Multiple sequence alignment - TraesCS7B01G307900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G307900 chr7B 100.000 2813 0 0 1 2813 551930171 551932983 0.000000e+00 5195.0
1 TraesCS7B01G307900 chr7B 84.742 1029 112 21 1087 2108 552133982 552132992 0.000000e+00 989.0
2 TraesCS7B01G307900 chr7B 82.828 99 9 6 985 1081 552140358 552140266 6.460000e-12 82.4
3 TraesCS7B01G307900 chr7D 91.377 1902 73 30 296 2154 518622995 518624848 0.000000e+00 2519.0
4 TraesCS7B01G307900 chr7D 84.471 747 89 17 918 1660 519148591 519147868 0.000000e+00 712.0
5 TraesCS7B01G307900 chr7D 88.469 529 49 3 1445 1972 518879071 518878554 1.840000e-176 628.0
6 TraesCS7B01G307900 chr7D 91.809 293 22 2 2240 2532 518629299 518629589 9.380000e-110 407.0
7 TraesCS7B01G307900 chr7D 81.092 476 48 12 1696 2151 519147861 519147408 2.680000e-90 342.0
8 TraesCS7B01G307900 chr7D 80.338 473 65 17 980 1449 518884911 518884464 1.610000e-87 333.0
9 TraesCS7B01G307900 chr7A 88.258 1533 69 49 647 2098 593445818 593447320 0.000000e+00 1731.0
10 TraesCS7B01G307900 chr7A 84.293 1216 127 30 1050 2241 594599745 594598570 0.000000e+00 1129.0
11 TraesCS7B01G307900 chr7A 83.475 236 21 14 2240 2474 593447474 593447692 1.320000e-48 204.0
12 TraesCS7B01G307900 chr7A 82.787 122 11 4 2127 2241 593447321 593447439 1.780000e-17 100.0
13 TraesCS7B01G307900 chr4A 99.656 291 1 0 2523 2813 740217924 740217634 1.480000e-147 532.0
14 TraesCS7B01G307900 chr4A 99.313 291 2 0 2523 2813 729294202 729294492 6.900000e-146 527.0
15 TraesCS7B01G307900 chr2B 99.315 292 2 0 2522 2813 77770843 77770552 1.920000e-146 529.0
16 TraesCS7B01G307900 chr2B 98.625 291 4 0 2523 2813 25362877 25362587 1.490000e-142 516.0
17 TraesCS7B01G307900 chr2A 98.983 295 3 0 2519 2813 755847952 755847658 1.920000e-146 529.0
18 TraesCS7B01G307900 chr5A 99.313 291 2 0 2523 2813 554204514 554204804 6.900000e-146 527.0
19 TraesCS7B01G307900 chr4B 99.313 291 2 0 2523 2813 481232405 481232115 6.900000e-146 527.0
20 TraesCS7B01G307900 chr3A 98.976 293 3 0 2521 2813 208090711 208091003 2.480000e-145 525.0
21 TraesCS7B01G307900 chr1B 98.976 293 3 0 2521 2813 626652024 626652316 2.480000e-145 525.0
22 TraesCS7B01G307900 chr6A 75.503 298 55 11 4 286 259777833 259778127 2.270000e-26 130.0
23 TraesCS7B01G307900 chr1D 93.103 58 4 0 229 286 365993728 365993785 4.990000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G307900 chr7B 551930171 551932983 2812 False 5195.000000 5195 100.0000 1 2813 1 chr7B.!!$F1 2812
1 TraesCS7B01G307900 chr7B 552132992 552133982 990 True 989.000000 989 84.7420 1087 2108 1 chr7B.!!$R1 1021
2 TraesCS7B01G307900 chr7D 518622995 518624848 1853 False 2519.000000 2519 91.3770 296 2154 1 chr7D.!!$F1 1858
3 TraesCS7B01G307900 chr7D 518878554 518879071 517 True 628.000000 628 88.4690 1445 1972 1 chr7D.!!$R1 527
4 TraesCS7B01G307900 chr7D 519147408 519148591 1183 True 527.000000 712 82.7815 918 2151 2 chr7D.!!$R3 1233
5 TraesCS7B01G307900 chr7A 594598570 594599745 1175 True 1129.000000 1129 84.2930 1050 2241 1 chr7A.!!$R1 1191
6 TraesCS7B01G307900 chr7A 593445818 593447692 1874 False 678.333333 1731 84.8400 647 2474 3 chr7A.!!$F1 1827

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
187 188 0.035820 TTCGCCGTGGGAGCTTTATT 60.036 50.0 0.0 0.0 0.00 1.40 F
287 288 0.039074 CGCCGCTTCTCCTAATCGAT 60.039 55.0 0.0 0.0 0.00 3.59 F
434 445 0.247185 CGTCCATGCTGCCCATTTTT 59.753 50.0 0.0 0.0 29.71 1.94 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1020 1056 0.914417 AGGAAGGAAATGGGAGCCGA 60.914 55.0 0.00 0.00 0.0 5.54 R
1308 1409 1.112113 AGATGAGGTACACGGCGAAT 58.888 50.0 16.62 2.87 0.0 3.34 R
2301 2496 0.976641 TTCAGTCAGCTCAACCGGAT 59.023 50.0 9.46 0.00 0.0 4.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.774354 ACATTTTTCTGCATGTTCATGAAC 57.226 33.333 28.10 28.10 41.50 3.18
24 25 6.518493 ACATTTTTCTGCATGTTCATGAACT 58.482 32.000 32.57 18.91 41.67 3.01
25 26 6.987992 ACATTTTTCTGCATGTTCATGAACTT 59.012 30.769 32.57 25.75 41.67 2.66
26 27 7.496591 ACATTTTTCTGCATGTTCATGAACTTT 59.503 29.630 32.57 20.45 41.67 2.66
27 28 7.846644 TTTTTCTGCATGTTCATGAACTTTT 57.153 28.000 32.57 18.29 41.67 2.27
28 29 7.846644 TTTTCTGCATGTTCATGAACTTTTT 57.153 28.000 32.57 16.16 41.67 1.94
61 62 9.703892 TTTGTGAAGTTTCATTTCTTTGAAAGA 57.296 25.926 3.02 3.02 44.06 2.52
62 63 9.703892 TTGTGAAGTTTCATTTCTTTGAAAGAA 57.296 25.926 15.81 15.81 44.06 2.52
76 77 7.298122 TCTTTGAAAGAAAATCGTGTATGAGC 58.702 34.615 4.94 0.00 33.83 4.26
77 78 6.552859 TTGAAAGAAAATCGTGTATGAGCA 57.447 33.333 0.00 0.00 0.00 4.26
78 79 6.169419 TGAAAGAAAATCGTGTATGAGCAG 57.831 37.500 0.00 0.00 0.00 4.24
79 80 4.606457 AAGAAAATCGTGTATGAGCAGC 57.394 40.909 0.00 0.00 0.00 5.25
80 81 3.866651 AGAAAATCGTGTATGAGCAGCT 58.133 40.909 0.00 0.00 0.00 4.24
81 82 5.011090 AGAAAATCGTGTATGAGCAGCTA 57.989 39.130 0.00 0.00 0.00 3.32
82 83 4.806247 AGAAAATCGTGTATGAGCAGCTAC 59.194 41.667 0.00 0.00 0.00 3.58
83 84 2.407521 ATCGTGTATGAGCAGCTACG 57.592 50.000 8.15 8.15 0.00 3.51
84 85 1.375551 TCGTGTATGAGCAGCTACGA 58.624 50.000 12.36 12.36 38.10 3.43
85 86 1.947456 TCGTGTATGAGCAGCTACGAT 59.053 47.619 12.36 0.51 35.88 3.73
86 87 2.047040 CGTGTATGAGCAGCTACGATG 58.953 52.381 8.70 0.00 33.78 3.84
87 88 2.398498 GTGTATGAGCAGCTACGATGG 58.602 52.381 0.00 0.00 0.00 3.51
88 89 2.031870 TGTATGAGCAGCTACGATGGT 58.968 47.619 0.00 0.00 0.00 3.55
89 90 2.430694 TGTATGAGCAGCTACGATGGTT 59.569 45.455 0.00 0.00 0.00 3.67
90 91 2.698855 ATGAGCAGCTACGATGGTTT 57.301 45.000 0.00 0.00 0.00 3.27
91 92 3.819564 ATGAGCAGCTACGATGGTTTA 57.180 42.857 0.00 0.00 0.00 2.01
92 93 3.819564 TGAGCAGCTACGATGGTTTAT 57.180 42.857 0.00 0.00 0.00 1.40
93 94 4.929819 TGAGCAGCTACGATGGTTTATA 57.070 40.909 0.00 0.00 0.00 0.98
94 95 5.270893 TGAGCAGCTACGATGGTTTATAA 57.729 39.130 0.00 0.00 0.00 0.98
95 96 5.666462 TGAGCAGCTACGATGGTTTATAAA 58.334 37.500 0.00 0.00 0.00 1.40
96 97 5.753438 TGAGCAGCTACGATGGTTTATAAAG 59.247 40.000 0.00 0.00 0.00 1.85
97 98 5.671493 AGCAGCTACGATGGTTTATAAAGT 58.329 37.500 0.00 0.00 0.00 2.66
98 99 5.523916 AGCAGCTACGATGGTTTATAAAGTG 59.476 40.000 0.00 0.00 0.00 3.16
99 100 5.293569 GCAGCTACGATGGTTTATAAAGTGT 59.706 40.000 0.00 0.00 0.00 3.55
100 101 6.183360 GCAGCTACGATGGTTTATAAAGTGTT 60.183 38.462 0.00 0.00 0.00 3.32
101 102 7.010738 GCAGCTACGATGGTTTATAAAGTGTTA 59.989 37.037 0.00 0.00 0.00 2.41
102 103 8.540492 CAGCTACGATGGTTTATAAAGTGTTAG 58.460 37.037 0.00 0.00 0.00 2.34
103 104 7.224167 AGCTACGATGGTTTATAAAGTGTTAGC 59.776 37.037 0.00 6.73 0.00 3.09
104 105 6.340537 ACGATGGTTTATAAAGTGTTAGCG 57.659 37.500 0.00 1.49 0.00 4.26
105 106 5.195379 CGATGGTTTATAAAGTGTTAGCGC 58.805 41.667 0.00 0.00 0.00 5.92
106 107 5.006358 CGATGGTTTATAAAGTGTTAGCGCT 59.994 40.000 17.26 17.26 36.97 5.92
107 108 5.539582 TGGTTTATAAAGTGTTAGCGCTG 57.460 39.130 22.90 0.00 35.34 5.18
108 109 4.393680 TGGTTTATAAAGTGTTAGCGCTGG 59.606 41.667 22.90 0.00 35.34 4.85
109 110 4.632688 GGTTTATAAAGTGTTAGCGCTGGA 59.367 41.667 22.90 5.56 35.34 3.86
110 111 5.296035 GGTTTATAAAGTGTTAGCGCTGGAT 59.704 40.000 22.90 0.00 35.34 3.41
111 112 6.183360 GGTTTATAAAGTGTTAGCGCTGGATT 60.183 38.462 22.90 8.89 35.34 3.01
112 113 6.995511 TTATAAAGTGTTAGCGCTGGATTT 57.004 33.333 22.90 15.29 35.34 2.17
113 114 5.897377 ATAAAGTGTTAGCGCTGGATTTT 57.103 34.783 22.90 15.58 35.34 1.82
114 115 3.559238 AAGTGTTAGCGCTGGATTTTG 57.441 42.857 22.90 0.00 35.34 2.44
115 116 2.504367 AGTGTTAGCGCTGGATTTTGT 58.496 42.857 22.90 0.00 33.62 2.83
116 117 2.484264 AGTGTTAGCGCTGGATTTTGTC 59.516 45.455 22.90 0.76 33.62 3.18
117 118 2.225491 GTGTTAGCGCTGGATTTTGTCA 59.775 45.455 22.90 2.91 0.00 3.58
118 119 2.225491 TGTTAGCGCTGGATTTTGTCAC 59.775 45.455 22.90 1.56 0.00 3.67
119 120 2.472695 TAGCGCTGGATTTTGTCACT 57.527 45.000 22.90 0.00 0.00 3.41
120 121 1.609208 AGCGCTGGATTTTGTCACTT 58.391 45.000 10.39 0.00 0.00 3.16
121 122 1.267806 AGCGCTGGATTTTGTCACTTG 59.732 47.619 10.39 0.00 0.00 3.16
122 123 1.689959 CGCTGGATTTTGTCACTTGC 58.310 50.000 0.00 0.00 0.00 4.01
123 124 1.001487 CGCTGGATTTTGTCACTTGCA 60.001 47.619 0.00 0.00 0.00 4.08
124 125 2.543445 CGCTGGATTTTGTCACTTGCAA 60.543 45.455 0.00 0.00 0.00 4.08
125 126 2.796593 GCTGGATTTTGTCACTTGCAAC 59.203 45.455 0.00 0.00 0.00 4.17
126 127 3.383761 CTGGATTTTGTCACTTGCAACC 58.616 45.455 0.00 0.00 0.00 3.77
127 128 2.762887 TGGATTTTGTCACTTGCAACCA 59.237 40.909 0.00 0.00 0.00 3.67
128 129 3.123050 GGATTTTGTCACTTGCAACCAC 58.877 45.455 0.00 0.00 0.00 4.16
129 130 3.430098 GGATTTTGTCACTTGCAACCACA 60.430 43.478 0.00 0.00 0.00 4.17
130 131 3.883830 TTTTGTCACTTGCAACCACAT 57.116 38.095 0.00 0.00 0.00 3.21
131 132 2.867287 TTGTCACTTGCAACCACATG 57.133 45.000 0.00 0.00 0.00 3.21
132 133 0.385029 TGTCACTTGCAACCACATGC 59.615 50.000 0.00 0.00 46.58 4.06
133 134 0.318955 GTCACTTGCAACCACATGCC 60.319 55.000 0.00 0.00 45.83 4.40
134 135 1.005867 CACTTGCAACCACATGCCC 60.006 57.895 0.00 0.00 45.83 5.36
135 136 1.152483 ACTTGCAACCACATGCCCT 60.152 52.632 0.00 0.00 45.83 5.19
136 137 0.112218 ACTTGCAACCACATGCCCTA 59.888 50.000 0.00 0.00 45.83 3.53
137 138 0.813184 CTTGCAACCACATGCCCTAG 59.187 55.000 0.00 0.00 45.83 3.02
138 139 0.112218 TTGCAACCACATGCCCTAGT 59.888 50.000 0.00 0.00 45.83 2.57
139 140 0.608856 TGCAACCACATGCCCTAGTG 60.609 55.000 0.00 0.00 45.83 2.74
145 146 1.668419 CACATGCCCTAGTGGTTAGC 58.332 55.000 0.00 0.00 36.04 3.09
146 147 1.065491 CACATGCCCTAGTGGTTAGCA 60.065 52.381 0.00 0.00 37.94 3.49
147 148 1.633432 ACATGCCCTAGTGGTTAGCAA 59.367 47.619 0.00 0.00 36.95 3.91
148 149 2.017049 CATGCCCTAGTGGTTAGCAAC 58.983 52.381 0.00 0.00 36.95 4.17
149 150 1.358152 TGCCCTAGTGGTTAGCAACT 58.642 50.000 0.00 0.00 36.04 3.16
150 151 1.702957 TGCCCTAGTGGTTAGCAACTT 59.297 47.619 0.00 0.00 36.04 2.66
151 152 2.084546 GCCCTAGTGGTTAGCAACTTG 58.915 52.381 0.00 0.00 36.04 3.16
152 153 2.552373 GCCCTAGTGGTTAGCAACTTGT 60.552 50.000 0.00 0.00 36.04 3.16
153 154 3.307199 GCCCTAGTGGTTAGCAACTTGTA 60.307 47.826 0.00 0.00 36.04 2.41
154 155 4.504858 CCCTAGTGGTTAGCAACTTGTAG 58.495 47.826 0.00 0.00 30.15 2.74
155 156 4.504858 CCTAGTGGTTAGCAACTTGTAGG 58.495 47.826 0.00 0.00 30.15 3.18
156 157 3.418684 AGTGGTTAGCAACTTGTAGGG 57.581 47.619 0.00 0.00 0.00 3.53
157 158 1.810755 GTGGTTAGCAACTTGTAGGGC 59.189 52.381 0.00 0.00 0.00 5.19
158 159 1.084289 GGTTAGCAACTTGTAGGGCG 58.916 55.000 0.00 0.00 0.00 6.13
159 160 0.446616 GTTAGCAACTTGTAGGGCGC 59.553 55.000 0.00 0.00 0.00 6.53
160 161 1.017177 TTAGCAACTTGTAGGGCGCG 61.017 55.000 0.00 0.00 0.00 6.86
161 162 1.879737 TAGCAACTTGTAGGGCGCGA 61.880 55.000 12.10 0.00 0.00 5.87
162 163 2.740714 GCAACTTGTAGGGCGCGAG 61.741 63.158 12.10 0.00 0.00 5.03
163 164 1.374252 CAACTTGTAGGGCGCGAGT 60.374 57.895 12.10 0.00 32.31 4.18
164 165 0.949105 CAACTTGTAGGGCGCGAGTT 60.949 55.000 12.10 5.67 40.20 3.01
165 166 0.669625 AACTTGTAGGGCGCGAGTTC 60.670 55.000 12.10 0.00 36.19 3.01
166 167 2.126228 TTGTAGGGCGCGAGTTCG 60.126 61.111 12.10 0.00 43.27 3.95
167 168 2.537792 CTTGTAGGGCGCGAGTTCGA 62.538 60.000 12.10 0.00 43.02 3.71
168 169 1.940883 TTGTAGGGCGCGAGTTCGAT 61.941 55.000 12.10 0.00 43.02 3.59
169 170 1.226888 GTAGGGCGCGAGTTCGATT 60.227 57.895 12.10 0.00 43.02 3.34
170 171 1.065273 TAGGGCGCGAGTTCGATTC 59.935 57.895 12.10 0.00 43.02 2.52
171 172 2.657484 TAGGGCGCGAGTTCGATTCG 62.657 60.000 12.10 13.61 43.02 3.34
176 177 2.987593 CGAGTTCGATTCGCCGTG 59.012 61.111 0.00 0.00 43.02 4.94
177 178 2.505498 CGAGTTCGATTCGCCGTGG 61.505 63.158 0.00 0.00 43.02 4.94
178 179 2.125673 AGTTCGATTCGCCGTGGG 60.126 61.111 0.00 0.00 0.00 4.61
179 180 2.125832 GTTCGATTCGCCGTGGGA 60.126 61.111 0.00 0.00 0.00 4.37
180 181 2.165301 GTTCGATTCGCCGTGGGAG 61.165 63.158 0.00 0.00 0.00 4.30
181 182 4.508128 TCGATTCGCCGTGGGAGC 62.508 66.667 0.00 0.00 0.00 4.70
182 183 4.514577 CGATTCGCCGTGGGAGCT 62.515 66.667 0.00 0.00 0.00 4.09
183 184 2.125106 GATTCGCCGTGGGAGCTT 60.125 61.111 0.00 0.00 0.00 3.74
184 185 1.745489 GATTCGCCGTGGGAGCTTT 60.745 57.895 0.00 0.00 0.00 3.51
185 186 0.461339 GATTCGCCGTGGGAGCTTTA 60.461 55.000 0.00 0.00 0.00 1.85
186 187 0.180406 ATTCGCCGTGGGAGCTTTAT 59.820 50.000 0.00 0.00 0.00 1.40
187 188 0.035820 TTCGCCGTGGGAGCTTTATT 60.036 50.000 0.00 0.00 0.00 1.40
188 189 0.035820 TCGCCGTGGGAGCTTTATTT 60.036 50.000 0.00 0.00 0.00 1.40
189 190 0.808755 CGCCGTGGGAGCTTTATTTT 59.191 50.000 0.00 0.00 0.00 1.82
190 191 1.201414 CGCCGTGGGAGCTTTATTTTT 59.799 47.619 0.00 0.00 0.00 1.94
214 215 8.454293 TTTTATTCTTTTCGCGCATTTTATGA 57.546 26.923 8.75 0.00 0.00 2.15
215 216 5.932021 ATTCTTTTCGCGCATTTTATGAC 57.068 34.783 8.75 0.00 0.00 3.06
216 217 3.753842 TCTTTTCGCGCATTTTATGACC 58.246 40.909 8.75 0.00 0.00 4.02
217 218 3.189495 TCTTTTCGCGCATTTTATGACCA 59.811 39.130 8.75 0.00 0.00 4.02
218 219 3.773860 TTTCGCGCATTTTATGACCAT 57.226 38.095 8.75 0.00 0.00 3.55
219 220 3.773860 TTCGCGCATTTTATGACCATT 57.226 38.095 8.75 0.00 0.00 3.16
220 221 3.773860 TCGCGCATTTTATGACCATTT 57.226 38.095 8.75 0.00 0.00 2.32
221 222 4.103365 TCGCGCATTTTATGACCATTTT 57.897 36.364 8.75 0.00 0.00 1.82
222 223 3.856521 TCGCGCATTTTATGACCATTTTG 59.143 39.130 8.75 0.00 0.00 2.44
223 224 3.611986 CGCGCATTTTATGACCATTTTGT 59.388 39.130 8.75 0.00 0.00 2.83
224 225 4.490639 CGCGCATTTTATGACCATTTTGTG 60.491 41.667 8.75 0.00 0.00 3.33
225 226 4.624882 GCGCATTTTATGACCATTTTGTGA 59.375 37.500 0.30 0.00 0.00 3.58
226 227 5.444481 GCGCATTTTATGACCATTTTGTGAC 60.444 40.000 0.30 0.00 0.00 3.67
227 228 5.220006 CGCATTTTATGACCATTTTGTGACG 60.220 40.000 0.00 0.00 0.00 4.35
228 229 5.062058 GCATTTTATGACCATTTTGTGACGG 59.938 40.000 0.00 0.00 0.00 4.79
229 230 5.776173 TTTTATGACCATTTTGTGACGGT 57.224 34.783 0.00 0.00 0.00 4.83
230 231 4.757799 TTATGACCATTTTGTGACGGTG 57.242 40.909 0.00 0.00 0.00 4.94
231 232 0.665835 TGACCATTTTGTGACGGTGC 59.334 50.000 0.00 0.00 0.00 5.01
232 233 0.039527 GACCATTTTGTGACGGTGCC 60.040 55.000 0.00 0.00 0.00 5.01
233 234 1.288752 CCATTTTGTGACGGTGCCC 59.711 57.895 0.00 0.00 0.00 5.36
234 235 1.288752 CATTTTGTGACGGTGCCCC 59.711 57.895 0.00 0.00 0.00 5.80
235 236 1.152830 ATTTTGTGACGGTGCCCCT 59.847 52.632 0.00 0.00 0.00 4.79
236 237 0.469144 ATTTTGTGACGGTGCCCCTT 60.469 50.000 0.00 0.00 0.00 3.95
237 238 1.104577 TTTTGTGACGGTGCCCCTTC 61.105 55.000 0.00 0.00 0.00 3.46
238 239 3.818121 TTGTGACGGTGCCCCTTCG 62.818 63.158 0.00 0.00 31.68 3.79
260 261 4.474846 CCGGCCCAATTCGCGTTG 62.475 66.667 5.77 3.93 0.00 4.10
261 262 3.732892 CGGCCCAATTCGCGTTGT 61.733 61.111 5.77 0.00 0.00 3.32
262 263 2.392181 CGGCCCAATTCGCGTTGTA 61.392 57.895 5.77 0.00 0.00 2.41
263 264 1.427819 GGCCCAATTCGCGTTGTAG 59.572 57.895 5.77 0.00 0.00 2.74
264 265 1.226295 GCCCAATTCGCGTTGTAGC 60.226 57.895 5.77 6.01 0.00 3.58
281 282 3.889044 CGAGCGCCGCTTCTCCTA 61.889 66.667 15.07 0.00 39.88 2.94
282 283 2.494918 GAGCGCCGCTTCTCCTAA 59.505 61.111 15.07 0.00 39.88 2.69
283 284 1.068250 GAGCGCCGCTTCTCCTAAT 59.932 57.895 15.07 0.00 39.88 1.73
284 285 0.941936 GAGCGCCGCTTCTCCTAATC 60.942 60.000 15.07 0.00 39.88 1.75
285 286 2.303676 GCGCCGCTTCTCCTAATCG 61.304 63.158 0.00 0.00 0.00 3.34
286 287 1.359117 CGCCGCTTCTCCTAATCGA 59.641 57.895 0.00 0.00 0.00 3.59
287 288 0.039074 CGCCGCTTCTCCTAATCGAT 60.039 55.000 0.00 0.00 0.00 3.59
288 289 1.603172 CGCCGCTTCTCCTAATCGATT 60.603 52.381 16.15 16.15 0.00 3.34
289 290 2.351447 CGCCGCTTCTCCTAATCGATTA 60.351 50.000 16.69 16.69 0.00 1.75
290 291 3.246619 GCCGCTTCTCCTAATCGATTAG 58.753 50.000 30.22 30.22 39.50 1.73
300 301 2.436087 AATCGATTAGGAGCGCCCCG 62.436 60.000 9.39 4.42 34.03 5.73
303 304 2.762459 ATTAGGAGCGCCCCGTCA 60.762 61.111 2.29 0.00 34.66 4.35
387 395 7.009179 TCTTAGTGATCATTGTTGGACTTCT 57.991 36.000 0.00 0.00 0.00 2.85
403 411 0.678950 TTCTGATCGACTGGCACACA 59.321 50.000 0.00 0.00 0.00 3.72
404 412 0.897621 TCTGATCGACTGGCACACAT 59.102 50.000 0.00 0.00 0.00 3.21
434 445 0.247185 CGTCCATGCTGCCCATTTTT 59.753 50.000 0.00 0.00 29.71 1.94
490 501 3.910627 CTCCTTACCTATGTTATGGCCCT 59.089 47.826 0.00 0.00 0.00 5.19
539 550 3.004210 TGCTTCGCTGAATGTAGCAAAAA 59.996 39.130 0.00 0.00 43.87 1.94
545 556 6.718388 TCGCTGAATGTAGCAAAAATATCTG 58.282 36.000 0.00 0.00 43.87 2.90
549 560 7.430502 GCTGAATGTAGCAAAAATATCTGACAC 59.569 37.037 0.00 0.00 43.17 3.67
591 602 0.332972 AAGAATTGACCAGGAGGGCC 59.667 55.000 0.00 0.00 45.14 5.80
616 629 2.351244 CGGCAGCAGGTCTACCTCA 61.351 63.158 0.00 0.00 46.65 3.86
628 642 6.578023 CAGGTCTACCTCAAGGAGATTTTAG 58.422 44.000 2.30 0.00 46.65 1.85
645 659 1.234821 TAGCCTGTTCTTTGTTGCGG 58.765 50.000 0.00 0.00 0.00 5.69
657 671 1.310904 TGTTGCGGTTAGTGGGTTTC 58.689 50.000 0.00 0.00 0.00 2.78
745 760 3.498018 GCATTTCAAATTTGGTGACCCAC 59.502 43.478 17.90 0.00 41.67 4.61
799 814 7.174772 AGGTTTGAAATTTAATTTGTGATGGCC 59.825 33.333 7.72 0.00 31.47 5.36
810 825 0.615331 GTGATGGCCAGTTGAGAGGA 59.385 55.000 13.05 0.00 0.00 3.71
937 972 1.318576 AACTCAAAAAGGAGGCGTGG 58.681 50.000 0.00 0.00 39.27 4.94
1020 1056 3.307691 CCATGGATATGTACCGCTCCATT 60.308 47.826 5.56 2.51 44.21 3.16
1022 1058 2.029380 TGGATATGTACCGCTCCATTCG 60.029 50.000 3.89 0.00 32.92 3.34
1257 1358 1.003112 GTTGGTGTGGATGGCGGTA 60.003 57.895 0.00 0.00 0.00 4.02
1434 1535 4.436998 CAGGTCAGGGCCGACGTC 62.437 72.222 16.77 5.18 36.73 4.34
1998 2117 1.070134 TCTTATACAGCATCCCCGCAC 59.930 52.381 0.00 0.00 0.00 5.34
2089 2226 1.839424 AGCCAGCCTAATTTGTGGTC 58.161 50.000 0.00 0.00 32.20 4.02
2124 2269 8.407457 ACATATATTGCGTATGGAATAGTTCG 57.593 34.615 13.47 5.86 41.00 3.95
2158 2303 4.760204 CCATCTCCTTCCGTTTACAGTTTT 59.240 41.667 0.00 0.00 0.00 2.43
2198 2350 0.678950 TGAGATCGAGTTGTGGTGCA 59.321 50.000 0.00 0.00 0.00 4.57
2235 2394 4.212847 AGCACAGATTATTAAGATGCAGCG 59.787 41.667 0.00 0.00 34.03 5.18
2252 2447 2.802247 CAGCGCGATAATCCAATGAGAA 59.198 45.455 12.10 0.00 0.00 2.87
2284 2479 1.401905 GAAGCCATCACCGGAACATTC 59.598 52.381 9.46 0.00 0.00 2.67
2297 2492 4.556233 CGGAACATTCTGACTTGTGAGTA 58.444 43.478 0.00 0.00 35.88 2.59
2301 2496 3.324846 ACATTCTGACTTGTGAGTAGCCA 59.675 43.478 0.00 0.00 35.88 4.75
2307 2502 0.537188 CTTGTGAGTAGCCATCCGGT 59.463 55.000 0.00 0.00 33.28 5.28
2309 2504 0.249120 TGTGAGTAGCCATCCGGTTG 59.751 55.000 0.00 2.69 33.28 3.77
2316 2511 2.109126 GCCATCCGGTTGAGCTGAC 61.109 63.158 14.27 0.00 33.28 3.51
2326 2521 3.003689 CGGTTGAGCTGACTGAACAAATT 59.996 43.478 0.00 0.00 41.31 1.82
2335 2530 6.491403 AGCTGACTGAACAAATTAACCTGAAT 59.509 34.615 0.00 0.00 0.00 2.57
2337 2532 7.581213 TGACTGAACAAATTAACCTGAATGT 57.419 32.000 0.00 0.00 0.00 2.71
2338 2533 7.648142 TGACTGAACAAATTAACCTGAATGTC 58.352 34.615 0.00 0.00 0.00 3.06
2339 2534 7.284261 TGACTGAACAAATTAACCTGAATGTCA 59.716 33.333 0.00 0.00 0.00 3.58
2340 2535 8.181904 ACTGAACAAATTAACCTGAATGTCAT 57.818 30.769 0.00 0.00 0.00 3.06
2341 2536 9.295825 ACTGAACAAATTAACCTGAATGTCATA 57.704 29.630 0.00 0.00 0.00 2.15
2417 2612 2.652941 AGCATTGCCAATTTACCGTG 57.347 45.000 4.70 0.00 0.00 4.94
2433 2628 2.490165 GTGTAGCACGCTCCTCCTA 58.510 57.895 0.00 0.00 0.00 2.94
2436 2631 1.476891 TGTAGCACGCTCCTCCTAAAG 59.523 52.381 0.00 0.00 0.00 1.85
2437 2632 1.749634 GTAGCACGCTCCTCCTAAAGA 59.250 52.381 0.00 0.00 0.00 2.52
2438 2633 1.490574 AGCACGCTCCTCCTAAAGAT 58.509 50.000 0.00 0.00 0.00 2.40
2439 2634 1.410882 AGCACGCTCCTCCTAAAGATC 59.589 52.381 0.00 0.00 0.00 2.75
2443 2638 3.868077 CACGCTCCTCCTAAAGATCAAAG 59.132 47.826 0.00 0.00 0.00 2.77
2460 2655 2.149973 AAGGCACAATCTGAATCCCC 57.850 50.000 0.00 0.00 0.00 4.81
2464 2659 2.423947 GGCACAATCTGAATCCCCTGAT 60.424 50.000 0.00 0.00 0.00 2.90
2474 2669 3.118408 TGAATCCCCTGATGAAGTAACCG 60.118 47.826 0.00 0.00 0.00 4.44
2475 2670 1.946984 TCCCCTGATGAAGTAACCGT 58.053 50.000 0.00 0.00 0.00 4.83
2476 2671 3.104519 TCCCCTGATGAAGTAACCGTA 57.895 47.619 0.00 0.00 0.00 4.02
2477 2672 3.028850 TCCCCTGATGAAGTAACCGTAG 58.971 50.000 0.00 0.00 0.00 3.51
2478 2673 2.764572 CCCCTGATGAAGTAACCGTAGT 59.235 50.000 0.00 0.00 0.00 2.73
2479 2674 3.197116 CCCCTGATGAAGTAACCGTAGTT 59.803 47.826 0.00 0.00 40.15 2.24
2480 2675 4.403432 CCCCTGATGAAGTAACCGTAGTTA 59.597 45.833 0.00 0.00 37.42 2.24
2481 2676 5.105228 CCCCTGATGAAGTAACCGTAGTTAA 60.105 44.000 0.00 0.00 40.12 2.01
2482 2677 6.407752 CCCCTGATGAAGTAACCGTAGTTAAT 60.408 42.308 0.00 0.00 40.12 1.40
2483 2678 7.201938 CCCCTGATGAAGTAACCGTAGTTAATA 60.202 40.741 0.00 0.00 40.12 0.98
2484 2679 8.199449 CCCTGATGAAGTAACCGTAGTTAATAA 58.801 37.037 0.00 0.00 40.12 1.40
2485 2680 9.590451 CCTGATGAAGTAACCGTAGTTAATAAA 57.410 33.333 0.00 0.00 40.12 1.40
2487 2682 9.926158 TGATGAAGTAACCGTAGTTAATAAACA 57.074 29.630 0.00 0.00 40.12 2.83
2490 2685 9.369904 TGAAGTAACCGTAGTTAATAAACATCC 57.630 33.333 0.00 0.00 40.12 3.51
2491 2686 9.591792 GAAGTAACCGTAGTTAATAAACATCCT 57.408 33.333 0.00 0.00 40.12 3.24
2492 2687 8.937634 AGTAACCGTAGTTAATAAACATCCTG 57.062 34.615 0.00 0.00 40.12 3.86
2493 2688 7.983484 AGTAACCGTAGTTAATAAACATCCTGG 59.017 37.037 0.00 0.00 40.12 4.45
2494 2689 6.303903 ACCGTAGTTAATAAACATCCTGGT 57.696 37.500 0.00 0.00 38.12 4.00
2495 2690 6.110707 ACCGTAGTTAATAAACATCCTGGTG 58.889 40.000 0.00 0.00 38.12 4.17
2496 2691 6.070653 ACCGTAGTTAATAAACATCCTGGTGA 60.071 38.462 0.00 0.00 38.12 4.02
2497 2692 6.819649 CCGTAGTTAATAAACATCCTGGTGAA 59.180 38.462 0.00 0.00 38.12 3.18
2498 2693 7.334921 CCGTAGTTAATAAACATCCTGGTGAAA 59.665 37.037 0.00 0.00 38.12 2.69
2499 2694 8.173130 CGTAGTTAATAAACATCCTGGTGAAAC 58.827 37.037 0.00 0.00 38.12 2.78
2500 2695 9.005777 GTAGTTAATAAACATCCTGGTGAAACA 57.994 33.333 0.00 0.00 36.89 2.83
2501 2696 8.110860 AGTTAATAAACATCCTGGTGAAACAG 57.889 34.615 0.00 0.00 36.89 3.16
2502 2697 7.176690 AGTTAATAAACATCCTGGTGAAACAGG 59.823 37.037 8.17 8.17 46.85 4.00
2510 2705 2.654863 CTGGTGAAACAGGAACCAAGT 58.345 47.619 0.00 0.00 43.21 3.16
2511 2706 2.358898 CTGGTGAAACAGGAACCAAGTG 59.641 50.000 0.00 0.00 43.21 3.16
2512 2707 1.681264 GGTGAAACAGGAACCAAGTGG 59.319 52.381 0.00 0.00 39.98 4.00
2513 2708 1.067060 GTGAAACAGGAACCAAGTGGC 59.933 52.381 0.00 0.00 35.91 5.01
2514 2709 0.310854 GAAACAGGAACCAAGTGGCG 59.689 55.000 0.00 0.00 39.32 5.69
2515 2710 0.106918 AAACAGGAACCAAGTGGCGA 60.107 50.000 0.00 0.00 39.32 5.54
2516 2711 0.818040 AACAGGAACCAAGTGGCGAC 60.818 55.000 0.00 0.00 39.32 5.19
2517 2712 1.227823 CAGGAACCAAGTGGCGACA 60.228 57.895 0.45 0.00 39.32 4.35
2518 2713 0.606401 CAGGAACCAAGTGGCGACAT 60.606 55.000 0.00 0.00 46.14 3.06
2519 2714 0.606401 AGGAACCAAGTGGCGACATG 60.606 55.000 0.00 0.00 46.14 3.21
2520 2715 0.889186 GGAACCAAGTGGCGACATGT 60.889 55.000 0.00 0.00 46.14 3.21
2521 2716 0.951558 GAACCAAGTGGCGACATGTT 59.048 50.000 0.00 0.00 46.14 2.71
2522 2717 1.336755 GAACCAAGTGGCGACATGTTT 59.663 47.619 0.00 0.00 46.14 2.83
2523 2718 1.398692 ACCAAGTGGCGACATGTTTT 58.601 45.000 0.00 0.00 46.14 2.43
2524 2719 1.754226 ACCAAGTGGCGACATGTTTTT 59.246 42.857 0.00 0.00 46.14 1.94
2561 2756 3.801997 CTTCCCCGGCCTCTGCAT 61.802 66.667 0.00 0.00 40.13 3.96
2562 2757 3.764160 CTTCCCCGGCCTCTGCATC 62.764 68.421 0.00 0.00 40.13 3.91
2564 2759 4.559063 CCCCGGCCTCTGCATCAG 62.559 72.222 0.00 0.00 40.13 2.90
2581 2776 3.748623 GCATGATGCATACGGCCA 58.251 55.556 13.36 0.00 44.26 5.36
2582 2777 2.260247 GCATGATGCATACGGCCAT 58.740 52.632 13.36 0.00 44.26 4.40
2583 2778 0.169672 GCATGATGCATACGGCCATC 59.830 55.000 13.36 0.00 44.26 3.51
2584 2779 1.817357 CATGATGCATACGGCCATCT 58.183 50.000 2.24 0.00 43.89 2.90
2585 2780 2.156917 CATGATGCATACGGCCATCTT 58.843 47.619 2.24 0.00 43.89 2.40
2586 2781 3.337358 CATGATGCATACGGCCATCTTA 58.663 45.455 2.24 0.00 43.89 2.10
2587 2782 3.701205 TGATGCATACGGCCATCTTAT 57.299 42.857 2.24 0.00 43.89 1.73
2588 2783 4.019792 TGATGCATACGGCCATCTTATT 57.980 40.909 2.24 0.00 43.89 1.40
2589 2784 5.159273 TGATGCATACGGCCATCTTATTA 57.841 39.130 2.24 0.00 43.89 0.98
2590 2785 5.555966 TGATGCATACGGCCATCTTATTAA 58.444 37.500 2.24 0.00 43.89 1.40
2591 2786 5.643348 TGATGCATACGGCCATCTTATTAAG 59.357 40.000 2.24 0.00 43.89 1.85
2592 2787 3.751175 TGCATACGGCCATCTTATTAAGC 59.249 43.478 2.24 0.00 43.89 3.09
2593 2788 3.751175 GCATACGGCCATCTTATTAAGCA 59.249 43.478 2.24 0.00 36.11 3.91
2594 2789 4.396166 GCATACGGCCATCTTATTAAGCAT 59.604 41.667 2.24 0.00 36.11 3.79
2595 2790 5.584649 GCATACGGCCATCTTATTAAGCATA 59.415 40.000 2.24 0.00 36.11 3.14
2596 2791 6.093495 GCATACGGCCATCTTATTAAGCATAA 59.907 38.462 2.24 0.00 36.11 1.90
2597 2792 7.361713 GCATACGGCCATCTTATTAAGCATAAA 60.362 37.037 2.24 0.00 36.11 1.40
2598 2793 6.952773 ACGGCCATCTTATTAAGCATAAAA 57.047 33.333 2.24 0.00 0.00 1.52
2599 2794 7.524717 ACGGCCATCTTATTAAGCATAAAAT 57.475 32.000 2.24 0.00 0.00 1.82
2600 2795 8.630054 ACGGCCATCTTATTAAGCATAAAATA 57.370 30.769 2.24 0.00 0.00 1.40
2601 2796 8.730680 ACGGCCATCTTATTAAGCATAAAATAG 58.269 33.333 2.24 0.00 0.00 1.73
2602 2797 8.730680 CGGCCATCTTATTAAGCATAAAATAGT 58.269 33.333 2.24 0.00 0.00 2.12
2615 2810 7.697691 AGCATAAAATAGTCCACAAAATCTCG 58.302 34.615 0.00 0.00 0.00 4.04
2616 2811 7.552687 AGCATAAAATAGTCCACAAAATCTCGA 59.447 33.333 0.00 0.00 0.00 4.04
2617 2812 8.181573 GCATAAAATAGTCCACAAAATCTCGAA 58.818 33.333 0.00 0.00 0.00 3.71
2618 2813 9.708222 CATAAAATAGTCCACAAAATCTCGAAG 57.292 33.333 0.00 0.00 0.00 3.79
2619 2814 7.745620 AAAATAGTCCACAAAATCTCGAAGT 57.254 32.000 0.00 0.00 0.00 3.01
2620 2815 6.969828 AATAGTCCACAAAATCTCGAAGTC 57.030 37.500 0.00 0.00 0.00 3.01
2621 2816 4.608948 AGTCCACAAAATCTCGAAGTCT 57.391 40.909 0.00 0.00 0.00 3.24
2622 2817 4.561105 AGTCCACAAAATCTCGAAGTCTC 58.439 43.478 0.00 0.00 0.00 3.36
2623 2818 4.039245 AGTCCACAAAATCTCGAAGTCTCA 59.961 41.667 0.00 0.00 0.00 3.27
2624 2819 4.750098 GTCCACAAAATCTCGAAGTCTCAA 59.250 41.667 0.00 0.00 0.00 3.02
2625 2820 4.991056 TCCACAAAATCTCGAAGTCTCAAG 59.009 41.667 0.00 0.00 0.00 3.02
2626 2821 4.153117 CCACAAAATCTCGAAGTCTCAAGG 59.847 45.833 0.00 0.00 0.00 3.61
2627 2822 4.752101 CACAAAATCTCGAAGTCTCAAGGT 59.248 41.667 0.00 0.00 0.00 3.50
2628 2823 5.237344 CACAAAATCTCGAAGTCTCAAGGTT 59.763 40.000 0.00 0.00 0.00 3.50
2629 2824 5.237344 ACAAAATCTCGAAGTCTCAAGGTTG 59.763 40.000 0.00 0.00 0.00 3.77
2630 2825 4.608948 AATCTCGAAGTCTCAAGGTTGT 57.391 40.909 0.00 0.00 0.00 3.32
2631 2826 3.644884 TCTCGAAGTCTCAAGGTTGTC 57.355 47.619 0.00 0.00 0.00 3.18
2632 2827 2.956333 TCTCGAAGTCTCAAGGTTGTCA 59.044 45.455 0.00 0.00 0.00 3.58
2633 2828 3.383505 TCTCGAAGTCTCAAGGTTGTCAA 59.616 43.478 0.00 0.00 0.00 3.18
2634 2829 3.454375 TCGAAGTCTCAAGGTTGTCAAC 58.546 45.455 7.20 7.20 0.00 3.18
2635 2830 3.118920 TCGAAGTCTCAAGGTTGTCAACA 60.119 43.478 17.29 0.00 0.00 3.33
2636 2831 3.621268 CGAAGTCTCAAGGTTGTCAACAA 59.379 43.478 17.29 0.00 0.00 2.83
2637 2832 4.260375 CGAAGTCTCAAGGTTGTCAACAAG 60.260 45.833 17.29 8.69 36.39 3.16
2638 2833 4.487714 AGTCTCAAGGTTGTCAACAAGA 57.512 40.909 17.29 10.62 36.39 3.02
2639 2834 4.843728 AGTCTCAAGGTTGTCAACAAGAA 58.156 39.130 17.29 0.00 36.39 2.52
2640 2835 5.253330 AGTCTCAAGGTTGTCAACAAGAAA 58.747 37.500 17.29 0.00 36.39 2.52
2641 2836 5.710099 AGTCTCAAGGTTGTCAACAAGAAAA 59.290 36.000 17.29 1.38 36.39 2.29
2642 2837 6.030228 GTCTCAAGGTTGTCAACAAGAAAAG 58.970 40.000 17.29 6.83 36.39 2.27
2643 2838 5.710099 TCTCAAGGTTGTCAACAAGAAAAGT 59.290 36.000 17.29 0.00 36.39 2.66
2644 2839 6.882140 TCTCAAGGTTGTCAACAAGAAAAGTA 59.118 34.615 17.29 0.00 36.39 2.24
2645 2840 7.392113 TCTCAAGGTTGTCAACAAGAAAAGTAA 59.608 33.333 17.29 0.00 36.39 2.24
2646 2841 7.535139 TCAAGGTTGTCAACAAGAAAAGTAAG 58.465 34.615 17.29 0.00 36.39 2.34
2647 2842 7.392113 TCAAGGTTGTCAACAAGAAAAGTAAGA 59.608 33.333 17.29 0.00 36.39 2.10
2648 2843 7.696992 AGGTTGTCAACAAGAAAAGTAAGAA 57.303 32.000 17.29 0.00 36.39 2.52
2649 2844 8.117813 AGGTTGTCAACAAGAAAAGTAAGAAA 57.882 30.769 17.29 0.00 36.39 2.52
2650 2845 8.581578 AGGTTGTCAACAAGAAAAGTAAGAAAA 58.418 29.630 17.29 0.00 36.39 2.29
2651 2846 8.860128 GGTTGTCAACAAGAAAAGTAAGAAAAG 58.140 33.333 17.29 0.00 36.39 2.27
2652 2847 8.860128 GTTGTCAACAAGAAAAGTAAGAAAAGG 58.140 33.333 10.93 0.00 36.39 3.11
2653 2848 7.033185 TGTCAACAAGAAAAGTAAGAAAAGGC 58.967 34.615 0.00 0.00 0.00 4.35
2654 2849 7.093945 TGTCAACAAGAAAAGTAAGAAAAGGCT 60.094 33.333 0.00 0.00 0.00 4.58
2655 2850 7.432545 GTCAACAAGAAAAGTAAGAAAAGGCTC 59.567 37.037 0.00 0.00 0.00 4.70
2656 2851 7.122055 TCAACAAGAAAAGTAAGAAAAGGCTCA 59.878 33.333 0.00 0.00 0.00 4.26
2657 2852 6.796426 ACAAGAAAAGTAAGAAAAGGCTCAC 58.204 36.000 0.00 0.00 0.00 3.51
2658 2853 6.377146 ACAAGAAAAGTAAGAAAAGGCTCACA 59.623 34.615 0.00 0.00 0.00 3.58
2659 2854 6.378710 AGAAAAGTAAGAAAAGGCTCACAC 57.621 37.500 0.00 0.00 0.00 3.82
2660 2855 5.885912 AGAAAAGTAAGAAAAGGCTCACACA 59.114 36.000 0.00 0.00 0.00 3.72
2661 2856 5.757850 AAAGTAAGAAAAGGCTCACACAG 57.242 39.130 0.00 0.00 0.00 3.66
2662 2857 4.689612 AGTAAGAAAAGGCTCACACAGA 57.310 40.909 0.00 0.00 0.00 3.41
2670 2865 4.586618 CTCACACAGAGCCCGAAG 57.413 61.111 0.00 0.00 37.59 3.79
2671 2866 1.079543 CTCACACAGAGCCCGAAGG 60.080 63.158 0.00 0.00 41.40 3.46
2685 2880 2.474816 CCGAAGGCTAGATACACAAGC 58.525 52.381 0.00 0.00 46.14 4.01
2686 2881 2.101582 CCGAAGGCTAGATACACAAGCT 59.898 50.000 0.00 0.00 46.14 3.74
2687 2882 3.318275 CCGAAGGCTAGATACACAAGCTA 59.682 47.826 0.00 0.00 46.14 3.32
2688 2883 4.541779 CGAAGGCTAGATACACAAGCTAG 58.458 47.826 0.00 0.00 36.48 3.42
2695 2890 3.274288 AGATACACAAGCTAGCCAAAGC 58.726 45.455 12.13 0.00 43.11 3.51
2696 2891 2.559698 TACACAAGCTAGCCAAAGCA 57.440 45.000 12.13 0.00 45.30 3.91
2697 2892 0.954452 ACACAAGCTAGCCAAAGCAC 59.046 50.000 12.13 0.00 45.30 4.40
2698 2893 1.242076 CACAAGCTAGCCAAAGCACT 58.758 50.000 12.13 0.00 45.30 4.40
2699 2894 1.610522 CACAAGCTAGCCAAAGCACTT 59.389 47.619 12.13 0.00 45.30 3.16
2700 2895 2.813754 CACAAGCTAGCCAAAGCACTTA 59.186 45.455 12.13 0.00 45.30 2.24
2701 2896 3.441572 CACAAGCTAGCCAAAGCACTTAT 59.558 43.478 12.13 0.00 45.30 1.73
2702 2897 4.635765 CACAAGCTAGCCAAAGCACTTATA 59.364 41.667 12.13 0.00 45.30 0.98
2703 2898 4.636206 ACAAGCTAGCCAAAGCACTTATAC 59.364 41.667 12.13 0.00 45.30 1.47
2704 2899 4.487714 AGCTAGCCAAAGCACTTATACA 57.512 40.909 12.13 0.00 45.30 2.29
2705 2900 5.041191 AGCTAGCCAAAGCACTTATACAT 57.959 39.130 12.13 0.00 45.30 2.29
2706 2901 5.059833 AGCTAGCCAAAGCACTTATACATC 58.940 41.667 12.13 0.00 45.30 3.06
2707 2902 4.816385 GCTAGCCAAAGCACTTATACATCA 59.184 41.667 2.29 0.00 43.56 3.07
2708 2903 5.277538 GCTAGCCAAAGCACTTATACATCAC 60.278 44.000 2.29 0.00 43.56 3.06
2709 2904 4.588899 AGCCAAAGCACTTATACATCACA 58.411 39.130 0.00 0.00 43.56 3.58
2710 2905 4.637534 AGCCAAAGCACTTATACATCACAG 59.362 41.667 0.00 0.00 43.56 3.66
2711 2906 4.731773 GCCAAAGCACTTATACATCACAGC 60.732 45.833 0.00 0.00 39.53 4.40
2712 2907 4.201950 CCAAAGCACTTATACATCACAGCC 60.202 45.833 0.00 0.00 0.00 4.85
2713 2908 2.826428 AGCACTTATACATCACAGCCG 58.174 47.619 0.00 0.00 0.00 5.52
2714 2909 2.168521 AGCACTTATACATCACAGCCGT 59.831 45.455 0.00 0.00 0.00 5.68
2715 2910 2.936498 GCACTTATACATCACAGCCGTT 59.064 45.455 0.00 0.00 0.00 4.44
2716 2911 3.374058 GCACTTATACATCACAGCCGTTT 59.626 43.478 0.00 0.00 0.00 3.60
2717 2912 4.727734 GCACTTATACATCACAGCCGTTTG 60.728 45.833 0.00 0.00 0.00 2.93
2718 2913 3.938963 ACTTATACATCACAGCCGTTTGG 59.061 43.478 0.00 0.00 38.77 3.28
2731 2926 3.487563 CCGTTTGGCTCCAAAATAGAC 57.512 47.619 14.97 3.42 45.86 2.59
2732 2927 2.817258 CCGTTTGGCTCCAAAATAGACA 59.183 45.455 14.97 0.00 45.86 3.41
2733 2928 3.119849 CCGTTTGGCTCCAAAATAGACAG 60.120 47.826 14.97 1.92 45.86 3.51
2734 2929 3.119849 CGTTTGGCTCCAAAATAGACAGG 60.120 47.826 14.97 0.00 45.86 4.00
2735 2930 3.806949 TTGGCTCCAAAATAGACAGGT 57.193 42.857 0.00 0.00 32.36 4.00
2736 2931 4.919774 TTGGCTCCAAAATAGACAGGTA 57.080 40.909 0.00 0.00 32.36 3.08
2737 2932 4.919774 TGGCTCCAAAATAGACAGGTAA 57.080 40.909 0.00 0.00 0.00 2.85
2738 2933 5.249780 TGGCTCCAAAATAGACAGGTAAA 57.750 39.130 0.00 0.00 0.00 2.01
2739 2934 5.007682 TGGCTCCAAAATAGACAGGTAAAC 58.992 41.667 0.00 0.00 0.00 2.01
2740 2935 5.222048 TGGCTCCAAAATAGACAGGTAAACT 60.222 40.000 0.00 0.00 0.00 2.66
2741 2936 6.013206 TGGCTCCAAAATAGACAGGTAAACTA 60.013 38.462 0.00 0.00 0.00 2.24
2742 2937 6.882678 GGCTCCAAAATAGACAGGTAAACTAA 59.117 38.462 0.00 0.00 0.00 2.24
2743 2938 7.556635 GGCTCCAAAATAGACAGGTAAACTAAT 59.443 37.037 0.00 0.00 0.00 1.73
2744 2939 8.957466 GCTCCAAAATAGACAGGTAAACTAATT 58.043 33.333 0.00 0.00 0.00 1.40
2746 2941 8.736244 TCCAAAATAGACAGGTAAACTAATTGC 58.264 33.333 0.00 0.00 0.00 3.56
2747 2942 7.973944 CCAAAATAGACAGGTAAACTAATTGCC 59.026 37.037 0.00 0.00 43.60 4.52
2758 2953 8.151141 GGTAAACTAATTGCCTATCCTGTTAC 57.849 38.462 0.00 0.00 40.38 2.50
2759 2954 7.771826 GGTAAACTAATTGCCTATCCTGTTACA 59.228 37.037 0.00 0.00 40.38 2.41
2760 2955 7.625828 AAACTAATTGCCTATCCTGTTACAC 57.374 36.000 0.00 0.00 0.00 2.90
2761 2956 5.357257 ACTAATTGCCTATCCTGTTACACG 58.643 41.667 0.00 0.00 0.00 4.49
2762 2957 4.481368 AATTGCCTATCCTGTTACACGA 57.519 40.909 0.00 0.00 0.00 4.35
2763 2958 2.953466 TGCCTATCCTGTTACACGAC 57.047 50.000 0.00 0.00 0.00 4.34
2764 2959 1.479323 TGCCTATCCTGTTACACGACC 59.521 52.381 0.00 0.00 0.00 4.79
2765 2960 1.535437 GCCTATCCTGTTACACGACCG 60.535 57.143 0.00 0.00 0.00 4.79
2766 2961 1.535437 CCTATCCTGTTACACGACCGC 60.535 57.143 0.00 0.00 0.00 5.68
2767 2962 0.457035 TATCCTGTTACACGACCGCC 59.543 55.000 0.00 0.00 0.00 6.13
2768 2963 1.537814 ATCCTGTTACACGACCGCCA 61.538 55.000 0.00 0.00 0.00 5.69
2769 2964 1.079405 CCTGTTACACGACCGCCAT 60.079 57.895 0.00 0.00 0.00 4.40
2770 2965 1.082117 CCTGTTACACGACCGCCATC 61.082 60.000 0.00 0.00 0.00 3.51
2771 2966 1.079681 TGTTACACGACCGCCATCC 60.080 57.895 0.00 0.00 0.00 3.51
2772 2967 1.079681 GTTACACGACCGCCATCCA 60.080 57.895 0.00 0.00 0.00 3.41
2773 2968 0.671163 GTTACACGACCGCCATCCAA 60.671 55.000 0.00 0.00 0.00 3.53
2774 2969 0.035036 TTACACGACCGCCATCCAAA 59.965 50.000 0.00 0.00 0.00 3.28
2775 2970 0.671163 TACACGACCGCCATCCAAAC 60.671 55.000 0.00 0.00 0.00 2.93
2776 2971 2.359478 ACGACCGCCATCCAAACC 60.359 61.111 0.00 0.00 0.00 3.27
2777 2972 3.496131 CGACCGCCATCCAAACCG 61.496 66.667 0.00 0.00 0.00 4.44
2778 2973 3.131478 GACCGCCATCCAAACCGG 61.131 66.667 0.00 0.00 45.80 5.28
2781 2976 3.814268 CGCCATCCAAACCGGCTG 61.814 66.667 0.00 0.00 43.95 4.85
2782 2977 2.361104 GCCATCCAAACCGGCTGA 60.361 61.111 0.00 0.00 42.78 4.26
2783 2978 1.976474 GCCATCCAAACCGGCTGAA 60.976 57.895 0.00 0.00 42.78 3.02
2784 2979 1.322538 GCCATCCAAACCGGCTGAAT 61.323 55.000 0.00 0.00 42.78 2.57
2785 2980 2.021723 GCCATCCAAACCGGCTGAATA 61.022 52.381 0.00 0.00 42.78 1.75
2786 2981 2.586425 CCATCCAAACCGGCTGAATAT 58.414 47.619 0.00 0.00 32.15 1.28
2787 2982 3.750371 CCATCCAAACCGGCTGAATATA 58.250 45.455 0.00 0.00 32.15 0.86
2788 2983 4.335416 CCATCCAAACCGGCTGAATATAT 58.665 43.478 0.00 0.00 32.15 0.86
2789 2984 4.396166 CCATCCAAACCGGCTGAATATATC 59.604 45.833 0.00 0.00 32.15 1.63
2790 2985 4.015872 TCCAAACCGGCTGAATATATCC 57.984 45.455 0.00 0.00 33.14 2.59
2791 2986 3.081804 CCAAACCGGCTGAATATATCCC 58.918 50.000 0.00 0.00 0.00 3.85
2792 2987 2.742053 CAAACCGGCTGAATATATCCCG 59.258 50.000 0.00 6.95 38.71 5.14
2793 2988 1.933021 ACCGGCTGAATATATCCCGA 58.067 50.000 0.00 0.00 41.34 5.14
2794 2989 1.825474 ACCGGCTGAATATATCCCGAG 59.175 52.381 0.00 7.67 41.34 4.63
2795 2990 1.471676 CCGGCTGAATATATCCCGAGC 60.472 57.143 12.76 6.29 41.34 5.03
2796 2991 1.478510 CGGCTGAATATATCCCGAGCT 59.521 52.381 7.80 0.00 41.34 4.09
2797 2992 2.688446 CGGCTGAATATATCCCGAGCTA 59.312 50.000 7.80 0.00 41.34 3.32
2798 2993 3.489398 CGGCTGAATATATCCCGAGCTAC 60.489 52.174 7.80 0.00 41.34 3.58
2799 2994 3.181474 GGCTGAATATATCCCGAGCTACC 60.181 52.174 0.00 0.00 0.00 3.18
2800 2995 3.447586 GCTGAATATATCCCGAGCTACCA 59.552 47.826 0.00 0.00 0.00 3.25
2801 2996 4.100189 GCTGAATATATCCCGAGCTACCAT 59.900 45.833 0.00 0.00 0.00 3.55
2802 2997 5.737635 GCTGAATATATCCCGAGCTACCATC 60.738 48.000 0.00 0.00 0.00 3.51
2803 2998 5.519808 TGAATATATCCCGAGCTACCATCT 58.480 41.667 0.00 0.00 0.00 2.90
2804 2999 5.594725 TGAATATATCCCGAGCTACCATCTC 59.405 44.000 0.00 0.00 0.00 2.75
2805 3000 2.217510 TATCCCGAGCTACCATCTCC 57.782 55.000 0.00 0.00 0.00 3.71
2806 3001 0.543174 ATCCCGAGCTACCATCTCCC 60.543 60.000 0.00 0.00 0.00 4.30
2807 3002 1.457643 CCCGAGCTACCATCTCCCA 60.458 63.158 0.00 0.00 0.00 4.37
2808 3003 0.833834 CCCGAGCTACCATCTCCCAT 60.834 60.000 0.00 0.00 0.00 4.00
2809 3004 0.605589 CCGAGCTACCATCTCCCATC 59.394 60.000 0.00 0.00 0.00 3.51
2810 3005 0.242286 CGAGCTACCATCTCCCATCG 59.758 60.000 0.00 0.00 0.00 3.84
2811 3006 0.605589 GAGCTACCATCTCCCATCGG 59.394 60.000 0.00 0.00 0.00 4.18
2812 3007 0.188587 AGCTACCATCTCCCATCGGA 59.811 55.000 0.00 0.00 36.45 4.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.518493 AGTTCATGAACATGCAGAAAAATGT 58.482 32.000 33.92 10.69 43.47 2.71
1 2 7.416154 AAGTTCATGAACATGCAGAAAAATG 57.584 32.000 33.92 0.00 43.47 2.32
2 3 8.441312 AAAAGTTCATGAACATGCAGAAAAAT 57.559 26.923 33.92 11.28 43.47 1.82
3 4 7.846644 AAAAGTTCATGAACATGCAGAAAAA 57.153 28.000 33.92 0.00 43.47 1.94
4 5 7.846644 AAAAAGTTCATGAACATGCAGAAAA 57.153 28.000 33.92 0.00 43.47 2.29
35 36 9.703892 TCTTTCAAAGAAATGAAACTTCACAAA 57.296 25.926 0.00 0.00 42.68 2.83
36 37 9.703892 TTCTTTCAAAGAAATGAAACTTCACAA 57.296 25.926 10.29 0.00 44.10 3.33
50 51 7.803189 GCTCATACACGATTTTCTTTCAAAGAA 59.197 33.333 8.60 8.60 45.30 2.52
51 52 7.041440 TGCTCATACACGATTTTCTTTCAAAGA 60.041 33.333 0.00 0.00 35.26 2.52
52 53 7.077605 TGCTCATACACGATTTTCTTTCAAAG 58.922 34.615 0.00 0.00 0.00 2.77
53 54 6.964908 TGCTCATACACGATTTTCTTTCAAA 58.035 32.000 0.00 0.00 0.00 2.69
54 55 6.552859 TGCTCATACACGATTTTCTTTCAA 57.447 33.333 0.00 0.00 0.00 2.69
55 56 5.390885 GCTGCTCATACACGATTTTCTTTCA 60.391 40.000 0.00 0.00 0.00 2.69
56 57 5.024555 GCTGCTCATACACGATTTTCTTTC 58.975 41.667 0.00 0.00 0.00 2.62
57 58 4.697352 AGCTGCTCATACACGATTTTCTTT 59.303 37.500 0.00 0.00 0.00 2.52
58 59 4.256920 AGCTGCTCATACACGATTTTCTT 58.743 39.130 0.00 0.00 0.00 2.52
59 60 3.866651 AGCTGCTCATACACGATTTTCT 58.133 40.909 0.00 0.00 0.00 2.52
60 61 4.317418 CGTAGCTGCTCATACACGATTTTC 60.317 45.833 14.81 0.00 0.00 2.29
61 62 3.551890 CGTAGCTGCTCATACACGATTTT 59.448 43.478 14.81 0.00 0.00 1.82
62 63 3.116300 CGTAGCTGCTCATACACGATTT 58.884 45.455 14.81 0.00 0.00 2.17
63 64 2.357952 TCGTAGCTGCTCATACACGATT 59.642 45.455 17.68 0.00 33.88 3.34
64 65 1.947456 TCGTAGCTGCTCATACACGAT 59.053 47.619 17.68 0.00 33.88 3.73
65 66 1.375551 TCGTAGCTGCTCATACACGA 58.624 50.000 17.68 17.68 36.19 4.35
66 67 2.047040 CATCGTAGCTGCTCATACACG 58.953 52.381 4.91 10.69 0.00 4.49
67 68 2.223829 ACCATCGTAGCTGCTCATACAC 60.224 50.000 4.91 0.00 0.00 2.90
68 69 2.031870 ACCATCGTAGCTGCTCATACA 58.968 47.619 4.91 0.00 0.00 2.29
69 70 2.802787 ACCATCGTAGCTGCTCATAC 57.197 50.000 4.91 0.00 0.00 2.39
70 71 3.819564 AAACCATCGTAGCTGCTCATA 57.180 42.857 4.91 0.00 0.00 2.15
71 72 2.698855 AAACCATCGTAGCTGCTCAT 57.301 45.000 4.91 0.00 0.00 2.90
72 73 3.819564 ATAAACCATCGTAGCTGCTCA 57.180 42.857 4.91 0.00 0.00 4.26
73 74 5.753921 ACTTTATAAACCATCGTAGCTGCTC 59.246 40.000 4.91 0.00 0.00 4.26
74 75 5.523916 CACTTTATAAACCATCGTAGCTGCT 59.476 40.000 7.57 7.57 0.00 4.24
75 76 5.293569 ACACTTTATAAACCATCGTAGCTGC 59.706 40.000 0.00 0.00 0.00 5.25
76 77 6.903883 ACACTTTATAAACCATCGTAGCTG 57.096 37.500 0.00 0.00 0.00 4.24
77 78 7.224167 GCTAACACTTTATAAACCATCGTAGCT 59.776 37.037 0.00 0.00 0.00 3.32
78 79 7.342942 GCTAACACTTTATAAACCATCGTAGC 58.657 38.462 0.00 0.66 0.00 3.58
79 80 7.553034 CGCTAACACTTTATAAACCATCGTAG 58.447 38.462 0.00 0.00 0.00 3.51
80 81 6.019640 GCGCTAACACTTTATAAACCATCGTA 60.020 38.462 0.00 0.00 0.00 3.43
81 82 5.220529 GCGCTAACACTTTATAAACCATCGT 60.221 40.000 0.00 0.00 0.00 3.73
82 83 5.006358 AGCGCTAACACTTTATAAACCATCG 59.994 40.000 8.99 0.00 0.00 3.84
83 84 6.192360 CAGCGCTAACACTTTATAAACCATC 58.808 40.000 10.99 0.00 0.00 3.51
84 85 5.065988 CCAGCGCTAACACTTTATAAACCAT 59.934 40.000 10.99 0.00 0.00 3.55
85 86 4.393680 CCAGCGCTAACACTTTATAAACCA 59.606 41.667 10.99 0.00 0.00 3.67
86 87 4.632688 TCCAGCGCTAACACTTTATAAACC 59.367 41.667 10.99 0.00 0.00 3.27
87 88 5.789710 TCCAGCGCTAACACTTTATAAAC 57.210 39.130 10.99 0.00 0.00 2.01
88 89 6.995511 AATCCAGCGCTAACACTTTATAAA 57.004 33.333 10.99 0.00 0.00 1.40
89 90 6.995511 AAATCCAGCGCTAACACTTTATAA 57.004 33.333 10.99 0.00 0.00 0.98
90 91 6.373216 ACAAAATCCAGCGCTAACACTTTATA 59.627 34.615 10.99 0.00 0.00 0.98
91 92 5.183140 ACAAAATCCAGCGCTAACACTTTAT 59.817 36.000 10.99 0.00 0.00 1.40
92 93 4.517453 ACAAAATCCAGCGCTAACACTTTA 59.483 37.500 10.99 0.00 0.00 1.85
93 94 3.317993 ACAAAATCCAGCGCTAACACTTT 59.682 39.130 10.99 3.62 0.00 2.66
94 95 2.884639 ACAAAATCCAGCGCTAACACTT 59.115 40.909 10.99 0.00 0.00 3.16
95 96 2.484264 GACAAAATCCAGCGCTAACACT 59.516 45.455 10.99 0.00 0.00 3.55
96 97 2.225491 TGACAAAATCCAGCGCTAACAC 59.775 45.455 10.99 0.00 0.00 3.32
97 98 2.225491 GTGACAAAATCCAGCGCTAACA 59.775 45.455 10.99 0.00 0.00 2.41
98 99 2.484264 AGTGACAAAATCCAGCGCTAAC 59.516 45.455 10.99 0.00 0.00 2.34
99 100 2.778299 AGTGACAAAATCCAGCGCTAA 58.222 42.857 10.99 0.64 0.00 3.09
100 101 2.472695 AGTGACAAAATCCAGCGCTA 57.527 45.000 10.99 0.00 0.00 4.26
101 102 1.267806 CAAGTGACAAAATCCAGCGCT 59.732 47.619 2.64 2.64 0.00 5.92
102 103 1.689959 CAAGTGACAAAATCCAGCGC 58.310 50.000 0.00 0.00 0.00 5.92
103 104 1.001487 TGCAAGTGACAAAATCCAGCG 60.001 47.619 0.00 0.00 0.00 5.18
104 105 2.796593 GTTGCAAGTGACAAAATCCAGC 59.203 45.455 0.00 0.00 0.00 4.85
105 106 3.181477 TGGTTGCAAGTGACAAAATCCAG 60.181 43.478 0.00 0.00 0.00 3.86
106 107 2.762887 TGGTTGCAAGTGACAAAATCCA 59.237 40.909 0.00 0.00 0.00 3.41
107 108 3.123050 GTGGTTGCAAGTGACAAAATCC 58.877 45.455 0.00 0.00 0.00 3.01
108 109 3.779759 TGTGGTTGCAAGTGACAAAATC 58.220 40.909 0.00 0.00 0.00 2.17
109 110 3.883830 TGTGGTTGCAAGTGACAAAAT 57.116 38.095 0.00 0.00 0.00 1.82
110 111 3.519579 CATGTGGTTGCAAGTGACAAAA 58.480 40.909 0.00 0.00 0.00 2.44
111 112 2.738000 GCATGTGGTTGCAAGTGACAAA 60.738 45.455 0.00 0.00 42.31 2.83
112 113 1.202394 GCATGTGGTTGCAAGTGACAA 60.202 47.619 0.00 0.00 42.31 3.18
113 114 0.385029 GCATGTGGTTGCAAGTGACA 59.615 50.000 0.00 3.26 42.31 3.58
114 115 0.318955 GGCATGTGGTTGCAAGTGAC 60.319 55.000 0.00 0.00 44.59 3.67
115 116 1.462731 GGGCATGTGGTTGCAAGTGA 61.463 55.000 0.00 0.00 44.59 3.41
116 117 1.005867 GGGCATGTGGTTGCAAGTG 60.006 57.895 0.00 0.00 44.59 3.16
117 118 0.112218 TAGGGCATGTGGTTGCAAGT 59.888 50.000 0.00 0.00 44.59 3.16
118 119 0.813184 CTAGGGCATGTGGTTGCAAG 59.187 55.000 0.00 0.00 44.59 4.01
119 120 0.112218 ACTAGGGCATGTGGTTGCAA 59.888 50.000 0.00 0.00 44.59 4.08
120 121 0.608856 CACTAGGGCATGTGGTTGCA 60.609 55.000 0.00 0.00 44.59 4.08
121 122 1.315257 CCACTAGGGCATGTGGTTGC 61.315 60.000 12.59 0.00 46.18 4.17
122 123 2.872408 CCACTAGGGCATGTGGTTG 58.128 57.895 12.59 0.00 46.18 3.77
126 127 1.065491 TGCTAACCACTAGGGCATGTG 60.065 52.381 0.00 0.00 42.05 3.21
127 128 1.285280 TGCTAACCACTAGGGCATGT 58.715 50.000 0.00 0.00 42.05 3.21
128 129 2.017049 GTTGCTAACCACTAGGGCATG 58.983 52.381 0.00 0.00 42.05 4.06
129 130 1.916181 AGTTGCTAACCACTAGGGCAT 59.084 47.619 0.00 0.00 42.05 4.40
130 131 1.358152 AGTTGCTAACCACTAGGGCA 58.642 50.000 0.00 0.00 42.05 5.36
131 132 2.084546 CAAGTTGCTAACCACTAGGGC 58.915 52.381 0.00 0.00 42.05 5.19
132 133 3.418684 ACAAGTTGCTAACCACTAGGG 57.581 47.619 1.81 0.00 44.81 3.53
133 134 4.504858 CCTACAAGTTGCTAACCACTAGG 58.495 47.826 1.81 0.30 42.21 3.02
134 135 4.504858 CCCTACAAGTTGCTAACCACTAG 58.495 47.826 1.81 0.00 0.00 2.57
135 136 3.307199 GCCCTACAAGTTGCTAACCACTA 60.307 47.826 1.81 0.00 0.00 2.74
136 137 2.552373 GCCCTACAAGTTGCTAACCACT 60.552 50.000 1.81 0.00 0.00 4.00
137 138 1.810755 GCCCTACAAGTTGCTAACCAC 59.189 52.381 1.81 0.00 0.00 4.16
138 139 1.609580 CGCCCTACAAGTTGCTAACCA 60.610 52.381 1.81 0.00 0.00 3.67
139 140 1.084289 CGCCCTACAAGTTGCTAACC 58.916 55.000 1.81 0.00 0.00 2.85
140 141 0.446616 GCGCCCTACAAGTTGCTAAC 59.553 55.000 1.81 0.00 0.00 2.34
141 142 1.017177 CGCGCCCTACAAGTTGCTAA 61.017 55.000 0.00 0.00 0.00 3.09
142 143 1.447140 CGCGCCCTACAAGTTGCTA 60.447 57.895 0.00 0.00 0.00 3.49
143 144 2.742372 CGCGCCCTACAAGTTGCT 60.742 61.111 0.00 0.00 0.00 3.91
144 145 2.740714 CTCGCGCCCTACAAGTTGC 61.741 63.158 0.00 0.00 0.00 4.17
145 146 0.949105 AACTCGCGCCCTACAAGTTG 60.949 55.000 0.00 0.00 0.00 3.16
146 147 0.669625 GAACTCGCGCCCTACAAGTT 60.670 55.000 0.00 3.62 33.09 2.66
147 148 1.080025 GAACTCGCGCCCTACAAGT 60.080 57.895 0.00 0.00 0.00 3.16
148 149 2.158959 CGAACTCGCGCCCTACAAG 61.159 63.158 0.00 0.00 0.00 3.16
149 150 1.940883 ATCGAACTCGCGCCCTACAA 61.941 55.000 0.00 0.00 39.60 2.41
150 151 1.940883 AATCGAACTCGCGCCCTACA 61.941 55.000 0.00 0.00 39.60 2.74
151 152 1.207377 GAATCGAACTCGCGCCCTAC 61.207 60.000 0.00 0.00 39.60 3.18
152 153 1.065273 GAATCGAACTCGCGCCCTA 59.935 57.895 0.00 0.00 39.60 3.53
153 154 2.202756 GAATCGAACTCGCGCCCT 60.203 61.111 0.00 0.00 39.60 5.19
154 155 3.617538 CGAATCGAACTCGCGCCC 61.618 66.667 0.00 0.00 39.60 6.13
159 160 2.505498 CCACGGCGAATCGAACTCG 61.505 63.158 16.62 14.12 39.33 4.18
160 161 2.165301 CCCACGGCGAATCGAACTC 61.165 63.158 16.62 0.00 0.00 3.01
161 162 2.125673 CCCACGGCGAATCGAACT 60.126 61.111 16.62 0.00 0.00 3.01
162 163 2.125832 TCCCACGGCGAATCGAAC 60.126 61.111 16.62 0.00 0.00 3.95
163 164 2.183300 CTCCCACGGCGAATCGAA 59.817 61.111 16.62 0.00 0.00 3.71
164 165 4.508128 GCTCCCACGGCGAATCGA 62.508 66.667 16.62 1.99 0.00 3.59
165 166 4.514577 AGCTCCCACGGCGAATCG 62.515 66.667 16.62 0.00 34.52 3.34
166 167 0.461339 TAAAGCTCCCACGGCGAATC 60.461 55.000 16.62 0.00 34.52 2.52
167 168 0.180406 ATAAAGCTCCCACGGCGAAT 59.820 50.000 16.62 0.00 34.52 3.34
168 169 0.035820 AATAAAGCTCCCACGGCGAA 60.036 50.000 16.62 0.00 34.52 4.70
169 170 0.035820 AAATAAAGCTCCCACGGCGA 60.036 50.000 16.62 0.00 34.52 5.54
170 171 0.808755 AAAATAAAGCTCCCACGGCG 59.191 50.000 4.80 4.80 34.52 6.46
188 189 8.916654 TCATAAAATGCGCGAAAAGAATAAAAA 58.083 25.926 12.10 0.00 0.00 1.94
189 190 8.369588 GTCATAAAATGCGCGAAAAGAATAAAA 58.630 29.630 12.10 0.00 0.00 1.52
190 191 7.008810 GGTCATAAAATGCGCGAAAAGAATAAA 59.991 33.333 12.10 0.00 0.00 1.40
191 192 6.470877 GGTCATAAAATGCGCGAAAAGAATAA 59.529 34.615 12.10 0.00 0.00 1.40
192 193 5.968848 GGTCATAAAATGCGCGAAAAGAATA 59.031 36.000 12.10 0.00 0.00 1.75
193 194 4.798387 GGTCATAAAATGCGCGAAAAGAAT 59.202 37.500 12.10 0.00 0.00 2.40
194 195 4.162812 GGTCATAAAATGCGCGAAAAGAA 58.837 39.130 12.10 0.00 0.00 2.52
195 196 3.189495 TGGTCATAAAATGCGCGAAAAGA 59.811 39.130 12.10 0.00 0.00 2.52
196 197 3.497118 TGGTCATAAAATGCGCGAAAAG 58.503 40.909 12.10 0.00 0.00 2.27
197 198 3.560902 TGGTCATAAAATGCGCGAAAA 57.439 38.095 12.10 0.00 0.00 2.29
198 199 3.773860 ATGGTCATAAAATGCGCGAAA 57.226 38.095 12.10 0.00 0.00 3.46
199 200 3.773860 AATGGTCATAAAATGCGCGAA 57.226 38.095 12.10 0.00 0.00 4.70
200 201 3.773860 AAATGGTCATAAAATGCGCGA 57.226 38.095 12.10 0.00 0.00 5.87
201 202 3.611986 ACAAAATGGTCATAAAATGCGCG 59.388 39.130 0.00 0.00 0.00 6.86
202 203 4.624882 TCACAAAATGGTCATAAAATGCGC 59.375 37.500 0.00 0.00 0.00 6.09
203 204 5.220006 CGTCACAAAATGGTCATAAAATGCG 60.220 40.000 0.00 0.00 0.00 4.73
204 205 5.062058 CCGTCACAAAATGGTCATAAAATGC 59.938 40.000 0.00 0.00 0.00 3.56
205 206 6.089283 CACCGTCACAAAATGGTCATAAAATG 59.911 38.462 0.00 0.00 36.36 2.32
206 207 6.155827 CACCGTCACAAAATGGTCATAAAAT 58.844 36.000 0.00 0.00 36.36 1.82
207 208 5.524284 CACCGTCACAAAATGGTCATAAAA 58.476 37.500 0.00 0.00 36.36 1.52
208 209 4.557695 GCACCGTCACAAAATGGTCATAAA 60.558 41.667 0.00 0.00 36.36 1.40
209 210 3.057876 GCACCGTCACAAAATGGTCATAA 60.058 43.478 0.00 0.00 36.36 1.90
210 211 2.486203 GCACCGTCACAAAATGGTCATA 59.514 45.455 0.00 0.00 36.36 2.15
211 212 1.269448 GCACCGTCACAAAATGGTCAT 59.731 47.619 0.00 0.00 36.36 3.06
212 213 0.665835 GCACCGTCACAAAATGGTCA 59.334 50.000 0.00 0.00 36.36 4.02
213 214 0.039527 GGCACCGTCACAAAATGGTC 60.040 55.000 0.00 0.00 36.36 4.02
214 215 1.460273 GGGCACCGTCACAAAATGGT 61.460 55.000 0.00 0.00 40.86 3.55
215 216 1.288752 GGGCACCGTCACAAAATGG 59.711 57.895 0.00 0.00 40.86 3.16
216 217 4.963815 GGGCACCGTCACAAAATG 57.036 55.556 0.00 0.00 40.86 2.32
243 244 4.474846 CAACGCGAATTGGGCCGG 62.475 66.667 15.93 0.00 0.00 6.13
244 245 2.304516 CTACAACGCGAATTGGGCCG 62.305 60.000 15.93 0.00 33.63 6.13
245 246 1.427819 CTACAACGCGAATTGGGCC 59.572 57.895 15.93 0.00 33.63 5.80
246 247 1.226295 GCTACAACGCGAATTGGGC 60.226 57.895 15.93 12.88 33.63 5.36
264 265 2.685387 ATTAGGAGAAGCGGCGCTCG 62.685 60.000 36.44 10.91 38.25 5.03
265 266 0.941936 GATTAGGAGAAGCGGCGCTC 60.942 60.000 36.44 26.28 38.25 5.03
266 267 1.068250 GATTAGGAGAAGCGGCGCT 59.932 57.895 31.35 31.35 42.56 5.92
267 268 2.303676 CGATTAGGAGAAGCGGCGC 61.304 63.158 26.86 26.86 0.00 6.53
268 269 0.039074 ATCGATTAGGAGAAGCGGCG 60.039 55.000 0.51 0.51 0.00 6.46
269 270 2.156343 AATCGATTAGGAGAAGCGGC 57.844 50.000 9.39 0.00 0.00 6.53
279 280 1.404315 GGGGCGCTCCTAATCGATTAG 60.404 57.143 30.22 30.22 39.50 1.73
280 281 0.606604 GGGGCGCTCCTAATCGATTA 59.393 55.000 22.28 16.69 35.33 1.75
281 282 1.371558 GGGGCGCTCCTAATCGATT 59.628 57.895 22.28 16.15 35.33 3.34
282 283 2.932234 CGGGGCGCTCCTAATCGAT 61.932 63.158 26.87 0.00 35.33 3.59
283 284 3.602677 CGGGGCGCTCCTAATCGA 61.603 66.667 26.87 0.00 35.33 3.59
284 285 3.843117 GACGGGGCGCTCCTAATCG 62.843 68.421 26.87 13.50 35.33 3.34
285 286 2.029221 GACGGGGCGCTCCTAATC 59.971 66.667 26.87 15.55 35.33 1.75
286 287 2.100879 GATGACGGGGCGCTCCTAAT 62.101 60.000 26.87 15.02 35.33 1.73
287 288 2.762459 ATGACGGGGCGCTCCTAA 60.762 61.111 26.87 10.12 35.33 2.69
288 289 3.224324 GATGACGGGGCGCTCCTA 61.224 66.667 26.87 11.30 35.33 2.94
330 331 5.694231 TGAAAAATGACATGTCAGTGGAG 57.306 39.130 30.63 0.00 43.61 3.86
387 395 1.020861 GCATGTGTGCCAGTCGATCA 61.021 55.000 0.00 0.00 45.76 2.92
403 411 2.224821 ATGGACGACATGGGAGCAT 58.775 52.632 0.00 0.00 38.70 3.79
404 412 3.726004 ATGGACGACATGGGAGCA 58.274 55.556 0.00 0.00 38.70 4.26
412 423 2.482796 AATGGGCAGCATGGACGACA 62.483 55.000 0.00 0.00 35.86 4.35
414 425 0.611618 AAAATGGGCAGCATGGACGA 60.612 50.000 0.00 0.00 35.86 4.20
500 511 1.070471 GCATTTGTTTGCTACGCCCG 61.070 55.000 0.00 0.00 39.57 6.13
539 550 6.334989 CAATTGTGCCAATTGTGTCAGATAT 58.665 36.000 22.38 0.00 34.01 1.63
545 556 3.110447 ACCAATTGTGCCAATTGTGTC 57.890 42.857 25.66 0.00 36.24 3.67
549 560 4.378774 TGAAGAACCAATTGTGCCAATTG 58.621 39.130 23.15 23.15 37.38 2.32
595 606 1.153549 GGTAGACCTGCTGCCGAAG 60.154 63.158 0.00 0.00 39.68 3.79
609 622 5.104735 ACAGGCTAAAATCTCCTTGAGGTAG 60.105 44.000 0.00 0.00 36.34 3.18
616 629 6.071320 ACAAAGAACAGGCTAAAATCTCCTT 58.929 36.000 0.00 0.00 0.00 3.36
628 642 0.102300 AACCGCAACAAAGAACAGGC 59.898 50.000 0.00 0.00 0.00 4.85
645 659 2.243602 TCCACACGAAACCCACTAAC 57.756 50.000 0.00 0.00 0.00 2.34
657 671 4.822036 TTACAACATTTCCTTCCACACG 57.178 40.909 0.00 0.00 0.00 4.49
745 760 6.423001 GGTCATAATTAGGTTAGTTACAGCCG 59.577 42.308 0.00 0.00 0.00 5.52
775 790 7.869800 TGGCCATCACAAATTAAATTTCAAAC 58.130 30.769 0.00 0.00 0.00 2.93
790 805 0.325933 CCTCTCAACTGGCCATCACA 59.674 55.000 5.51 0.00 0.00 3.58
797 812 0.908198 ATCTGGTCCTCTCAACTGGC 59.092 55.000 0.00 0.00 0.00 4.85
799 814 2.830923 AGTCATCTGGTCCTCTCAACTG 59.169 50.000 0.00 0.00 0.00 3.16
810 825 2.315176 CTAGCTGGCTAGTCATCTGGT 58.685 52.381 18.35 1.60 40.68 4.00
831 853 7.779073 ACTGAACTCTACTCTACTCTAGTCTC 58.221 42.308 0.00 0.00 0.00 3.36
837 859 8.921353 TTTACAACTGAACTCTACTCTACTCT 57.079 34.615 0.00 0.00 0.00 3.24
838 860 7.751793 GCTTTACAACTGAACTCTACTCTACTC 59.248 40.741 0.00 0.00 0.00 2.59
839 861 7.230913 TGCTTTACAACTGAACTCTACTCTACT 59.769 37.037 0.00 0.00 0.00 2.57
840 862 7.368833 TGCTTTACAACTGAACTCTACTCTAC 58.631 38.462 0.00 0.00 0.00 2.59
912 947 3.181491 CGCCTCCTTTTTGAGTTTTGTGA 60.181 43.478 0.00 0.00 0.00 3.58
913 948 3.115554 CGCCTCCTTTTTGAGTTTTGTG 58.884 45.455 0.00 0.00 0.00 3.33
914 949 2.758423 ACGCCTCCTTTTTGAGTTTTGT 59.242 40.909 0.00 0.00 0.00 2.83
915 950 3.115554 CACGCCTCCTTTTTGAGTTTTG 58.884 45.455 0.00 0.00 0.00 2.44
916 951 2.100749 CCACGCCTCCTTTTTGAGTTTT 59.899 45.455 0.00 0.00 0.00 2.43
937 972 0.244994 TCTTTGCTCTCTCTCACCGC 59.755 55.000 0.00 0.00 0.00 5.68
1020 1056 0.914417 AGGAAGGAAATGGGAGCCGA 60.914 55.000 0.00 0.00 0.00 5.54
1022 1058 3.382083 TTAAGGAAGGAAATGGGAGCC 57.618 47.619 0.00 0.00 0.00 4.70
1308 1409 1.112113 AGATGAGGTACACGGCGAAT 58.888 50.000 16.62 2.87 0.00 3.34
1461 1562 1.448717 GCTGGAGAAGGAGGCGTTC 60.449 63.158 0.00 0.00 0.00 3.95
2089 2226 7.488150 CCATACGCAATATATGTACTGTACAGG 59.512 40.741 26.12 11.82 42.77 4.00
2124 2269 4.257731 GGAAGGAGATGGAGTTGAACTTC 58.742 47.826 0.00 0.00 34.04 3.01
2167 2312 9.737427 CACAACTCGATCTCAAGTAGTAATAAT 57.263 33.333 0.00 0.00 0.00 1.28
2174 2326 4.169508 CACCACAACTCGATCTCAAGTAG 58.830 47.826 0.00 0.00 0.00 2.57
2198 2350 3.531538 TCTGTGCTTCTTTCACGAAGTT 58.468 40.909 0.00 0.00 41.61 2.66
2206 2365 8.400947 TGCATCTTAATAATCTGTGCTTCTTTC 58.599 33.333 0.00 0.00 32.67 2.62
2215 2374 3.185188 CGCGCTGCATCTTAATAATCTGT 59.815 43.478 5.56 0.00 0.00 3.41
2235 2394 5.377358 CGACAATTCTCATTGGATTATCGC 58.623 41.667 0.31 0.00 43.82 4.58
2252 2447 2.290260 TGATGGCTTCAGAACCGACAAT 60.290 45.455 0.00 0.00 0.00 2.71
2284 2479 2.736719 CGGATGGCTACTCACAAGTCAG 60.737 54.545 0.00 0.00 36.92 3.51
2297 2492 2.270205 CAGCTCAACCGGATGGCT 59.730 61.111 17.81 17.81 39.70 4.75
2301 2496 0.976641 TTCAGTCAGCTCAACCGGAT 59.023 50.000 9.46 0.00 0.00 4.18
2307 2502 5.827797 AGGTTAATTTGTTCAGTCAGCTCAA 59.172 36.000 0.00 0.00 0.00 3.02
2309 2504 5.470098 TCAGGTTAATTTGTTCAGTCAGCTC 59.530 40.000 0.00 0.00 0.00 4.09
2353 2548 9.905713 TTGGTGATACTAAGAAAGAAATGCTAT 57.094 29.630 0.00 0.00 0.00 2.97
2385 2580 5.973899 TGGCAATGCTTTTACATGAAGTA 57.026 34.783 4.82 0.00 0.00 2.24
2386 2581 4.870123 TGGCAATGCTTTTACATGAAGT 57.130 36.364 4.82 0.00 0.00 3.01
2395 2590 3.745458 CACGGTAAATTGGCAATGCTTTT 59.255 39.130 14.47 7.60 0.00 2.27
2417 2612 1.749634 TCTTTAGGAGGAGCGTGCTAC 59.250 52.381 0.00 0.00 0.00 3.58
2430 2625 5.649395 TCAGATTGTGCCTTTGATCTTTAGG 59.351 40.000 0.00 0.00 0.00 2.69
2433 2628 6.350780 GGATTCAGATTGTGCCTTTGATCTTT 60.351 38.462 0.00 0.00 0.00 2.52
2436 2631 4.202090 GGGATTCAGATTGTGCCTTTGATC 60.202 45.833 0.00 0.00 0.00 2.92
2437 2632 3.703052 GGGATTCAGATTGTGCCTTTGAT 59.297 43.478 0.00 0.00 0.00 2.57
2438 2633 3.091545 GGGATTCAGATTGTGCCTTTGA 58.908 45.455 0.00 0.00 0.00 2.69
2439 2634 2.167075 GGGGATTCAGATTGTGCCTTTG 59.833 50.000 0.00 0.00 0.00 2.77
2443 2638 1.064463 TCAGGGGATTCAGATTGTGCC 60.064 52.381 0.00 0.00 0.00 5.01
2464 2659 9.369904 GGATGTTTATTAACTACGGTTACTTCA 57.630 33.333 0.00 0.00 37.61 3.02
2474 2669 9.005777 TGTTTCACCAGGATGTTTATTAACTAC 57.994 33.333 0.00 0.00 35.24 2.73
2475 2670 9.226606 CTGTTTCACCAGGATGTTTATTAACTA 57.773 33.333 0.00 0.00 35.24 2.24
2476 2671 8.110860 CTGTTTCACCAGGATGTTTATTAACT 57.889 34.615 0.00 0.00 35.24 2.24
2490 2685 2.358898 CACTTGGTTCCTGTTTCACCAG 59.641 50.000 0.00 0.00 41.65 4.00
2491 2686 2.374184 CACTTGGTTCCTGTTTCACCA 58.626 47.619 0.00 0.00 38.89 4.17
2492 2687 1.681264 CCACTTGGTTCCTGTTTCACC 59.319 52.381 0.00 0.00 0.00 4.02
2493 2688 1.067060 GCCACTTGGTTCCTGTTTCAC 59.933 52.381 0.00 0.00 37.57 3.18
2494 2689 1.398692 GCCACTTGGTTCCTGTTTCA 58.601 50.000 0.00 0.00 37.57 2.69
2495 2690 0.310854 CGCCACTTGGTTCCTGTTTC 59.689 55.000 0.00 0.00 37.57 2.78
2496 2691 0.106918 TCGCCACTTGGTTCCTGTTT 60.107 50.000 0.00 0.00 37.57 2.83
2497 2692 0.818040 GTCGCCACTTGGTTCCTGTT 60.818 55.000 0.00 0.00 37.57 3.16
2498 2693 1.227853 GTCGCCACTTGGTTCCTGT 60.228 57.895 0.00 0.00 37.57 4.00
2499 2694 0.606401 ATGTCGCCACTTGGTTCCTG 60.606 55.000 0.00 0.00 37.57 3.86
2500 2695 0.606401 CATGTCGCCACTTGGTTCCT 60.606 55.000 0.00 0.00 37.57 3.36
2501 2696 0.889186 ACATGTCGCCACTTGGTTCC 60.889 55.000 0.00 0.00 37.57 3.62
2502 2697 0.951558 AACATGTCGCCACTTGGTTC 59.048 50.000 0.00 0.00 37.57 3.62
2503 2698 1.398692 AAACATGTCGCCACTTGGTT 58.601 45.000 0.00 0.00 33.73 3.67
2504 2699 1.398692 AAAACATGTCGCCACTTGGT 58.601 45.000 0.00 0.00 37.57 3.67
2505 2700 2.507339 AAAAACATGTCGCCACTTGG 57.493 45.000 0.00 0.00 32.96 3.61
2544 2739 3.764160 GATGCAGAGGCCGGGGAAG 62.764 68.421 2.18 0.00 40.13 3.46
2545 2740 3.797353 GATGCAGAGGCCGGGGAA 61.797 66.667 2.18 0.00 40.13 3.97
2547 2742 4.559063 CTGATGCAGAGGCCGGGG 62.559 72.222 2.18 0.00 40.13 5.73
2549 2744 4.478371 TGCTGATGCAGAGGCCGG 62.478 66.667 0.00 0.00 45.31 6.13
2560 2755 1.162698 GCCGTATGCATCATGCTGAT 58.837 50.000 11.84 0.00 45.31 2.90
2561 2756 0.886043 GGCCGTATGCATCATGCTGA 60.886 55.000 11.84 0.00 45.31 4.26
2562 2757 1.167781 TGGCCGTATGCATCATGCTG 61.168 55.000 11.84 0.00 45.31 4.41
2563 2758 0.251033 ATGGCCGTATGCATCATGCT 60.251 50.000 11.84 0.00 45.31 3.79
2564 2759 0.169672 GATGGCCGTATGCATCATGC 59.830 55.000 0.19 1.35 45.29 4.06
2565 2760 1.817357 AGATGGCCGTATGCATCATG 58.183 50.000 0.19 0.00 43.89 3.07
2566 2761 2.574006 AAGATGGCCGTATGCATCAT 57.426 45.000 0.19 0.00 43.89 2.45
2567 2762 3.701205 ATAAGATGGCCGTATGCATCA 57.299 42.857 0.19 0.00 43.89 3.07
2568 2763 5.447818 GCTTAATAAGATGGCCGTATGCATC 60.448 44.000 0.19 0.00 43.89 3.91
2569 2764 4.396166 GCTTAATAAGATGGCCGTATGCAT 59.604 41.667 3.79 3.79 43.89 3.96
2570 2765 3.751175 GCTTAATAAGATGGCCGTATGCA 59.249 43.478 3.88 0.00 43.89 3.96
2571 2766 3.751175 TGCTTAATAAGATGGCCGTATGC 59.249 43.478 3.88 0.00 40.16 3.14
2572 2767 7.609760 TTATGCTTAATAAGATGGCCGTATG 57.390 36.000 3.88 0.00 0.00 2.39
2573 2768 8.630054 TTTTATGCTTAATAAGATGGCCGTAT 57.370 30.769 3.88 0.00 32.30 3.06
2574 2769 8.630054 ATTTTATGCTTAATAAGATGGCCGTA 57.370 30.769 3.88 0.00 32.30 4.02
2575 2770 6.952773 TTTTATGCTTAATAAGATGGCCGT 57.047 33.333 0.00 0.00 32.30 5.68
2576 2771 8.730680 ACTATTTTATGCTTAATAAGATGGCCG 58.269 33.333 3.88 0.00 30.98 6.13
2589 2784 8.184192 CGAGATTTTGTGGACTATTTTATGCTT 58.816 33.333 0.00 0.00 0.00 3.91
2590 2785 7.552687 TCGAGATTTTGTGGACTATTTTATGCT 59.447 33.333 0.00 0.00 0.00 3.79
2591 2786 7.693952 TCGAGATTTTGTGGACTATTTTATGC 58.306 34.615 0.00 0.00 0.00 3.14
2592 2787 9.708222 CTTCGAGATTTTGTGGACTATTTTATG 57.292 33.333 0.00 0.00 0.00 1.90
2593 2788 9.449719 ACTTCGAGATTTTGTGGACTATTTTAT 57.550 29.630 0.00 0.00 0.00 1.40
2594 2789 8.842358 ACTTCGAGATTTTGTGGACTATTTTA 57.158 30.769 0.00 0.00 0.00 1.52
2595 2790 7.661847 AGACTTCGAGATTTTGTGGACTATTTT 59.338 33.333 0.00 0.00 0.00 1.82
2596 2791 7.162082 AGACTTCGAGATTTTGTGGACTATTT 58.838 34.615 0.00 0.00 0.00 1.40
2597 2792 6.702329 AGACTTCGAGATTTTGTGGACTATT 58.298 36.000 0.00 0.00 0.00 1.73
2598 2793 6.071334 TGAGACTTCGAGATTTTGTGGACTAT 60.071 38.462 0.00 0.00 0.00 2.12
2599 2794 5.243060 TGAGACTTCGAGATTTTGTGGACTA 59.757 40.000 0.00 0.00 0.00 2.59
2600 2795 4.039245 TGAGACTTCGAGATTTTGTGGACT 59.961 41.667 0.00 0.00 0.00 3.85
2601 2796 4.307432 TGAGACTTCGAGATTTTGTGGAC 58.693 43.478 0.00 0.00 0.00 4.02
2602 2797 4.600692 TGAGACTTCGAGATTTTGTGGA 57.399 40.909 0.00 0.00 0.00 4.02
2603 2798 4.153117 CCTTGAGACTTCGAGATTTTGTGG 59.847 45.833 0.00 0.00 37.04 4.17
2604 2799 4.752101 ACCTTGAGACTTCGAGATTTTGTG 59.248 41.667 0.00 0.00 37.04 3.33
2605 2800 4.962155 ACCTTGAGACTTCGAGATTTTGT 58.038 39.130 0.00 0.00 37.04 2.83
2606 2801 5.237344 ACAACCTTGAGACTTCGAGATTTTG 59.763 40.000 0.00 0.00 37.04 2.44
2607 2802 5.368989 ACAACCTTGAGACTTCGAGATTTT 58.631 37.500 0.00 0.00 37.04 1.82
2608 2803 4.962155 ACAACCTTGAGACTTCGAGATTT 58.038 39.130 0.00 0.00 37.04 2.17
2609 2804 4.039245 TGACAACCTTGAGACTTCGAGATT 59.961 41.667 0.00 0.00 37.04 2.40
2610 2805 3.574396 TGACAACCTTGAGACTTCGAGAT 59.426 43.478 0.00 0.00 37.04 2.75
2611 2806 2.956333 TGACAACCTTGAGACTTCGAGA 59.044 45.455 0.00 0.00 37.04 4.04
2612 2807 3.371102 TGACAACCTTGAGACTTCGAG 57.629 47.619 0.00 0.00 35.00 4.04
2613 2808 3.118920 TGTTGACAACCTTGAGACTTCGA 60.119 43.478 15.59 0.00 0.00 3.71
2614 2809 3.194861 TGTTGACAACCTTGAGACTTCG 58.805 45.455 15.59 0.00 0.00 3.79
2615 2810 4.876107 TCTTGTTGACAACCTTGAGACTTC 59.124 41.667 15.59 0.00 0.00 3.01
2616 2811 4.843728 TCTTGTTGACAACCTTGAGACTT 58.156 39.130 15.59 0.00 0.00 3.01
2617 2812 4.487714 TCTTGTTGACAACCTTGAGACT 57.512 40.909 15.59 0.00 0.00 3.24
2618 2813 5.560966 TTTCTTGTTGACAACCTTGAGAC 57.439 39.130 15.59 0.00 0.00 3.36
2619 2814 5.710099 ACTTTTCTTGTTGACAACCTTGAGA 59.290 36.000 15.59 10.37 0.00 3.27
2620 2815 5.954335 ACTTTTCTTGTTGACAACCTTGAG 58.046 37.500 15.59 8.41 0.00 3.02
2621 2816 5.975693 ACTTTTCTTGTTGACAACCTTGA 57.024 34.783 15.59 8.12 0.00 3.02
2622 2817 7.535139 TCTTACTTTTCTTGTTGACAACCTTG 58.465 34.615 15.59 6.01 0.00 3.61
2623 2818 7.696992 TCTTACTTTTCTTGTTGACAACCTT 57.303 32.000 15.59 0.00 0.00 3.50
2624 2819 7.696992 TTCTTACTTTTCTTGTTGACAACCT 57.303 32.000 15.59 0.00 0.00 3.50
2625 2820 8.751302 TTTTCTTACTTTTCTTGTTGACAACC 57.249 30.769 15.59 0.00 0.00 3.77
2626 2821 8.860128 CCTTTTCTTACTTTTCTTGTTGACAAC 58.140 33.333 11.54 11.54 0.00 3.32
2627 2822 7.544217 GCCTTTTCTTACTTTTCTTGTTGACAA 59.456 33.333 0.00 0.00 0.00 3.18
2628 2823 7.033185 GCCTTTTCTTACTTTTCTTGTTGACA 58.967 34.615 0.00 0.00 0.00 3.58
2629 2824 7.258441 AGCCTTTTCTTACTTTTCTTGTTGAC 58.742 34.615 0.00 0.00 0.00 3.18
2630 2825 7.122055 TGAGCCTTTTCTTACTTTTCTTGTTGA 59.878 33.333 0.00 0.00 0.00 3.18
2631 2826 7.220875 GTGAGCCTTTTCTTACTTTTCTTGTTG 59.779 37.037 0.00 0.00 0.00 3.33
2632 2827 7.093945 TGTGAGCCTTTTCTTACTTTTCTTGTT 60.094 33.333 0.00 0.00 0.00 2.83
2633 2828 6.377146 TGTGAGCCTTTTCTTACTTTTCTTGT 59.623 34.615 0.00 0.00 0.00 3.16
2634 2829 6.693113 GTGTGAGCCTTTTCTTACTTTTCTTG 59.307 38.462 0.00 0.00 0.00 3.02
2635 2830 6.377146 TGTGTGAGCCTTTTCTTACTTTTCTT 59.623 34.615 0.00 0.00 0.00 2.52
2636 2831 5.885912 TGTGTGAGCCTTTTCTTACTTTTCT 59.114 36.000 0.00 0.00 0.00 2.52
2637 2832 6.038271 TCTGTGTGAGCCTTTTCTTACTTTTC 59.962 38.462 0.00 0.00 0.00 2.29
2638 2833 5.885912 TCTGTGTGAGCCTTTTCTTACTTTT 59.114 36.000 0.00 0.00 0.00 2.27
2639 2834 5.437060 TCTGTGTGAGCCTTTTCTTACTTT 58.563 37.500 0.00 0.00 0.00 2.66
2640 2835 5.036117 TCTGTGTGAGCCTTTTCTTACTT 57.964 39.130 0.00 0.00 0.00 2.24
2641 2836 4.636249 CTCTGTGTGAGCCTTTTCTTACT 58.364 43.478 0.00 0.00 35.84 2.24
2642 2837 4.999751 CTCTGTGTGAGCCTTTTCTTAC 57.000 45.455 0.00 0.00 35.84 2.34
2653 2848 1.079543 CCTTCGGGCTCTGTGTGAG 60.080 63.158 0.00 0.00 45.33 3.51
2654 2849 3.059982 CCTTCGGGCTCTGTGTGA 58.940 61.111 0.00 0.00 0.00 3.58
2664 2859 2.803492 GCTTGTGTATCTAGCCTTCGGG 60.803 54.545 0.00 0.00 38.58 5.14
2665 2860 2.101582 AGCTTGTGTATCTAGCCTTCGG 59.898 50.000 0.00 0.00 43.81 4.30
2666 2861 3.444703 AGCTTGTGTATCTAGCCTTCG 57.555 47.619 0.00 0.00 43.81 3.79
2667 2862 4.303282 GCTAGCTTGTGTATCTAGCCTTC 58.697 47.826 7.70 0.00 45.70 3.46
2668 2863 4.329462 GCTAGCTTGTGTATCTAGCCTT 57.671 45.455 7.70 0.00 45.70 4.35
2672 2867 4.509600 GCTTTGGCTAGCTTGTGTATCTAG 59.490 45.833 15.72 0.00 38.15 2.43
2673 2868 4.081142 TGCTTTGGCTAGCTTGTGTATCTA 60.081 41.667 15.72 0.00 41.76 1.98
2674 2869 3.274288 GCTTTGGCTAGCTTGTGTATCT 58.726 45.455 15.72 0.00 38.15 1.98
2675 2870 3.009723 TGCTTTGGCTAGCTTGTGTATC 58.990 45.455 15.72 0.00 41.76 2.24
2676 2871 2.749621 GTGCTTTGGCTAGCTTGTGTAT 59.250 45.455 15.72 0.00 41.76 2.29
2677 2872 2.151202 GTGCTTTGGCTAGCTTGTGTA 58.849 47.619 15.72 0.04 41.76 2.90
2678 2873 0.954452 GTGCTTTGGCTAGCTTGTGT 59.046 50.000 15.72 0.00 41.76 3.72
2679 2874 1.242076 AGTGCTTTGGCTAGCTTGTG 58.758 50.000 15.72 4.44 41.76 3.33
2680 2875 1.986882 AAGTGCTTTGGCTAGCTTGT 58.013 45.000 15.72 0.00 41.76 3.16
2681 2876 4.635765 TGTATAAGTGCTTTGGCTAGCTTG 59.364 41.667 15.72 3.73 41.76 4.01
2682 2877 4.843728 TGTATAAGTGCTTTGGCTAGCTT 58.156 39.130 15.72 0.47 41.76 3.74
2683 2878 4.487714 TGTATAAGTGCTTTGGCTAGCT 57.512 40.909 15.72 0.00 41.76 3.32
2684 2879 4.816385 TGATGTATAAGTGCTTTGGCTAGC 59.184 41.667 6.04 6.04 41.59 3.42
2685 2880 5.817296 TGTGATGTATAAGTGCTTTGGCTAG 59.183 40.000 0.00 0.00 39.59 3.42
2686 2881 5.739959 TGTGATGTATAAGTGCTTTGGCTA 58.260 37.500 0.00 0.00 39.59 3.93
2687 2882 4.588899 TGTGATGTATAAGTGCTTTGGCT 58.411 39.130 0.00 0.00 39.59 4.75
2688 2883 4.731773 GCTGTGATGTATAAGTGCTTTGGC 60.732 45.833 0.00 0.00 39.26 4.52
2689 2884 4.201950 GGCTGTGATGTATAAGTGCTTTGG 60.202 45.833 0.00 0.00 0.00 3.28
2690 2885 4.494690 CGGCTGTGATGTATAAGTGCTTTG 60.495 45.833 0.00 0.00 0.00 2.77
2691 2886 3.623060 CGGCTGTGATGTATAAGTGCTTT 59.377 43.478 0.00 0.00 0.00 3.51
2692 2887 3.198068 CGGCTGTGATGTATAAGTGCTT 58.802 45.455 0.00 0.00 0.00 3.91
2693 2888 2.168521 ACGGCTGTGATGTATAAGTGCT 59.831 45.455 0.00 0.00 0.00 4.40
2694 2889 2.550978 ACGGCTGTGATGTATAAGTGC 58.449 47.619 0.00 0.00 0.00 4.40
2695 2890 4.201812 CCAAACGGCTGTGATGTATAAGTG 60.202 45.833 0.00 0.00 0.00 3.16
2696 2891 3.938963 CCAAACGGCTGTGATGTATAAGT 59.061 43.478 0.00 0.00 0.00 2.24
2697 2892 3.242739 GCCAAACGGCTGTGATGTATAAG 60.243 47.826 0.00 0.00 46.85 1.73
2698 2893 2.680841 GCCAAACGGCTGTGATGTATAA 59.319 45.455 0.00 0.00 46.85 0.98
2699 2894 2.285083 GCCAAACGGCTGTGATGTATA 58.715 47.619 0.00 0.00 46.85 1.47
2700 2895 1.094785 GCCAAACGGCTGTGATGTAT 58.905 50.000 0.00 0.00 46.85 2.29
2701 2896 2.550487 GCCAAACGGCTGTGATGTA 58.450 52.632 0.00 0.00 46.85 2.29
2702 2897 3.354678 GCCAAACGGCTGTGATGT 58.645 55.556 0.00 0.00 46.85 3.06
2711 2906 2.817258 TGTCTATTTTGGAGCCAAACGG 59.183 45.455 13.90 7.67 44.39 4.44
2712 2907 3.119849 CCTGTCTATTTTGGAGCCAAACG 60.120 47.826 13.90 6.51 44.39 3.60
2713 2908 3.826729 ACCTGTCTATTTTGGAGCCAAAC 59.173 43.478 13.90 4.37 44.39 2.93
2714 2909 4.112634 ACCTGTCTATTTTGGAGCCAAA 57.887 40.909 10.49 10.49 43.23 3.28
2715 2910 3.806949 ACCTGTCTATTTTGGAGCCAA 57.193 42.857 0.00 0.00 0.00 4.52
2716 2911 4.919774 TTACCTGTCTATTTTGGAGCCA 57.080 40.909 0.00 0.00 0.00 4.75
2717 2912 5.254115 AGTTTACCTGTCTATTTTGGAGCC 58.746 41.667 0.00 0.00 0.00 4.70
2718 2913 7.916914 TTAGTTTACCTGTCTATTTTGGAGC 57.083 36.000 0.00 0.00 0.00 4.70
2720 2915 8.736244 GCAATTAGTTTACCTGTCTATTTTGGA 58.264 33.333 0.00 0.00 0.00 3.53
2721 2916 7.973944 GGCAATTAGTTTACCTGTCTATTTTGG 59.026 37.037 0.00 0.00 0.00 3.28
2722 2917 8.739972 AGGCAATTAGTTTACCTGTCTATTTTG 58.260 33.333 0.00 0.00 0.00 2.44
2723 2918 8.879427 AGGCAATTAGTTTACCTGTCTATTTT 57.121 30.769 0.00 0.00 0.00 1.82
2725 2920 9.780186 GATAGGCAATTAGTTTACCTGTCTATT 57.220 33.333 0.00 0.00 35.59 1.73
2726 2921 8.376270 GGATAGGCAATTAGTTTACCTGTCTAT 58.624 37.037 11.02 0.00 37.57 1.98
2727 2922 7.567622 AGGATAGGCAATTAGTTTACCTGTCTA 59.432 37.037 11.02 0.00 38.35 2.59
2728 2923 6.387220 AGGATAGGCAATTAGTTTACCTGTCT 59.613 38.462 11.02 0.00 38.35 3.41
2729 2924 6.483640 CAGGATAGGCAATTAGTTTACCTGTC 59.516 42.308 0.00 0.00 37.77 3.51
2730 2925 6.069615 ACAGGATAGGCAATTAGTTTACCTGT 60.070 38.462 0.00 0.00 45.88 4.00
2731 2926 6.357367 ACAGGATAGGCAATTAGTTTACCTG 58.643 40.000 0.00 0.00 44.25 4.00
2732 2927 6.576778 ACAGGATAGGCAATTAGTTTACCT 57.423 37.500 0.00 0.00 34.42 3.08
2733 2928 7.771826 TGTAACAGGATAGGCAATTAGTTTACC 59.228 37.037 0.00 0.00 0.00 2.85
2734 2929 8.610035 GTGTAACAGGATAGGCAATTAGTTTAC 58.390 37.037 0.00 0.00 36.32 2.01
2735 2930 7.493320 CGTGTAACAGGATAGGCAATTAGTTTA 59.507 37.037 0.00 0.00 35.74 2.01
2736 2931 6.315393 CGTGTAACAGGATAGGCAATTAGTTT 59.685 38.462 0.00 0.00 35.74 2.66
2737 2932 5.815740 CGTGTAACAGGATAGGCAATTAGTT 59.184 40.000 0.00 0.00 35.74 2.24
2738 2933 5.128171 TCGTGTAACAGGATAGGCAATTAGT 59.872 40.000 0.00 0.00 35.74 2.24
2739 2934 5.462398 GTCGTGTAACAGGATAGGCAATTAG 59.538 44.000 0.00 0.00 35.74 1.73
2740 2935 5.353938 GTCGTGTAACAGGATAGGCAATTA 58.646 41.667 0.00 0.00 35.74 1.40
2741 2936 4.189231 GTCGTGTAACAGGATAGGCAATT 58.811 43.478 0.00 0.00 35.74 2.32
2742 2937 3.431766 GGTCGTGTAACAGGATAGGCAAT 60.432 47.826 0.00 0.00 35.74 3.56
2743 2938 2.093869 GGTCGTGTAACAGGATAGGCAA 60.094 50.000 0.00 0.00 35.74 4.52
2744 2939 1.479323 GGTCGTGTAACAGGATAGGCA 59.521 52.381 0.00 0.00 35.74 4.75
2745 2940 1.535437 CGGTCGTGTAACAGGATAGGC 60.535 57.143 0.00 0.00 35.74 3.93
2746 2941 1.535437 GCGGTCGTGTAACAGGATAGG 60.535 57.143 0.00 0.00 35.74 2.57
2747 2942 1.535437 GGCGGTCGTGTAACAGGATAG 60.535 57.143 0.00 0.00 35.74 2.08
2748 2943 0.457035 GGCGGTCGTGTAACAGGATA 59.543 55.000 0.00 0.00 35.74 2.59
2749 2944 1.217244 GGCGGTCGTGTAACAGGAT 59.783 57.895 0.00 0.00 35.74 3.24
2750 2945 1.537814 ATGGCGGTCGTGTAACAGGA 61.538 55.000 0.00 0.00 35.74 3.86
2751 2946 1.079405 ATGGCGGTCGTGTAACAGG 60.079 57.895 0.00 0.00 35.74 4.00
2752 2947 1.082117 GGATGGCGGTCGTGTAACAG 61.082 60.000 0.00 0.00 35.74 3.16
2753 2948 1.079681 GGATGGCGGTCGTGTAACA 60.080 57.895 0.00 0.00 35.74 2.41
2754 2949 0.671163 TTGGATGGCGGTCGTGTAAC 60.671 55.000 0.00 0.00 0.00 2.50
2755 2950 0.035036 TTTGGATGGCGGTCGTGTAA 59.965 50.000 0.00 0.00 0.00 2.41
2756 2951 0.671163 GTTTGGATGGCGGTCGTGTA 60.671 55.000 0.00 0.00 0.00 2.90
2757 2952 1.964373 GTTTGGATGGCGGTCGTGT 60.964 57.895 0.00 0.00 0.00 4.49
2758 2953 2.686816 GGTTTGGATGGCGGTCGTG 61.687 63.158 0.00 0.00 0.00 4.35
2759 2954 2.359478 GGTTTGGATGGCGGTCGT 60.359 61.111 0.00 0.00 0.00 4.34
2760 2955 3.496131 CGGTTTGGATGGCGGTCG 61.496 66.667 0.00 0.00 0.00 4.79
2761 2956 3.131478 CCGGTTTGGATGGCGGTC 61.131 66.667 0.00 0.00 42.00 4.79
2768 2963 4.567747 GGGATATATTCAGCCGGTTTGGAT 60.568 45.833 1.90 5.17 42.00 3.41
2769 2964 3.244770 GGGATATATTCAGCCGGTTTGGA 60.245 47.826 1.90 0.00 42.00 3.53
2770 2965 3.081804 GGGATATATTCAGCCGGTTTGG 58.918 50.000 1.90 0.00 42.50 3.28
2771 2966 2.742053 CGGGATATATTCAGCCGGTTTG 59.258 50.000 1.90 2.01 0.00 2.93
2772 2967 2.635915 TCGGGATATATTCAGCCGGTTT 59.364 45.455 1.90 0.00 32.05 3.27
2773 2968 2.233922 CTCGGGATATATTCAGCCGGTT 59.766 50.000 1.90 0.00 32.05 4.44
2774 2969 1.825474 CTCGGGATATATTCAGCCGGT 59.175 52.381 1.90 0.00 32.05 5.28
2775 2970 1.471676 GCTCGGGATATATTCAGCCGG 60.472 57.143 0.00 0.00 32.05 6.13
2776 2971 1.478510 AGCTCGGGATATATTCAGCCG 59.521 52.381 0.00 0.00 32.31 5.52
2777 2972 3.181474 GGTAGCTCGGGATATATTCAGCC 60.181 52.174 0.00 0.00 0.00 4.85
2778 2973 3.447586 TGGTAGCTCGGGATATATTCAGC 59.552 47.826 0.00 0.00 0.00 4.26
2779 2974 5.596361 AGATGGTAGCTCGGGATATATTCAG 59.404 44.000 0.00 0.00 0.00 3.02
2780 2975 5.519808 AGATGGTAGCTCGGGATATATTCA 58.480 41.667 0.00 0.00 0.00 2.57
2781 2976 5.010213 GGAGATGGTAGCTCGGGATATATTC 59.990 48.000 0.00 0.00 33.19 1.75
2782 2977 4.896482 GGAGATGGTAGCTCGGGATATATT 59.104 45.833 0.00 0.00 33.19 1.28
2783 2978 4.475345 GGAGATGGTAGCTCGGGATATAT 58.525 47.826 0.00 0.00 33.19 0.86
2784 2979 3.372784 GGGAGATGGTAGCTCGGGATATA 60.373 52.174 0.00 0.00 33.19 0.86
2785 2980 2.624557 GGGAGATGGTAGCTCGGGATAT 60.625 54.545 0.00 0.00 33.19 1.63
2786 2981 1.272536 GGGAGATGGTAGCTCGGGATA 60.273 57.143 0.00 0.00 33.19 2.59
2787 2982 0.543174 GGGAGATGGTAGCTCGGGAT 60.543 60.000 0.00 0.00 33.19 3.85
2788 2983 1.152525 GGGAGATGGTAGCTCGGGA 60.153 63.158 0.00 0.00 33.19 5.14
2789 2984 0.833834 ATGGGAGATGGTAGCTCGGG 60.834 60.000 0.00 0.00 33.19 5.14
2790 2985 0.605589 GATGGGAGATGGTAGCTCGG 59.394 60.000 0.00 0.00 33.19 4.63
2791 2986 0.242286 CGATGGGAGATGGTAGCTCG 59.758 60.000 0.00 0.00 33.19 5.03
2792 2987 0.605589 CCGATGGGAGATGGTAGCTC 59.394 60.000 0.00 0.00 34.06 4.09
2793 2988 0.188587 TCCGATGGGAGATGGTAGCT 59.811 55.000 0.00 0.00 37.43 3.32
2794 2989 2.746697 TCCGATGGGAGATGGTAGC 58.253 57.895 0.00 0.00 37.43 3.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.