCCACCATGG 58.234 50.000 11.19 11.19 47.00 3.66
116 117 3.133362 CCAAATTAAGCTCATGCCACCAT 59.867 43.478 0.00 0.00 40.80 3.55
117 118 2.496871 CCAAATTAAGCTCATGCCACCA 59.503 45.455 0.00 0.00 40.80 4.17
118 119 2.739609 GCCAAATTAAGCTCATGCCACC 60.740 50.000 0.00 0.00 40.80 4.61
119 120 2.094078 TGCCAAATTAAGCTCATGCCAC 60.094 45.455 0.00 0.00 40.80 5.01
120 121 2.166870 CTGCCAAATTAAGCTCATGCCA 59.833 45.455 0.00 0.00 40.80 4.92
121 122 2.817901 CTGCCAAATTAAGCTCATGCC 58.182 47.619 0.00 0.00 40.80 4.40
122 123 2.199236 GCTGCCAAATTAAGCTCATGC 58.801 47.619 0.00 0.00 40.05 4.06
123 124 2.159338 ACGCTGCCAAATTAAGCTCATG 60.159 45.455 0.00 0.00 34.72 3.07
124 125 2.094675 ACGCTGCCAAATTAAGCTCAT 58.905 42.857 0.00 0.00 34.72 2.90
125 126 1.533625 ACGCTGCCAAATTAAGCTCA 58.466 45.000 0.00 0.00 34.72 4.26
126 127 2.032178 CCTACGCTGCCAAATTAAGCTC 59.968 50.000 0.00 0.00 34.72 4.09
127 128 2.017049 CCTACGCTGCCAAATTAAGCT 58.983 47.619 0.00 0.00 34.72 3.74
128 129 1.533965 GCCTACGCTGCCAAATTAAGC 60.534 52.381 0.00 0.00 0.00 3.09
129 130 2.017049 AGCCTACGCTGCCAAATTAAG 58.983 47.619 0.00 0.00 46.19 1.85
130 131 2.122783 AGCCTACGCTGCCAAATTAA 57.877 45.000 0.00 0.00 46.19 1.40
131 132 3.873781 AGCCTACGCTGCCAAATTA 57.126 47.368 0.00 0.00 46.19 1.40
132 133 4.743018 AGCCTACGCTGCCAAATT 57.257 50.000 0.00 0.00 46.19 1.82
141 142 2.047274 TGCCACTCAAGCCTACGC 60.047 61.111 0.00 0.00 0.00 4.42
142 143 1.016130 CAGTGCCACTCAAGCCTACG 61.016 60.000 0.00 0.00 0.00 3.51
143 144 0.321671 TCAGTGCCACTCAAGCCTAC 59.678 55.000 0.00 0.00 0.00 3.18
144 145 1.279496 ATCAGTGCCACTCAAGCCTA 58.721 50.000 0.00 0.00 0.00 3.93
145 146 0.403271 AATCAGTGCCACTCAAGCCT 59.597 50.000 0.00 0.00 0.00 4.58
146 147 1.068055 CAAATCAGTGCCACTCAAGCC 60.068 52.381 0.00 0.00 0.00 4.35
147 148 1.668047 GCAAATCAGTGCCACTCAAGC 60.668 52.381 0.00 0.00 38.66 4.01
148 149 1.610038 TGCAAATCAGTGCCACTCAAG 59.390 47.619 0.00 0.00 44.26 3.02
149 150 1.610038 CTGCAAATCAGTGCCACTCAA 59.390 47.619 0.00 0.00 44.26 3.02
150 151 1.241165 CTGCAAATCAGTGCCACTCA 58.759 50.000 0.00 0.00 44.26 3.41
151 152 0.524862 CCTGCAAATCAGTGCCACTC 59.475 55.000 0.00 0.00 44.26 3.51
152 153 0.111061 TCCTGCAAATCAGTGCCACT 59.889 50.000 0.00 0.00 44.26 4.00
153 154 0.961019 TTCCTGCAAATCAGTGCCAC 59.039 50.000 0.00 0.00 44.26 5.01
154 155 1.340889 GTTTCCTGCAAATCAGTGCCA 59.659 47.619 0.00 0.00 44.26 4.92
155 156 1.340889 TGTTTCCTGCAAATCAGTGCC 59.659 47.619 0.00 0.00 44.26 5.01
156 157 2.798976 TGTTTCCTGCAAATCAGTGC 57.201 45.000 0.00 0.00 45.15 4.40
157 158 7.712264 TTTATTTGTTTCCTGCAAATCAGTG 57.288 32.000 6.55 0.00 43.12 3.66
158 159 8.729805 TTTTTATTTGTTTCCTGCAAATCAGT 57.270 26.923 6.55 0.00 43.12 3.41
159 160 9.815936 GATTTTTATTTGTTTCCTGCAAATCAG 57.184 29.630 6.55 0.00 43.12 2.90
160 161 9.334947 TGATTTTTATTTGTTTCCTGCAAATCA 57.665 25.926 6.55 0.00 43.12 2.57
183 184 9.425248 TCCTTCAAATCAGGCTTAATTAATGAT 57.575 29.630 6.88 6.88 32.11 2.45
184 185 8.821686 TCCTTCAAATCAGGCTTAATTAATGA 57.178 30.769 0.00 0.55 0.00 2.57
185 186 9.874205 TTTCCTTCAAATCAGGCTTAATTAATG 57.126 29.630 0.00 0.00 0.00 1.90
189 190 8.819845 AGATTTTCCTTCAAATCAGGCTTAATT 58.180 29.630 8.47 0.00 43.14 1.40
190 191 8.255905 CAGATTTTCCTTCAAATCAGGCTTAAT 58.744 33.333 8.47 0.00 43.14 1.40
191 192 7.233348 ACAGATTTTCCTTCAAATCAGGCTTAA 59.767 33.333 8.47 0.00 43.14 1.85
192 193 6.721208 ACAGATTTTCCTTCAAATCAGGCTTA 59.279 34.615 8.47 0.00 43.14 3.09
193 194 5.541484 ACAGATTTTCCTTCAAATCAGGCTT 59.459 36.000 8.47 0.00 43.14 4.35
194 195 5.082425 ACAGATTTTCCTTCAAATCAGGCT 58.918 37.500 8.47 0.00 43.14 4.58
195 196 5.397142 ACAGATTTTCCTTCAAATCAGGC 57.603 39.130 8.47 0.00 43.14 4.85
196 197 6.985117 TCAACAGATTTTCCTTCAAATCAGG 58.015 36.000 8.47 3.63 43.14 3.86
197 198 8.876275 TTTCAACAGATTTTCCTTCAAATCAG 57.124 30.769 8.47 3.68 43.14 2.90
198 199 9.316730 CTTTTCAACAGATTTTCCTTCAAATCA 57.683 29.630 8.47 0.00 43.14 2.57
199 200 9.533253 TCTTTTCAACAGATTTTCCTTCAAATC 57.467 29.630 0.00 0.00 41.65 2.17
200 201 9.889128 TTCTTTTCAACAGATTTTCCTTCAAAT 57.111 25.926 0.00 0.00 0.00 2.32
201 202 9.369904 CTTCTTTTCAACAGATTTTCCTTCAAA 57.630 29.630 0.00 0.00 0.00 2.69
202 203 7.981225 CCTTCTTTTCAACAGATTTTCCTTCAA 59.019 33.333 0.00 0.00 0.00 2.69
203 204 7.341769 TCCTTCTTTTCAACAGATTTTCCTTCA 59.658 33.333 0.00 0.00 0.00 3.02
204 205 7.716612 TCCTTCTTTTCAACAGATTTTCCTTC 58.283 34.615 0.00 0.00 0.00 3.46
205 206 7.660030 TCCTTCTTTTCAACAGATTTTCCTT 57.340 32.000 0.00 0.00 0.00 3.36
206 207 7.660030 TTCCTTCTTTTCAACAGATTTTCCT 57.340 32.000 0.00 0.00 0.00 3.36
207 208 8.716646 TTTTCCTTCTTTTCAACAGATTTTCC 57.283 30.769 0.00 0.00 0.00 3.13
230 231 3.840078 CCACCCCTTCCATCTCAATTTTT 59.160 43.478 0.00 0.00 0.00 1.94
231 232 3.077391 TCCACCCCTTCCATCTCAATTTT 59.923 43.478 0.00 0.00 0.00 1.82
232 233 2.654385 TCCACCCCTTCCATCTCAATTT 59.346 45.455 0.00 0.00 0.00 1.82
233 234 2.024941 GTCCACCCCTTCCATCTCAATT 60.025 50.000 0.00 0.00 0.00 2.32
234 235 1.566231 GTCCACCCCTTCCATCTCAAT 59.434 52.381 0.00 0.00 0.00 2.57
235 236 0.991920 GTCCACCCCTTCCATCTCAA 59.008 55.000 0.00 0.00 0.00 3.02
236 237 1.264749 CGTCCACCCCTTCCATCTCA 61.265 60.000 0.00 0.00 0.00 3.27
237 238 0.976073 TCGTCCACCCCTTCCATCTC 60.976 60.000 0.00 0.00 0.00 2.75
238 239 1.080354 TCGTCCACCCCTTCCATCT 59.920 57.895 0.00 0.00 0.00 2.90
239 240 1.221021 GTCGTCCACCCCTTCCATC 59.779 63.158 0.00 0.00 0.00 3.51
240 241 2.656069 CGTCGTCCACCCCTTCCAT 61.656 63.158 0.00 0.00 0.00 3.41
241 242 2.711883 TACGTCGTCCACCCCTTCCA 62.712 60.000 0.00 0.00 0.00 3.53
242 243 1.978617 TACGTCGTCCACCCCTTCC 60.979 63.158 0.00 0.00 0.00 3.46
243 244 1.213799 GTACGTCGTCCACCCCTTC 59.786 63.158 0.00 0.00 0.00 3.46
244 245 0.038166 TAGTACGTCGTCCACCCCTT 59.962 55.000 0.00 0.00 0.00 3.95
245 246 0.678048 GTAGTACGTCGTCCACCCCT 60.678 60.000 0.00 0.00 0.00 4.79
246 247 0.960364 TGTAGTACGTCGTCCACCCC 60.960 60.000 0.00 0.00 0.00 4.95
247 248 0.881118 TTGTAGTACGTCGTCCACCC 59.119 55.000 0.00 0.00 0.00 4.61
248 249 1.725931 CGTTGTAGTACGTCGTCCACC 60.726 57.143 0.00 0.00 36.80 4.61
249 250 1.595609 CGTTGTAGTACGTCGTCCAC 58.404 55.000 0.00 0.00 36.80 4.02
250 251 0.516877 CCGTTGTAGTACGTCGTCCA 59.483 55.000 0.00 0.00 39.81 4.02
251 252 0.796312 TCCGTTGTAGTACGTCGTCC 59.204 55.000 0.00 0.00 39.81 4.79
252 253 2.499896 CTTCCGTTGTAGTACGTCGTC 58.500 52.381 0.00 0.00 39.81 4.20
253 254 1.197721 CCTTCCGTTGTAGTACGTCGT 59.802 52.381 2.21 2.21 39.81 4.34
254 255 1.466360 CCCTTCCGTTGTAGTACGTCG 60.466 57.143 0.00 9.10 39.81 5.12
255 256 1.812571 TCCCTTCCGTTGTAGTACGTC 59.187 52.381 0.00 0.00 39.81 4.34
256 257 1.909700 TCCCTTCCGTTGTAGTACGT 58.090 50.000 0.00 0.00 39.81 3.57
257 258 3.302365 TTTCCCTTCCGTTGTAGTACG 57.698 47.619 0.00 0.00 41.06 3.67
258 259 3.999001 CCTTTTCCCTTCCGTTGTAGTAC 59.001 47.826 0.00 0.00 0.00 2.73
259 260 3.647590 ACCTTTTCCCTTCCGTTGTAGTA 59.352 43.478 0.00 0.00 0.00 1.82
260 261 2.440627 ACCTTTTCCCTTCCGTTGTAGT 59.559 45.455 0.00 0.00 0.00 2.73
261 262 3.136009 ACCTTTTCCCTTCCGTTGTAG 57.864 47.619 0.00 0.00 0.00 2.74
262 263 3.479489 GAACCTTTTCCCTTCCGTTGTA 58.521 45.455 0.00 0.00 0.00 2.41
263 264 2.304092 GAACCTTTTCCCTTCCGTTGT 58.696 47.619 0.00 0.00 0.00 3.32
264 265 1.265905 CGAACCTTTTCCCTTCCGTTG 59.734 52.381 0.00 0.00 0.00 4.10
265 266 1.141455 TCGAACCTTTTCCCTTCCGTT 59.859 47.619 0.00 0.00 0.00 4.44
266 267 0.760572 TCGAACCTTTTCCCTTCCGT 59.239 50.000 0.00 0.00 0.00 4.69
267 268 1.154197 GTCGAACCTTTTCCCTTCCG 58.846 55.000 0.00 0.00 0.00 4.30
268 269 1.154197 CGTCGAACCTTTTCCCTTCC 58.846 55.000 0.00 0.00 0.00 3.46
269 270 2.159327 TCGTCGAACCTTTTCCCTTC 57.841 50.000 0.00 0.00 0.00 3.46
270 271 2.216046 GTTCGTCGAACCTTTTCCCTT 58.784 47.619 24.47 0.00 36.65 3.95
271 272 1.139455 TGTTCGTCGAACCTTTTCCCT 59.861 47.619 29.85 0.00 41.35 4.20
272 273 1.529865 CTGTTCGTCGAACCTTTTCCC 59.470 52.381 29.85 8.11 41.35 3.97
273 274 1.529865 CCTGTTCGTCGAACCTTTTCC 59.470 52.381 29.85 8.79 41.35 3.13
274 275 2.033151 CACCTGTTCGTCGAACCTTTTC 60.033 50.000 29.85 9.46 41.35 2.29
275 276 1.937899 CACCTGTTCGTCGAACCTTTT 59.062 47.619 29.85 12.74 41.35 2.27
276 277 1.578583 CACCTGTTCGTCGAACCTTT 58.421 50.000 29.85 14.33 41.35 3.11
277 278 0.249741 CCACCTGTTCGTCGAACCTT 60.250 55.000 29.85 14.65 41.35 3.50
278 279 1.366366 CCACCTGTTCGTCGAACCT 59.634 57.895 29.85 13.40 41.35 3.50
279 280 1.666872 CCCACCTGTTCGTCGAACC 60.667 63.158 29.85 15.66 41.35 3.62
280 281 0.249573 TTCCCACCTGTTCGTCGAAC 60.250 55.000 27.29 27.29 42.26 3.95
281 282 0.032952 CTTCCCACCTGTTCGTCGAA 59.967 55.000 2.90 2.90 0.00 3.71
282 283 0.824595 TCTTCCCACCTGTTCGTCGA 60.825 55.000 0.00 0.00 0.00 4.20
283 284 0.032952 TTCTTCCCACCTGTTCGTCG 59.967 55.000 0.00 0.00 0.00 5.12
284 285 2.249844 TTTCTTCCCACCTGTTCGTC 57.750 50.000 0.00 0.00 0.00 4.20
285 286 2.721425 TTTTCTTCCCACCTGTTCGT 57.279 45.000 0.00 0.00 0.00 3.85
286 287 3.568007 TCAATTTTCTTCCCACCTGTTCG 59.432 43.478 0.00 0.00 0.00 3.95
287 288 4.556699 CGTCAATTTTCTTCCCACCTGTTC 60.557 45.833 0.00 0.00 0.00 3.18
288 289 3.317993 CGTCAATTTTCTTCCCACCTGTT 59.682 43.478 0.00 0.00 0.00 3.16
289 290 2.884639 CGTCAATTTTCTTCCCACCTGT 59.115 45.455 0.00 0.00 0.00 4.00
290 291 2.884639 ACGTCAATTTTCTTCCCACCTG 59.115 45.455 0.00 0.00 0.00 4.00
291 292 3.223674 ACGTCAATTTTCTTCCCACCT 57.776 42.857 0.00 0.00 0.00 4.00
292 293 4.758165 TCTTACGTCAATTTTCTTCCCACC 59.242 41.667 0.00 0.00 0.00 4.61
293 294 5.106673 CCTCTTACGTCAATTTTCTTCCCAC 60.107 44.000 0.00 0.00 0.00 4.61
294 295 5.001232 CCTCTTACGTCAATTTTCTTCCCA 58.999 41.667 0.00 0.00 0.00 4.37
295 296 4.395231 CCCTCTTACGTCAATTTTCTTCCC 59.605 45.833 0.00 0.00 0.00 3.97
296 297 5.243207 TCCCTCTTACGTCAATTTTCTTCC 58.757 41.667 0.00 0.00 0.00 3.46
297 298 6.649557 TCTTCCCTCTTACGTCAATTTTCTTC 59.350 38.462 0.00 0.00 0.00 2.87
298 299 6.531021 TCTTCCCTCTTACGTCAATTTTCTT 58.469 36.000 0.00 0.00 0.00 2.52
299 300 6.110411 TCTTCCCTCTTACGTCAATTTTCT 57.890 37.500 0.00 0.00 0.00 2.52
300 301 5.351740 CCTCTTCCCTCTTACGTCAATTTTC 59.648 44.000 0.00 0.00 0.00 2.29
301 302 5.246307 CCTCTTCCCTCTTACGTCAATTTT 58.754 41.667 0.00 0.00 0.00 1.82
302 303 4.323562 CCCTCTTCCCTCTTACGTCAATTT 60.324 45.833 0.00 0.00 0.00 1.82
303 304 3.197983 CCCTCTTCCCTCTTACGTCAATT 59.802 47.826 0.00 0.00 0.00 2.32
304 305 2.766828 CCCTCTTCCCTCTTACGTCAAT 59.233 50.000 0.00 0.00 0.00 2.57
305 306 2.176889 CCCTCTTCCCTCTTACGTCAA 58.823 52.381 0.00 0.00 0.00 3.18
306 307 1.356738 TCCCTCTTCCCTCTTACGTCA 59.643 52.381 0.00 0.00 0.00 4.35
307 308 2.140839 TCCCTCTTCCCTCTTACGTC 57.859 55.000 0.00 0.00 0.00 4.34
308 309 2.177734 GTTCCCTCTTCCCTCTTACGT 58.822 52.381 0.00 0.00 0.00 3.57
309 310 1.481363 GGTTCCCTCTTCCCTCTTACG 59.519 57.143 0.00 0.00 0.00 3.18
310 311 2.835389 AGGTTCCCTCTTCCCTCTTAC 58.165 52.381 0.00 0.00 0.00 2.34
311 312 3.579742 AAGGTTCCCTCTTCCCTCTTA 57.420 47.619 0.00 0.00 30.89 2.10
312 313 2.442262 AAGGTTCCCTCTTCCCTCTT 57.558 50.000 0.00 0.00 30.89 2.85
313 314 2.835389 GTAAGGTTCCCTCTTCCCTCT 58.165 52.381 0.00 0.00 30.89 3.69
314 315 1.481363 CGTAAGGTTCCCTCTTCCCTC 59.519 57.143 0.00 0.00 30.89 4.30
315 316 1.203275 ACGTAAGGTTCCCTCTTCCCT 60.203 52.381 0.00 0.00 46.39 4.20
316 317 1.273759 ACGTAAGGTTCCCTCTTCCC 58.726 55.000 0.00 0.00 46.39 3.97
317 318 3.959449 AGATACGTAAGGTTCCCTCTTCC 59.041 47.826 0.00 0.00 46.39 3.46
318 319 5.595257 AAGATACGTAAGGTTCCCTCTTC 57.405 43.478 0.00 0.00 46.39 2.87
319 320 6.370186 AAAAGATACGTAAGGTTCCCTCTT 57.630 37.500 0.00 0.00 46.39 2.85
320 321 6.097981 CCTAAAAGATACGTAAGGTTCCCTCT 59.902 42.308 0.00 0.00 46.39 3.69
321 322 6.127225 ACCTAAAAGATACGTAAGGTTCCCTC 60.127 42.308 8.30 0.00 46.39 4.30
322 323 5.723405 ACCTAAAAGATACGTAAGGTTCCCT 59.277 40.000 8.30 0.00 46.39 4.20
323 324 5.982356 ACCTAAAAGATACGTAAGGTTCCC 58.018 41.667 8.30 0.00 46.39 3.97
324 325 7.776107 ACTACCTAAAAGATACGTAAGGTTCC 58.224 38.462 17.19 0.00 46.39 3.62
325 326 9.943163 CTACTACCTAAAAGATACGTAAGGTTC 57.057 37.037 17.19 3.05 46.39 3.62
326 327 9.686683 TCTACTACCTAAAAGATACGTAAGGTT 57.313 33.333 17.19 5.73 46.39 3.50
327 328 9.336171 CTCTACTACCTAAAAGATACGTAAGGT 57.664 37.037 16.42 16.42 46.39 3.50
328 329 9.553064 TCTCTACTACCTAAAAGATACGTAAGG 57.447 37.037 0.00 3.02 46.39 2.69
368 369 8.971073 TGATGATCATGTACTTATCATATCCGT 58.029 33.333 14.30 0.00 39.76 4.69
515 517 5.583457 AGAATGGCAAATTTAATGAGCAAGC 59.417 36.000 0.00 0.00 0.00 4.01
570 630 7.383300 CGTCAGATAGATGATCATAGCAAAACA 59.617 37.037 8.54 0.00 36.98 2.83
582 642 4.138290 AGGTCGAACGTCAGATAGATGAT 58.862 43.478 0.00 0.00 36.71 2.45
586 646 3.119602 CCAAAGGTCGAACGTCAGATAGA 60.120 47.826 0.00 0.00 0.00 1.98
603 663 7.548196 TTTAGAATGCCGATAACTACCAAAG 57.452 36.000 0.00 0.00 0.00 2.77
606 666 9.214957 CATATTTTAGAATGCCGATAACTACCA 57.785 33.333 0.00 0.00 0.00 3.25
682 905 9.760926 TCTATCTAGCAGGTTACATCTGATTAT 57.239 33.333 0.00 0.00 34.36 1.28
722 962 6.239887 GGCCTACATAGAAAATGGGATCACTA 60.240 42.308 0.00 0.00 0.00 2.74
724 964 4.762251 GGCCTACATAGAAAATGGGATCAC 59.238 45.833 0.00 0.00 0.00 3.06
777 1017 1.673767 ATGGGACTGAGATGGTGGTT 58.326 50.000 0.00 0.00 0.00 3.67
894 1134 0.109723 GGGCGTGGGCTATGGAATTA 59.890 55.000 0.00 0.00 39.81 1.40
899 1139 2.203209 GAAGGGCGTGGGCTATGG 60.203 66.667 0.00 0.00 39.81 2.74
918 1158 4.756458 GCGCTGCTGCTGGAGAGT 62.756 66.667 16.29 0.00 34.29 3.24
943 1183 2.876581 AGACCAGGGGTTTGTGAATTC 58.123 47.619 0.00 0.00 35.25 2.17
959 1199 2.736826 GCCTGCTCTGGGGTAGACC 61.737 68.421 0.00 0.00 39.11 3.85
960 1200 2.904131 GCCTGCTCTGGGGTAGAC 59.096 66.667 0.00 0.00 0.00 2.59
1094 1340 0.952659 ATGAGGGGAGTAGATGGGGT 59.047 55.000 0.00 0.00 0.00 4.95
1095 1341 2.826488 CTATGAGGGGAGTAGATGGGG 58.174 57.143 0.00 0.00 0.00 4.96
1096 1342 2.183679 GCTATGAGGGGAGTAGATGGG 58.816 57.143 0.00 0.00 0.00 4.00
1097 1343 3.096092 GAGCTATGAGGGGAGTAGATGG 58.904 54.545 0.00 0.00 0.00 3.51
1098 1344 2.752354 CGAGCTATGAGGGGAGTAGATG 59.248 54.545 0.00 0.00 0.00 2.90
1099 1345 2.377193 ACGAGCTATGAGGGGAGTAGAT 59.623 50.000 0.00 0.00 0.00 1.98
1280 1530 1.553704 GTAAGCGGAAGGAAAGGAGGA 59.446 52.381 0.00 0.00 0.00 3.71
1284 1534 3.119495 CCAAATGTAAGCGGAAGGAAAGG 60.119 47.826 0.00 0.00 0.00 3.11
1286 1536 3.492337 ACCAAATGTAAGCGGAAGGAAA 58.508 40.909 0.00 0.00 0.00 3.13
1329 1579 3.058293 GTGTCCGAAACTGCATCATTTCA 60.058 43.478 14.85 0.00 35.02 2.69
1330 1580 3.189287 AGTGTCCGAAACTGCATCATTTC 59.811 43.478 7.74 7.74 0.00 2.17
1331 1581 3.058016 CAGTGTCCGAAACTGCATCATTT 60.058 43.478 5.76 0.00 38.72 2.32
1332 1582 2.485426 CAGTGTCCGAAACTGCATCATT 59.515 45.455 5.76 0.00 38.72 2.57
1333 1583 2.079158 CAGTGTCCGAAACTGCATCAT 58.921 47.619 5.76 0.00 38.72 2.45
1403 1653 0.909610 ATTTCTCCAGCGGGGTCTCA 60.910 55.000 2.05 0.00 38.11 3.27
1412 1662 2.092429 TCACATACCCCATTTCTCCAGC 60.092 50.000 0.00 0.00 0.00 4.85
1461 1711 8.016229 GCAAGTTGATTAGATTAGCATCATGAG 58.984 37.037 7.16 0.00 0.00 2.90
1488 1738 8.293867 CCAATACATTAGAACCGAACTTTTCAA 58.706 33.333 0.00 0.00 0.00 2.69
1536 1786 3.194542 CCCAGGAGAGAACTTACTGACAG 59.805 52.174 0.00 0.00 35.17 3.51
1774 2027 7.514784 TCTGAAAGAAATCACATGTCACATT 57.485 32.000 0.00 0.00 42.31 2.71
1946 2199 6.204882 ACTGTGTATAAGTGAAAAGGAACAGC 59.795 38.462 0.00 0.00 35.79 4.40
1969 2222 6.951971 AGATTCTAACATACAGCAGGAAACT 58.048 36.000 0.00 0.00 46.44 2.66
1970 2223 6.818644 TGAGATTCTAACATACAGCAGGAAAC 59.181 38.462 0.00 0.00 0.00 2.78
2258 2511 8.800370 TTTGCATTATTCTTGTATGTGGTAGA 57.200 30.769 0.00 0.00 0.00 2.59
2392 2645 4.671377 TCAATATCAGCGCCATTTGAAAC 58.329 39.130 2.29 0.00 0.00 2.78
2402 2655 2.797156 ACGAAGTCATCAATATCAGCGC 59.203 45.455 0.00 0.00 29.74 5.92
2536 2989 8.267894 CGGGATTCTTATATTGACAGGGATTAT 58.732 37.037 0.00 0.00 0.00 1.28
2677 3130 2.785562 TGTGAAAATGGGTAAGTCGGG 58.214 47.619 0.00 0.00 0.00 5.14
2771 3224 8.926374 TGGCAAGGAAATCATATGAAATGTATT 58.074 29.630 9.99 0.00 0.00 1.89
2840 3296 1.455248 TTAAACGGAATGCGGAAGGG 58.545 50.000 0.00 0.00 0.00 3.95
2854 3310 8.629158 TGTGGATGCAATGACCTAATATTAAAC 58.371 33.333 0.00 0.00 0.00 2.01
2861 3317 4.603131 AGTTGTGGATGCAATGACCTAAT 58.397 39.130 0.00 0.00 0.00 1.73
2865 3321 2.161855 TGAGTTGTGGATGCAATGACC 58.838 47.619 0.00 0.00 0.00 4.02
2917 3373 9.107177 ACTGCTACTATATACATGTATCCGTAC 57.893 37.037 21.49 14.08 0.00 3.67
3027 3483 7.928103 AGCTAGAATGCAATTTGAGTAAGATG 58.072 34.615 0.00 0.00 36.07 2.90
3143 3599 8.840200 AACTTTCTATATCTACAGGAACCTCA 57.160 34.615 0.00 0.00 0.00 3.86
3159 3615 5.869579 TGAAGCCTGTTGAGAACTTTCTAT 58.130 37.500 0.00 0.00 37.73 1.98
3274 3730 8.743714 TGGACATATACACAATGCAAATTTGTA 58.256 29.630 19.03 15.45 35.61 2.41
3278 3734 6.702723 GCATGGACATATACACAATGCAAATT 59.297 34.615 0.00 0.00 33.25 1.82
3362 3822 8.670521 TCTCTATTTAATCAGCAGGGATATCA 57.329 34.615 4.83 0.00 0.00 2.15
3664 4128 3.368843 GCACTTATTGTTTGCTCAATGGC 59.631 43.478 10.78 0.00 38.32 4.40
3854 4318 6.774170 TGTCTAGCAGCCATATCAAATTGAAT 59.226 34.615 0.00 0.00 0.00 2.57
3888 4352 3.947910 AAACAATGTTGGCATCCTCTG 57.052 42.857 0.00 0.00 33.50 3.35
3889 4353 3.555586 GCAAAACAATGTTGGCATCCTCT 60.556 43.478 15.25 0.00 33.50 3.69
4001 4465 5.630121 TGCTCTTTTAGGAGGAAATGAACA 58.370 37.500 0.00 0.00 34.21 3.18
4002 4466 6.765915 ATGCTCTTTTAGGAGGAAATGAAC 57.234 37.500 0.00 0.00 37.24 3.18
4004 4468 6.158695 AGGTATGCTCTTTTAGGAGGAAATGA 59.841 38.462 0.00 0.00 37.24 2.57
4005 4469 6.360618 AGGTATGCTCTTTTAGGAGGAAATG 58.639 40.000 0.00 0.00 37.24 2.32
4006 4470 6.388394 AGAGGTATGCTCTTTTAGGAGGAAAT 59.612 38.462 0.00 0.00 37.24 2.17
4011 4475 5.606348 ACAGAGGTATGCTCTTTTAGGAG 57.394 43.478 0.00 0.00 36.50 3.69
4012 4476 7.676683 ATAACAGAGGTATGCTCTTTTAGGA 57.323 36.000 0.00 0.00 29.99 2.94
4126 4790 5.794687 TGCGTTCCAGTGATAAATAAGTG 57.205 39.130 0.00 0.00 0.00 3.16
4159 4824 7.347222 TCCTTCTAGATATAAGTGCAAGGGAAA 59.653 37.037 0.00 0.00 31.70 3.13
4219 4884 5.576384 GGCAGATCAAATACGAAATGCAAAA 59.424 36.000 0.00 0.00 34.05 2.44
4240 4905 3.244526 TGAGTGATCTGCTTAACAAGGCA 60.245 43.478 0.00 0.00 36.94 4.75
4405 5072 9.378551 GACTTCCAGTGTACAAATATGTATTCA 57.621 33.333 0.00 0.00 43.60 2.57
4407 5074 9.959721 AAGACTTCCAGTGTACAAATATGTATT 57.040 29.630 0.00 0.00 43.60 1.89
4451 5118 6.841755 ACAAGGCCTAGATCAGTAAATAGAGT 59.158 38.462 5.16 0.00 0.00 3.24
4454 5121 6.153067 CGACAAGGCCTAGATCAGTAAATAG 58.847 44.000 5.16 0.00 0.00 1.73
4458 5125 2.100916 GCGACAAGGCCTAGATCAGTAA 59.899 50.000 5.16 0.00 0.00 2.24
4479 5146 7.012327 TGGTTTTCTCTCATACACAACTGAAAG 59.988 37.037 0.00 0.00 42.29 2.62
4515 5182 2.282180 GTGCCGGATGTTGTGGGT 60.282 61.111 5.05 0.00 0.00 4.51
4600 5289 2.872858 GTTAGGAATTAGGAGCCAAGCG 59.127 50.000 0.00 0.00 0.00 4.68
4750 5440 6.241207 TCAGAAAGCGGAAGAATAAACTTG 57.759 37.500 0.00 0.00 0.00 3.16
4822 5512 6.572519 CCCTTTATCTCTTCTTCTGTCTGAG 58.427 44.000 0.00 0.00 0.00 3.35
4861 5551 1.246737 TGTGCGCAACCATTATGGCA 61.247 50.000 14.00 0.00 42.67 4.92
4879 5569 4.761235 ACAACTCAAATCAGATGCAGTG 57.239 40.909 0.00 0.00 0.00 3.66
4915 5605 6.758886 GGTTGATGTAAACCTGACTAGATGAG 59.241 42.308 0.00 0.00 45.25 2.90
4978 5669 7.712797 TGAGATGCGTATGAGTAGTAAAATGA 58.287 34.615 0.00 0.00 0.00 2.57
4995 5686 6.454715 CGATATCACCATAAACATGAGATGCG 60.455 42.308 0.00 0.00 0.00 4.73
4996 5687 6.369890 ACGATATCACCATAAACATGAGATGC 59.630 38.462 0.00 0.00 0.00 3.91
5092 5783 0.039035 GTGAAATGGGGCAGGGTACA 59.961 55.000 0.00 0.00 0.00 2.90
5277 5968 8.356533 AGAAAATGAAAGTATGCACAAAACAG 57.643 30.769 0.00 0.00 0.00 3.16
5278 5969 9.979578 ATAGAAAATGAAAGTATGCACAAAACA 57.020 25.926 0.00 0.00 0.00 2.83
5309 6000 1.209127 GAACATCCACGCCCAAACG 59.791 57.895 0.00 0.00 39.50 3.60
5340 6034 9.421399 AGGATAACTAGATAAAAACAATTGGGG 57.579 33.333 10.83 0.00 0.00 4.96
5354 6048 7.713073 GCTAAAGCAAGTCAAGGATAACTAGAT 59.287 37.037 0.00 0.00 41.59 1.98
5616 6315 2.568956 TGCACCTTAGACAATGCTCTCT 59.431 45.455 0.00 0.00 38.90 3.10
5643 6342 8.237811 TCTGATGACAGTATAGCATGTTTAGA 57.762 34.615 0.00 0.00 43.81 2.10
5814 6514 5.067674 GCTGCATATTTTCCAGACCATGTAA 59.932 40.000 0.00 0.00 0.00 2.41
5865 6565 3.924686 GGAGCTGAACAATTGCAATGAAG 59.075 43.478 13.82 8.86 0.00 3.02
5898 6598 2.767536 CCGCTGAGGTTATGTGGTG 58.232 57.895 0.00 0.00 34.51 4.17
5909 6609 0.597568 TGGAAAATTGCACCGCTGAG 59.402 50.000 0.00 0.00 0.00 3.35
5916 6616 2.863137 TCTTTTGCGTGGAAAATTGCAC 59.137 40.909 7.63 7.63 44.76 4.57
5983 6683 7.288852 TGGAAAGGGAAGTCAATTCACAATAAA 59.711 33.333 0.00 0.00 44.43 1.40
6077 6777 2.508526 AGGACATGCTTGGAAGTTGTC 58.491 47.619 4.44 12.51 38.96 3.18
6098 6798 3.709587 ACCTACTAAGCAAGAGTAGCCA 58.290 45.455 12.04 0.00 43.40 4.75
6111 6811 8.890410 ACAGTACTTGGAAGAATACCTACTAA 57.110 34.615 0.00 0.00 0.00 2.24
6112 6812 8.890410 AACAGTACTTGGAAGAATACCTACTA 57.110 34.615 0.00 0.00 0.00 1.82
6113 6813 7.453752 TGAACAGTACTTGGAAGAATACCTACT 59.546 37.037 0.00 0.00 0.00 2.57
6114 6814 7.544915 GTGAACAGTACTTGGAAGAATACCTAC 59.455 40.741 0.00 0.00 0.00 3.18
6115 6815 7.453752 AGTGAACAGTACTTGGAAGAATACCTA 59.546 37.037 0.00 0.00 0.00 3.08
6116 6816 6.270231 AGTGAACAGTACTTGGAAGAATACCT 59.730 38.462 0.00 0.00 0.00 3.08
6117 6817 6.465084 AGTGAACAGTACTTGGAAGAATACC 58.535 40.000 0.00 0.00 0.00 2.73
6118 6818 8.923683 GTTAGTGAACAGTACTTGGAAGAATAC 58.076 37.037 0.00 0.00 35.48 1.89
6120 6820 6.935208 GGTTAGTGAACAGTACTTGGAAGAAT 59.065 38.462 0.00 0.00 37.29 2.40
6121 6821 6.126997 TGGTTAGTGAACAGTACTTGGAAGAA 60.127 38.462 0.00 0.00 37.29 2.52
6122 6822 5.364446 TGGTTAGTGAACAGTACTTGGAAGA 59.636 40.000 0.00 0.00 37.29 2.87
6128 6996 5.278660 CGGTAGTGGTTAGTGAACAGTACTT 60.279 44.000 15.37 0.00 37.29 2.24
6169 7037 1.024271 TGCTTGTTGTCAGTTCAGGC 58.976 50.000 0.00 0.00 35.33 4.85
6192 7065 0.179225 GCATGAACAGCGTGTTACCG 60.179 55.000 0.00 0.00 41.28 4.02
6214 7087 5.183228 GGGACGTATTCAAGAATCTGGAAA 58.817 41.667 3.92 0.00 32.50 3.13
6247 7120 2.755876 AGGCCAGCGATCGACTGA 60.756 61.111 29.03 0.00 37.32 3.41
6259 7132 2.415608 GGACGACGAGATCAGGCCA 61.416 63.158 5.01 0.00 31.45 5.36
6280 7153 1.095600 CATCTCGGAACTCTCGGTCA 58.904 55.000 0.00 0.00 0.00 4.02
6338 7211 3.155167 GACCGCCCCTTCCGAGAT 61.155 66.667 0.00 0.00 0.00 2.75
6536 7412 6.864360 AAGACTGTCGTATCATACTCCTAC 57.136 41.667 1.52 0.00 0.00 3.18
6558 7434 8.038944 CGGGCCTATATAAACTTATCTAGCAAA 58.961 37.037 0.84 0.00 0.00 3.68
6559 7435 7.364408 CCGGGCCTATATAAACTTATCTAGCAA 60.364 40.741 0.84 0.00 0.00 3.91
6579 7455 4.643387 ACACTTGTCAGCCGGGCC 62.643 66.667 17.02 0.00 0.00 5.80
6580 7456 1.734388 AAAACACTTGTCAGCCGGGC 61.734 55.000 12.11 12.11 0.00 6.13
6581 7457 0.744281 AAAAACACTTGTCAGCCGGG 59.256 50.000 2.18 0.00 0.00 5.73
6582 7458 1.838913 CAAAAACACTTGTCAGCCGG 58.161 50.000 0.00 0.00 0.00 6.13
6583 7459 1.199624 GCAAAAACACTTGTCAGCCG 58.800 50.000 0.00 0.00 0.00 5.52
6584 7460 2.584492 AGCAAAAACACTTGTCAGCC 57.416 45.000 0.00 0.00 0.00 4.85
6597 7476 3.343617 CATACGGGAGAAGGAAGCAAAA 58.656 45.455 0.00 0.00 0.00 2.44
6598 7477 2.939640 GCATACGGGAGAAGGAAGCAAA 60.940 50.000 0.00 0.00 0.00 3.68
6726 7605 8.200024 TCCATCTAAAACAATGGGAAATTTGA 57.800 30.769 0.00 0.00 42.31 2.69
6804 7695 3.311110 ACACGCATCCGTCCACCT 61.311 61.111 0.00 0.00 46.39 4.00
6823 7714 4.681978 GTTCGGCTCGGGCACACT 62.682 66.667 10.74 0.00 40.87 3.55
7367 8275 2.650322 GGACTGGAGACGAGAAGAGAT 58.350 52.381 0.00 0.00 0.00 2.75
7368 8276 1.340211 GGGACTGGAGACGAGAAGAGA 60.340 57.143 0.00 0.00 0.00 3.10
7370 8278 0.323542 GGGGACTGGAGACGAGAAGA 60.324 60.000 0.00 0.00 0.00 2.87
7413 8337 5.303165 TGCATCTGATCTCGAATTTAGCAT 58.697 37.500 0.00 0.00 0.00 3.79
7418 8342 5.471456 GGGTATTGCATCTGATCTCGAATTT 59.529 40.000 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.