Multiple sequence alignment - TraesCS7B01G309300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G309300 chr7B 100.000 4540 0 0 1 4540 553622812 553627351 0.000000e+00 8384.0
1 TraesCS7B01G309300 chr7B 88.028 142 15 1 397 536 494497744 494497603 2.810000e-37 167.0
2 TraesCS7B01G309300 chr7D 92.262 2029 89 19 1769 3755 520400566 520402568 0.000000e+00 2815.0
3 TraesCS7B01G309300 chr7D 87.115 877 64 29 629 1461 520399389 520400260 0.000000e+00 948.0
4 TraesCS7B01G309300 chr7D 97.931 145 3 0 1516 1660 520400272 520400416 7.540000e-63 252.0
5 TraesCS7B01G309300 chr7D 84.358 179 28 0 388 566 10956861 10956683 4.670000e-40 176.0
6 TraesCS7B01G309300 chr7D 100.000 44 0 0 4497 4540 520403556 520403599 1.050000e-11 82.4
7 TraesCS7B01G309300 chr7D 95.833 48 2 0 4292 4339 622372333 622372286 1.350000e-10 78.7
8 TraesCS7B01G309300 chr7A 85.406 2316 180 54 1769 4062 596715491 596717670 0.000000e+00 2259.0
9 TraesCS7B01G309300 chr7A 93.289 447 13 7 991 1422 596714694 596715138 1.060000e-180 643.0
10 TraesCS7B01G309300 chr7A 97.333 150 4 0 1516 1665 596715208 596715357 5.830000e-64 255.0
11 TraesCS7B01G309300 chr7A 100.000 44 0 0 4497 4540 596718029 596718072 1.050000e-11 82.4
12 TraesCS7B01G309300 chr7A 91.667 48 4 0 4445 4492 596717954 596718001 2.930000e-07 67.6
13 TraesCS7B01G309300 chr4A 83.566 572 54 14 22 566 570227436 570227994 2.440000e-137 499.0
14 TraesCS7B01G309300 chr6B 87.321 418 42 7 123 534 717948899 717949311 6.880000e-128 468.0
15 TraesCS7B01G309300 chr6B 84.892 417 44 4 118 534 426752442 426752839 1.970000e-108 403.0
16 TraesCS7B01G309300 chr6B 86.755 151 18 1 388 536 693822349 693822499 2.810000e-37 167.0
17 TraesCS7B01G309300 chr5B 85.412 473 44 8 113 566 616382650 616382184 6.880000e-128 468.0
18 TraesCS7B01G309300 chr5B 93.750 48 1 1 4292 4339 384587549 384587594 2.270000e-08 71.3
19 TraesCS7B01G309300 chr2B 87.081 418 44 6 122 534 656939269 656939681 8.900000e-127 464.0
20 TraesCS7B01G309300 chr2B 87.050 417 44 6 123 534 208704973 208704562 3.200000e-126 462.0
21 TraesCS7B01G309300 chr2B 93.750 48 3 0 4292 4339 351222082 351222035 6.300000e-09 73.1
22 TraesCS7B01G309300 chr6A 84.783 414 44 5 121 534 385814064 385813670 9.150000e-107 398.0
23 TraesCS7B01G309300 chr6A 84.300 414 45 10 121 534 385733519 385733126 1.980000e-103 387.0
24 TraesCS7B01G309300 chr3D 86.592 179 24 0 388 566 1591215 1591393 9.960000e-47 198.0
25 TraesCS7B01G309300 chr5D 86.517 89 10 2 235 323 483989352 483989438 3.740000e-16 97.1
26 TraesCS7B01G309300 chr5A 97.917 48 1 0 4292 4339 137279721 137279674 2.910000e-12 84.2
27 TraesCS7B01G309300 chr2D 97.917 48 1 0 4292 4339 73403037 73402990 2.910000e-12 84.2
28 TraesCS7B01G309300 chr2D 91.667 48 4 0 4292 4339 367502012 367502059 2.930000e-07 67.6
29 TraesCS7B01G309300 chr1D 95.833 48 2 0 4292 4339 289532261 289532214 1.350000e-10 78.7
30 TraesCS7B01G309300 chr1D 95.833 48 2 0 4292 4339 289597477 289597430 1.350000e-10 78.7
31 TraesCS7B01G309300 chr2A 93.750 48 3 0 4292 4339 624457634 624457587 6.300000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G309300 chr7B 553622812 553627351 4539 False 8384.00 8384 100.000 1 4540 1 chr7B.!!$F1 4539
1 TraesCS7B01G309300 chr7D 520399389 520403599 4210 False 1024.35 2815 94.327 629 4540 4 chr7D.!!$F1 3911
2 TraesCS7B01G309300 chr7A 596714694 596718072 3378 False 661.40 2259 93.539 991 4540 5 chr7A.!!$F1 3549
3 TraesCS7B01G309300 chr4A 570227436 570227994 558 False 499.00 499 83.566 22 566 1 chr4A.!!$F1 544

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
993 1058 0.107410 GCGAGAGGGAGTCAGAGAGA 60.107 60.0 0.0 0.0 0.0 3.10 F
1477 1592 0.037590 TGGGGCGAGCAACAATAACT 59.962 50.0 0.0 0.0 0.0 2.24 F
1762 1937 0.104487 TGCTGAACCGAACCGTAACA 59.896 50.0 0.0 0.0 0.0 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2017 2192 0.108615 CTAAGAGGCACAGGACACCG 60.109 60.0 0.0 0.0 0.00 4.94 R
3274 3466 0.036164 ACATCGTTAGCCAGTGCCAA 59.964 50.0 0.0 0.0 38.69 4.52 R
3718 3936 0.169009 GGCGACACAAGATGGCTTTC 59.831 55.0 0.0 0.0 31.94 2.62 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.090532 ATTCCTCCGCACCCTCCC 61.091 66.667 0.00 0.00 0.00 4.30
53 54 3.391382 CCCCACCGTGACCTCCTC 61.391 72.222 0.00 0.00 0.00 3.71
55 56 2.603473 CCACCGTGACCTCCTCCA 60.603 66.667 0.00 0.00 0.00 3.86
58 59 0.972983 CACCGTGACCTCCTCCATCT 60.973 60.000 0.00 0.00 0.00 2.90
62 63 2.700897 CCGTGACCTCCTCCATCTATTT 59.299 50.000 0.00 0.00 0.00 1.40
68 69 6.209788 GTGACCTCCTCCATCTATTTAGTAGG 59.790 46.154 0.00 0.00 0.00 3.18
70 71 6.078664 ACCTCCTCCATCTATTTAGTAGGTG 58.921 44.000 0.00 0.00 40.58 4.00
71 72 5.046950 CCTCCTCCATCTATTTAGTAGGTGC 60.047 48.000 0.00 0.00 39.73 5.01
72 73 5.716979 TCCTCCATCTATTTAGTAGGTGCT 58.283 41.667 0.00 0.00 39.73 4.40
73 74 5.775701 TCCTCCATCTATTTAGTAGGTGCTC 59.224 44.000 0.00 0.00 39.73 4.26
74 75 5.046950 CCTCCATCTATTTAGTAGGTGCTCC 60.047 48.000 0.00 0.00 39.73 4.70
75 76 4.838986 TCCATCTATTTAGTAGGTGCTCCC 59.161 45.833 0.00 0.00 39.73 4.30
102 103 2.680439 TTCCTCCCACTTCCCCTATT 57.320 50.000 0.00 0.00 0.00 1.73
117 118 1.221781 CCTATTCCCCTCTCACCTCCT 59.778 57.143 0.00 0.00 0.00 3.69
119 120 0.719015 ATTCCCCTCTCACCTCCTGA 59.281 55.000 0.00 0.00 0.00 3.86
158 170 4.330074 GGTAGTGACCGAATTCATGTGAAG 59.670 45.833 6.22 0.00 35.03 3.02
176 188 2.795231 AGTGATGAACAGTGGATGGG 57.205 50.000 0.00 0.00 0.00 4.00
184 196 3.573538 TGAACAGTGGATGGGTTTTGATG 59.426 43.478 0.00 0.00 0.00 3.07
190 202 4.160252 AGTGGATGGGTTTTGATGTATTGC 59.840 41.667 0.00 0.00 0.00 3.56
199 211 8.412456 TGGGTTTTGATGTATTGCTACATATTG 58.588 33.333 0.00 0.00 46.28 1.90
246 258 4.263462 TGGAAAGTGGACTGCATATTGTCT 60.263 41.667 4.09 0.00 34.01 3.41
254 266 6.316140 GTGGACTGCATATTGTCTTATGTTGA 59.684 38.462 4.09 0.00 33.07 3.18
261 273 8.829612 TGCATATTGTCTTATGTTGATGTACAG 58.170 33.333 0.33 0.00 33.07 2.74
267 279 8.117813 TGTCTTATGTTGATGTACAGTGACTA 57.882 34.615 0.33 0.00 32.12 2.59
306 318 7.410800 ACTTGTTGCATTTTGATGTACATTG 57.589 32.000 10.30 4.96 0.00 2.82
310 322 6.590677 TGTTGCATTTTGATGTACATTGGATG 59.409 34.615 10.30 12.45 0.00 3.51
315 327 6.662865 TTTTGATGTACATTGGATGGTTGT 57.337 33.333 10.30 0.00 33.60 3.32
321 333 5.073428 TGTACATTGGATGGTTGTTTGCTA 58.927 37.500 0.00 0.00 33.60 3.49
324 336 4.022068 ACATTGGATGGTTGTTTGCTACAG 60.022 41.667 0.00 0.00 34.44 2.74
327 339 4.406456 TGGATGGTTGTTTGCTACAGATT 58.594 39.130 0.00 0.00 38.19 2.40
329 341 4.218417 GGATGGTTGTTTGCTACAGATTGT 59.782 41.667 0.00 0.00 38.19 2.71
330 342 4.829064 TGGTTGTTTGCTACAGATTGTC 57.171 40.909 0.00 0.00 38.19 3.18
331 343 4.203226 TGGTTGTTTGCTACAGATTGTCA 58.797 39.130 0.00 0.00 38.19 3.58
337 349 6.898041 TGTTTGCTACAGATTGTCATGTAAC 58.102 36.000 0.00 0.00 31.81 2.50
339 351 7.875554 TGTTTGCTACAGATTGTCATGTAACTA 59.124 33.333 0.00 0.00 31.81 2.24
415 427 5.280164 TGCATTACGGTCAATTTGCATATG 58.720 37.500 0.00 0.00 35.36 1.78
422 434 7.275888 ACGGTCAATTTGCATATGAACATAT 57.724 32.000 6.97 1.97 34.50 1.78
436 448 3.947196 TGAACATATTCACTCATGCCCAC 59.053 43.478 0.00 0.00 40.01 4.61
439 451 1.199615 TATTCACTCATGCCCACGGA 58.800 50.000 0.00 0.00 0.00 4.69
447 459 1.016627 CATGCCCACGGACATTACAG 58.983 55.000 0.00 0.00 0.00 2.74
457 469 4.450757 CACGGACATTACAGACAATTCACA 59.549 41.667 0.00 0.00 0.00 3.58
460 472 5.616866 CGGACATTACAGACAATTCACAACC 60.617 44.000 0.00 0.00 0.00 3.77
473 485 7.781056 ACAATTCACAACCAAATCTACAGTTT 58.219 30.769 0.00 0.00 0.00 2.66
477 489 5.007234 TCACAACCAAATCTACAGTTTCACG 59.993 40.000 0.00 0.00 0.00 4.35
480 492 4.457466 ACCAAATCTACAGTTTCACGGTT 58.543 39.130 0.00 0.00 0.00 4.44
516 542 0.324285 CTCCAGCTTCTCCACAGCTT 59.676 55.000 0.00 0.00 45.82 3.74
522 548 3.058363 CAGCTTCTCCACAGCTTCTTTTC 60.058 47.826 0.00 0.00 45.82 2.29
536 562 4.033243 GCTTCTTTTCCACAACAGCTTTTG 59.967 41.667 11.05 11.05 0.00 2.44
545 571 6.061441 TCCACAACAGCTTTTGAAGAATCTA 58.939 36.000 19.17 0.00 0.00 1.98
555 581 6.072783 GCTTTTGAAGAATCTACAGCTCAACT 60.073 38.462 0.00 0.00 0.00 3.16
566 592 1.195448 CAGCTCAACTAAACACAGCCG 59.805 52.381 0.00 0.00 0.00 5.52
567 593 1.202651 AGCTCAACTAAACACAGCCGT 60.203 47.619 0.00 0.00 0.00 5.68
576 602 2.507102 CACAGCCGTGTAGCTCCG 60.507 66.667 0.00 0.00 42.61 4.63
577 603 2.989824 ACAGCCGTGTAGCTCCGT 60.990 61.111 0.00 0.00 42.61 4.69
578 604 2.261671 CAGCCGTGTAGCTCCGTT 59.738 61.111 0.00 0.00 42.61 4.44
579 605 2.094659 CAGCCGTGTAGCTCCGTTG 61.095 63.158 0.00 0.00 42.61 4.10
580 606 2.260434 GCCGTGTAGCTCCGTTGA 59.740 61.111 0.00 0.00 0.00 3.18
581 607 1.805945 GCCGTGTAGCTCCGTTGAG 60.806 63.158 0.00 0.00 41.84 3.02
582 608 1.153823 CCGTGTAGCTCCGTTGAGG 60.154 63.158 0.00 0.00 39.14 3.86
584 610 0.456312 CGTGTAGCTCCGTTGAGGTC 60.456 60.000 0.00 0.00 46.08 3.85
585 611 0.889306 GTGTAGCTCCGTTGAGGTCT 59.111 55.000 0.00 0.00 46.08 3.85
586 612 1.135344 GTGTAGCTCCGTTGAGGTCTC 60.135 57.143 0.00 0.00 46.08 3.36
587 613 1.174783 GTAGCTCCGTTGAGGTCTCA 58.825 55.000 0.00 0.00 46.08 3.27
588 614 1.135344 GTAGCTCCGTTGAGGTCTCAC 60.135 57.143 0.00 0.00 46.08 3.51
589 615 0.540830 AGCTCCGTTGAGGTCTCACT 60.541 55.000 0.00 0.00 46.08 3.41
590 616 0.109039 GCTCCGTTGAGGTCTCACTC 60.109 60.000 0.00 0.00 39.66 3.51
591 617 1.540267 CTCCGTTGAGGTCTCACTCT 58.460 55.000 0.00 0.00 39.66 3.24
592 618 1.470890 CTCCGTTGAGGTCTCACTCTC 59.529 57.143 0.00 0.00 39.66 3.20
593 619 1.074084 TCCGTTGAGGTCTCACTCTCT 59.926 52.381 0.00 0.00 39.66 3.10
594 620 1.889829 CCGTTGAGGTCTCACTCTCTT 59.110 52.381 0.00 0.00 39.66 2.85
595 621 2.297597 CCGTTGAGGTCTCACTCTCTTT 59.702 50.000 0.00 0.00 39.66 2.52
596 622 3.243907 CCGTTGAGGTCTCACTCTCTTTT 60.244 47.826 0.00 0.00 39.66 2.27
597 623 3.984633 CGTTGAGGTCTCACTCTCTTTTC 59.015 47.826 0.00 0.00 39.66 2.29
598 624 4.499865 CGTTGAGGTCTCACTCTCTTTTCA 60.500 45.833 0.00 0.00 39.66 2.69
599 625 5.360591 GTTGAGGTCTCACTCTCTTTTCAA 58.639 41.667 0.00 0.00 39.66 2.69
600 626 5.207110 TGAGGTCTCACTCTCTTTTCAAG 57.793 43.478 0.00 0.00 38.32 3.02
601 627 4.895889 TGAGGTCTCACTCTCTTTTCAAGA 59.104 41.667 0.00 0.00 38.32 3.02
602 628 5.363868 TGAGGTCTCACTCTCTTTTCAAGAA 59.636 40.000 0.00 0.00 38.32 2.52
603 629 6.042552 TGAGGTCTCACTCTCTTTTCAAGAAT 59.957 38.462 0.00 0.00 38.32 2.40
604 630 6.463360 AGGTCTCACTCTCTTTTCAAGAATC 58.537 40.000 0.00 0.00 37.02 2.52
605 631 6.042552 AGGTCTCACTCTCTTTTCAAGAATCA 59.957 38.462 0.00 0.00 37.02 2.57
606 632 6.368516 GGTCTCACTCTCTTTTCAAGAATCAG 59.631 42.308 0.00 0.00 37.02 2.90
607 633 5.931146 TCTCACTCTCTTTTCAAGAATCAGC 59.069 40.000 0.00 0.00 37.02 4.26
608 634 5.614308 TCACTCTCTTTTCAAGAATCAGCA 58.386 37.500 0.00 0.00 37.02 4.41
609 635 5.699915 TCACTCTCTTTTCAAGAATCAGCAG 59.300 40.000 0.00 0.00 37.02 4.24
610 636 4.455190 ACTCTCTTTTCAAGAATCAGCAGC 59.545 41.667 0.00 0.00 37.02 5.25
611 637 4.649692 TCTCTTTTCAAGAATCAGCAGCT 58.350 39.130 0.00 0.00 37.02 4.24
612 638 4.694509 TCTCTTTTCAAGAATCAGCAGCTC 59.305 41.667 0.00 0.00 37.02 4.09
613 639 4.392047 TCTTTTCAAGAATCAGCAGCTCA 58.608 39.130 0.00 0.00 33.83 4.26
614 640 4.823442 TCTTTTCAAGAATCAGCAGCTCAA 59.177 37.500 0.00 0.00 33.83 3.02
615 641 4.494350 TTTCAAGAATCAGCAGCTCAAC 57.506 40.909 0.00 0.00 0.00 3.18
616 642 2.430465 TCAAGAATCAGCAGCTCAACC 58.570 47.619 0.00 0.00 0.00 3.77
617 643 2.156917 CAAGAATCAGCAGCTCAACCA 58.843 47.619 0.00 0.00 0.00 3.67
618 644 2.555325 CAAGAATCAGCAGCTCAACCAA 59.445 45.455 0.00 0.00 0.00 3.67
619 645 2.867624 AGAATCAGCAGCTCAACCAAA 58.132 42.857 0.00 0.00 0.00 3.28
620 646 2.555757 AGAATCAGCAGCTCAACCAAAC 59.444 45.455 0.00 0.00 0.00 2.93
621 647 1.985473 ATCAGCAGCTCAACCAAACA 58.015 45.000 0.00 0.00 0.00 2.83
622 648 1.024271 TCAGCAGCTCAACCAAACAC 58.976 50.000 0.00 0.00 0.00 3.32
623 649 0.317269 CAGCAGCTCAACCAAACACG 60.317 55.000 0.00 0.00 0.00 4.49
624 650 1.008538 GCAGCTCAACCAAACACGG 60.009 57.895 0.00 0.00 0.00 4.94
625 651 1.008538 CAGCTCAACCAAACACGGC 60.009 57.895 0.00 0.00 0.00 5.68
626 652 2.051345 GCTCAACCAAACACGGCG 60.051 61.111 4.80 4.80 0.00 6.46
627 653 2.830285 GCTCAACCAAACACGGCGT 61.830 57.895 6.77 6.77 0.00 5.68
649 675 0.540830 AGCTCCGTTGAGGTCTCACT 60.541 55.000 0.00 0.00 46.08 3.41
655 681 1.202582 CGTTGAGGTCTCACTCCGAAT 59.797 52.381 0.00 0.00 39.66 3.34
658 684 3.367646 TGAGGTCTCACTCCGAATAGT 57.632 47.619 0.00 0.00 36.66 2.12
700 726 1.265095 GTGCGTGGATGGAATATGCTG 59.735 52.381 0.00 0.00 0.00 4.41
726 753 2.552315 GCCCAAAGATTTCGTTCAGTCA 59.448 45.455 0.00 0.00 0.00 3.41
735 762 2.940994 TCGTTCAGTCATTCCCCAAA 57.059 45.000 0.00 0.00 0.00 3.28
736 763 3.216187 TCGTTCAGTCATTCCCCAAAA 57.784 42.857 0.00 0.00 0.00 2.44
737 764 2.882137 TCGTTCAGTCATTCCCCAAAAC 59.118 45.455 0.00 0.00 0.00 2.43
738 765 2.621055 CGTTCAGTCATTCCCCAAAACA 59.379 45.455 0.00 0.00 0.00 2.83
739 766 3.067461 CGTTCAGTCATTCCCCAAAACAA 59.933 43.478 0.00 0.00 0.00 2.83
740 767 4.440802 CGTTCAGTCATTCCCCAAAACAAA 60.441 41.667 0.00 0.00 0.00 2.83
741 768 5.610398 GTTCAGTCATTCCCCAAAACAAAT 58.390 37.500 0.00 0.00 0.00 2.32
742 769 5.212532 TCAGTCATTCCCCAAAACAAATG 57.787 39.130 0.00 0.00 0.00 2.32
743 770 4.040217 TCAGTCATTCCCCAAAACAAATGG 59.960 41.667 0.00 0.00 37.71 3.16
744 771 4.040217 CAGTCATTCCCCAAAACAAATGGA 59.960 41.667 0.00 0.00 40.56 3.41
745 772 4.657969 AGTCATTCCCCAAAACAAATGGAA 59.342 37.500 0.00 0.00 40.56 3.53
746 773 4.754618 GTCATTCCCCAAAACAAATGGAAC 59.245 41.667 0.00 0.00 40.56 3.62
747 774 4.657969 TCATTCCCCAAAACAAATGGAACT 59.342 37.500 0.00 0.00 40.56 3.01
748 775 5.131809 TCATTCCCCAAAACAAATGGAACTT 59.868 36.000 0.00 0.00 40.56 2.66
749 776 4.681074 TCCCCAAAACAAATGGAACTTC 57.319 40.909 0.00 0.00 40.56 3.01
750 777 4.294347 TCCCCAAAACAAATGGAACTTCT 58.706 39.130 0.00 0.00 40.56 2.85
751 778 4.719273 TCCCCAAAACAAATGGAACTTCTT 59.281 37.500 0.00 0.00 40.56 2.52
752 779 5.056480 CCCCAAAACAAATGGAACTTCTTC 58.944 41.667 0.00 0.00 40.56 2.87
753 780 5.163311 CCCCAAAACAAATGGAACTTCTTCT 60.163 40.000 0.00 0.00 40.56 2.85
754 781 6.041523 CCCCAAAACAAATGGAACTTCTTCTA 59.958 38.462 0.00 0.00 40.56 2.10
755 782 7.418483 CCCCAAAACAAATGGAACTTCTTCTAA 60.418 37.037 0.00 0.00 40.56 2.10
756 783 7.984617 CCCAAAACAAATGGAACTTCTTCTAAA 59.015 33.333 0.00 0.00 40.56 1.85
757 784 9.377312 CCAAAACAAATGGAACTTCTTCTAAAA 57.623 29.630 0.00 0.00 40.56 1.52
809 837 2.507102 CAGCGACCGTACTGCCTG 60.507 66.667 0.00 0.00 0.00 4.85
810 838 4.436998 AGCGACCGTACTGCCTGC 62.437 66.667 0.00 0.00 0.00 4.85
813 841 2.815647 GACCGTACTGCCTGCTGC 60.816 66.667 0.00 0.00 41.77 5.25
861 923 2.203070 CCACCTGCCGCATACCTC 60.203 66.667 0.00 0.00 0.00 3.85
908 970 1.453155 GCAGGCGAAAAATCTGGAGA 58.547 50.000 0.00 0.00 0.00 3.71
911 973 3.488216 GCAGGCGAAAAATCTGGAGATTC 60.488 47.826 2.36 0.00 43.41 2.52
926 988 1.950909 AGATTCGCTTCTCCTAGTCGG 59.049 52.381 0.00 0.00 0.00 4.79
927 989 1.948145 GATTCGCTTCTCCTAGTCGGA 59.052 52.381 0.00 0.00 40.30 4.55
961 1026 1.298014 AGCAAGGCTGGAGTAGTGC 59.702 57.895 0.00 0.00 37.57 4.40
991 1056 4.647825 GCGAGAGGGAGTCAGAGA 57.352 61.111 0.00 0.00 0.00 3.10
992 1057 2.404083 GCGAGAGGGAGTCAGAGAG 58.596 63.158 0.00 0.00 0.00 3.20
993 1058 0.107410 GCGAGAGGGAGTCAGAGAGA 60.107 60.000 0.00 0.00 0.00 3.10
994 1059 1.953559 CGAGAGGGAGTCAGAGAGAG 58.046 60.000 0.00 0.00 0.00 3.20
995 1060 1.484653 CGAGAGGGAGTCAGAGAGAGA 59.515 57.143 0.00 0.00 0.00 3.10
1167 1248 1.185618 TCCTCACCAAGTCCGTCCTG 61.186 60.000 0.00 0.00 0.00 3.86
1262 1343 1.598601 CTACTTCCGAGAGAGGTACGC 59.401 57.143 0.00 0.00 36.07 4.42
1263 1344 0.322277 ACTTCCGAGAGAGGTACGCA 60.322 55.000 0.00 0.00 31.97 5.24
1264 1345 0.099082 CTTCCGAGAGAGGTACGCAC 59.901 60.000 0.00 0.00 0.00 5.34
1409 1505 4.082523 TCCTTCGCGCTCCTTGGG 62.083 66.667 5.56 0.00 0.00 4.12
1422 1518 0.607217 CCTTGGGTTCACCGGGTAAC 60.607 60.000 6.32 9.65 44.64 2.50
1428 1524 1.264295 GTTCACCGGGTAACTCTCCT 58.736 55.000 6.32 0.00 0.00 3.69
1437 1552 2.379972 GGTAACTCTCCTCTGCTGCTA 58.620 52.381 0.00 0.00 0.00 3.49
1450 1565 2.745100 TGCTACTGCTGCTGCTGC 60.745 61.111 22.51 22.51 41.07 5.25
1461 1576 2.829003 CTGCTGCTGCCTGATGGG 60.829 66.667 13.47 0.00 38.71 4.00
1469 1584 4.802051 GCCTGATGGGGCGAGCAA 62.802 66.667 0.00 0.00 42.82 3.91
1470 1585 2.825836 CCTGATGGGGCGAGCAAC 60.826 66.667 0.00 0.00 0.00 4.17
1471 1586 2.046023 CTGATGGGGCGAGCAACA 60.046 61.111 0.00 0.00 0.00 3.33
1472 1587 1.675310 CTGATGGGGCGAGCAACAA 60.675 57.895 0.00 0.00 0.00 2.83
1473 1588 1.001020 TGATGGGGCGAGCAACAAT 60.001 52.632 0.00 0.00 0.00 2.71
1474 1589 0.254462 TGATGGGGCGAGCAACAATA 59.746 50.000 0.00 0.00 0.00 1.90
1475 1590 1.340502 TGATGGGGCGAGCAACAATAA 60.341 47.619 0.00 0.00 0.00 1.40
1476 1591 1.065551 GATGGGGCGAGCAACAATAAC 59.934 52.381 0.00 0.00 0.00 1.89
1477 1592 0.037590 TGGGGCGAGCAACAATAACT 59.962 50.000 0.00 0.00 0.00 2.24
1478 1593 0.733150 GGGGCGAGCAACAATAACTC 59.267 55.000 0.00 0.00 0.00 3.01
1479 1594 1.679032 GGGGCGAGCAACAATAACTCT 60.679 52.381 0.00 0.00 0.00 3.24
1480 1595 1.666189 GGGCGAGCAACAATAACTCTC 59.334 52.381 0.00 0.00 0.00 3.20
1481 1596 2.622436 GGCGAGCAACAATAACTCTCT 58.378 47.619 0.00 0.00 0.00 3.10
1482 1597 3.003480 GGCGAGCAACAATAACTCTCTT 58.997 45.455 0.00 0.00 0.00 2.85
1483 1598 3.062774 GGCGAGCAACAATAACTCTCTTC 59.937 47.826 0.00 0.00 0.00 2.87
1484 1599 3.679980 GCGAGCAACAATAACTCTCTTCA 59.320 43.478 0.00 0.00 0.00 3.02
1485 1600 4.201666 GCGAGCAACAATAACTCTCTTCAG 60.202 45.833 0.00 0.00 0.00 3.02
1486 1601 4.926238 CGAGCAACAATAACTCTCTTCAGT 59.074 41.667 0.00 0.00 0.00 3.41
1487 1602 5.061560 CGAGCAACAATAACTCTCTTCAGTC 59.938 44.000 0.00 0.00 0.00 3.51
1488 1603 6.107901 AGCAACAATAACTCTCTTCAGTCT 57.892 37.500 0.00 0.00 0.00 3.24
1489 1604 6.162777 AGCAACAATAACTCTCTTCAGTCTC 58.837 40.000 0.00 0.00 0.00 3.36
1490 1605 5.061560 GCAACAATAACTCTCTTCAGTCTCG 59.938 44.000 0.00 0.00 0.00 4.04
1491 1606 5.968528 ACAATAACTCTCTTCAGTCTCGT 57.031 39.130 0.00 0.00 0.00 4.18
1492 1607 5.704888 ACAATAACTCTCTTCAGTCTCGTG 58.295 41.667 0.00 0.00 0.00 4.35
1493 1608 2.715737 AACTCTCTTCAGTCTCGTGC 57.284 50.000 0.00 0.00 0.00 5.34
1494 1609 1.904287 ACTCTCTTCAGTCTCGTGCT 58.096 50.000 0.00 0.00 0.00 4.40
1495 1610 1.539388 ACTCTCTTCAGTCTCGTGCTG 59.461 52.381 3.51 3.51 35.43 4.41
1496 1611 1.539388 CTCTCTTCAGTCTCGTGCTGT 59.461 52.381 8.17 0.00 35.60 4.40
1497 1612 1.537638 TCTCTTCAGTCTCGTGCTGTC 59.462 52.381 8.17 0.00 35.60 3.51
1498 1613 1.539388 CTCTTCAGTCTCGTGCTGTCT 59.461 52.381 8.17 0.00 35.60 3.41
1499 1614 1.957177 TCTTCAGTCTCGTGCTGTCTT 59.043 47.619 8.17 0.00 35.60 3.01
1500 1615 2.030717 TCTTCAGTCTCGTGCTGTCTTC 60.031 50.000 8.17 0.00 35.60 2.87
1501 1616 0.598562 TCAGTCTCGTGCTGTCTTCC 59.401 55.000 8.17 0.00 35.60 3.46
1502 1617 0.315251 CAGTCTCGTGCTGTCTTCCA 59.685 55.000 0.00 0.00 0.00 3.53
1503 1618 1.067283 CAGTCTCGTGCTGTCTTCCAT 60.067 52.381 0.00 0.00 0.00 3.41
1504 1619 1.203523 AGTCTCGTGCTGTCTTCCATC 59.796 52.381 0.00 0.00 0.00 3.51
1505 1620 0.171231 TCTCGTGCTGTCTTCCATCG 59.829 55.000 0.00 0.00 0.00 3.84
1506 1621 0.171231 CTCGTGCTGTCTTCCATCGA 59.829 55.000 0.00 0.00 0.00 3.59
1507 1622 0.109272 TCGTGCTGTCTTCCATCGAC 60.109 55.000 0.00 0.00 0.00 4.20
1508 1623 0.109086 CGTGCTGTCTTCCATCGACT 60.109 55.000 0.00 0.00 32.70 4.18
1509 1624 1.132453 CGTGCTGTCTTCCATCGACTA 59.868 52.381 0.00 0.00 32.70 2.59
1510 1625 2.415491 CGTGCTGTCTTCCATCGACTAA 60.415 50.000 0.00 0.00 32.70 2.24
1511 1626 2.924290 GTGCTGTCTTCCATCGACTAAC 59.076 50.000 0.00 0.00 32.70 2.34
1512 1627 2.826128 TGCTGTCTTCCATCGACTAACT 59.174 45.455 0.00 0.00 32.70 2.24
1513 1628 3.119459 TGCTGTCTTCCATCGACTAACTC 60.119 47.826 0.00 0.00 32.70 3.01
1514 1629 3.119459 GCTGTCTTCCATCGACTAACTCA 60.119 47.826 0.00 0.00 32.70 3.41
1525 1640 4.998788 TCGACTAACTCATCACATTCTGG 58.001 43.478 0.00 0.00 0.00 3.86
1545 1660 2.125512 GCGTGCAGGATCTTCGGT 60.126 61.111 11.29 0.00 0.00 4.69
1638 1753 0.247736 CCGTCTTCACCTTCCTCCTG 59.752 60.000 0.00 0.00 0.00 3.86
1661 1787 1.369091 GCAATCGTCGGGTGAGCAAT 61.369 55.000 0.00 0.00 0.00 3.56
1665 1791 0.669318 TCGTCGGGTGAGCAATCAAC 60.669 55.000 0.00 0.00 0.00 3.18
1667 1793 0.321653 GTCGGGTGAGCAATCAACCT 60.322 55.000 10.42 0.00 45.03 3.50
1668 1794 0.321564 TCGGGTGAGCAATCAACCTG 60.322 55.000 10.42 1.04 45.03 4.00
1669 1795 0.321564 CGGGTGAGCAATCAACCTGA 60.322 55.000 10.42 0.00 45.03 3.86
1690 1854 1.676615 CCCTTGGATGCAAATGCCAAC 60.677 52.381 0.00 0.00 41.18 3.77
1703 1867 0.881159 TGCCAACCTGAACCGTAACG 60.881 55.000 0.00 0.00 0.00 3.18
1707 1871 2.476821 CAACCTGAACCGTAACGAACT 58.523 47.619 0.00 0.00 0.00 3.01
1708 1872 3.552684 CCAACCTGAACCGTAACGAACTA 60.553 47.826 0.00 0.00 0.00 2.24
1718 1882 3.913763 CCGTAACGAACTACGAAATGTCA 59.086 43.478 14.80 0.00 46.00 3.58
1721 1896 5.944135 CGTAACGAACTACGAAATGTCAATG 59.056 40.000 9.73 0.00 46.00 2.82
1724 1899 4.391830 ACGAACTACGAAATGTCAATGCAT 59.608 37.500 0.00 0.00 45.77 3.96
1738 1913 5.106038 TGTCAATGCATTTCTGGATTCTGAC 60.106 40.000 9.83 11.14 40.98 3.51
1752 1927 0.247460 TCTGACCAGATGCTGAACCG 59.753 55.000 0.00 0.00 32.44 4.44
1755 1930 1.079503 GACCAGATGCTGAACCGAAC 58.920 55.000 0.00 0.00 32.44 3.95
1756 1931 0.321653 ACCAGATGCTGAACCGAACC 60.322 55.000 0.00 0.00 32.44 3.62
1759 1934 0.892755 AGATGCTGAACCGAACCGTA 59.107 50.000 0.00 0.00 0.00 4.02
1760 1935 1.274167 AGATGCTGAACCGAACCGTAA 59.726 47.619 0.00 0.00 0.00 3.18
1761 1936 1.392510 GATGCTGAACCGAACCGTAAC 59.607 52.381 0.00 0.00 0.00 2.50
1762 1937 0.104487 TGCTGAACCGAACCGTAACA 59.896 50.000 0.00 0.00 0.00 2.41
1763 1938 0.788391 GCTGAACCGAACCGTAACAG 59.212 55.000 0.00 0.00 0.00 3.16
1764 1939 1.603678 GCTGAACCGAACCGTAACAGA 60.604 52.381 0.00 0.00 0.00 3.41
1765 1940 2.746269 CTGAACCGAACCGTAACAGAA 58.254 47.619 0.00 0.00 0.00 3.02
1766 1941 3.323243 CTGAACCGAACCGTAACAGAAT 58.677 45.455 0.00 0.00 0.00 2.40
1767 1942 3.731089 TGAACCGAACCGTAACAGAATT 58.269 40.909 0.00 0.00 0.00 2.17
1768 1943 4.880759 TGAACCGAACCGTAACAGAATTA 58.119 39.130 0.00 0.00 0.00 1.40
1769 1944 4.685628 TGAACCGAACCGTAACAGAATTAC 59.314 41.667 0.00 0.00 0.00 1.89
1770 1945 3.588955 ACCGAACCGTAACAGAATTACC 58.411 45.455 0.00 0.00 0.00 2.85
1771 1946 3.006752 ACCGAACCGTAACAGAATTACCA 59.993 43.478 0.00 0.00 0.00 3.25
1772 1947 3.995705 CCGAACCGTAACAGAATTACCAA 59.004 43.478 0.00 0.00 0.00 3.67
1773 1948 4.451774 CCGAACCGTAACAGAATTACCAAA 59.548 41.667 0.00 0.00 0.00 3.28
1774 1949 5.049543 CCGAACCGTAACAGAATTACCAAAA 60.050 40.000 0.00 0.00 0.00 2.44
1775 1950 6.348704 CCGAACCGTAACAGAATTACCAAAAT 60.349 38.462 0.00 0.00 0.00 1.82
1776 1951 6.521821 CGAACCGTAACAGAATTACCAAAATG 59.478 38.462 0.00 0.00 0.00 2.32
1777 1952 7.513371 AACCGTAACAGAATTACCAAAATGA 57.487 32.000 0.00 0.00 0.00 2.57
1778 1953 7.696992 ACCGTAACAGAATTACCAAAATGAT 57.303 32.000 0.00 0.00 0.00 2.45
1779 1954 7.758495 ACCGTAACAGAATTACCAAAATGATC 58.242 34.615 0.00 0.00 0.00 2.92
1780 1955 7.610305 ACCGTAACAGAATTACCAAAATGATCT 59.390 33.333 0.00 0.00 0.00 2.75
1781 1956 8.458843 CCGTAACAGAATTACCAAAATGATCTT 58.541 33.333 0.00 0.00 0.00 2.40
1782 1957 9.277565 CGTAACAGAATTACCAAAATGATCTTG 57.722 33.333 0.00 0.00 0.00 3.02
1789 1964 4.525912 ACCAAAATGATCTTGTTCCAGC 57.474 40.909 0.00 0.00 0.00 4.85
1911 2086 2.519541 CCTGATCGGCCTCGGAGA 60.520 66.667 6.58 0.00 36.95 3.71
1912 2087 1.905843 CCTGATCGGCCTCGGAGAT 60.906 63.158 6.58 0.00 33.89 2.75
1925 2100 2.117156 GGAGATGCCAATGCGCTGT 61.117 57.895 9.73 0.00 41.78 4.40
1927 2102 1.077930 AGATGCCAATGCGCTGTCT 60.078 52.632 9.73 0.00 41.78 3.41
1998 2173 0.817634 CCAACCACGCTCCAGTTCAA 60.818 55.000 0.00 0.00 0.00 2.69
2017 2192 3.895041 TCAATTTTGGAACCTGGAACCTC 59.105 43.478 0.00 0.00 0.00 3.85
2056 2231 0.322816 GCAACTGCTTCCTCATGGGA 60.323 55.000 0.00 0.00 43.41 4.37
2077 2252 5.053145 GGAGCTTATCTTGTCATACAGGTG 58.947 45.833 0.00 0.00 0.00 4.00
2097 2272 3.989817 GTGATGCAGATTGGGTTGTTTTC 59.010 43.478 0.00 0.00 0.00 2.29
2167 2348 2.092968 TGTCCTTTTCTGCTGTGACTGT 60.093 45.455 0.00 0.00 0.00 3.55
2242 2423 6.998074 CCTATTCTTACTCATTTGCCACCATA 59.002 38.462 0.00 0.00 0.00 2.74
2293 2474 3.731728 GGGCTCCATGAGTGGGCA 61.732 66.667 0.00 0.00 46.06 5.36
2366 2547 2.568623 AATCTATGGCCGCCCTTTAG 57.431 50.000 7.03 5.92 0.00 1.85
2374 2555 1.409101 GGCCGCCCTTTAGGATTACAA 60.409 52.381 0.00 0.00 38.24 2.41
2397 2578 7.495934 ACAATAGAACTTGTATGACCATGCTAC 59.504 37.037 0.22 0.00 37.58 3.58
2446 2627 3.540314 AACCACATTTCTTGCTTGCAA 57.460 38.095 7.83 7.83 0.00 4.08
2501 2682 1.406539 GCAATCATGACTTGGGCGAAT 59.593 47.619 0.00 0.00 0.00 3.34
2510 2691 5.560966 TGACTTGGGCGAATAAAATTCTC 57.439 39.130 0.00 0.00 0.00 2.87
2516 2697 3.203716 GGCGAATAAAATTCTCGGACCT 58.796 45.455 0.00 0.00 33.23 3.85
2664 2854 5.868043 TGAACATTGTCACATCATGAGTC 57.132 39.130 0.09 0.00 38.28 3.36
2679 2869 1.955778 TGAGTCGTCAAGTTTCGGGTA 59.044 47.619 0.00 0.00 0.00 3.69
2692 2882 4.763279 AGTTTCGGGTAATTCGAATTGGTT 59.237 37.500 29.20 10.03 44.47 3.67
2749 2939 5.574443 GCTCTTTCAAGCAAAATGGTATGAC 59.426 40.000 0.00 0.00 42.05 3.06
2894 3084 5.556915 CAGAACTAAATACCCACCTTGTGA 58.443 41.667 0.00 0.00 35.23 3.58
2900 3090 5.578157 AAATACCCACCTTGTGAACTACT 57.422 39.130 0.00 0.00 35.23 2.57
3081 3271 1.950216 CAATCGATCCCTGAGACTCGA 59.050 52.381 0.00 4.09 43.43 4.04
3082 3272 1.600023 ATCGATCCCTGAGACTCGAC 58.400 55.000 0.00 0.00 42.26 4.20
3188 3380 8.024145 AGTTACCTTCTCTACCATTGGATTAG 57.976 38.462 10.37 1.74 0.00 1.73
3238 3430 3.891049 ACCCTCAACATAAGCTGGAATC 58.109 45.455 0.00 0.00 0.00 2.52
3261 3453 4.786068 CGAAATGTGTCGCAATTATCGTTT 59.214 37.500 0.00 0.00 33.66 3.60
3268 3460 5.290158 GTGTCGCAATTATCGTTTTCCTAGA 59.710 40.000 0.00 0.00 0.00 2.43
3269 3461 6.018994 GTGTCGCAATTATCGTTTTCCTAGAT 60.019 38.462 0.00 0.00 0.00 1.98
3272 3464 5.050091 CGCAATTATCGTTTTCCTAGATGCT 60.050 40.000 0.00 0.00 0.00 3.79
3273 3465 6.145534 CGCAATTATCGTTTTCCTAGATGCTA 59.854 38.462 0.00 0.00 0.00 3.49
3274 3466 7.148573 CGCAATTATCGTTTTCCTAGATGCTAT 60.149 37.037 0.00 0.00 0.00 2.97
3275 3467 8.507249 GCAATTATCGTTTTCCTAGATGCTATT 58.493 33.333 0.00 0.00 0.00 1.73
3277 3469 7.962964 TTATCGTTTTCCTAGATGCTATTGG 57.037 36.000 0.00 0.00 0.00 3.16
3278 3470 4.127171 TCGTTTTCCTAGATGCTATTGGC 58.873 43.478 0.00 0.00 42.22 4.52
3393 3598 5.614760 CGAACCCAACTTGTTAATAGTTCG 58.385 41.667 16.76 16.76 46.01 3.95
3398 3603 6.148315 ACCCAACTTGTTAATAGTTCGTTAGC 59.852 38.462 3.68 0.00 33.73 3.09
3429 3634 7.358770 TGTAATTGCTTAATTGGCATATGGT 57.641 32.000 4.56 0.00 39.54 3.55
3444 3649 1.563924 ATGGTTGCCATGATTGCTGT 58.436 45.000 0.00 0.00 43.39 4.40
3466 3671 8.764287 GCTGTTGTTAACTTGCATTTTATCTTT 58.236 29.630 7.22 0.00 33.88 2.52
3470 3675 7.782242 TGTTAACTTGCATTTTATCTTTTGCG 58.218 30.769 7.22 0.00 37.92 4.85
3492 3697 4.693532 CAGCTTCCGTTACTGCCA 57.306 55.556 0.00 0.00 0.00 4.92
3496 3701 1.745489 CTTCCGTTACTGCCAGGGC 60.745 63.158 2.62 2.62 42.35 5.19
3555 3760 8.180706 TCTTCTGTGATGATTTCCAATTTTCA 57.819 30.769 0.00 0.00 0.00 2.69
3558 3763 7.252708 TCTGTGATGATTTCCAATTTTCATCG 58.747 34.615 7.13 0.00 44.71 3.84
3571 3776 2.106477 TTCATCGTGCCATACTTGCA 57.894 45.000 0.00 0.00 36.12 4.08
3685 3903 2.371841 TGTATCTGCCTTCCACTGTTGT 59.628 45.455 0.00 0.00 0.00 3.32
3686 3904 1.901591 ATCTGCCTTCCACTGTTGTG 58.098 50.000 0.00 0.00 43.45 3.33
3687 3905 0.819259 TCTGCCTTCCACTGTTGTGC 60.819 55.000 0.00 0.00 42.54 4.57
3688 3906 1.799258 CTGCCTTCCACTGTTGTGCC 61.799 60.000 0.00 0.00 42.54 5.01
3689 3907 1.529244 GCCTTCCACTGTTGTGCCT 60.529 57.895 0.00 0.00 42.54 4.75
3690 3908 1.518903 GCCTTCCACTGTTGTGCCTC 61.519 60.000 0.00 0.00 42.54 4.70
3691 3909 0.109342 CCTTCCACTGTTGTGCCTCT 59.891 55.000 0.00 0.00 42.54 3.69
3692 3910 1.477558 CCTTCCACTGTTGTGCCTCTT 60.478 52.381 0.00 0.00 42.54 2.85
3693 3911 1.605710 CTTCCACTGTTGTGCCTCTTG 59.394 52.381 0.00 0.00 42.54 3.02
3694 3912 0.819259 TCCACTGTTGTGCCTCTTGC 60.819 55.000 0.00 0.00 42.54 4.01
3695 3913 1.280746 CACTGTTGTGCCTCTTGCG 59.719 57.895 0.00 0.00 45.60 4.85
3709 3927 4.379394 GCCTCTTGCGATGTAAATTGTTGA 60.379 41.667 0.00 0.00 0.00 3.18
3718 3936 6.013085 CGATGTAAATTGTTGACACGGTTAG 58.987 40.000 0.00 0.00 0.00 2.34
3722 3940 7.411274 TGTAAATTGTTGACACGGTTAGAAAG 58.589 34.615 0.00 0.00 0.00 2.62
3800 4234 9.354673 TGAGATGTTCTAACTTTTTCCTGATTT 57.645 29.630 0.00 0.00 0.00 2.17
3801 4235 9.617975 GAGATGTTCTAACTTTTTCCTGATTTG 57.382 33.333 0.00 0.00 0.00 2.32
3849 4289 7.681939 TTTGTTCTTCCATATACTGTGAACC 57.318 36.000 0.00 0.00 31.97 3.62
3857 4297 4.500887 CCATATACTGTGAACCGAACGGAT 60.501 45.833 20.14 8.09 38.96 4.18
3888 4328 6.440328 ACTTGGCCATGTTATTTTTCCTACAT 59.560 34.615 18.18 0.00 0.00 2.29
3894 4369 8.872845 GCCATGTTATTTTTCCTACATTTTCTG 58.127 33.333 0.00 0.00 0.00 3.02
3914 4396 1.600636 CGACAGGTTGTGGTGCCAT 60.601 57.895 0.00 0.00 0.00 4.40
3934 4416 3.741476 GCAAGGGCTCGCCACAAG 61.741 66.667 10.51 0.00 37.98 3.16
3935 4417 3.058160 CAAGGGCTCGCCACAAGG 61.058 66.667 10.51 0.00 37.98 3.61
3936 4418 4.351054 AAGGGCTCGCCACAAGGG 62.351 66.667 10.51 0.00 37.98 3.95
3939 4421 4.329545 GGCTCGCCACAAGGGACA 62.330 66.667 2.41 0.00 40.01 4.02
3940 4422 2.743928 GCTCGCCACAAGGGACAG 60.744 66.667 0.00 0.00 40.01 3.51
3941 4423 2.743928 CTCGCCACAAGGGACAGC 60.744 66.667 0.00 0.00 40.01 4.40
3942 4424 3.535629 CTCGCCACAAGGGACAGCA 62.536 63.158 0.00 0.00 40.01 4.41
3943 4425 3.357079 CGCCACAAGGGACAGCAC 61.357 66.667 0.00 0.00 40.01 4.40
3945 4427 2.263741 GCCACAAGGGACAGCACAG 61.264 63.158 0.00 0.00 40.01 3.66
3946 4428 1.601759 CCACAAGGGACAGCACAGG 60.602 63.158 0.00 0.00 40.01 4.00
3947 4429 1.149174 CACAAGGGACAGCACAGGT 59.851 57.895 0.00 0.00 0.00 4.00
3948 4430 0.886490 CACAAGGGACAGCACAGGTC 60.886 60.000 0.00 0.00 34.52 3.85
3950 4432 2.140792 AAGGGACAGCACAGGTCGT 61.141 57.895 0.00 0.00 36.12 4.34
3951 4433 0.830444 AAGGGACAGCACAGGTCGTA 60.830 55.000 0.00 0.00 36.12 3.43
3955 4437 0.314302 GACAGCACAGGTCGTAGTGT 59.686 55.000 0.00 0.00 38.02 3.55
3971 4453 1.837051 TGTGTGAGGGAGGAAGCGT 60.837 57.895 0.00 0.00 0.00 5.07
3990 4482 1.745115 CGGCATGGCGAGGAAGAAA 60.745 57.895 35.61 0.00 0.00 2.52
4023 4515 0.250295 TGGAAGCCAAAGTCGACTGG 60.250 55.000 20.85 18.79 35.67 4.00
4043 4535 5.067283 ACTGGAACGTAAAATGTTTTCAGCT 59.933 36.000 0.00 0.00 34.78 4.24
4047 4539 5.366829 ACGTAAAATGTTTTCAGCTACCC 57.633 39.130 0.00 0.00 0.00 3.69
4056 4548 4.769488 TGTTTTCAGCTACCCAATGCATAA 59.231 37.500 0.00 0.00 0.00 1.90
4084 4677 8.477256 CAATCCCATTTACACAATTCCTACAAT 58.523 33.333 0.00 0.00 0.00 2.71
4088 4681 9.748708 CCCATTTACACAATTCCTACAATATTG 57.251 33.333 14.01 14.01 35.82 1.90
4104 4697 5.299028 ACAATATTGATGCGCTCCAAACATA 59.701 36.000 22.16 3.10 0.00 2.29
4105 4698 6.183360 ACAATATTGATGCGCTCCAAACATAA 60.183 34.615 22.16 0.00 0.00 1.90
4116 4709 4.219725 GCTCCAAACATAACCCTTAAGCAA 59.780 41.667 0.00 0.00 0.00 3.91
4126 4719 4.382386 ACCCTTAAGCAACACTGGTTAT 57.618 40.909 0.00 0.00 43.24 1.89
4127 4720 4.736473 ACCCTTAAGCAACACTGGTTATT 58.264 39.130 0.00 0.00 43.24 1.40
4130 4723 4.764823 CCTTAAGCAACACTGGTTATTCCA 59.235 41.667 0.00 0.00 43.24 3.53
4149 4743 3.561120 AAGGGAATTCCGGCGTGCA 62.561 57.895 18.30 0.00 41.52 4.57
4162 4756 1.398390 GGCGTGCAGATTCCAGTTAAG 59.602 52.381 0.00 0.00 0.00 1.85
4164 4758 2.076100 CGTGCAGATTCCAGTTAAGCA 58.924 47.619 0.00 0.00 0.00 3.91
4166 4760 2.086869 TGCAGATTCCAGTTAAGCAGC 58.913 47.619 0.00 0.00 0.00 5.25
4167 4761 2.086869 GCAGATTCCAGTTAAGCAGCA 58.913 47.619 0.00 0.00 28.96 4.41
4168 4762 2.159462 GCAGATTCCAGTTAAGCAGCAC 60.159 50.000 0.00 0.00 28.96 4.40
4171 4765 5.121811 CAGATTCCAGTTAAGCAGCACTAT 58.878 41.667 0.00 0.00 0.00 2.12
4173 4767 5.587844 AGATTCCAGTTAAGCAGCACTATTG 59.412 40.000 0.00 0.00 0.00 1.90
4243 4886 4.216472 GCCAAAACCAGGTTTAGAGAAGAG 59.784 45.833 18.38 2.77 34.43 2.85
4275 4918 1.100510 TGAATGGACCTACGACCTCG 58.899 55.000 0.00 0.00 46.33 4.63
4294 4937 6.418585 CCTCGAGGTAACAATTTACTTTCC 57.581 41.667 24.04 0.00 38.17 3.13
4295 4938 6.171213 CCTCGAGGTAACAATTTACTTTCCT 58.829 40.000 24.04 0.00 38.17 3.36
4296 4939 7.325694 CCTCGAGGTAACAATTTACTTTCCTA 58.674 38.462 24.04 0.00 38.17 2.94
4297 4940 7.820872 CCTCGAGGTAACAATTTACTTTCCTAA 59.179 37.037 24.04 0.00 38.17 2.69
4298 4941 9.211485 CTCGAGGTAACAATTTACTTTCCTAAA 57.789 33.333 3.91 0.00 38.17 1.85
4299 4942 9.729281 TCGAGGTAACAATTTACTTTCCTAAAT 57.271 29.630 0.00 0.00 38.17 1.40
4322 4965 8.794335 AATACAAGTCCTTTTAGAGATTCCAC 57.206 34.615 0.00 0.00 0.00 4.02
4323 4966 6.441088 ACAAGTCCTTTTAGAGATTCCACT 57.559 37.500 0.00 0.00 0.00 4.00
4324 4967 7.554959 ACAAGTCCTTTTAGAGATTCCACTA 57.445 36.000 0.00 0.00 0.00 2.74
4325 4968 8.152023 ACAAGTCCTTTTAGAGATTCCACTAT 57.848 34.615 0.00 0.00 0.00 2.12
4326 4969 9.268282 ACAAGTCCTTTTAGAGATTCCACTATA 57.732 33.333 0.00 0.00 0.00 1.31
4351 4994 8.873215 AAAGACTACATTCTACATTCGGTATG 57.127 34.615 0.00 0.00 40.26 2.39
4353 4996 7.426410 AGACTACATTCTACATTCGGTATGTG 58.574 38.462 10.11 1.83 46.81 3.21
4354 4997 6.513180 ACTACATTCTACATTCGGTATGTGG 58.487 40.000 10.11 7.52 46.81 4.17
4355 4998 5.353394 ACATTCTACATTCGGTATGTGGT 57.647 39.130 10.11 0.00 46.81 4.16
4356 4999 5.357257 ACATTCTACATTCGGTATGTGGTC 58.643 41.667 10.11 0.00 46.81 4.02
4357 5000 5.128827 ACATTCTACATTCGGTATGTGGTCT 59.871 40.000 10.11 0.00 46.81 3.85
4358 5001 6.322969 ACATTCTACATTCGGTATGTGGTCTA 59.677 38.462 10.11 0.00 46.81 2.59
4359 5002 5.762825 TCTACATTCGGTATGTGGTCTAC 57.237 43.478 10.11 0.00 46.81 2.59
4360 5003 5.195185 TCTACATTCGGTATGTGGTCTACA 58.805 41.667 10.11 0.00 46.81 2.74
4361 5004 4.386867 ACATTCGGTATGTGGTCTACAG 57.613 45.455 0.00 0.00 45.71 2.74
4362 5005 2.953466 TTCGGTATGTGGTCTACAGC 57.047 50.000 0.00 0.00 43.80 4.40
4363 5006 2.139323 TCGGTATGTGGTCTACAGCT 57.861 50.000 0.00 0.00 43.80 4.24
4364 5007 2.453521 TCGGTATGTGGTCTACAGCTT 58.546 47.619 0.00 0.00 43.80 3.74
4365 5008 2.165641 TCGGTATGTGGTCTACAGCTTG 59.834 50.000 0.00 0.00 43.80 4.01
4366 5009 2.094182 CGGTATGTGGTCTACAGCTTGT 60.094 50.000 0.00 0.00 43.80 3.16
4367 5010 3.129813 CGGTATGTGGTCTACAGCTTGTA 59.870 47.826 0.00 0.00 43.80 2.41
4382 5025 7.005709 ACAGCTTGTAGACTTACATTTAGGT 57.994 36.000 0.00 0.00 39.43 3.08
4383 5026 7.450903 ACAGCTTGTAGACTTACATTTAGGTT 58.549 34.615 0.00 0.00 39.43 3.50
4384 5027 7.603024 ACAGCTTGTAGACTTACATTTAGGTTC 59.397 37.037 0.00 0.00 39.43 3.62
4385 5028 6.812160 AGCTTGTAGACTTACATTTAGGTTCG 59.188 38.462 0.00 0.00 39.43 3.95
4386 5029 6.035758 GCTTGTAGACTTACATTTAGGTTCGG 59.964 42.308 0.00 0.00 39.43 4.30
4387 5030 6.839124 TGTAGACTTACATTTAGGTTCGGA 57.161 37.500 0.00 0.00 34.91 4.55
4388 5031 6.860080 TGTAGACTTACATTTAGGTTCGGAG 58.140 40.000 0.00 0.00 34.91 4.63
4389 5032 6.660521 TGTAGACTTACATTTAGGTTCGGAGA 59.339 38.462 0.00 0.00 34.91 3.71
4390 5033 6.210287 AGACTTACATTTAGGTTCGGAGAG 57.790 41.667 0.00 0.00 38.43 3.20
4391 5034 5.950549 AGACTTACATTTAGGTTCGGAGAGA 59.049 40.000 0.00 0.00 38.43 3.10
4392 5035 6.095720 AGACTTACATTTAGGTTCGGAGAGAG 59.904 42.308 0.00 0.00 38.43 3.20
4393 5036 5.715753 ACTTACATTTAGGTTCGGAGAGAGT 59.284 40.000 0.00 0.00 38.43 3.24
4394 5037 6.888632 ACTTACATTTAGGTTCGGAGAGAGTA 59.111 38.462 0.00 0.00 38.43 2.59
4395 5038 5.579564 ACATTTAGGTTCGGAGAGAGTAC 57.420 43.478 0.00 0.00 38.43 2.73
4396 5039 5.262804 ACATTTAGGTTCGGAGAGAGTACT 58.737 41.667 0.00 0.00 38.43 2.73
4397 5040 6.421485 ACATTTAGGTTCGGAGAGAGTACTA 58.579 40.000 0.00 0.00 38.43 1.82
4398 5041 6.543100 ACATTTAGGTTCGGAGAGAGTACTAG 59.457 42.308 0.00 0.00 38.43 2.57
4399 5042 3.564053 AGGTTCGGAGAGAGTACTAGG 57.436 52.381 0.00 0.00 38.43 3.02
4400 5043 1.948834 GGTTCGGAGAGAGTACTAGGC 59.051 57.143 0.00 0.00 38.43 3.93
4401 5044 1.948834 GTTCGGAGAGAGTACTAGGCC 59.051 57.143 0.00 0.00 38.43 5.19
4402 5045 0.473326 TCGGAGAGAGTACTAGGCCC 59.527 60.000 0.00 0.00 0.00 5.80
4403 5046 0.183014 CGGAGAGAGTACTAGGCCCA 59.817 60.000 0.00 0.00 0.00 5.36
4404 5047 1.816183 CGGAGAGAGTACTAGGCCCAG 60.816 61.905 0.00 0.00 0.00 4.45
4405 5048 1.215924 GGAGAGAGTACTAGGCCCAGT 59.784 57.143 9.37 9.37 0.00 4.00
4406 5049 2.358405 GGAGAGAGTACTAGGCCCAGTT 60.358 54.545 9.77 0.00 0.00 3.16
4407 5050 2.953648 GAGAGAGTACTAGGCCCAGTTC 59.046 54.545 9.77 4.20 0.00 3.01
4408 5051 2.583566 AGAGAGTACTAGGCCCAGTTCT 59.416 50.000 9.77 9.98 0.00 3.01
4409 5052 3.011934 AGAGAGTACTAGGCCCAGTTCTT 59.988 47.826 9.77 1.06 0.00 2.52
4410 5053 4.230041 AGAGAGTACTAGGCCCAGTTCTTA 59.770 45.833 9.77 0.00 0.00 2.10
4411 5054 4.279982 AGAGTACTAGGCCCAGTTCTTAC 58.720 47.826 9.77 1.05 0.00 2.34
4412 5055 4.017314 AGAGTACTAGGCCCAGTTCTTACT 60.017 45.833 9.77 6.67 34.00 2.24
4413 5056 5.193325 AGAGTACTAGGCCCAGTTCTTACTA 59.807 44.000 9.77 0.00 31.96 1.82
4414 5057 5.447757 AGTACTAGGCCCAGTTCTTACTAG 58.552 45.833 9.77 0.00 35.31 2.57
4415 5058 3.644335 ACTAGGCCCAGTTCTTACTAGG 58.356 50.000 0.00 0.00 36.37 3.02
4453 5117 6.767902 GGCTGACATAATTTCAGAATGGTAGA 59.232 38.462 9.37 0.00 42.81 2.59
4495 5172 3.904800 TGAAGCATCAAGGATTCGGTA 57.095 42.857 0.00 0.00 36.01 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.090532 GGGAGGGTGCGGAGGAAT 61.091 66.667 0.00 0.00 0.00 3.01
38 39 1.961180 GATGGAGGAGGTCACGGTGG 61.961 65.000 8.50 0.00 0.00 4.61
40 41 0.629596 TAGATGGAGGAGGTCACGGT 59.370 55.000 0.00 0.00 0.00 4.83
42 43 4.585162 ACTAAATAGATGGAGGAGGTCACG 59.415 45.833 0.00 0.00 0.00 4.35
43 44 6.209788 CCTACTAAATAGATGGAGGAGGTCAC 59.790 46.154 0.00 0.00 31.83 3.67
44 45 6.125860 ACCTACTAAATAGATGGAGGAGGTCA 60.126 42.308 0.00 0.00 31.83 4.02
53 54 4.020128 GGGGAGCACCTACTAAATAGATGG 60.020 50.000 0.00 0.00 40.03 3.51
55 56 5.088026 GAGGGGAGCACCTACTAAATAGAT 58.912 45.833 0.00 0.00 42.10 1.98
58 59 3.584294 GGAGGGGAGCACCTACTAAATA 58.416 50.000 0.00 0.00 42.10 1.40
62 63 1.624753 GGGAGGGGAGCACCTACTA 59.375 63.158 0.13 0.00 41.53 1.82
68 69 2.677848 GAAAGGGGAGGGGAGCAC 59.322 66.667 0.00 0.00 0.00 4.40
70 71 2.286502 AGGAAAGGGGAGGGGAGC 60.287 66.667 0.00 0.00 0.00 4.70
71 72 1.694525 GGAGGAAAGGGGAGGGGAG 60.695 68.421 0.00 0.00 0.00 4.30
72 73 2.459710 GGAGGAAAGGGGAGGGGA 59.540 66.667 0.00 0.00 0.00 4.81
73 74 2.696504 GGGAGGAAAGGGGAGGGG 60.697 72.222 0.00 0.00 0.00 4.79
74 75 2.127297 TGGGAGGAAAGGGGAGGG 59.873 66.667 0.00 0.00 0.00 4.30
75 76 0.846870 AAGTGGGAGGAAAGGGGAGG 60.847 60.000 0.00 0.00 0.00 4.30
102 103 0.719015 ATTCAGGAGGTGAGAGGGGA 59.281 55.000 0.00 0.00 36.21 4.81
139 151 3.745975 TCACTTCACATGAATTCGGTCAC 59.254 43.478 0.00 0.00 33.01 3.67
158 170 2.496899 ACCCATCCACTGTTCATCAC 57.503 50.000 0.00 0.00 0.00 3.06
176 188 9.520204 AAGCAATATGTAGCAATACATCAAAAC 57.480 29.630 4.26 0.00 40.72 2.43
184 196 9.520204 AATTTGACAAGCAATATGTAGCAATAC 57.480 29.630 0.00 0.00 36.15 1.89
190 202 8.746922 ACAACAATTTGACAAGCAATATGTAG 57.253 30.769 2.79 0.00 35.73 2.74
199 211 8.810427 CCATCAATATACAACAATTTGACAAGC 58.190 33.333 2.79 0.00 36.48 4.01
285 297 6.094193 TCCAATGTACATCAAAATGCAACA 57.906 33.333 9.23 0.00 36.84 3.33
286 298 6.036300 CCATCCAATGTACATCAAAATGCAAC 59.964 38.462 9.23 0.00 36.26 4.17
287 299 6.107343 CCATCCAATGTACATCAAAATGCAA 58.893 36.000 9.23 0.00 36.26 4.08
288 300 5.187381 ACCATCCAATGTACATCAAAATGCA 59.813 36.000 9.23 0.00 36.26 3.96
289 301 5.663456 ACCATCCAATGTACATCAAAATGC 58.337 37.500 9.23 0.00 36.26 3.56
306 318 4.218417 ACAATCTGTAGCAAACAACCATCC 59.782 41.667 0.00 0.00 37.74 3.51
310 322 4.829064 TGACAATCTGTAGCAAACAACC 57.171 40.909 0.00 0.00 37.74 3.77
315 327 8.094548 AGTAGTTACATGACAATCTGTAGCAAA 58.905 33.333 0.00 0.00 33.17 3.68
321 333 7.173218 CCAACAAGTAGTTACATGACAATCTGT 59.827 37.037 0.00 0.00 38.74 3.41
324 336 7.360946 GGTCCAACAAGTAGTTACATGACAATC 60.361 40.741 0.00 0.00 38.74 2.67
327 339 5.163290 TGGTCCAACAAGTAGTTACATGACA 60.163 40.000 0.00 0.00 38.74 3.58
329 341 5.554437 TGGTCCAACAAGTAGTTACATGA 57.446 39.130 0.00 0.00 38.74 3.07
330 342 9.778741 ATATATGGTCCAACAAGTAGTTACATG 57.221 33.333 0.00 0.00 38.74 3.21
375 387 7.064134 CCGTAATGCAGTGATCTTACTAACAAA 59.936 37.037 0.00 0.00 0.00 2.83
378 390 6.040878 ACCGTAATGCAGTGATCTTACTAAC 58.959 40.000 0.00 0.00 0.00 2.34
379 391 6.127563 TGACCGTAATGCAGTGATCTTACTAA 60.128 38.462 0.00 0.00 0.00 2.24
415 427 3.002656 CGTGGGCATGAGTGAATATGTTC 59.997 47.826 0.00 0.00 34.85 3.18
422 434 1.003839 GTCCGTGGGCATGAGTGAA 60.004 57.895 0.00 0.00 0.00 3.18
430 442 0.036765 GTCTGTAATGTCCGTGGGCA 60.037 55.000 0.00 0.00 0.00 5.36
431 443 0.036765 TGTCTGTAATGTCCGTGGGC 60.037 55.000 0.00 0.00 0.00 5.36
436 448 5.382303 GTTGTGAATTGTCTGTAATGTCCG 58.618 41.667 0.00 0.00 0.00 4.79
439 451 6.707440 TTGGTTGTGAATTGTCTGTAATGT 57.293 33.333 0.00 0.00 0.00 2.71
447 459 6.970484 ACTGTAGATTTGGTTGTGAATTGTC 58.030 36.000 0.00 0.00 0.00 3.18
457 469 4.457466 ACCGTGAAACTGTAGATTTGGTT 58.543 39.130 0.00 0.00 30.39 3.67
460 472 5.418310 ACAACCGTGAAACTGTAGATTTG 57.582 39.130 0.00 0.00 31.17 2.32
516 542 5.184864 TCTTCAAAAGCTGTTGTGGAAAAGA 59.815 36.000 16.28 13.67 0.00 2.52
522 548 5.192327 AGATTCTTCAAAAGCTGTTGTGG 57.808 39.130 16.28 10.21 0.00 4.17
536 562 7.385205 TGTGTTTAGTTGAGCTGTAGATTCTTC 59.615 37.037 0.00 0.00 0.00 2.87
545 571 2.222027 GGCTGTGTTTAGTTGAGCTGT 58.778 47.619 0.00 0.00 0.00 4.40
566 592 0.889306 AGACCTCAACGGAGCTACAC 59.111 55.000 0.00 0.00 39.96 2.90
567 593 1.174783 GAGACCTCAACGGAGCTACA 58.825 55.000 0.00 0.00 39.96 2.74
568 594 1.135344 GTGAGACCTCAACGGAGCTAC 60.135 57.143 0.70 0.00 41.85 3.58
569 595 1.174783 GTGAGACCTCAACGGAGCTA 58.825 55.000 0.70 0.00 41.85 3.32
570 596 0.540830 AGTGAGACCTCAACGGAGCT 60.541 55.000 0.70 0.00 41.85 4.09
571 597 0.109039 GAGTGAGACCTCAACGGAGC 60.109 60.000 0.70 0.00 41.85 4.70
572 598 1.470890 GAGAGTGAGACCTCAACGGAG 59.529 57.143 0.70 0.00 41.85 4.63
573 599 1.074084 AGAGAGTGAGACCTCAACGGA 59.926 52.381 0.70 0.00 41.85 4.69
574 600 1.540267 AGAGAGTGAGACCTCAACGG 58.460 55.000 0.70 0.00 41.85 4.44
575 601 3.651803 AAAGAGAGTGAGACCTCAACG 57.348 47.619 0.70 0.00 41.85 4.10
576 602 4.950050 TGAAAAGAGAGTGAGACCTCAAC 58.050 43.478 0.70 0.10 41.85 3.18
577 603 5.614324 TTGAAAAGAGAGTGAGACCTCAA 57.386 39.130 0.70 0.00 41.85 3.02
593 619 4.261741 GGTTGAGCTGCTGATTCTTGAAAA 60.262 41.667 7.01 0.00 0.00 2.29
594 620 3.254166 GGTTGAGCTGCTGATTCTTGAAA 59.746 43.478 7.01 0.00 0.00 2.69
595 621 2.816087 GGTTGAGCTGCTGATTCTTGAA 59.184 45.455 7.01 0.00 0.00 2.69
596 622 2.224597 TGGTTGAGCTGCTGATTCTTGA 60.225 45.455 7.01 0.00 0.00 3.02
597 623 2.156917 TGGTTGAGCTGCTGATTCTTG 58.843 47.619 7.01 0.00 0.00 3.02
598 624 2.574006 TGGTTGAGCTGCTGATTCTT 57.426 45.000 7.01 0.00 0.00 2.52
599 625 2.555757 GTTTGGTTGAGCTGCTGATTCT 59.444 45.455 7.01 0.00 0.00 2.40
600 626 2.294233 TGTTTGGTTGAGCTGCTGATTC 59.706 45.455 7.01 0.00 0.00 2.52
601 627 2.035066 GTGTTTGGTTGAGCTGCTGATT 59.965 45.455 7.01 0.00 0.00 2.57
602 628 1.610522 GTGTTTGGTTGAGCTGCTGAT 59.389 47.619 7.01 0.00 0.00 2.90
603 629 1.024271 GTGTTTGGTTGAGCTGCTGA 58.976 50.000 7.01 0.00 0.00 4.26
604 630 0.317269 CGTGTTTGGTTGAGCTGCTG 60.317 55.000 7.01 0.00 0.00 4.41
605 631 1.447317 CCGTGTTTGGTTGAGCTGCT 61.447 55.000 0.00 0.00 0.00 4.24
606 632 1.008538 CCGTGTTTGGTTGAGCTGC 60.009 57.895 0.00 0.00 0.00 5.25
607 633 1.008538 GCCGTGTTTGGTTGAGCTG 60.009 57.895 0.00 0.00 0.00 4.24
608 634 2.542907 CGCCGTGTTTGGTTGAGCT 61.543 57.895 0.00 0.00 0.00 4.09
609 635 1.500512 TACGCCGTGTTTGGTTGAGC 61.501 55.000 0.00 0.00 0.00 4.26
610 636 0.233848 GTACGCCGTGTTTGGTTGAG 59.766 55.000 0.00 0.00 0.00 3.02
611 637 0.461516 TGTACGCCGTGTTTGGTTGA 60.462 50.000 0.00 0.00 0.00 3.18
612 638 0.041663 CTGTACGCCGTGTTTGGTTG 60.042 55.000 0.00 0.00 0.00 3.77
613 639 1.778027 GCTGTACGCCGTGTTTGGTT 61.778 55.000 0.00 0.00 0.00 3.67
614 640 2.248835 GCTGTACGCCGTGTTTGGT 61.249 57.895 0.00 0.00 0.00 3.67
615 641 1.897398 GAGCTGTACGCCGTGTTTGG 61.897 60.000 0.00 0.00 40.39 3.28
616 642 1.491563 GAGCTGTACGCCGTGTTTG 59.508 57.895 0.00 0.00 40.39 2.93
617 643 1.666872 GGAGCTGTACGCCGTGTTT 60.667 57.895 0.00 0.00 40.39 2.83
618 644 2.048503 GGAGCTGTACGCCGTGTT 60.049 61.111 0.00 0.00 40.39 3.32
623 649 1.805945 CTCAACGGAGCTGTACGCC 60.806 63.158 0.00 0.00 40.39 5.68
624 650 1.805945 CCTCAACGGAGCTGTACGC 60.806 63.158 0.00 2.08 39.96 4.42
625 651 0.456312 GACCTCAACGGAGCTGTACG 60.456 60.000 0.00 0.00 39.96 3.67
626 652 0.889306 AGACCTCAACGGAGCTGTAC 59.111 55.000 0.00 0.00 39.96 2.90
627 653 1.174783 GAGACCTCAACGGAGCTGTA 58.825 55.000 0.00 0.00 39.96 2.74
643 669 2.941064 CCGTGTACTATTCGGAGTGAGA 59.059 50.000 11.65 0.00 46.05 3.27
649 675 1.105457 CCCACCGTGTACTATTCGGA 58.895 55.000 19.64 0.00 46.05 4.55
655 681 0.607762 TACGCACCCACCGTGTACTA 60.608 55.000 0.00 0.00 44.97 1.82
658 684 1.462731 AACTACGCACCCACCGTGTA 61.463 55.000 0.00 0.00 44.97 2.90
700 726 2.892640 GAAATCTTTGGGCCGGGC 59.107 61.111 22.00 22.00 0.00 6.13
726 753 5.369404 AGAAGTTCCATTTGTTTTGGGGAAT 59.631 36.000 0.00 0.00 39.59 3.01
755 782 8.611757 GTGAGCTGTTCCATTTGTTTTATTTTT 58.388 29.630 0.00 0.00 0.00 1.94
756 783 7.042791 CGTGAGCTGTTCCATTTGTTTTATTTT 60.043 33.333 0.00 0.00 0.00 1.82
757 784 6.420604 CGTGAGCTGTTCCATTTGTTTTATTT 59.579 34.615 0.00 0.00 0.00 1.40
758 785 5.920273 CGTGAGCTGTTCCATTTGTTTTATT 59.080 36.000 0.00 0.00 0.00 1.40
759 786 5.460646 CGTGAGCTGTTCCATTTGTTTTAT 58.539 37.500 0.00 0.00 0.00 1.40
760 787 4.854399 CGTGAGCTGTTCCATTTGTTTTA 58.146 39.130 0.00 0.00 0.00 1.52
761 788 3.705604 CGTGAGCTGTTCCATTTGTTTT 58.294 40.909 0.00 0.00 0.00 2.43
762 789 3.354089 CGTGAGCTGTTCCATTTGTTT 57.646 42.857 0.00 0.00 0.00 2.83
813 841 3.730761 GCACGCAACCTGCCTCTG 61.731 66.667 0.00 0.00 41.12 3.35
908 970 2.054232 TCCGACTAGGAGAAGCGAAT 57.946 50.000 0.00 0.00 45.98 3.34
977 1042 2.242196 CCTTCTCTCTCTGACTCCCTCT 59.758 54.545 0.00 0.00 0.00 3.69
978 1043 2.654863 CCTTCTCTCTCTGACTCCCTC 58.345 57.143 0.00 0.00 0.00 4.30
979 1044 1.287739 CCCTTCTCTCTCTGACTCCCT 59.712 57.143 0.00 0.00 0.00 4.20
980 1045 1.286553 TCCCTTCTCTCTCTGACTCCC 59.713 57.143 0.00 0.00 0.00 4.30
982 1047 2.958355 CCATCCCTTCTCTCTCTGACTC 59.042 54.545 0.00 0.00 0.00 3.36
983 1048 2.359143 CCCATCCCTTCTCTCTCTGACT 60.359 54.545 0.00 0.00 0.00 3.41
984 1049 2.038659 CCCATCCCTTCTCTCTCTGAC 58.961 57.143 0.00 0.00 0.00 3.51
985 1050 1.062581 CCCCATCCCTTCTCTCTCTGA 60.063 57.143 0.00 0.00 0.00 3.27
987 1052 1.062505 GTCCCCATCCCTTCTCTCTCT 60.063 57.143 0.00 0.00 0.00 3.10
988 1053 1.419381 GTCCCCATCCCTTCTCTCTC 58.581 60.000 0.00 0.00 0.00 3.20
989 1054 0.397816 CGTCCCCATCCCTTCTCTCT 60.398 60.000 0.00 0.00 0.00 3.10
990 1055 1.403687 CCGTCCCCATCCCTTCTCTC 61.404 65.000 0.00 0.00 0.00 3.20
991 1056 1.383248 CCGTCCCCATCCCTTCTCT 60.383 63.158 0.00 0.00 0.00 3.10
992 1057 1.382695 TCCGTCCCCATCCCTTCTC 60.383 63.158 0.00 0.00 0.00 2.87
993 1058 1.383248 CTCCGTCCCCATCCCTTCT 60.383 63.158 0.00 0.00 0.00 2.85
994 1059 3.108288 GCTCCGTCCCCATCCCTTC 62.108 68.421 0.00 0.00 0.00 3.46
995 1060 3.090532 GCTCCGTCCCCATCCCTT 61.091 66.667 0.00 0.00 0.00 3.95
1167 1248 0.669318 TCTGGTTCATGCCGACGTTC 60.669 55.000 0.00 0.00 0.00 3.95
1262 1343 1.148273 CATGGGGGATGGTACGGTG 59.852 63.158 0.00 0.00 0.00 4.94
1263 1344 2.076184 CCATGGGGGATGGTACGGT 61.076 63.158 2.85 0.00 46.20 4.83
1264 1345 2.836154 CCATGGGGGATGGTACGG 59.164 66.667 2.85 0.00 46.20 4.02
1271 1352 2.369291 AGAGCAGCCATGGGGGAT 60.369 61.111 15.13 0.00 40.01 3.85
1272 1353 3.414193 CAGAGCAGCCATGGGGGA 61.414 66.667 15.13 0.00 40.01 4.81
1273 1354 2.693896 GATCAGAGCAGCCATGGGGG 62.694 65.000 15.13 0.00 40.85 5.40
1281 1362 0.251354 TTGGTCCAGATCAGAGCAGC 59.749 55.000 14.74 0.00 42.23 5.25
1409 1505 1.204231 GAGGAGAGTTACCCGGTGAAC 59.796 57.143 0.00 3.94 0.00 3.18
1422 1518 0.102844 GCAGTAGCAGCAGAGGAGAG 59.897 60.000 0.00 0.00 41.58 3.20
1461 1576 2.622436 AGAGAGTTATTGTTGCTCGCC 58.378 47.619 0.00 0.00 34.69 5.54
1464 1579 6.162777 AGACTGAAGAGAGTTATTGTTGCTC 58.837 40.000 0.00 0.00 0.00 4.26
1466 1581 5.061560 CGAGACTGAAGAGAGTTATTGTTGC 59.938 44.000 0.00 0.00 0.00 4.17
1467 1582 6.088749 CACGAGACTGAAGAGAGTTATTGTTG 59.911 42.308 0.00 0.00 0.00 3.33
1469 1584 5.704888 CACGAGACTGAAGAGAGTTATTGT 58.295 41.667 0.00 0.00 0.00 2.71
1470 1585 4.560819 GCACGAGACTGAAGAGAGTTATTG 59.439 45.833 0.00 0.00 0.00 1.90
1471 1586 4.461081 AGCACGAGACTGAAGAGAGTTATT 59.539 41.667 0.00 0.00 0.00 1.40
1472 1587 4.013728 AGCACGAGACTGAAGAGAGTTAT 58.986 43.478 0.00 0.00 0.00 1.89
1473 1588 3.189495 CAGCACGAGACTGAAGAGAGTTA 59.811 47.826 0.00 0.00 37.32 2.24
1474 1589 2.030363 CAGCACGAGACTGAAGAGAGTT 60.030 50.000 0.00 0.00 37.32 3.01
1475 1590 1.539388 CAGCACGAGACTGAAGAGAGT 59.461 52.381 0.00 0.00 37.32 3.24
1476 1591 1.539388 ACAGCACGAGACTGAAGAGAG 59.461 52.381 10.26 0.00 38.55 3.20
1477 1592 1.537638 GACAGCACGAGACTGAAGAGA 59.462 52.381 10.26 0.00 38.55 3.10
1478 1593 1.539388 AGACAGCACGAGACTGAAGAG 59.461 52.381 10.26 0.00 38.55 2.85
1479 1594 1.610363 AGACAGCACGAGACTGAAGA 58.390 50.000 10.26 0.00 38.55 2.87
1480 1595 2.323959 GAAGACAGCACGAGACTGAAG 58.676 52.381 10.26 0.00 38.55 3.02
1481 1596 1.000163 GGAAGACAGCACGAGACTGAA 60.000 52.381 10.26 0.00 38.55 3.02
1482 1597 0.598562 GGAAGACAGCACGAGACTGA 59.401 55.000 10.26 0.00 38.55 3.41
1483 1598 0.315251 TGGAAGACAGCACGAGACTG 59.685 55.000 0.00 0.00 41.08 3.51
1484 1599 1.203523 GATGGAAGACAGCACGAGACT 59.796 52.381 0.00 0.00 35.03 3.24
1485 1600 1.634702 GATGGAAGACAGCACGAGAC 58.365 55.000 0.00 0.00 35.03 3.36
1486 1601 0.171231 CGATGGAAGACAGCACGAGA 59.829 55.000 0.00 0.00 34.42 4.04
1487 1602 0.171231 TCGATGGAAGACAGCACGAG 59.829 55.000 0.00 0.00 34.42 4.18
1488 1603 0.109272 GTCGATGGAAGACAGCACGA 60.109 55.000 0.00 0.00 38.42 4.35
1489 1604 0.109086 AGTCGATGGAAGACAGCACG 60.109 55.000 0.00 0.00 40.84 5.34
1490 1605 2.924290 GTTAGTCGATGGAAGACAGCAC 59.076 50.000 0.00 0.00 40.84 4.40
1491 1606 2.826128 AGTTAGTCGATGGAAGACAGCA 59.174 45.455 0.00 0.00 40.84 4.41
1492 1607 3.119459 TGAGTTAGTCGATGGAAGACAGC 60.119 47.826 0.00 0.00 40.84 4.40
1493 1608 4.703645 TGAGTTAGTCGATGGAAGACAG 57.296 45.455 0.00 0.00 40.84 3.51
1494 1609 4.705023 TGATGAGTTAGTCGATGGAAGACA 59.295 41.667 0.00 0.00 40.84 3.41
1495 1610 5.038033 GTGATGAGTTAGTCGATGGAAGAC 58.962 45.833 0.00 0.00 38.81 3.01
1496 1611 4.705023 TGTGATGAGTTAGTCGATGGAAGA 59.295 41.667 0.00 0.00 0.00 2.87
1497 1612 4.998788 TGTGATGAGTTAGTCGATGGAAG 58.001 43.478 0.00 0.00 0.00 3.46
1498 1613 5.598416 ATGTGATGAGTTAGTCGATGGAA 57.402 39.130 0.00 0.00 0.00 3.53
1499 1614 5.360999 AGAATGTGATGAGTTAGTCGATGGA 59.639 40.000 0.00 0.00 0.00 3.41
1500 1615 5.461407 CAGAATGTGATGAGTTAGTCGATGG 59.539 44.000 0.00 0.00 0.00 3.51
1501 1616 5.461407 CCAGAATGTGATGAGTTAGTCGATG 59.539 44.000 0.00 0.00 0.00 3.84
1502 1617 5.595885 CCAGAATGTGATGAGTTAGTCGAT 58.404 41.667 0.00 0.00 0.00 3.59
1503 1618 4.678044 GCCAGAATGTGATGAGTTAGTCGA 60.678 45.833 0.00 0.00 0.00 4.20
1504 1619 3.553511 GCCAGAATGTGATGAGTTAGTCG 59.446 47.826 0.00 0.00 0.00 4.18
1505 1620 3.553511 CGCCAGAATGTGATGAGTTAGTC 59.446 47.826 0.00 0.00 0.00 2.59
1506 1621 3.525537 CGCCAGAATGTGATGAGTTAGT 58.474 45.455 0.00 0.00 0.00 2.24
1507 1622 2.868583 CCGCCAGAATGTGATGAGTTAG 59.131 50.000 0.00 0.00 0.00 2.34
1508 1623 2.905075 CCGCCAGAATGTGATGAGTTA 58.095 47.619 0.00 0.00 0.00 2.24
1509 1624 1.742761 CCGCCAGAATGTGATGAGTT 58.257 50.000 0.00 0.00 0.00 3.01
1510 1625 0.745845 GCCGCCAGAATGTGATGAGT 60.746 55.000 0.00 0.00 0.00 3.41
1511 1626 1.769098 CGCCGCCAGAATGTGATGAG 61.769 60.000 0.00 0.00 0.00 2.90
1512 1627 1.815003 CGCCGCCAGAATGTGATGA 60.815 57.895 0.00 0.00 0.00 2.92
1513 1628 2.108514 ACGCCGCCAGAATGTGATG 61.109 57.895 0.00 0.00 0.00 3.07
1514 1629 2.108514 CACGCCGCCAGAATGTGAT 61.109 57.895 0.00 0.00 32.39 3.06
1525 1640 3.567797 GAAGATCCTGCACGCCGC 61.568 66.667 0.00 0.00 42.89 6.53
1545 1660 0.905357 GCAGGAAGAGGAGCTGGTTA 59.095 55.000 0.00 0.00 0.00 2.85
1661 1787 0.038166 GCATCCAAGGGTCAGGTTGA 59.962 55.000 0.00 0.00 0.00 3.18
1665 1791 1.479323 CATTTGCATCCAAGGGTCAGG 59.521 52.381 0.00 0.00 31.52 3.86
1667 1793 0.896923 GCATTTGCATCCAAGGGTCA 59.103 50.000 0.00 0.00 41.59 4.02
1668 1794 0.176449 GGCATTTGCATCCAAGGGTC 59.824 55.000 4.74 0.00 44.36 4.46
1669 1795 0.544833 TGGCATTTGCATCCAAGGGT 60.545 50.000 4.74 0.00 44.36 4.34
1690 1854 2.095768 TCGTAGTTCGTTACGGTTCAGG 60.096 50.000 4.53 0.00 44.82 3.86
1718 1882 4.346730 TGGTCAGAATCCAGAAATGCATT 58.653 39.130 5.99 5.99 0.00 3.56
1738 1913 1.361668 CGGTTCGGTTCAGCATCTGG 61.362 60.000 0.00 0.00 31.51 3.86
1741 1916 1.392510 GTTACGGTTCGGTTCAGCATC 59.607 52.381 0.00 0.00 0.00 3.91
1752 1927 7.586747 TCATTTTGGTAATTCTGTTACGGTTC 58.413 34.615 0.00 0.00 0.00 3.62
1755 1930 7.985476 AGATCATTTTGGTAATTCTGTTACGG 58.015 34.615 0.00 0.00 0.00 4.02
1756 1931 9.277565 CAAGATCATTTTGGTAATTCTGTTACG 57.722 33.333 0.00 0.00 0.00 3.18
1759 1934 9.696917 GAACAAGATCATTTTGGTAATTCTGTT 57.303 29.630 0.00 0.00 0.00 3.16
1760 1935 8.306761 GGAACAAGATCATTTTGGTAATTCTGT 58.693 33.333 0.00 0.00 0.00 3.41
1761 1936 8.306038 TGGAACAAGATCATTTTGGTAATTCTG 58.694 33.333 0.00 0.00 31.92 3.02
1762 1937 8.421249 TGGAACAAGATCATTTTGGTAATTCT 57.579 30.769 0.00 0.00 31.92 2.40
1763 1938 7.276438 GCTGGAACAAGATCATTTTGGTAATTC 59.724 37.037 0.00 0.00 38.70 2.17
1764 1939 7.099120 GCTGGAACAAGATCATTTTGGTAATT 58.901 34.615 0.00 0.00 38.70 1.40
1765 1940 6.625740 CGCTGGAACAAGATCATTTTGGTAAT 60.626 38.462 0.00 0.00 38.70 1.89
1766 1941 5.335583 CGCTGGAACAAGATCATTTTGGTAA 60.336 40.000 0.00 0.00 38.70 2.85
1767 1942 4.155826 CGCTGGAACAAGATCATTTTGGTA 59.844 41.667 0.00 0.00 38.70 3.25
1768 1943 3.057315 CGCTGGAACAAGATCATTTTGGT 60.057 43.478 0.00 0.00 38.70 3.67
1769 1944 3.057315 ACGCTGGAACAAGATCATTTTGG 60.057 43.478 0.00 0.00 38.70 3.28
1770 1945 4.161333 GACGCTGGAACAAGATCATTTTG 58.839 43.478 0.00 0.00 38.70 2.44
1771 1946 3.120199 CGACGCTGGAACAAGATCATTTT 60.120 43.478 0.00 0.00 38.70 1.82
1772 1947 2.416547 CGACGCTGGAACAAGATCATTT 59.583 45.455 0.00 0.00 38.70 2.32
1773 1948 2.002586 CGACGCTGGAACAAGATCATT 58.997 47.619 0.00 0.00 38.70 2.57
1774 1949 1.204704 TCGACGCTGGAACAAGATCAT 59.795 47.619 0.00 0.00 38.70 2.45
1775 1950 0.601057 TCGACGCTGGAACAAGATCA 59.399 50.000 0.00 0.00 38.70 2.92
1776 1951 1.656095 CTTCGACGCTGGAACAAGATC 59.344 52.381 0.00 0.00 38.70 2.75
1777 1952 1.000955 ACTTCGACGCTGGAACAAGAT 59.999 47.619 0.00 0.00 38.70 2.40
1778 1953 0.387929 ACTTCGACGCTGGAACAAGA 59.612 50.000 0.00 0.00 38.70 3.02
1779 1954 0.508641 CACTTCGACGCTGGAACAAG 59.491 55.000 0.00 0.00 38.70 3.16
1780 1955 0.103390 TCACTTCGACGCTGGAACAA 59.897 50.000 0.00 0.00 38.70 2.83
1781 1956 0.317160 ATCACTTCGACGCTGGAACA 59.683 50.000 0.00 0.00 0.00 3.18
1782 1957 0.992802 GATCACTTCGACGCTGGAAC 59.007 55.000 0.00 0.00 0.00 3.62
1911 2086 2.412323 CCAGACAGCGCATTGGCAT 61.412 57.895 11.47 0.00 41.24 4.40
1912 2087 3.057548 CCAGACAGCGCATTGGCA 61.058 61.111 11.47 0.00 41.24 4.92
1982 2157 1.981256 AAATTGAACTGGAGCGTGGT 58.019 45.000 0.00 0.00 0.00 4.16
1998 2173 2.514803 CGAGGTTCCAGGTTCCAAAAT 58.485 47.619 5.68 0.00 0.00 1.82
2017 2192 0.108615 CTAAGAGGCACAGGACACCG 60.109 60.000 0.00 0.00 0.00 4.94
2056 2231 5.939764 TCACCTGTATGACAAGATAAGCT 57.060 39.130 0.00 0.00 0.00 3.74
2077 2252 4.240096 CTGAAAACAACCCAATCTGCATC 58.760 43.478 0.00 0.00 0.00 3.91
2167 2348 2.132089 CTAACACCGGGGCCTGGAAA 62.132 60.000 37.99 17.43 0.00 3.13
2242 2423 1.428912 ACCCCAGTCAACACCATGAAT 59.571 47.619 0.00 0.00 0.00 2.57
2293 2474 4.383552 GCTATGATTTCTGTCCCTGTCAGT 60.384 45.833 0.00 0.00 34.86 3.41
2366 2547 8.958119 TGGTCATACAAGTTCTATTGTAATCC 57.042 34.615 3.66 7.08 45.91 3.01
2374 2555 6.040504 TCGTAGCATGGTCATACAAGTTCTAT 59.959 38.462 0.00 0.00 0.00 1.98
2397 2578 0.738975 TCGGAGAGGTTAGCACATCG 59.261 55.000 0.00 0.00 38.81 3.84
2501 2682 4.530946 ACCAGAGAAGGTCCGAGAATTTTA 59.469 41.667 0.00 0.00 37.28 1.52
2664 2854 2.988493 TCGAATTACCCGAAACTTGACG 59.012 45.455 0.00 0.00 32.64 4.35
2679 2869 8.229137 CACAATGCAAAATAACCAATTCGAATT 58.771 29.630 17.60 17.60 0.00 2.17
2692 2882 7.371159 TCAACCGATAAACACAATGCAAAATA 58.629 30.769 0.00 0.00 0.00 1.40
2743 2933 4.549458 GCACCATTGCCATTATGTCATAC 58.451 43.478 0.00 0.00 43.66 2.39
2844 3034 3.764237 TTCGTGGGAATTCTATAGCCC 57.236 47.619 5.23 6.28 41.08 5.19
2894 3084 2.040278 TCCAATGAGGCTGCAAGTAGTT 59.960 45.455 0.50 0.00 37.29 2.24
3065 3255 0.810426 TCGTCGAGTCTCAGGGATCG 60.810 60.000 0.00 0.00 36.54 3.69
3081 3271 2.981859 AAAACACAGTGGACTCTCGT 57.018 45.000 5.31 0.00 0.00 4.18
3105 3297 4.022155 TGCTGATGCTGCTGTTATGAAAAA 60.022 37.500 0.00 0.00 40.48 1.94
3106 3298 3.506844 TGCTGATGCTGCTGTTATGAAAA 59.493 39.130 0.00 0.00 40.48 2.29
3107 3299 3.083293 TGCTGATGCTGCTGTTATGAAA 58.917 40.909 0.00 0.00 40.48 2.69
3108 3300 2.681344 CTGCTGATGCTGCTGTTATGAA 59.319 45.455 0.00 0.00 40.48 2.57
3109 3301 2.093341 TCTGCTGATGCTGCTGTTATGA 60.093 45.455 0.00 0.00 40.48 2.15
3110 3302 2.285977 TCTGCTGATGCTGCTGTTATG 58.714 47.619 0.00 0.00 40.48 1.90
3111 3303 2.704464 TCTGCTGATGCTGCTGTTAT 57.296 45.000 0.00 0.00 40.48 1.89
3112 3304 2.477845 TTCTGCTGATGCTGCTGTTA 57.522 45.000 0.00 0.00 40.48 2.41
3113 3305 1.835494 ATTCTGCTGATGCTGCTGTT 58.165 45.000 0.00 0.00 40.48 3.16
3114 3306 1.835494 AATTCTGCTGATGCTGCTGT 58.165 45.000 0.00 0.00 40.48 4.40
3115 3307 2.286242 CGTAATTCTGCTGATGCTGCTG 60.286 50.000 0.00 0.00 40.48 4.41
3116 3308 1.938577 CGTAATTCTGCTGATGCTGCT 59.061 47.619 0.00 0.00 40.48 4.24
3117 3309 1.667724 ACGTAATTCTGCTGATGCTGC 59.332 47.619 0.00 0.00 40.48 5.25
3188 3380 5.705905 GGGTATGAGCCTTAATGATGTAACC 59.294 44.000 0.00 0.00 31.81 2.85
3238 3430 3.923412 ACGATAATTGCGACACATTTCG 58.077 40.909 9.14 0.00 42.15 3.46
3272 3464 2.093181 ACATCGTTAGCCAGTGCCAATA 60.093 45.455 0.00 0.00 38.69 1.90
3273 3465 1.340017 ACATCGTTAGCCAGTGCCAAT 60.340 47.619 0.00 0.00 38.69 3.16
3274 3466 0.036164 ACATCGTTAGCCAGTGCCAA 59.964 50.000 0.00 0.00 38.69 4.52
3275 3467 0.673333 CACATCGTTAGCCAGTGCCA 60.673 55.000 0.00 0.00 38.69 4.92
3278 3470 0.735978 TCGCACATCGTTAGCCAGTG 60.736 55.000 0.00 0.00 39.67 3.66
3279 3471 0.175760 ATCGCACATCGTTAGCCAGT 59.824 50.000 0.00 0.00 39.67 4.00
3280 3472 0.578683 CATCGCACATCGTTAGCCAG 59.421 55.000 0.00 0.00 39.67 4.85
3282 3474 1.502231 ATCATCGCACATCGTTAGCC 58.498 50.000 0.00 0.00 39.67 3.93
3398 3603 9.701098 ATGCCAATTAAGCAATTACAATGATAG 57.299 29.630 6.44 0.00 44.83 2.08
3405 3610 7.358770 ACCATATGCCAATTAAGCAATTACA 57.641 32.000 6.44 0.00 44.83 2.41
3429 3634 4.039004 AGTTAACAACAGCAATCATGGCAA 59.961 37.500 8.61 0.00 0.00 4.52
3444 3649 8.272176 CGCAAAAGATAAAATGCAAGTTAACAA 58.728 29.630 8.61 0.00 38.69 2.83
3470 3675 1.071605 CAGTAACGGAAGCTGCTGAC 58.928 55.000 7.81 0.00 0.00 3.51
3479 3684 2.349755 GCCCTGGCAGTAACGGAA 59.650 61.111 14.43 0.00 41.49 4.30
3492 3697 1.264749 TATTGCAGAGTCGGTGCCCT 61.265 55.000 2.22 0.00 40.43 5.19
3571 3776 3.698040 CCAGCTCCAGACATAATTGCTTT 59.302 43.478 0.00 0.00 0.00 3.51
3640 3858 4.816925 ACAGAAGCAAAGTAAGAACACTCC 59.183 41.667 0.00 0.00 0.00 3.85
3690 3908 4.318071 CGTGTCAACAATTTACATCGCAAG 59.682 41.667 0.00 0.00 0.00 4.01
3691 3909 4.215201 CGTGTCAACAATTTACATCGCAA 58.785 39.130 0.00 0.00 0.00 4.85
3692 3910 3.364465 CCGTGTCAACAATTTACATCGCA 60.364 43.478 0.00 0.00 0.00 5.10
3693 3911 3.160545 CCGTGTCAACAATTTACATCGC 58.839 45.455 0.00 0.00 0.00 4.58
3694 3912 4.398549 ACCGTGTCAACAATTTACATCG 57.601 40.909 0.00 0.00 0.00 3.84
3695 3913 7.124347 TCTAACCGTGTCAACAATTTACATC 57.876 36.000 0.00 0.00 0.00 3.06
3709 3927 3.074412 CAAGATGGCTTTCTAACCGTGT 58.926 45.455 0.00 0.00 30.14 4.49
3718 3936 0.169009 GGCGACACAAGATGGCTTTC 59.831 55.000 0.00 0.00 31.94 2.62
3722 3940 1.971167 TTGGGCGACACAAGATGGC 60.971 57.895 0.00 0.00 0.00 4.40
3824 4261 7.065803 CGGTTCACAGTATATGGAAGAACAAAT 59.934 37.037 0.00 0.00 39.26 2.32
3841 4281 2.259618 CTACATCCGTTCGGTTCACAG 58.740 52.381 11.04 0.85 0.00 3.66
3843 4283 2.358939 ACTACATCCGTTCGGTTCAC 57.641 50.000 11.04 0.00 0.00 3.18
3844 4284 3.084039 AGTACTACATCCGTTCGGTTCA 58.916 45.455 11.04 0.00 0.00 3.18
3845 4285 3.772060 AGTACTACATCCGTTCGGTTC 57.228 47.619 11.04 0.00 0.00 3.62
3846 4286 3.367703 CCAAGTACTACATCCGTTCGGTT 60.368 47.826 11.04 0.00 0.00 4.44
3847 4287 2.165030 CCAAGTACTACATCCGTTCGGT 59.835 50.000 11.04 0.00 0.00 4.69
3848 4288 2.805845 CCAAGTACTACATCCGTTCGG 58.194 52.381 4.74 4.74 0.00 4.30
3849 4289 2.190981 GCCAAGTACTACATCCGTTCG 58.809 52.381 0.00 0.00 0.00 3.95
3857 4297 7.094118 GGAAAAATAACATGGCCAAGTACTACA 60.094 37.037 15.13 0.00 0.00 2.74
3888 4328 1.021202 CACAACCTGTCGCCAGAAAA 58.979 50.000 0.00 0.00 41.50 2.29
3894 4369 3.660111 GCACCACAACCTGTCGCC 61.660 66.667 0.00 0.00 0.00 5.54
3931 4413 1.669115 CGACCTGTGCTGTCCCTTG 60.669 63.158 0.00 0.00 0.00 3.61
3934 4416 1.215647 CTACGACCTGTGCTGTCCC 59.784 63.158 0.00 0.00 0.00 4.46
3935 4417 0.388649 CACTACGACCTGTGCTGTCC 60.389 60.000 0.00 0.00 0.00 4.02
3936 4418 0.314302 ACACTACGACCTGTGCTGTC 59.686 55.000 0.00 0.00 37.68 3.51
3937 4419 0.032130 CACACTACGACCTGTGCTGT 59.968 55.000 0.00 0.00 37.68 4.40
3938 4420 0.032130 ACACACTACGACCTGTGCTG 59.968 55.000 9.87 0.00 41.35 4.41
3939 4421 0.032130 CACACACTACGACCTGTGCT 59.968 55.000 9.87 0.00 41.35 4.40
3940 4422 0.031585 TCACACACTACGACCTGTGC 59.968 55.000 9.87 0.00 41.35 4.57
3941 4423 1.335964 CCTCACACACTACGACCTGTG 60.336 57.143 8.79 8.79 42.98 3.66
3942 4424 0.959553 CCTCACACACTACGACCTGT 59.040 55.000 0.00 0.00 0.00 4.00
3943 4425 0.243907 CCCTCACACACTACGACCTG 59.756 60.000 0.00 0.00 0.00 4.00
3945 4427 0.526662 CTCCCTCACACACTACGACC 59.473 60.000 0.00 0.00 0.00 4.79
3946 4428 0.526662 CCTCCCTCACACACTACGAC 59.473 60.000 0.00 0.00 0.00 4.34
3947 4429 0.402887 TCCTCCCTCACACACTACGA 59.597 55.000 0.00 0.00 0.00 3.43
3948 4430 1.202582 CTTCCTCCCTCACACACTACG 59.797 57.143 0.00 0.00 0.00 3.51
3950 4432 1.267121 GCTTCCTCCCTCACACACTA 58.733 55.000 0.00 0.00 0.00 2.74
3951 4433 1.821061 CGCTTCCTCCCTCACACACT 61.821 60.000 0.00 0.00 0.00 3.55
3955 4437 2.636412 CGACGCTTCCTCCCTCACA 61.636 63.158 0.00 0.00 0.00 3.58
3971 4453 2.178876 TTTCTTCCTCGCCATGCCGA 62.179 55.000 0.00 0.00 35.68 5.54
3990 4482 1.873486 GCTTCCAATGGCTGCGTTTTT 60.873 47.619 0.00 0.00 0.00 1.94
4008 4500 0.600255 CGTTCCAGTCGACTTTGGCT 60.600 55.000 17.26 0.00 34.38 4.75
4016 4508 5.293814 TGAAAACATTTTACGTTCCAGTCGA 59.706 36.000 0.00 0.00 0.00 4.20
4018 4510 5.398416 GCTGAAAACATTTTACGTTCCAGTC 59.602 40.000 0.00 0.00 0.00 3.51
4019 4511 5.067283 AGCTGAAAACATTTTACGTTCCAGT 59.933 36.000 0.00 0.00 0.00 4.00
4023 4515 5.854866 GGGTAGCTGAAAACATTTTACGTTC 59.145 40.000 0.00 0.00 0.00 3.95
4056 4548 5.025453 AGGAATTGTGTAAATGGGATTGCT 58.975 37.500 0.00 0.00 0.00 3.91
4084 4677 4.036262 GGTTATGTTTGGAGCGCATCAATA 59.964 41.667 11.47 6.44 0.00 1.90
4088 4681 1.065551 GGGTTATGTTTGGAGCGCATC 59.934 52.381 11.47 4.01 0.00 3.91
4104 4697 2.748209 ACCAGTGTTGCTTAAGGGTT 57.252 45.000 4.29 0.00 0.00 4.11
4105 4698 2.748209 AACCAGTGTTGCTTAAGGGT 57.252 45.000 4.29 0.00 32.13 4.34
4127 4720 1.377987 CGCCGGAATTCCCTTTGGA 60.378 57.895 19.01 0.00 39.54 3.53
4130 4723 2.340328 GCACGCCGGAATTCCCTTT 61.340 57.895 19.01 0.00 0.00 3.11
4149 4743 3.710209 AGTGCTGCTTAACTGGAATCT 57.290 42.857 0.00 0.00 0.00 2.40
4166 4760 6.071952 ACCCTCACTTATGTTTTGCAATAGTG 60.072 38.462 0.00 7.79 40.69 2.74
4167 4761 6.010219 ACCCTCACTTATGTTTTGCAATAGT 58.990 36.000 0.00 0.00 0.00 2.12
4168 4762 6.515272 ACCCTCACTTATGTTTTGCAATAG 57.485 37.500 0.00 0.00 0.00 1.73
4171 4765 5.594725 TGTTACCCTCACTTATGTTTTGCAA 59.405 36.000 0.00 0.00 0.00 4.08
4173 4767 5.009210 TGTGTTACCCTCACTTATGTTTTGC 59.991 40.000 0.00 0.00 36.83 3.68
4174 4768 6.485313 TCTGTGTTACCCTCACTTATGTTTTG 59.515 38.462 0.00 0.00 36.83 2.44
4177 4771 5.818678 TCTGTGTTACCCTCACTTATGTT 57.181 39.130 0.00 0.00 36.83 2.71
4180 4774 6.374417 ACATTCTGTGTTACCCTCACTTAT 57.626 37.500 0.00 0.00 38.01 1.73
4181 4775 5.818678 ACATTCTGTGTTACCCTCACTTA 57.181 39.130 0.00 0.00 38.01 2.24
4182 4776 4.706842 ACATTCTGTGTTACCCTCACTT 57.293 40.909 0.00 0.00 38.01 3.16
4211 4850 6.751514 AAACCTGGTTTTGGCTTTTTAAAG 57.248 33.333 18.84 0.00 34.20 1.85
4296 4939 9.232473 GTGGAATCTCTAAAAGGACTTGTATTT 57.768 33.333 0.00 0.00 0.00 1.40
4297 4940 8.606830 AGTGGAATCTCTAAAAGGACTTGTATT 58.393 33.333 0.00 0.00 0.00 1.89
4298 4941 8.152023 AGTGGAATCTCTAAAAGGACTTGTAT 57.848 34.615 0.00 0.00 0.00 2.29
4299 4942 7.554959 AGTGGAATCTCTAAAAGGACTTGTA 57.445 36.000 0.00 0.00 0.00 2.41
4300 4943 6.441088 AGTGGAATCTCTAAAAGGACTTGT 57.559 37.500 0.00 0.00 0.00 3.16
4325 4968 9.961265 CATACCGAATGTAGAATGTAGTCTTTA 57.039 33.333 0.00 0.00 31.61 1.85
4326 4969 8.873215 CATACCGAATGTAGAATGTAGTCTTT 57.127 34.615 0.00 0.00 31.61 2.52
4341 4984 3.123804 GCTGTAGACCACATACCGAATG 58.876 50.000 0.00 0.00 41.74 2.67
4342 4985 3.031736 AGCTGTAGACCACATACCGAAT 58.968 45.455 0.00 0.00 36.29 3.34
4343 4986 2.453521 AGCTGTAGACCACATACCGAA 58.546 47.619 0.00 0.00 36.29 4.30
4344 4987 2.139323 AGCTGTAGACCACATACCGA 57.861 50.000 0.00 0.00 36.29 4.69
4345 4988 2.094182 ACAAGCTGTAGACCACATACCG 60.094 50.000 0.00 0.00 36.29 4.02
4346 4989 3.611766 ACAAGCTGTAGACCACATACC 57.388 47.619 0.00 0.00 36.29 2.73
4357 5000 8.130671 ACCTAAATGTAAGTCTACAAGCTGTA 57.869 34.615 0.00 0.00 41.36 2.74
4358 5001 7.005709 ACCTAAATGTAAGTCTACAAGCTGT 57.994 36.000 0.00 0.00 41.36 4.40
4359 5002 7.201444 CGAACCTAAATGTAAGTCTACAAGCTG 60.201 40.741 0.00 0.00 41.36 4.24
4360 5003 6.812160 CGAACCTAAATGTAAGTCTACAAGCT 59.188 38.462 0.00 0.00 41.36 3.74
4361 5004 6.035758 CCGAACCTAAATGTAAGTCTACAAGC 59.964 42.308 0.00 0.00 41.36 4.01
4362 5005 7.318141 TCCGAACCTAAATGTAAGTCTACAAG 58.682 38.462 0.00 0.00 41.36 3.16
4363 5006 7.177216 TCTCCGAACCTAAATGTAAGTCTACAA 59.823 37.037 0.00 0.00 41.36 2.41
4364 5007 6.660521 TCTCCGAACCTAAATGTAAGTCTACA 59.339 38.462 0.00 0.00 42.22 2.74
4365 5008 7.066766 TCTCTCCGAACCTAAATGTAAGTCTAC 59.933 40.741 0.00 0.00 0.00 2.59
4366 5009 7.114754 TCTCTCCGAACCTAAATGTAAGTCTA 58.885 38.462 0.00 0.00 0.00 2.59
4367 5010 5.950549 TCTCTCCGAACCTAAATGTAAGTCT 59.049 40.000 0.00 0.00 0.00 3.24
4368 5011 6.127675 ACTCTCTCCGAACCTAAATGTAAGTC 60.128 42.308 0.00 0.00 0.00 3.01
4369 5012 5.715753 ACTCTCTCCGAACCTAAATGTAAGT 59.284 40.000 0.00 0.00 0.00 2.24
4370 5013 6.210287 ACTCTCTCCGAACCTAAATGTAAG 57.790 41.667 0.00 0.00 0.00 2.34
4371 5014 6.888632 AGTACTCTCTCCGAACCTAAATGTAA 59.111 38.462 0.00 0.00 0.00 2.41
4372 5015 6.421485 AGTACTCTCTCCGAACCTAAATGTA 58.579 40.000 0.00 0.00 0.00 2.29
4373 5016 5.262804 AGTACTCTCTCCGAACCTAAATGT 58.737 41.667 0.00 0.00 0.00 2.71
4374 5017 5.838531 AGTACTCTCTCCGAACCTAAATG 57.161 43.478 0.00 0.00 0.00 2.32
4375 5018 6.063404 CCTAGTACTCTCTCCGAACCTAAAT 58.937 44.000 0.00 0.00 0.00 1.40
4376 5019 5.435291 CCTAGTACTCTCTCCGAACCTAAA 58.565 45.833 0.00 0.00 0.00 1.85
4377 5020 4.685575 GCCTAGTACTCTCTCCGAACCTAA 60.686 50.000 0.00 0.00 0.00 2.69
4378 5021 3.181456 GCCTAGTACTCTCTCCGAACCTA 60.181 52.174 0.00 0.00 0.00 3.08
4379 5022 2.421811 GCCTAGTACTCTCTCCGAACCT 60.422 54.545 0.00 0.00 0.00 3.50
4380 5023 1.948834 GCCTAGTACTCTCTCCGAACC 59.051 57.143 0.00 0.00 0.00 3.62
4381 5024 1.948834 GGCCTAGTACTCTCTCCGAAC 59.051 57.143 0.00 0.00 0.00 3.95
4382 5025 1.133853 GGGCCTAGTACTCTCTCCGAA 60.134 57.143 0.84 0.00 0.00 4.30
4383 5026 0.473326 GGGCCTAGTACTCTCTCCGA 59.527 60.000 0.84 0.00 0.00 4.55
4384 5027 0.183014 TGGGCCTAGTACTCTCTCCG 59.817 60.000 4.53 0.00 0.00 4.63
4385 5028 1.215924 ACTGGGCCTAGTACTCTCTCC 59.784 57.143 21.92 0.00 0.00 3.71
4386 5029 2.740506 ACTGGGCCTAGTACTCTCTC 57.259 55.000 21.92 0.00 0.00 3.20
4387 5030 2.583566 AGAACTGGGCCTAGTACTCTCT 59.416 50.000 23.55 17.99 0.00 3.10
4388 5031 3.021177 AGAACTGGGCCTAGTACTCTC 57.979 52.381 23.55 15.92 0.00 3.20
4389 5032 3.476485 AAGAACTGGGCCTAGTACTCT 57.524 47.619 23.55 19.10 0.00 3.24
4390 5033 4.279982 AGTAAGAACTGGGCCTAGTACTC 58.720 47.826 23.55 17.04 33.57 2.59
4391 5034 4.334208 AGTAAGAACTGGGCCTAGTACT 57.666 45.455 23.55 18.55 33.57 2.73
4392 5035 4.583907 CCTAGTAAGAACTGGGCCTAGTAC 59.416 50.000 23.55 16.49 46.10 2.73
4393 5036 4.801164 CCTAGTAAGAACTGGGCCTAGTA 58.199 47.826 23.55 3.39 46.10 1.82
4394 5037 3.644335 CCTAGTAAGAACTGGGCCTAGT 58.356 50.000 17.38 17.38 46.10 2.57
4401 5044 3.644335 ACTAGGGCCTAGTAAGAACTGG 58.356 50.000 38.52 14.95 44.35 4.00
4402 5045 5.187186 TGAAACTAGGGCCTAGTAAGAACTG 59.813 44.000 39.11 16.44 45.28 3.16
4403 5046 5.339477 TGAAACTAGGGCCTAGTAAGAACT 58.661 41.667 39.11 23.70 45.28 3.01
4404 5047 5.672421 TGAAACTAGGGCCTAGTAAGAAC 57.328 43.478 39.11 27.38 45.28 3.01
4405 5048 5.130477 CCATGAAACTAGGGCCTAGTAAGAA 59.870 44.000 39.11 26.56 45.28 2.52
4406 5049 4.654262 CCATGAAACTAGGGCCTAGTAAGA 59.346 45.833 39.11 26.92 45.28 2.10
4407 5050 4.743955 GCCATGAAACTAGGGCCTAGTAAG 60.744 50.000 39.11 26.51 45.28 2.34
4408 5051 3.135895 GCCATGAAACTAGGGCCTAGTAA 59.864 47.826 39.11 28.69 45.28 2.24
4409 5052 2.704065 GCCATGAAACTAGGGCCTAGTA 59.296 50.000 39.11 27.26 45.28 1.82
4411 5054 2.262423 GCCATGAAACTAGGGCCTAG 57.738 55.000 33.93 33.93 40.55 3.02
4415 5058 1.340017 TGTCAGCCATGAAACTAGGGC 60.340 52.381 0.00 0.00 46.77 5.19
4416 5059 2.787473 TGTCAGCCATGAAACTAGGG 57.213 50.000 0.00 0.00 37.14 3.53
4417 5060 6.949352 AATTATGTCAGCCATGAAACTAGG 57.051 37.500 0.00 0.00 37.14 3.02
4453 5117 5.827797 TCAAGCAATGGTGAGAAGTACTTTT 59.172 36.000 10.02 3.52 0.00 2.27
4486 5163 8.668510 ATTATGATATGCTTGATACCGAATCC 57.331 34.615 0.00 0.00 33.22 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.