Multiple sequence alignment - TraesCS7B01G307800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G307800 chr7B 100.000 3792 0 0 1 3792 551896223 551900014 0.000000e+00 7003
1 TraesCS7B01G307800 chr7B 90.683 2050 107 41 872 2864 551538823 551540845 0.000000e+00 2651
2 TraesCS7B01G307800 chr7B 94.389 303 15 2 567 868 426531509 426531208 7.420000e-127 464
3 TraesCS7B01G307800 chr7B 93.729 303 17 2 568 869 29238011 29237710 1.610000e-123 453
4 TraesCS7B01G307800 chr7B 93.464 306 17 3 564 867 426524052 426524356 5.780000e-123 451
5 TraesCS7B01G307800 chr7B 93.182 308 17 4 564 869 529283492 529283797 2.080000e-122 449
6 TraesCS7B01G307800 chr7D 90.249 2369 154 39 862 3183 518573494 518575832 0.000000e+00 3024
7 TraesCS7B01G307800 chr7D 94.180 1615 76 14 969 2575 518091225 518089621 0.000000e+00 2446
8 TraesCS7B01G307800 chr7D 89.774 841 44 21 1977 2792 518558394 518559217 0.000000e+00 1038
9 TraesCS7B01G307800 chr7D 89.039 812 43 18 2011 2792 518602073 518602868 0.000000e+00 965
10 TraesCS7B01G307800 chr7D 94.380 605 33 1 3189 3792 20005044 20004440 0.000000e+00 928
11 TraesCS7B01G307800 chr7D 89.046 283 22 7 121 398 518569127 518569405 3.630000e-90 342
12 TraesCS7B01G307800 chr7D 87.365 277 27 6 123 395 518614512 518614784 1.020000e-80 311
13 TraesCS7B01G307800 chr7D 95.484 155 4 3 392 543 518573324 518573478 1.050000e-60 244
14 TraesCS7B01G307800 chr7D 95.181 83 3 1 385 466 518616295 518616377 3.070000e-26 130
15 TraesCS7B01G307800 chr7A 91.217 1742 91 28 871 2583 593016252 593014544 0.000000e+00 2313
16 TraesCS7B01G307800 chr7A 91.072 1725 101 33 930 2623 593376193 593377895 0.000000e+00 2283
17 TraesCS7B01G307800 chr7A 91.870 123 10 0 2 124 593381336 593381458 5.040000e-39 172
18 TraesCS7B01G307800 chr7A 91.262 103 8 1 117 218 593381614 593381716 5.110000e-29 139
19 TraesCS7B01G307800 chr1B 94.702 604 32 0 3189 3792 56996320 56995717 0.000000e+00 939
20 TraesCS7B01G307800 chr2D 94.380 605 33 1 3189 3792 570984318 570983714 0.000000e+00 928
21 TraesCS7B01G307800 chr2D 95.333 300 14 0 568 867 628155119 628155418 9.530000e-131 477
22 TraesCS7B01G307800 chr1D 94.050 605 35 1 3189 3792 11317380 11317984 0.000000e+00 917
23 TraesCS7B01G307800 chr1D 93.453 611 38 2 3184 3792 25673723 25674333 0.000000e+00 905
24 TraesCS7B01G307800 chr1D 78.612 1426 246 42 1152 2540 10936437 10935034 0.000000e+00 889
25 TraesCS7B01G307800 chr5D 93.719 605 37 1 3189 3792 398616398 398615794 0.000000e+00 905
26 TraesCS7B01G307800 chr5D 93.729 606 33 4 3189 3792 515270336 515269734 0.000000e+00 904
27 TraesCS7B01G307800 chr4A 93.719 605 37 1 3189 3792 41115819 41116423 0.000000e+00 905
28 TraesCS7B01G307800 chr1A 93.719 605 37 1 3189 3792 583330242 583329638 0.000000e+00 905
29 TraesCS7B01G307800 chr3B 83.462 647 98 8 1906 2547 712559071 712559713 9.070000e-166 593
30 TraesCS7B01G307800 chr6B 95.667 300 13 0 564 863 512249825 512249526 2.050000e-132 483
31 TraesCS7B01G307800 chr6B 93.750 304 16 3 564 866 538068040 538067739 1.610000e-123 453
32 TraesCS7B01G307800 chr6B 93.421 304 20 0 567 870 348923128 348923431 5.780000e-123 451
33 TraesCS7B01G307800 chr4B 94.352 301 15 2 568 867 400402920 400403219 9.600000e-126 460


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G307800 chr7B 551896223 551900014 3791 False 7003.000000 7003 100.000000 1 3792 1 chr7B.!!$F4 3791
1 TraesCS7B01G307800 chr7B 551538823 551540845 2022 False 2651.000000 2651 90.683000 872 2864 1 chr7B.!!$F3 1992
2 TraesCS7B01G307800 chr7D 518089621 518091225 1604 True 2446.000000 2446 94.180000 969 2575 1 chr7D.!!$R2 1606
3 TraesCS7B01G307800 chr7D 518569127 518575832 6705 False 1203.333333 3024 91.593000 121 3183 3 chr7D.!!$F3 3062
4 TraesCS7B01G307800 chr7D 518558394 518559217 823 False 1038.000000 1038 89.774000 1977 2792 1 chr7D.!!$F1 815
5 TraesCS7B01G307800 chr7D 518602073 518602868 795 False 965.000000 965 89.039000 2011 2792 1 chr7D.!!$F2 781
6 TraesCS7B01G307800 chr7D 20004440 20005044 604 True 928.000000 928 94.380000 3189 3792 1 chr7D.!!$R1 603
7 TraesCS7B01G307800 chr7D 518614512 518616377 1865 False 220.500000 311 91.273000 123 466 2 chr7D.!!$F4 343
8 TraesCS7B01G307800 chr7A 593014544 593016252 1708 True 2313.000000 2313 91.217000 871 2583 1 chr7A.!!$R1 1712
9 TraesCS7B01G307800 chr7A 593376193 593381716 5523 False 864.666667 2283 91.401333 2 2623 3 chr7A.!!$F1 2621
10 TraesCS7B01G307800 chr1B 56995717 56996320 603 True 939.000000 939 94.702000 3189 3792 1 chr1B.!!$R1 603
11 TraesCS7B01G307800 chr2D 570983714 570984318 604 True 928.000000 928 94.380000 3189 3792 1 chr2D.!!$R1 603
12 TraesCS7B01G307800 chr1D 11317380 11317984 604 False 917.000000 917 94.050000 3189 3792 1 chr1D.!!$F1 603
13 TraesCS7B01G307800 chr1D 25673723 25674333 610 False 905.000000 905 93.453000 3184 3792 1 chr1D.!!$F2 608
14 TraesCS7B01G307800 chr1D 10935034 10936437 1403 True 889.000000 889 78.612000 1152 2540 1 chr1D.!!$R1 1388
15 TraesCS7B01G307800 chr5D 398615794 398616398 604 True 905.000000 905 93.719000 3189 3792 1 chr5D.!!$R1 603
16 TraesCS7B01G307800 chr5D 515269734 515270336 602 True 904.000000 904 93.729000 3189 3792 1 chr5D.!!$R2 603
17 TraesCS7B01G307800 chr4A 41115819 41116423 604 False 905.000000 905 93.719000 3189 3792 1 chr4A.!!$F1 603
18 TraesCS7B01G307800 chr1A 583329638 583330242 604 True 905.000000 905 93.719000 3189 3792 1 chr1A.!!$R1 603
19 TraesCS7B01G307800 chr3B 712559071 712559713 642 False 593.000000 593 83.462000 1906 2547 1 chr3B.!!$F1 641

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
19 20 0.036010 AGGAACCGCCAAGATCTGTG 60.036 55.0 0.00 0.00 40.02 3.66 F
28 29 0.036952 CAAGATCTGTGGTGACGGCT 60.037 55.0 0.00 0.00 0.00 5.52 F
31 32 0.037326 GATCTGTGGTGACGGCTTCA 60.037 55.0 0.00 0.00 0.00 3.02 F
102 103 0.039888 TCGCTTGATTGTCGACACGA 60.040 50.0 19.90 19.31 0.00 4.35 F
529 5384 0.169230 TTGTTTTTGTGTGAGCGCGT 59.831 45.0 8.43 0.00 0.00 6.01 F
579 5434 0.179012 AGCTAGCTACTCCCTCCGTC 60.179 60.0 17.69 0.00 0.00 4.79 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1675 6603 1.021390 AAACGCTGCCCGAAGATGAG 61.021 55.000 0.61 0.0 41.02 2.90 R
2575 7512 2.863401 TGTACGCTGCCTGTACATAG 57.137 50.000 14.01 0.0 45.24 2.23 R
2588 7526 2.318578 TGCTTTGTAGTACGTGTACGC 58.681 47.619 0.00 0.0 44.43 4.42 R
2592 7530 4.796830 CGATGTATGCTTTGTAGTACGTGT 59.203 41.667 0.00 0.0 0.00 4.49 R
2704 7676 0.175989 TTCTACACACCACGCACACA 59.824 50.000 0.00 0.0 0.00 3.72 R
2933 8266 0.249911 AGGAGTGGTTGTTGTCGCTC 60.250 55.000 0.00 0.0 39.15 5.03 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 2.377136 AGGAACCGCCAAGATCTGT 58.623 52.632 0.00 0.00 40.02 3.41
19 20 0.036010 AGGAACCGCCAAGATCTGTG 60.036 55.000 0.00 0.00 40.02 3.66
20 21 1.026718 GGAACCGCCAAGATCTGTGG 61.027 60.000 15.63 15.63 39.33 4.17
21 22 0.321653 GAACCGCCAAGATCTGTGGT 60.322 55.000 19.00 15.75 38.50 4.16
22 23 0.606401 AACCGCCAAGATCTGTGGTG 60.606 55.000 16.65 19.25 44.71 4.17
25 26 2.460330 GCCAAGATCTGTGGTGACG 58.540 57.895 19.00 0.00 38.50 4.35
26 27 1.021390 GCCAAGATCTGTGGTGACGG 61.021 60.000 19.00 4.06 38.50 4.79
27 28 1.021390 CCAAGATCTGTGGTGACGGC 61.021 60.000 13.02 0.00 0.00 5.68
28 29 0.036952 CAAGATCTGTGGTGACGGCT 60.037 55.000 0.00 0.00 0.00 5.52
29 30 0.687354 AAGATCTGTGGTGACGGCTT 59.313 50.000 0.00 0.00 0.00 4.35
30 31 0.247736 AGATCTGTGGTGACGGCTTC 59.752 55.000 0.00 0.00 0.00 3.86
31 32 0.037326 GATCTGTGGTGACGGCTTCA 60.037 55.000 0.00 0.00 0.00 3.02
32 33 0.615331 ATCTGTGGTGACGGCTTCAT 59.385 50.000 0.00 0.00 36.32 2.57
33 34 0.396435 TCTGTGGTGACGGCTTCATT 59.604 50.000 0.00 0.00 36.32 2.57
34 35 1.202758 TCTGTGGTGACGGCTTCATTT 60.203 47.619 0.00 0.00 36.32 2.32
35 36 1.197721 CTGTGGTGACGGCTTCATTTC 59.802 52.381 0.00 0.00 36.32 2.17
36 37 0.521735 GTGGTGACGGCTTCATTTCC 59.478 55.000 0.00 0.00 36.32 3.13
37 38 0.400213 TGGTGACGGCTTCATTTCCT 59.600 50.000 0.00 0.00 36.32 3.36
38 39 1.202879 TGGTGACGGCTTCATTTCCTT 60.203 47.619 0.00 0.00 36.32 3.36
39 40 1.200020 GGTGACGGCTTCATTTCCTTG 59.800 52.381 0.00 0.00 36.32 3.61
40 41 1.880027 GTGACGGCTTCATTTCCTTGT 59.120 47.619 0.00 0.00 36.32 3.16
41 42 1.879380 TGACGGCTTCATTTCCTTGTG 59.121 47.619 0.00 0.00 0.00 3.33
42 43 1.200020 GACGGCTTCATTTCCTTGTGG 59.800 52.381 0.00 0.00 0.00 4.17
43 44 1.247567 CGGCTTCATTTCCTTGTGGT 58.752 50.000 0.00 0.00 34.23 4.16
44 45 1.068333 CGGCTTCATTTCCTTGTGGTG 60.068 52.381 0.00 0.00 34.23 4.17
45 46 1.273327 GGCTTCATTTCCTTGTGGTGG 59.727 52.381 0.00 0.00 34.23 4.61
46 47 2.238521 GCTTCATTTCCTTGTGGTGGA 58.761 47.619 0.00 0.00 34.23 4.02
47 48 2.229784 GCTTCATTTCCTTGTGGTGGAG 59.770 50.000 0.00 0.00 34.76 3.86
48 49 3.490348 CTTCATTTCCTTGTGGTGGAGT 58.510 45.455 0.00 0.00 34.76 3.85
49 50 4.651778 CTTCATTTCCTTGTGGTGGAGTA 58.348 43.478 0.00 0.00 34.76 2.59
50 51 4.715534 TCATTTCCTTGTGGTGGAGTAA 57.284 40.909 0.00 0.00 34.76 2.24
51 52 5.055265 TCATTTCCTTGTGGTGGAGTAAA 57.945 39.130 0.00 0.00 34.76 2.01
52 53 4.825085 TCATTTCCTTGTGGTGGAGTAAAC 59.175 41.667 0.00 0.00 34.76 2.01
53 54 4.513406 TTTCCTTGTGGTGGAGTAAACT 57.487 40.909 0.00 0.00 34.76 2.66
54 55 5.633655 TTTCCTTGTGGTGGAGTAAACTA 57.366 39.130 0.00 0.00 34.76 2.24
55 56 4.612264 TCCTTGTGGTGGAGTAAACTAC 57.388 45.455 0.00 0.00 34.23 2.73
56 57 3.968649 TCCTTGTGGTGGAGTAAACTACA 59.031 43.478 0.00 0.00 37.26 2.74
67 68 7.450124 TGGAGTAAACTACACAAACAACAAA 57.550 32.000 0.00 0.00 30.33 2.83
68 69 7.883217 TGGAGTAAACTACACAAACAACAAAA 58.117 30.769 0.00 0.00 30.33 2.44
69 70 8.524487 TGGAGTAAACTACACAAACAACAAAAT 58.476 29.630 0.00 0.00 30.33 1.82
70 71 9.361315 GGAGTAAACTACACAAACAACAAAATT 57.639 29.630 0.00 0.00 0.00 1.82
72 73 8.652463 AGTAAACTACACAAACAACAAAATTGC 58.348 29.630 0.00 0.00 0.00 3.56
73 74 7.426929 AAACTACACAAACAACAAAATTGCA 57.573 28.000 0.00 0.00 0.00 4.08
74 75 6.645700 ACTACACAAACAACAAAATTGCAG 57.354 33.333 0.00 0.00 0.00 4.41
75 76 4.339439 ACACAAACAACAAAATTGCAGC 57.661 36.364 0.00 0.00 0.00 5.25
76 77 4.002316 ACACAAACAACAAAATTGCAGCT 58.998 34.783 0.00 0.00 0.00 4.24
77 78 4.142859 ACACAAACAACAAAATTGCAGCTG 60.143 37.500 10.11 10.11 0.00 4.24
78 79 3.374678 ACAAACAACAAAATTGCAGCTGG 59.625 39.130 17.12 0.00 0.00 4.85
79 80 2.985957 ACAACAAAATTGCAGCTGGT 57.014 40.000 17.12 0.00 0.00 4.00
80 81 2.825205 ACAACAAAATTGCAGCTGGTC 58.175 42.857 17.12 0.00 0.00 4.02
81 82 2.168106 ACAACAAAATTGCAGCTGGTCA 59.832 40.909 17.12 2.40 0.00 4.02
82 83 2.514205 ACAAAATTGCAGCTGGTCAC 57.486 45.000 17.12 0.00 0.00 3.67
83 84 2.034124 ACAAAATTGCAGCTGGTCACT 58.966 42.857 17.12 0.00 0.00 3.41
84 85 2.035066 ACAAAATTGCAGCTGGTCACTC 59.965 45.455 17.12 0.00 0.00 3.51
85 86 0.877071 AAATTGCAGCTGGTCACTCG 59.123 50.000 17.12 0.00 0.00 4.18
86 87 1.580845 AATTGCAGCTGGTCACTCGC 61.581 55.000 17.12 0.00 0.00 5.03
87 88 2.460662 ATTGCAGCTGGTCACTCGCT 62.461 55.000 17.12 0.00 0.00 4.93
88 89 2.358003 GCAGCTGGTCACTCGCTT 60.358 61.111 17.12 0.00 0.00 4.68
89 90 2.675056 GCAGCTGGTCACTCGCTTG 61.675 63.158 17.12 0.00 0.00 4.01
90 91 1.005748 CAGCTGGTCACTCGCTTGA 60.006 57.895 5.57 0.00 0.00 3.02
91 92 0.390866 CAGCTGGTCACTCGCTTGAT 60.391 55.000 5.57 0.00 0.00 2.57
92 93 0.322975 AGCTGGTCACTCGCTTGATT 59.677 50.000 0.00 0.00 0.00 2.57
93 94 0.445436 GCTGGTCACTCGCTTGATTG 59.555 55.000 0.00 0.00 0.00 2.67
94 95 1.800805 CTGGTCACTCGCTTGATTGT 58.199 50.000 0.00 0.00 0.00 2.71
95 96 1.728971 CTGGTCACTCGCTTGATTGTC 59.271 52.381 0.00 0.00 0.00 3.18
96 97 0.716108 GGTCACTCGCTTGATTGTCG 59.284 55.000 0.00 0.00 0.00 4.35
97 98 1.668919 GGTCACTCGCTTGATTGTCGA 60.669 52.381 0.00 0.00 0.00 4.20
98 99 1.387084 GTCACTCGCTTGATTGTCGAC 59.613 52.381 9.11 9.11 0.00 4.20
99 100 1.000717 TCACTCGCTTGATTGTCGACA 60.001 47.619 15.76 15.76 0.00 4.35
100 101 1.125021 CACTCGCTTGATTGTCGACAC 59.875 52.381 19.90 8.62 0.00 3.67
101 102 0.363512 CTCGCTTGATTGTCGACACG 59.636 55.000 19.90 17.21 0.00 4.49
102 103 0.039888 TCGCTTGATTGTCGACACGA 60.040 50.000 19.90 19.31 0.00 4.35
103 104 0.992072 CGCTTGATTGTCGACACGAT 59.008 50.000 19.90 10.43 38.42 3.73
104 105 2.159490 TCGCTTGATTGTCGACACGATA 60.159 45.455 19.90 3.47 38.42 2.92
105 106 2.035674 CGCTTGATTGTCGACACGATAC 60.036 50.000 19.90 8.52 38.42 2.24
106 107 3.179830 GCTTGATTGTCGACACGATACT 58.820 45.455 19.90 0.00 38.42 2.12
107 108 4.348656 GCTTGATTGTCGACACGATACTA 58.651 43.478 19.90 1.27 38.42 1.82
108 109 4.204573 GCTTGATTGTCGACACGATACTAC 59.795 45.833 19.90 0.21 38.42 2.73
109 110 4.950434 TGATTGTCGACACGATACTACA 57.050 40.909 19.90 0.00 38.42 2.74
110 111 4.655027 TGATTGTCGACACGATACTACAC 58.345 43.478 19.90 0.92 38.42 2.90
111 112 3.476295 TTGTCGACACGATACTACACC 57.524 47.619 19.90 0.00 38.42 4.16
112 113 2.703416 TGTCGACACGATACTACACCT 58.297 47.619 15.76 0.00 38.42 4.00
113 114 3.860641 TGTCGACACGATACTACACCTA 58.139 45.455 15.76 0.00 38.42 3.08
114 115 3.618594 TGTCGACACGATACTACACCTAC 59.381 47.826 15.76 0.00 38.42 3.18
115 116 3.618594 GTCGACACGATACTACACCTACA 59.381 47.826 11.55 0.00 38.42 2.74
116 117 3.867493 TCGACACGATACTACACCTACAG 59.133 47.826 0.00 0.00 0.00 2.74
117 118 3.867493 CGACACGATACTACACCTACAGA 59.133 47.826 0.00 0.00 0.00 3.41
118 119 4.330894 CGACACGATACTACACCTACAGAA 59.669 45.833 0.00 0.00 0.00 3.02
119 120 5.163824 CGACACGATACTACACCTACAGAAA 60.164 44.000 0.00 0.00 0.00 2.52
151 152 6.544038 AAATAACCTACACGTGTGGTTTAC 57.456 37.500 37.13 0.00 38.94 2.01
152 153 2.138596 ACCTACACGTGTGGTTTACG 57.861 50.000 30.83 16.41 46.31 3.18
169 170 2.606826 GGACCTCTTCCACCCCGT 60.607 66.667 0.00 0.00 45.10 5.28
175 176 1.280998 CCTCTTCCACCCCGTAAATGT 59.719 52.381 0.00 0.00 0.00 2.71
177 178 1.066716 TCTTCCACCCCGTAAATGTCG 60.067 52.381 0.00 0.00 0.00 4.35
194 196 1.064060 GTCGAATGGAGCCGAATTTGG 59.936 52.381 7.44 7.44 36.50 3.28
197 199 2.477863 CGAATGGAGCCGAATTTGGAAC 60.478 50.000 16.55 7.85 0.00 3.62
198 200 2.514458 ATGGAGCCGAATTTGGAACT 57.486 45.000 16.55 3.66 0.00 3.01
200 202 2.159382 TGGAGCCGAATTTGGAACTTC 58.841 47.619 16.55 3.41 0.00 3.01
254 259 5.452777 CGAAAAGAACAGAGGGAATTTGAC 58.547 41.667 0.00 0.00 0.00 3.18
255 260 5.239525 CGAAAAGAACAGAGGGAATTTGACT 59.760 40.000 0.00 0.00 0.00 3.41
256 261 6.396829 AAAAGAACAGAGGGAATTTGACTG 57.603 37.500 0.00 0.00 35.14 3.51
258 263 2.206576 ACAGAGGGAATTTGACTGGC 57.793 50.000 0.00 0.00 33.57 4.85
259 264 1.425066 ACAGAGGGAATTTGACTGGCA 59.575 47.619 0.00 0.00 33.57 4.92
276 282 7.690228 TGACTGGCAAAACGTCATATATTAAC 58.310 34.615 3.44 0.00 33.15 2.01
277 283 7.334671 TGACTGGCAAAACGTCATATATTAACA 59.665 33.333 3.44 0.00 33.15 2.41
278 284 8.046294 ACTGGCAAAACGTCATATATTAACAA 57.954 30.769 0.00 0.00 0.00 2.83
279 285 7.966204 ACTGGCAAAACGTCATATATTAACAAC 59.034 33.333 0.00 0.00 0.00 3.32
358 364 1.348250 CCGTGGTTGCATCGATTCG 59.652 57.895 0.00 0.00 0.00 3.34
482 5337 1.214424 GCTTGGAGCCTAAACCCCATA 59.786 52.381 0.00 0.00 34.48 2.74
490 5345 5.163131 GGAGCCTAAACCCCATAATTAGTCA 60.163 44.000 0.00 0.00 0.00 3.41
529 5384 0.169230 TTGTTTTTGTGTGAGCGCGT 59.831 45.000 8.43 0.00 0.00 6.01
536 5391 2.510464 TGTGAGCGCGTGTGTGTT 60.510 55.556 8.43 0.00 0.00 3.32
538 5393 1.367665 GTGAGCGCGTGTGTGTTTC 60.368 57.895 8.43 0.00 0.00 2.78
540 5395 2.867091 GAGCGCGTGTGTGTTTCGT 61.867 57.895 8.43 0.00 0.00 3.85
545 5400 0.855670 GCGTGTGTGTTTCGTGTGTG 60.856 55.000 0.00 0.00 0.00 3.82
546 5401 0.855670 CGTGTGTGTTTCGTGTGTGC 60.856 55.000 0.00 0.00 0.00 4.57
547 5402 0.446222 GTGTGTGTTTCGTGTGTGCT 59.554 50.000 0.00 0.00 0.00 4.40
548 5403 1.135803 GTGTGTGTTTCGTGTGTGCTT 60.136 47.619 0.00 0.00 0.00 3.91
549 5404 2.094575 GTGTGTGTTTCGTGTGTGCTTA 59.905 45.455 0.00 0.00 0.00 3.09
550 5405 2.350192 TGTGTGTTTCGTGTGTGCTTAG 59.650 45.455 0.00 0.00 0.00 2.18
551 5406 1.329292 TGTGTTTCGTGTGTGCTTAGC 59.671 47.619 0.00 0.00 0.00 3.09
552 5407 0.941542 TGTTTCGTGTGTGCTTAGCC 59.058 50.000 0.29 0.00 0.00 3.93
553 5408 1.226746 GTTTCGTGTGTGCTTAGCCT 58.773 50.000 0.29 0.00 0.00 4.58
554 5409 2.224090 TGTTTCGTGTGTGCTTAGCCTA 60.224 45.455 0.29 0.00 0.00 3.93
567 5422 4.263994 TGCTTAGCCTAGGTATAGCTAGCT 60.264 45.833 26.74 25.94 39.06 3.32
568 5423 5.045066 TGCTTAGCCTAGGTATAGCTAGCTA 60.045 44.000 26.09 26.09 36.99 3.32
569 5424 5.297527 GCTTAGCCTAGGTATAGCTAGCTAC 59.702 48.000 26.41 17.23 36.99 3.58
570 5425 6.639590 TTAGCCTAGGTATAGCTAGCTACT 57.360 41.667 26.41 23.53 36.99 2.57
571 5426 5.106876 AGCCTAGGTATAGCTAGCTACTC 57.893 47.826 26.41 19.99 36.99 2.59
572 5427 4.080186 AGCCTAGGTATAGCTAGCTACTCC 60.080 50.000 26.41 26.57 36.99 3.85
573 5428 4.784177 CCTAGGTATAGCTAGCTACTCCC 58.216 52.174 28.61 24.88 36.99 4.30
574 5429 4.475747 CCTAGGTATAGCTAGCTACTCCCT 59.524 50.000 28.23 28.23 36.99 4.20
575 5430 4.579647 AGGTATAGCTAGCTACTCCCTC 57.420 50.000 28.61 16.68 33.97 4.30
576 5431 3.267551 AGGTATAGCTAGCTACTCCCTCC 59.732 52.174 28.61 21.77 33.97 4.30
577 5432 2.500392 ATAGCTAGCTACTCCCTCCG 57.500 55.000 26.41 0.00 0.00 4.63
578 5433 1.138568 TAGCTAGCTACTCCCTCCGT 58.861 55.000 20.67 0.00 0.00 4.69
579 5434 0.179012 AGCTAGCTACTCCCTCCGTC 60.179 60.000 17.69 0.00 0.00 4.79
580 5435 0.179012 GCTAGCTACTCCCTCCGTCT 60.179 60.000 7.70 0.00 0.00 4.18
581 5436 1.072015 GCTAGCTACTCCCTCCGTCTA 59.928 57.143 7.70 0.00 0.00 2.59
582 5437 2.872842 GCTAGCTACTCCCTCCGTCTAG 60.873 59.091 7.70 0.00 0.00 2.43
583 5438 0.475044 AGCTACTCCCTCCGTCTAGG 59.525 60.000 0.00 0.00 42.97 3.02
584 5439 0.183252 GCTACTCCCTCCGTCTAGGT 59.817 60.000 0.00 0.00 41.99 3.08
585 5440 1.970092 CTACTCCCTCCGTCTAGGTG 58.030 60.000 0.00 0.00 41.99 4.00
586 5441 1.212441 CTACTCCCTCCGTCTAGGTGT 59.788 57.143 0.00 0.00 41.99 4.16
587 5442 0.323542 ACTCCCTCCGTCTAGGTGTG 60.324 60.000 0.00 0.00 41.99 3.82
588 5443 0.323542 CTCCCTCCGTCTAGGTGTGT 60.324 60.000 0.00 0.00 41.99 3.72
589 5444 0.994247 TCCCTCCGTCTAGGTGTGTA 59.006 55.000 0.00 0.00 41.99 2.90
590 5445 1.355381 TCCCTCCGTCTAGGTGTGTAA 59.645 52.381 0.00 0.00 41.99 2.41
591 5446 1.749634 CCCTCCGTCTAGGTGTGTAAG 59.250 57.143 0.00 0.00 41.99 2.34
592 5447 2.444421 CCTCCGTCTAGGTGTGTAAGT 58.556 52.381 0.00 0.00 41.99 2.24
593 5448 2.422832 CCTCCGTCTAGGTGTGTAAGTC 59.577 54.545 0.00 0.00 41.99 3.01
594 5449 3.079578 CTCCGTCTAGGTGTGTAAGTCA 58.920 50.000 0.00 0.00 41.99 3.41
595 5450 3.693807 TCCGTCTAGGTGTGTAAGTCAT 58.306 45.455 0.00 0.00 41.99 3.06
596 5451 3.693085 TCCGTCTAGGTGTGTAAGTCATC 59.307 47.826 0.00 0.00 41.99 2.92
597 5452 3.695060 CCGTCTAGGTGTGTAAGTCATCT 59.305 47.826 0.00 0.00 34.51 2.90
598 5453 4.158025 CCGTCTAGGTGTGTAAGTCATCTT 59.842 45.833 0.00 0.00 35.02 2.40
599 5454 5.356190 CCGTCTAGGTGTGTAAGTCATCTTA 59.644 44.000 0.00 0.00 33.66 2.10
600 5455 6.039493 CCGTCTAGGTGTGTAAGTCATCTTAT 59.961 42.308 0.00 0.00 35.59 1.73
601 5456 6.913132 CGTCTAGGTGTGTAAGTCATCTTATG 59.087 42.308 0.00 0.00 38.25 1.90
602 5457 7.201705 CGTCTAGGTGTGTAAGTCATCTTATGA 60.202 40.741 0.00 0.00 38.25 2.15
603 5458 8.467598 GTCTAGGTGTGTAAGTCATCTTATGAA 58.532 37.037 0.00 0.00 41.69 2.57
604 5459 9.031537 TCTAGGTGTGTAAGTCATCTTATGAAA 57.968 33.333 0.00 0.00 41.69 2.69
605 5460 9.653287 CTAGGTGTGTAAGTCATCTTATGAAAA 57.347 33.333 0.00 0.00 41.69 2.29
607 5462 9.167311 AGGTGTGTAAGTCATCTTATGAAAATC 57.833 33.333 0.00 0.00 41.69 2.17
608 5463 8.946085 GGTGTGTAAGTCATCTTATGAAAATCA 58.054 33.333 0.00 0.00 41.69 2.57
631 5486 9.956640 ATCAAATATTTCCAAAACATTTAGGCA 57.043 25.926 0.00 0.00 0.00 4.75
632 5487 9.213799 TCAAATATTTCCAAAACATTTAGGCAC 57.786 29.630 0.00 0.00 0.00 5.01
633 5488 7.826260 AATATTTCCAAAACATTTAGGCACG 57.174 32.000 0.00 0.00 0.00 5.34
634 5489 3.651803 TTCCAAAACATTTAGGCACGG 57.348 42.857 0.00 0.00 0.00 4.94
635 5490 2.588620 TCCAAAACATTTAGGCACGGT 58.411 42.857 0.00 0.00 0.00 4.83
636 5491 2.294791 TCCAAAACATTTAGGCACGGTG 59.705 45.455 3.15 3.15 0.00 4.94
637 5492 2.058057 CAAAACATTTAGGCACGGTGC 58.942 47.619 24.43 24.43 44.08 5.01
650 5505 3.691498 GCACGGTGCATTAAATTCTACC 58.309 45.455 27.10 0.00 44.26 3.18
651 5506 3.377172 GCACGGTGCATTAAATTCTACCT 59.623 43.478 27.10 0.00 44.26 3.08
652 5507 4.142469 GCACGGTGCATTAAATTCTACCTT 60.142 41.667 27.10 0.00 44.26 3.50
653 5508 5.331902 CACGGTGCATTAAATTCTACCTTG 58.668 41.667 0.00 0.00 0.00 3.61
654 5509 5.007682 ACGGTGCATTAAATTCTACCTTGT 58.992 37.500 0.00 0.00 0.00 3.16
655 5510 5.475564 ACGGTGCATTAAATTCTACCTTGTT 59.524 36.000 0.00 0.00 0.00 2.83
656 5511 6.015772 ACGGTGCATTAAATTCTACCTTGTTT 60.016 34.615 0.00 0.00 0.00 2.83
657 5512 6.526674 CGGTGCATTAAATTCTACCTTGTTTC 59.473 38.462 0.00 0.00 0.00 2.78
658 5513 7.574967 CGGTGCATTAAATTCTACCTTGTTTCT 60.575 37.037 0.00 0.00 0.00 2.52
659 5514 8.088365 GGTGCATTAAATTCTACCTTGTTTCTT 58.912 33.333 0.00 0.00 0.00 2.52
660 5515 8.915654 GTGCATTAAATTCTACCTTGTTTCTTG 58.084 33.333 0.00 0.00 0.00 3.02
661 5516 8.637986 TGCATTAAATTCTACCTTGTTTCTTGT 58.362 29.630 0.00 0.00 0.00 3.16
662 5517 9.476202 GCATTAAATTCTACCTTGTTTCTTGTT 57.524 29.630 0.00 0.00 0.00 2.83
667 5522 9.586435 AAATTCTACCTTGTTTCTTGTTTCTTG 57.414 29.630 0.00 0.00 0.00 3.02
668 5523 7.931578 TTCTACCTTGTTTCTTGTTTCTTGA 57.068 32.000 0.00 0.00 0.00 3.02
669 5524 7.316544 TCTACCTTGTTTCTTGTTTCTTGAC 57.683 36.000 0.00 0.00 0.00 3.18
670 5525 5.975693 ACCTTGTTTCTTGTTTCTTGACA 57.024 34.783 0.00 0.00 0.00 3.58
671 5526 6.530019 ACCTTGTTTCTTGTTTCTTGACAT 57.470 33.333 0.00 0.00 0.00 3.06
672 5527 7.639113 ACCTTGTTTCTTGTTTCTTGACATA 57.361 32.000 0.00 0.00 0.00 2.29
673 5528 8.237811 ACCTTGTTTCTTGTTTCTTGACATAT 57.762 30.769 0.00 0.00 0.00 1.78
674 5529 8.352942 ACCTTGTTTCTTGTTTCTTGACATATC 58.647 33.333 0.00 0.00 0.00 1.63
675 5530 8.352201 CCTTGTTTCTTGTTTCTTGACATATCA 58.648 33.333 0.00 0.00 0.00 2.15
676 5531 9.734620 CTTGTTTCTTGTTTCTTGACATATCAA 57.265 29.630 0.00 0.00 42.73 2.57
677 5532 9.515020 TTGTTTCTTGTTTCTTGACATATCAAC 57.485 29.630 0.00 0.00 40.01 3.18
678 5533 8.134895 TGTTTCTTGTTTCTTGACATATCAACC 58.865 33.333 0.00 0.00 40.01 3.77
679 5534 7.815840 TTCTTGTTTCTTGACATATCAACCA 57.184 32.000 0.00 0.00 40.01 3.67
680 5535 7.815840 TCTTGTTTCTTGACATATCAACCAA 57.184 32.000 0.00 0.00 40.01 3.67
681 5536 8.408043 TCTTGTTTCTTGACATATCAACCAAT 57.592 30.769 0.00 0.00 40.01 3.16
682 5537 9.513906 TCTTGTTTCTTGACATATCAACCAATA 57.486 29.630 0.00 0.00 40.01 1.90
694 5549 9.312904 ACATATCAACCAATAAAAGATATGGGG 57.687 33.333 19.09 0.00 46.38 4.96
695 5550 9.312904 CATATCAACCAATAAAAGATATGGGGT 57.687 33.333 11.11 0.00 42.07 4.95
696 5551 7.601705 ATCAACCAATAAAAGATATGGGGTG 57.398 36.000 1.14 1.14 37.12 4.61
697 5552 6.498538 TCAACCAATAAAAGATATGGGGTGT 58.501 36.000 6.77 0.00 37.10 4.16
698 5553 6.379703 TCAACCAATAAAAGATATGGGGTGTG 59.620 38.462 6.77 0.00 37.10 3.82
699 5554 4.649218 ACCAATAAAAGATATGGGGTGTGC 59.351 41.667 0.00 0.00 37.26 4.57
700 5555 4.648762 CCAATAAAAGATATGGGGTGTGCA 59.351 41.667 0.00 0.00 0.00 4.57
701 5556 5.305128 CCAATAAAAGATATGGGGTGTGCAT 59.695 40.000 0.00 0.00 0.00 3.96
702 5557 6.218019 CAATAAAAGATATGGGGTGTGCATG 58.782 40.000 0.00 0.00 0.00 4.06
703 5558 2.369983 AAGATATGGGGTGTGCATGG 57.630 50.000 0.00 0.00 0.00 3.66
704 5559 1.225373 AGATATGGGGTGTGCATGGT 58.775 50.000 0.00 0.00 0.00 3.55
705 5560 1.570501 AGATATGGGGTGTGCATGGTT 59.429 47.619 0.00 0.00 0.00 3.67
706 5561 2.024080 AGATATGGGGTGTGCATGGTTT 60.024 45.455 0.00 0.00 0.00 3.27
707 5562 2.317371 TATGGGGTGTGCATGGTTTT 57.683 45.000 0.00 0.00 0.00 2.43
708 5563 2.317371 ATGGGGTGTGCATGGTTTTA 57.683 45.000 0.00 0.00 0.00 1.52
709 5564 2.088104 TGGGGTGTGCATGGTTTTAA 57.912 45.000 0.00 0.00 0.00 1.52
710 5565 2.614259 TGGGGTGTGCATGGTTTTAAT 58.386 42.857 0.00 0.00 0.00 1.40
711 5566 2.301296 TGGGGTGTGCATGGTTTTAATG 59.699 45.455 0.00 0.00 0.00 1.90
712 5567 2.564947 GGGGTGTGCATGGTTTTAATGA 59.435 45.455 0.00 0.00 0.00 2.57
713 5568 3.584834 GGGTGTGCATGGTTTTAATGAC 58.415 45.455 0.00 0.00 0.00 3.06
714 5569 3.258123 GGGTGTGCATGGTTTTAATGACT 59.742 43.478 0.00 0.00 0.00 3.41
715 5570 4.262420 GGGTGTGCATGGTTTTAATGACTT 60.262 41.667 0.00 0.00 0.00 3.01
716 5571 4.685628 GGTGTGCATGGTTTTAATGACTTG 59.314 41.667 0.00 0.00 0.00 3.16
717 5572 5.508825 GGTGTGCATGGTTTTAATGACTTGA 60.509 40.000 0.00 0.00 0.00 3.02
718 5573 5.630680 GTGTGCATGGTTTTAATGACTTGAG 59.369 40.000 0.00 0.00 0.00 3.02
719 5574 5.534278 TGTGCATGGTTTTAATGACTTGAGA 59.466 36.000 0.00 0.00 0.00 3.27
720 5575 5.858581 GTGCATGGTTTTAATGACTTGAGAC 59.141 40.000 0.00 0.00 0.00 3.36
721 5576 5.769662 TGCATGGTTTTAATGACTTGAGACT 59.230 36.000 0.00 0.00 0.00 3.24
722 5577 6.939730 TGCATGGTTTTAATGACTTGAGACTA 59.060 34.615 0.00 0.00 0.00 2.59
723 5578 7.611467 TGCATGGTTTTAATGACTTGAGACTAT 59.389 33.333 0.00 0.00 0.00 2.12
724 5579 8.125448 GCATGGTTTTAATGACTTGAGACTATC 58.875 37.037 0.00 0.00 0.00 2.08
725 5580 9.166173 CATGGTTTTAATGACTTGAGACTATCA 57.834 33.333 0.00 0.00 35.62 2.15
726 5581 9.739276 ATGGTTTTAATGACTTGAGACTATCAA 57.261 29.630 0.00 0.00 45.79 2.57
737 5592 3.926527 TGAGACTATCAAACACGACATGC 59.073 43.478 0.00 0.00 34.02 4.06
738 5593 3.925379 AGACTATCAAACACGACATGCA 58.075 40.909 0.00 0.00 0.00 3.96
739 5594 3.928992 AGACTATCAAACACGACATGCAG 59.071 43.478 0.00 0.00 0.00 4.41
740 5595 3.664107 ACTATCAAACACGACATGCAGT 58.336 40.909 0.00 0.00 0.00 4.40
741 5596 2.975410 ATCAAACACGACATGCAGTG 57.025 45.000 16.62 16.62 43.46 3.66
742 5597 0.943673 TCAAACACGACATGCAGTGG 59.056 50.000 20.60 7.50 42.25 4.00
743 5598 0.662619 CAAACACGACATGCAGTGGT 59.337 50.000 20.60 14.15 42.25 4.16
744 5599 1.388547 AAACACGACATGCAGTGGTT 58.611 45.000 20.60 18.36 42.73 3.67
745 5600 2.248280 AACACGACATGCAGTGGTTA 57.752 45.000 20.60 0.00 42.25 2.85
746 5601 1.795768 ACACGACATGCAGTGGTTAG 58.204 50.000 20.60 1.38 42.25 2.34
747 5602 1.070134 ACACGACATGCAGTGGTTAGT 59.930 47.619 20.60 1.96 42.25 2.24
748 5603 2.143122 CACGACATGCAGTGGTTAGTT 58.857 47.619 11.93 0.00 37.03 2.24
749 5604 2.157668 CACGACATGCAGTGGTTAGTTC 59.842 50.000 11.93 0.00 37.03 3.01
750 5605 2.224185 ACGACATGCAGTGGTTAGTTCA 60.224 45.455 0.00 0.00 35.47 3.18
751 5606 3.002791 CGACATGCAGTGGTTAGTTCAT 58.997 45.455 0.00 0.00 0.00 2.57
752 5607 3.436704 CGACATGCAGTGGTTAGTTCATT 59.563 43.478 0.00 0.00 0.00 2.57
753 5608 4.669965 CGACATGCAGTGGTTAGTTCATTG 60.670 45.833 0.00 0.00 0.00 2.82
754 5609 3.057315 ACATGCAGTGGTTAGTTCATTGC 60.057 43.478 0.00 4.92 44.56 3.56
756 5611 3.855689 GCAGTGGTTAGTTCATTGCAT 57.144 42.857 6.68 0.00 44.01 3.96
757 5612 3.504863 GCAGTGGTTAGTTCATTGCATG 58.495 45.455 6.68 0.00 44.01 4.06
758 5613 3.504863 CAGTGGTTAGTTCATTGCATGC 58.495 45.455 11.82 11.82 0.00 4.06
759 5614 3.057386 CAGTGGTTAGTTCATTGCATGCA 60.057 43.478 18.46 18.46 0.00 3.96
760 5615 3.192001 AGTGGTTAGTTCATTGCATGCAG 59.808 43.478 21.50 10.69 0.00 4.41
761 5616 3.057315 GTGGTTAGTTCATTGCATGCAGT 60.057 43.478 21.50 16.05 0.00 4.40
762 5617 3.057386 TGGTTAGTTCATTGCATGCAGTG 60.057 43.478 31.12 31.12 35.39 3.66
796 5651 7.295952 AGCAAATGAACATTAAGTACTCTCG 57.704 36.000 0.00 0.00 0.00 4.04
797 5652 6.874134 AGCAAATGAACATTAAGTACTCTCGT 59.126 34.615 0.00 0.00 0.00 4.18
798 5653 7.387948 AGCAAATGAACATTAAGTACTCTCGTT 59.612 33.333 0.00 0.00 0.00 3.85
799 5654 8.015658 GCAAATGAACATTAAGTACTCTCGTTT 58.984 33.333 0.00 0.00 0.00 3.60
800 5655 9.878599 CAAATGAACATTAAGTACTCTCGTTTT 57.121 29.630 0.00 0.00 0.00 2.43
803 5658 8.080083 TGAACATTAAGTACTCTCGTTTTTCC 57.920 34.615 0.00 0.00 0.00 3.13
804 5659 7.929785 TGAACATTAAGTACTCTCGTTTTTCCT 59.070 33.333 0.00 0.00 0.00 3.36
805 5660 8.672823 AACATTAAGTACTCTCGTTTTTCCTT 57.327 30.769 0.00 0.00 0.00 3.36
806 5661 8.307921 ACATTAAGTACTCTCGTTTTTCCTTC 57.692 34.615 0.00 0.00 0.00 3.46
807 5662 7.387122 ACATTAAGTACTCTCGTTTTTCCTTCC 59.613 37.037 0.00 0.00 0.00 3.46
808 5663 5.548181 AAGTACTCTCGTTTTTCCTTCCT 57.452 39.130 0.00 0.00 0.00 3.36
809 5664 5.136816 AGTACTCTCGTTTTTCCTTCCTC 57.863 43.478 0.00 0.00 0.00 3.71
810 5665 4.833938 AGTACTCTCGTTTTTCCTTCCTCT 59.166 41.667 0.00 0.00 0.00 3.69
811 5666 4.691326 ACTCTCGTTTTTCCTTCCTCTT 57.309 40.909 0.00 0.00 0.00 2.85
812 5667 5.037383 ACTCTCGTTTTTCCTTCCTCTTT 57.963 39.130 0.00 0.00 0.00 2.52
813 5668 4.816925 ACTCTCGTTTTTCCTTCCTCTTTG 59.183 41.667 0.00 0.00 0.00 2.77
814 5669 4.134563 TCTCGTTTTTCCTTCCTCTTTGG 58.865 43.478 0.00 0.00 37.10 3.28
815 5670 3.883489 CTCGTTTTTCCTTCCTCTTTGGT 59.117 43.478 0.00 0.00 37.07 3.67
816 5671 3.881089 TCGTTTTTCCTTCCTCTTTGGTC 59.119 43.478 0.00 0.00 37.07 4.02
817 5672 3.630312 CGTTTTTCCTTCCTCTTTGGTCA 59.370 43.478 0.00 0.00 37.07 4.02
818 5673 4.497507 CGTTTTTCCTTCCTCTTTGGTCAC 60.498 45.833 0.00 0.00 37.07 3.67
819 5674 2.543777 TTCCTTCCTCTTTGGTCACG 57.456 50.000 0.00 0.00 37.07 4.35
820 5675 0.685097 TCCTTCCTCTTTGGTCACGG 59.315 55.000 0.00 0.00 37.07 4.94
821 5676 0.396811 CCTTCCTCTTTGGTCACGGT 59.603 55.000 0.00 0.00 37.07 4.83
822 5677 1.512926 CTTCCTCTTTGGTCACGGTG 58.487 55.000 0.56 0.56 37.07 4.94
823 5678 0.534203 TTCCTCTTTGGTCACGGTGC 60.534 55.000 2.51 0.00 37.07 5.01
824 5679 1.227823 CCTCTTTGGTCACGGTGCA 60.228 57.895 2.51 0.00 0.00 4.57
825 5680 1.507141 CCTCTTTGGTCACGGTGCAC 61.507 60.000 8.80 8.80 0.00 4.57
826 5681 0.813610 CTCTTTGGTCACGGTGCACA 60.814 55.000 20.43 1.81 0.00 4.57
827 5682 0.393132 TCTTTGGTCACGGTGCACAA 60.393 50.000 20.43 8.11 0.00 3.33
828 5683 0.248458 CTTTGGTCACGGTGCACAAC 60.248 55.000 20.43 10.47 0.00 3.32
829 5684 1.658686 TTTGGTCACGGTGCACAACC 61.659 55.000 20.43 18.91 46.60 3.77
840 5695 4.584327 GGTGCACAACCTAAAATGACTT 57.416 40.909 20.43 0.00 46.55 3.01
841 5696 5.699097 GGTGCACAACCTAAAATGACTTA 57.301 39.130 20.43 0.00 46.55 2.24
842 5697 5.458015 GGTGCACAACCTAAAATGACTTAC 58.542 41.667 20.43 0.00 46.55 2.34
843 5698 5.240844 GGTGCACAACCTAAAATGACTTACT 59.759 40.000 20.43 0.00 46.55 2.24
844 5699 6.371389 GTGCACAACCTAAAATGACTTACTC 58.629 40.000 13.17 0.00 0.00 2.59
845 5700 6.017440 GTGCACAACCTAAAATGACTTACTCA 60.017 38.462 13.17 0.00 0.00 3.41
846 5701 6.017440 TGCACAACCTAAAATGACTTACTCAC 60.017 38.462 0.00 0.00 0.00 3.51
847 5702 6.567891 GCACAACCTAAAATGACTTACTCACC 60.568 42.308 0.00 0.00 0.00 4.02
848 5703 6.710744 CACAACCTAAAATGACTTACTCACCT 59.289 38.462 0.00 0.00 0.00 4.00
849 5704 7.876068 CACAACCTAAAATGACTTACTCACCTA 59.124 37.037 0.00 0.00 0.00 3.08
850 5705 8.095169 ACAACCTAAAATGACTTACTCACCTAG 58.905 37.037 0.00 0.00 0.00 3.02
851 5706 8.311836 CAACCTAAAATGACTTACTCACCTAGA 58.688 37.037 0.00 0.00 0.00 2.43
852 5707 7.838884 ACCTAAAATGACTTACTCACCTAGAC 58.161 38.462 0.00 0.00 0.00 2.59
853 5708 6.973474 CCTAAAATGACTTACTCACCTAGACG 59.027 42.308 0.00 0.00 0.00 4.18
854 5709 4.985538 AATGACTTACTCACCTAGACGG 57.014 45.455 0.00 0.00 39.35 4.79
855 5710 3.708403 TGACTTACTCACCTAGACGGA 57.292 47.619 0.00 0.00 36.31 4.69
856 5711 3.607741 TGACTTACTCACCTAGACGGAG 58.392 50.000 0.00 0.00 36.31 4.63
857 5712 2.944349 GACTTACTCACCTAGACGGAGG 59.056 54.545 0.00 0.00 42.89 4.30
858 5713 2.299521 CTTACTCACCTAGACGGAGGG 58.700 57.143 5.42 0.00 41.36 4.30
859 5714 1.588239 TACTCACCTAGACGGAGGGA 58.412 55.000 5.42 0.16 41.36 4.20
860 5715 0.256464 ACTCACCTAGACGGAGGGAG 59.744 60.000 12.80 12.80 41.36 4.30
898 5754 1.517257 CTTCTCAGTGCGCCTACCG 60.517 63.158 4.18 0.00 40.75 4.02
955 5819 3.230990 GCACCAACCCCAACACCC 61.231 66.667 0.00 0.00 0.00 4.61
1066 5965 2.135933 GCTCTTTTGCACGTACAGAGT 58.864 47.619 5.67 0.00 34.58 3.24
1068 5967 3.002348 GCTCTTTTGCACGTACAGAGTTT 59.998 43.478 5.67 0.00 34.58 2.66
1069 5968 4.495844 GCTCTTTTGCACGTACAGAGTTTT 60.496 41.667 5.67 0.00 34.58 2.43
1073 5972 5.646467 TTTGCACGTACAGAGTTTTCTAC 57.354 39.130 0.00 0.00 30.73 2.59
1077 5976 5.094134 GCACGTACAGAGTTTTCTACCTAG 58.906 45.833 0.00 0.00 30.73 3.02
1089 5988 4.698583 TTCTACCTAGCTCACTTCGAAC 57.301 45.455 0.00 0.00 0.00 3.95
1090 5989 3.682696 TCTACCTAGCTCACTTCGAACA 58.317 45.455 0.00 0.00 0.00 3.18
1091 5990 4.077108 TCTACCTAGCTCACTTCGAACAA 58.923 43.478 0.00 0.00 0.00 2.83
1092 5991 3.746045 ACCTAGCTCACTTCGAACAAA 57.254 42.857 0.00 0.00 0.00 2.83
1093 5992 4.273148 ACCTAGCTCACTTCGAACAAAT 57.727 40.909 0.00 0.00 0.00 2.32
1094 5993 4.246458 ACCTAGCTCACTTCGAACAAATC 58.754 43.478 0.00 0.00 0.00 2.17
1095 5994 4.021016 ACCTAGCTCACTTCGAACAAATCT 60.021 41.667 0.00 0.00 0.00 2.40
1096 5995 4.564769 CCTAGCTCACTTCGAACAAATCTC 59.435 45.833 0.00 0.00 0.00 2.75
1097 5996 3.995199 AGCTCACTTCGAACAAATCTCA 58.005 40.909 0.00 0.00 0.00 3.27
1098 5997 3.743396 AGCTCACTTCGAACAAATCTCAC 59.257 43.478 0.00 0.00 0.00 3.51
1099 5998 3.120511 GCTCACTTCGAACAAATCTCACC 60.121 47.826 0.00 0.00 0.00 4.02
1100 5999 3.057019 TCACTTCGAACAAATCTCACCG 58.943 45.455 0.00 0.00 0.00 4.94
1101 6000 1.798813 ACTTCGAACAAATCTCACCGC 59.201 47.619 0.00 0.00 0.00 5.68
1102 6001 2.069273 CTTCGAACAAATCTCACCGCT 58.931 47.619 0.00 0.00 0.00 5.52
1103 6002 1.428448 TCGAACAAATCTCACCGCTG 58.572 50.000 0.00 0.00 0.00 5.18
1343 6242 1.757340 GCTCGTGCCCTACTACCCT 60.757 63.158 0.00 0.00 0.00 4.34
2575 7512 0.950116 CGATCGAGTACCTACCCACC 59.050 60.000 10.26 0.00 0.00 4.61
2578 7515 3.558746 CGATCGAGTACCTACCCACCTAT 60.559 52.174 10.26 0.00 0.00 2.57
2586 7524 1.692519 CCTACCCACCTATGTACAGGC 59.307 57.143 0.33 0.00 39.53 4.85
2588 7526 1.204146 ACCCACCTATGTACAGGCAG 58.796 55.000 0.33 0.00 39.53 4.85
2589 7527 0.179045 CCCACCTATGTACAGGCAGC 60.179 60.000 0.33 0.00 39.53 5.25
2592 7530 1.407618 CACCTATGTACAGGCAGCGTA 59.592 52.381 0.33 0.00 39.53 4.42
2593 7531 1.407979 ACCTATGTACAGGCAGCGTAC 59.592 52.381 0.33 4.16 39.53 3.67
2595 7533 4.979204 TGTACAGGCAGCGTACAC 57.021 55.556 8.71 1.28 43.19 2.90
2671 7643 1.002430 TGCATCTCCTGACTGACCAAC 59.998 52.381 0.00 0.00 0.00 3.77
2697 7669 8.667987 TTTTGCTCTTGTGCTTATTATTTACG 57.332 30.769 0.00 0.00 0.00 3.18
2698 7670 6.978343 TGCTCTTGTGCTTATTATTTACGT 57.022 33.333 0.00 0.00 0.00 3.57
2710 7682 9.953825 GCTTATTATTTACGTATATCTGTGTGC 57.046 33.333 1.54 0.00 0.00 4.57
2716 7688 1.852280 CGTATATCTGTGTGCGTGGTG 59.148 52.381 0.00 0.00 0.00 4.17
2833 7818 5.978814 TCTGCTAGTAAGGAATGAAAGGTC 58.021 41.667 0.00 0.00 0.00 3.85
2834 7819 4.755411 TGCTAGTAAGGAATGAAAGGTCG 58.245 43.478 0.00 0.00 0.00 4.79
2835 7820 4.120589 GCTAGTAAGGAATGAAAGGTCGG 58.879 47.826 0.00 0.00 0.00 4.79
2836 7821 4.382793 GCTAGTAAGGAATGAAAGGTCGGT 60.383 45.833 0.00 0.00 0.00 4.69
2842 7827 2.614481 GGAATGAAAGGTCGGTGTGCTA 60.614 50.000 0.00 0.00 0.00 3.49
2880 8164 1.442769 CGGGAGTGGATCAACAACTG 58.557 55.000 2.34 0.00 0.00 3.16
2881 8165 1.826385 GGGAGTGGATCAACAACTGG 58.174 55.000 2.34 0.00 0.00 4.00
2882 8166 1.614317 GGGAGTGGATCAACAACTGGG 60.614 57.143 2.34 0.00 0.00 4.45
2887 8171 3.074412 GTGGATCAACAACTGGGTAGTG 58.926 50.000 0.00 0.00 37.19 2.74
2899 8183 7.346471 ACAACTGGGTAGTGCAATTTAGATAT 58.654 34.615 0.00 0.00 37.19 1.63
2933 8266 8.506437 TGTTTATCTGAGAAGTACAGCAAAATG 58.494 33.333 0.00 0.00 35.61 2.32
2968 8301 1.222936 CCTGTGGGAGCATGAGACC 59.777 63.158 0.00 0.00 33.58 3.85
2971 8304 1.078143 GTGGGAGCATGAGACCACC 60.078 63.158 17.41 0.09 45.85 4.61
2972 8305 1.229625 TGGGAGCATGAGACCACCT 60.230 57.895 0.00 0.00 0.00 4.00
3016 8349 0.110869 TTTGGTTTCCGTGGGGTAGG 59.889 55.000 0.00 0.00 33.83 3.18
3046 8379 5.479027 GGGCTTGGTACTTTGATCCTAAAAA 59.521 40.000 0.00 0.00 0.00 1.94
3047 8380 6.350194 GGGCTTGGTACTTTGATCCTAAAAAG 60.350 42.308 0.00 2.56 38.95 2.27
3049 8382 7.362142 GGCTTGGTACTTTGATCCTAAAAAGAG 60.362 40.741 9.54 0.00 36.96 2.85
3067 8400 1.204941 GAGGACGGCATAGTTGACACT 59.795 52.381 0.00 0.00 36.99 3.55
3068 8401 1.204941 AGGACGGCATAGTTGACACTC 59.795 52.381 0.00 0.00 34.06 3.51
3074 8407 4.021368 ACGGCATAGTTGACACTCTACTTT 60.021 41.667 0.00 0.00 34.49 2.66
3077 8410 5.348997 GGCATAGTTGACACTCTACTTTCAC 59.651 44.000 0.00 0.00 34.49 3.18
3082 8415 6.159988 AGTTGACACTCTACTTTCACTATGC 58.840 40.000 0.00 0.00 28.33 3.14
3089 8422 6.804295 CACTCTACTTTCACTATGCGGATATC 59.196 42.308 0.00 0.00 0.00 1.63
3091 8424 4.955811 ACTTTCACTATGCGGATATCCA 57.044 40.909 21.70 3.25 35.14 3.41
3093 8426 3.297830 TTCACTATGCGGATATCCACG 57.702 47.619 21.70 9.58 35.14 4.94
3118 8451 2.049618 GCGCCGGAAATTGTTGCA 60.050 55.556 5.05 0.00 0.00 4.08
3124 8457 3.066380 GCCGGAAATTGTTGCAAAGATT 58.934 40.909 5.05 1.37 0.00 2.40
3126 8459 4.377328 GCCGGAAATTGTTGCAAAGATTTC 60.377 41.667 25.80 25.80 38.14 2.17
3140 8473 7.475015 TGCAAAGATTTCTCAGTTACATATGC 58.525 34.615 1.58 0.00 0.00 3.14
3141 8474 7.121020 TGCAAAGATTTCTCAGTTACATATGCA 59.879 33.333 1.58 0.00 0.00 3.96
3145 8478 8.798859 AGATTTCTCAGTTACATATGCAAACT 57.201 30.769 15.05 15.05 33.82 2.66
3147 8480 9.922305 GATTTCTCAGTTACATATGCAAACTAC 57.078 33.333 18.62 3.55 32.35 2.73
3166 8499 7.730364 AACTACCTAATACACTAATGCATGC 57.270 36.000 11.82 11.82 0.00 4.06
3167 8500 6.231211 ACTACCTAATACACTAATGCATGCC 58.769 40.000 16.68 0.00 0.00 4.40
3169 8502 5.634118 ACCTAATACACTAATGCATGCCAT 58.366 37.500 16.68 6.38 35.06 4.40
3179 8512 2.371910 TGCATGCCATGTTCACAATG 57.628 45.000 16.68 0.00 0.00 2.82
3183 8516 4.081586 TGCATGCCATGTTCACAATGTTAT 60.082 37.500 16.68 0.00 0.00 1.89
3184 8517 5.126707 TGCATGCCATGTTCACAATGTTATA 59.873 36.000 16.68 0.00 0.00 0.98
3185 8518 6.183360 TGCATGCCATGTTCACAATGTTATAT 60.183 34.615 16.68 0.00 0.00 0.86
3186 8519 6.364165 GCATGCCATGTTCACAATGTTATATC 59.636 38.462 6.36 0.00 0.00 1.63
3187 8520 7.427214 CATGCCATGTTCACAATGTTATATCA 58.573 34.615 0.00 0.00 0.00 2.15
3261 8656 2.110213 AACCACACGCCACGTCAT 59.890 55.556 0.00 0.00 38.32 3.06
3276 8671 0.713883 GTCATCCTAACACACGCACG 59.286 55.000 0.00 0.00 0.00 5.34
3335 8730 0.323087 TCACTCCTAGCACTACCGCA 60.323 55.000 0.00 0.00 0.00 5.69
3377 8772 1.573829 GACGAACCATGCGCTCCAAA 61.574 55.000 9.73 0.00 0.00 3.28
3432 8827 2.267642 CCACCGCCCGATTCAAGA 59.732 61.111 0.00 0.00 0.00 3.02
3439 8834 2.279741 CGCCCGATTCAAGAATCAGAA 58.720 47.619 19.48 0.00 45.60 3.02
3511 8907 0.893727 AAGGGAACGATTTTGCCGCT 60.894 50.000 0.00 0.00 34.86 5.52
3654 11008 1.153066 TTTGTCCAAGAGCACCGCA 60.153 52.632 0.00 0.00 0.00 5.69
3698 11498 1.565390 CCCCAGCATCCAAGACCTCA 61.565 60.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 1.026718 CCACAGATCTTGGCGGTTCC 61.027 60.000 9.94 0.00 0.00 3.62
3 4 0.606401 CACCACAGATCTTGGCGGTT 60.606 55.000 18.38 2.84 37.69 4.44
4 5 1.003355 CACCACAGATCTTGGCGGT 60.003 57.895 18.38 9.25 37.69 5.68
5 6 1.021390 GTCACCACAGATCTTGGCGG 61.021 60.000 18.38 13.18 37.69 6.13
6 7 1.354337 CGTCACCACAGATCTTGGCG 61.354 60.000 18.38 12.66 37.69 5.69
7 8 1.021390 CCGTCACCACAGATCTTGGC 61.021 60.000 18.38 5.48 37.69 4.52
8 9 1.021390 GCCGTCACCACAGATCTTGG 61.021 60.000 17.39 17.39 40.32 3.61
9 10 0.036952 AGCCGTCACCACAGATCTTG 60.037 55.000 0.00 0.00 0.00 3.02
10 11 0.687354 AAGCCGTCACCACAGATCTT 59.313 50.000 0.00 0.00 0.00 2.40
11 12 0.247736 GAAGCCGTCACCACAGATCT 59.752 55.000 0.00 0.00 0.00 2.75
12 13 0.037326 TGAAGCCGTCACCACAGATC 60.037 55.000 0.00 0.00 0.00 2.75
13 14 0.615331 ATGAAGCCGTCACCACAGAT 59.385 50.000 0.00 0.00 39.72 2.90
14 15 0.396435 AATGAAGCCGTCACCACAGA 59.604 50.000 0.00 0.00 39.72 3.41
15 16 1.197721 GAAATGAAGCCGTCACCACAG 59.802 52.381 0.00 0.00 39.72 3.66
16 17 1.234821 GAAATGAAGCCGTCACCACA 58.765 50.000 0.00 0.00 39.72 4.17
17 18 0.521735 GGAAATGAAGCCGTCACCAC 59.478 55.000 0.00 0.00 39.72 4.16
18 19 0.400213 AGGAAATGAAGCCGTCACCA 59.600 50.000 0.00 0.00 39.72 4.17
19 20 1.200020 CAAGGAAATGAAGCCGTCACC 59.800 52.381 0.00 0.00 39.72 4.02
20 21 1.880027 ACAAGGAAATGAAGCCGTCAC 59.120 47.619 0.00 0.00 39.72 3.67
21 22 1.879380 CACAAGGAAATGAAGCCGTCA 59.121 47.619 0.00 0.00 41.67 4.35
22 23 1.200020 CCACAAGGAAATGAAGCCGTC 59.800 52.381 0.00 0.00 36.89 4.79
23 24 1.247567 CCACAAGGAAATGAAGCCGT 58.752 50.000 0.00 0.00 36.89 5.68
24 25 1.068333 CACCACAAGGAAATGAAGCCG 60.068 52.381 0.00 0.00 38.69 5.52
25 26 1.273327 CCACCACAAGGAAATGAAGCC 59.727 52.381 0.00 0.00 38.69 4.35
26 27 2.229784 CTCCACCACAAGGAAATGAAGC 59.770 50.000 0.00 0.00 38.69 3.86
27 28 3.490348 ACTCCACCACAAGGAAATGAAG 58.510 45.455 0.00 0.00 38.69 3.02
28 29 3.593442 ACTCCACCACAAGGAAATGAA 57.407 42.857 0.00 0.00 38.69 2.57
29 30 4.715534 TTACTCCACCACAAGGAAATGA 57.284 40.909 0.00 0.00 38.69 2.57
30 31 4.827284 AGTTTACTCCACCACAAGGAAATG 59.173 41.667 0.00 0.00 38.69 2.32
31 32 5.061721 AGTTTACTCCACCACAAGGAAAT 57.938 39.130 0.00 0.00 38.69 2.17
32 33 4.513406 AGTTTACTCCACCACAAGGAAA 57.487 40.909 0.00 0.00 38.69 3.13
33 34 4.409574 TGTAGTTTACTCCACCACAAGGAA 59.590 41.667 0.00 0.00 38.69 3.36
34 35 3.968649 TGTAGTTTACTCCACCACAAGGA 59.031 43.478 0.00 0.00 38.69 3.36
35 36 4.062991 GTGTAGTTTACTCCACCACAAGG 58.937 47.826 0.00 0.00 42.21 3.61
36 37 4.699637 TGTGTAGTTTACTCCACCACAAG 58.300 43.478 3.57 0.00 32.60 3.16
37 38 4.757019 TGTGTAGTTTACTCCACCACAA 57.243 40.909 3.57 0.00 32.60 3.33
38 39 4.757019 TTGTGTAGTTTACTCCACCACA 57.243 40.909 3.57 2.95 32.60 4.17
39 40 4.877251 TGTTTGTGTAGTTTACTCCACCAC 59.123 41.667 3.57 1.99 32.60 4.16
40 41 5.100344 TGTTTGTGTAGTTTACTCCACCA 57.900 39.130 3.57 0.00 32.60 4.17
41 42 5.354792 TGTTGTTTGTGTAGTTTACTCCACC 59.645 40.000 3.57 0.00 32.60 4.61
42 43 6.425577 TGTTGTTTGTGTAGTTTACTCCAC 57.574 37.500 0.00 0.00 33.97 4.02
43 44 7.450124 TTTGTTGTTTGTGTAGTTTACTCCA 57.550 32.000 0.00 0.00 0.00 3.86
44 45 8.920509 ATTTTGTTGTTTGTGTAGTTTACTCC 57.079 30.769 0.00 0.00 0.00 3.85
46 47 8.652463 GCAATTTTGTTGTTTGTGTAGTTTACT 58.348 29.630 0.00 0.00 0.00 2.24
47 48 8.436200 TGCAATTTTGTTGTTTGTGTAGTTTAC 58.564 29.630 0.00 0.00 0.00 2.01
48 49 8.534333 TGCAATTTTGTTGTTTGTGTAGTTTA 57.466 26.923 0.00 0.00 0.00 2.01
49 50 7.426929 TGCAATTTTGTTGTTTGTGTAGTTT 57.573 28.000 0.00 0.00 0.00 2.66
50 51 6.402011 GCTGCAATTTTGTTGTTTGTGTAGTT 60.402 34.615 0.00 0.00 0.00 2.24
51 52 5.063312 GCTGCAATTTTGTTGTTTGTGTAGT 59.937 36.000 0.00 0.00 0.00 2.73
52 53 5.291614 AGCTGCAATTTTGTTGTTTGTGTAG 59.708 36.000 1.02 0.00 0.00 2.74
53 54 5.063186 CAGCTGCAATTTTGTTGTTTGTGTA 59.937 36.000 0.00 0.00 0.00 2.90
54 55 4.002316 AGCTGCAATTTTGTTGTTTGTGT 58.998 34.783 1.02 0.00 0.00 3.72
55 56 4.336101 CAGCTGCAATTTTGTTGTTTGTG 58.664 39.130 0.00 0.00 0.00 3.33
56 57 3.374678 CCAGCTGCAATTTTGTTGTTTGT 59.625 39.130 8.66 0.00 0.00 2.83
57 58 3.374678 ACCAGCTGCAATTTTGTTGTTTG 59.625 39.130 8.66 0.00 0.00 2.93
58 59 3.608796 ACCAGCTGCAATTTTGTTGTTT 58.391 36.364 8.66 0.00 0.00 2.83
59 60 3.197265 GACCAGCTGCAATTTTGTTGTT 58.803 40.909 8.66 0.00 0.00 2.83
60 61 2.168106 TGACCAGCTGCAATTTTGTTGT 59.832 40.909 8.66 0.00 0.00 3.32
61 62 2.540931 GTGACCAGCTGCAATTTTGTTG 59.459 45.455 8.66 0.00 0.00 3.33
62 63 2.431782 AGTGACCAGCTGCAATTTTGTT 59.568 40.909 8.66 0.00 0.00 2.83
63 64 2.034124 AGTGACCAGCTGCAATTTTGT 58.966 42.857 8.66 0.00 0.00 2.83
64 65 2.669364 GAGTGACCAGCTGCAATTTTG 58.331 47.619 8.66 0.00 0.00 2.44
65 66 1.267806 CGAGTGACCAGCTGCAATTTT 59.732 47.619 8.66 0.00 0.00 1.82
66 67 0.877071 CGAGTGACCAGCTGCAATTT 59.123 50.000 8.66 0.00 0.00 1.82
67 68 1.580845 GCGAGTGACCAGCTGCAATT 61.581 55.000 8.66 0.00 0.00 2.32
68 69 2.037136 GCGAGTGACCAGCTGCAAT 61.037 57.895 8.66 0.20 0.00 3.56
69 70 2.665008 AAGCGAGTGACCAGCTGCAA 62.665 55.000 8.66 0.00 41.53 4.08
70 71 3.169155 AAGCGAGTGACCAGCTGCA 62.169 57.895 8.66 0.00 41.53 4.41
71 72 2.358003 AAGCGAGTGACCAGCTGC 60.358 61.111 8.66 0.00 41.53 5.25
72 73 0.390866 ATCAAGCGAGTGACCAGCTG 60.391 55.000 6.78 6.78 41.53 4.24
73 74 0.322975 AATCAAGCGAGTGACCAGCT 59.677 50.000 0.00 0.00 43.90 4.24
74 75 0.445436 CAATCAAGCGAGTGACCAGC 59.555 55.000 0.00 0.00 39.62 4.85
75 76 1.728971 GACAATCAAGCGAGTGACCAG 59.271 52.381 0.00 0.00 39.62 4.00
76 77 1.795768 GACAATCAAGCGAGTGACCA 58.204 50.000 0.00 0.00 39.62 4.02
77 78 0.716108 CGACAATCAAGCGAGTGACC 59.284 55.000 0.00 0.00 39.62 4.02
78 79 1.387084 GTCGACAATCAAGCGAGTGAC 59.613 52.381 11.55 0.00 39.62 3.67
79 80 1.000717 TGTCGACAATCAAGCGAGTGA 60.001 47.619 17.62 0.00 39.62 3.41
80 81 1.125021 GTGTCGACAATCAAGCGAGTG 59.875 52.381 21.95 0.00 42.91 3.51
81 82 1.419374 GTGTCGACAATCAAGCGAGT 58.581 50.000 21.95 0.00 34.41 4.18
82 83 0.363512 CGTGTCGACAATCAAGCGAG 59.636 55.000 21.95 0.00 34.41 5.03
83 84 0.039888 TCGTGTCGACAATCAAGCGA 60.040 50.000 21.95 20.14 0.00 4.93
84 85 0.992072 ATCGTGTCGACAATCAAGCG 59.008 50.000 21.95 18.08 39.18 4.68
85 86 3.179830 AGTATCGTGTCGACAATCAAGC 58.820 45.455 21.95 5.62 39.18 4.01
86 87 5.227391 GTGTAGTATCGTGTCGACAATCAAG 59.773 44.000 21.95 9.61 39.18 3.02
87 88 5.090757 GTGTAGTATCGTGTCGACAATCAA 58.909 41.667 21.95 6.35 39.18 2.57
88 89 4.437794 GGTGTAGTATCGTGTCGACAATCA 60.438 45.833 21.95 7.34 39.18 2.57
89 90 4.033684 GGTGTAGTATCGTGTCGACAATC 58.966 47.826 21.95 8.05 39.18 2.67
90 91 3.693085 AGGTGTAGTATCGTGTCGACAAT 59.307 43.478 21.95 13.89 39.18 2.71
91 92 3.076621 AGGTGTAGTATCGTGTCGACAA 58.923 45.455 21.95 6.03 39.18 3.18
92 93 2.703416 AGGTGTAGTATCGTGTCGACA 58.297 47.619 15.76 15.76 39.18 4.35
93 94 3.618594 TGTAGGTGTAGTATCGTGTCGAC 59.381 47.826 9.11 9.11 39.18 4.20
94 95 3.860641 TGTAGGTGTAGTATCGTGTCGA 58.139 45.455 0.00 0.00 41.13 4.20
95 96 3.867493 TCTGTAGGTGTAGTATCGTGTCG 59.133 47.826 0.00 0.00 0.00 4.35
96 97 5.808042 TTCTGTAGGTGTAGTATCGTGTC 57.192 43.478 0.00 0.00 0.00 3.67
97 98 6.770746 ATTTCTGTAGGTGTAGTATCGTGT 57.229 37.500 0.00 0.00 0.00 4.49
98 99 7.856398 CAGTATTTCTGTAGGTGTAGTATCGTG 59.144 40.741 0.00 0.00 39.17 4.35
99 100 7.772292 TCAGTATTTCTGTAGGTGTAGTATCGT 59.228 37.037 0.00 0.00 43.97 3.73
100 101 8.151141 TCAGTATTTCTGTAGGTGTAGTATCG 57.849 38.462 0.00 0.00 43.97 2.92
101 102 9.122779 ACTCAGTATTTCTGTAGGTGTAGTATC 57.877 37.037 0.00 0.00 43.97 2.24
103 104 9.964354 TTACTCAGTATTTCTGTAGGTGTAGTA 57.036 33.333 0.00 0.00 43.97 1.82
104 105 8.874744 TTACTCAGTATTTCTGTAGGTGTAGT 57.125 34.615 0.00 0.00 43.97 2.73
115 116 9.798994 CGTGTAGGTTATTTACTCAGTATTTCT 57.201 33.333 0.00 0.00 0.00 2.52
116 117 9.578439 ACGTGTAGGTTATTTACTCAGTATTTC 57.422 33.333 0.00 0.00 0.00 2.17
117 118 9.362539 CACGTGTAGGTTATTTACTCAGTATTT 57.637 33.333 7.58 0.00 0.00 1.40
118 119 8.526147 ACACGTGTAGGTTATTTACTCAGTATT 58.474 33.333 21.98 0.00 0.00 1.89
119 120 7.972277 CACACGTGTAGGTTATTTACTCAGTAT 59.028 37.037 22.90 0.00 0.00 2.12
124 125 5.473039 ACCACACGTGTAGGTTATTTACTC 58.527 41.667 26.83 0.00 29.58 2.59
169 170 2.971660 TCGGCTCCATTCGACATTTA 57.028 45.000 0.00 0.00 0.00 1.40
175 176 1.065782 TCCAAATTCGGCTCCATTCGA 60.066 47.619 0.00 0.00 0.00 3.71
177 178 2.755103 AGTTCCAAATTCGGCTCCATTC 59.245 45.455 0.00 0.00 0.00 2.67
194 196 8.917415 ACTGAAGAGTTTGAATTTTGAAGTTC 57.083 30.769 0.00 0.00 0.00 3.01
230 234 4.518970 TCAAATTCCCTCTGTTCTTTTCGG 59.481 41.667 0.00 0.00 0.00 4.30
232 236 6.442112 CAGTCAAATTCCCTCTGTTCTTTTC 58.558 40.000 0.00 0.00 0.00 2.29
243 248 2.035832 CGTTTTGCCAGTCAAATTCCCT 59.964 45.455 0.00 0.00 43.53 4.20
254 259 7.163520 CGTTGTTAATATATGACGTTTTGCCAG 59.836 37.037 0.00 0.00 0.00 4.85
255 260 6.962116 CGTTGTTAATATATGACGTTTTGCCA 59.038 34.615 0.00 0.00 0.00 4.92
256 261 7.181418 TCGTTGTTAATATATGACGTTTTGCC 58.819 34.615 0.00 0.00 32.81 4.52
258 263 9.531412 TGTTCGTTGTTAATATATGACGTTTTG 57.469 29.630 0.00 0.00 32.81 2.44
259 264 9.749490 CTGTTCGTTGTTAATATATGACGTTTT 57.251 29.630 0.00 0.00 32.81 2.43
263 268 7.839358 CACACTGTTCGTTGTTAATATATGACG 59.161 37.037 0.00 0.00 0.00 4.35
264 269 8.865978 TCACACTGTTCGTTGTTAATATATGAC 58.134 33.333 0.00 0.00 0.00 3.06
265 270 8.989653 TCACACTGTTCGTTGTTAATATATGA 57.010 30.769 0.00 0.00 0.00 2.15
266 271 9.083080 TCTCACACTGTTCGTTGTTAATATATG 57.917 33.333 0.00 0.00 0.00 1.78
267 272 9.817809 ATCTCACACTGTTCGTTGTTAATATAT 57.182 29.630 0.00 0.00 0.00 0.86
276 282 5.444613 CCGATAAATCTCACACTGTTCGTTG 60.445 44.000 0.00 0.00 0.00 4.10
277 283 4.625742 CCGATAAATCTCACACTGTTCGTT 59.374 41.667 0.00 0.00 0.00 3.85
278 284 4.174009 CCGATAAATCTCACACTGTTCGT 58.826 43.478 0.00 0.00 0.00 3.85
279 285 4.174009 ACCGATAAATCTCACACTGTTCG 58.826 43.478 0.00 0.00 0.00 3.95
348 354 1.218230 GAGGGCTGACGAATCGATGC 61.218 60.000 10.55 9.98 0.00 3.91
358 364 0.106708 TGTGAACTGTGAGGGCTGAC 59.893 55.000 0.00 0.00 0.00 3.51
482 5337 3.591977 AGTTAAGGGCCCTGTGACTAATT 59.408 43.478 29.50 13.75 0.00 1.40
490 5345 4.017499 ACAATTCATAGTTAAGGGCCCTGT 60.017 41.667 29.50 18.18 0.00 4.00
529 5384 1.160989 AAGCACACACGAAACACACA 58.839 45.000 0.00 0.00 0.00 3.72
536 5391 1.067142 CCTAGGCTAAGCACACACGAA 60.067 52.381 0.00 0.00 0.00 3.85
538 5393 0.246635 ACCTAGGCTAAGCACACACG 59.753 55.000 9.30 0.00 0.00 4.49
540 5395 3.321111 GCTATACCTAGGCTAAGCACACA 59.679 47.826 19.69 0.00 0.00 3.72
545 5400 4.274978 AGCTAGCTATACCTAGGCTAAGC 58.725 47.826 17.69 17.82 37.97 3.09
546 5401 6.655930 AGTAGCTAGCTATACCTAGGCTAAG 58.344 44.000 26.59 4.53 37.97 2.18
547 5402 6.352910 GGAGTAGCTAGCTATACCTAGGCTAA 60.353 46.154 26.59 0.00 37.97 3.09
548 5403 5.130809 GGAGTAGCTAGCTATACCTAGGCTA 59.869 48.000 26.59 3.01 36.23 3.93
549 5404 4.080186 GGAGTAGCTAGCTATACCTAGGCT 60.080 50.000 26.59 16.00 36.23 4.58
550 5405 4.201657 GGAGTAGCTAGCTATACCTAGGC 58.798 52.174 26.59 11.60 36.23 3.93
551 5406 4.475747 AGGGAGTAGCTAGCTATACCTAGG 59.524 50.000 30.74 7.41 36.23 3.02
552 5407 5.397109 GGAGGGAGTAGCTAGCTATACCTAG 60.397 52.000 29.43 0.00 38.24 3.02
553 5408 4.474287 GGAGGGAGTAGCTAGCTATACCTA 59.526 50.000 29.43 10.75 32.72 3.08
554 5409 3.267551 GGAGGGAGTAGCTAGCTATACCT 59.732 52.174 29.63 29.63 34.12 3.08
567 5422 1.064906 CACACCTAGACGGAGGGAGTA 60.065 57.143 5.42 0.00 41.36 2.59
568 5423 0.323542 CACACCTAGACGGAGGGAGT 60.324 60.000 5.42 1.31 41.36 3.85
569 5424 0.323542 ACACACCTAGACGGAGGGAG 60.324 60.000 5.42 0.78 41.36 4.30
570 5425 0.994247 TACACACCTAGACGGAGGGA 59.006 55.000 5.42 0.00 41.36 4.20
571 5426 1.749634 CTTACACACCTAGACGGAGGG 59.250 57.143 5.42 0.00 41.36 4.30
572 5427 2.422832 GACTTACACACCTAGACGGAGG 59.577 54.545 0.00 0.00 42.89 4.30
573 5428 3.079578 TGACTTACACACCTAGACGGAG 58.920 50.000 0.00 0.00 36.31 4.63
574 5429 3.144657 TGACTTACACACCTAGACGGA 57.855 47.619 0.00 0.00 36.31 4.69
575 5430 3.695060 AGATGACTTACACACCTAGACGG 59.305 47.826 0.00 0.00 39.35 4.79
576 5431 4.966965 AGATGACTTACACACCTAGACG 57.033 45.455 0.00 0.00 0.00 4.18
577 5432 7.997482 TCATAAGATGACTTACACACCTAGAC 58.003 38.462 0.00 0.00 40.71 2.59
578 5433 8.589701 TTCATAAGATGACTTACACACCTAGA 57.410 34.615 0.00 0.00 40.71 2.43
579 5434 9.653287 TTTTCATAAGATGACTTACACACCTAG 57.347 33.333 0.00 0.00 40.71 3.02
581 5436 9.167311 GATTTTCATAAGATGACTTACACACCT 57.833 33.333 0.00 0.00 40.71 4.00
582 5437 8.946085 TGATTTTCATAAGATGACTTACACACC 58.054 33.333 0.00 0.00 40.71 4.16
605 5460 9.956640 TGCCTAAATGTTTTGGAAATATTTGAT 57.043 25.926 5.17 0.00 35.47 2.57
606 5461 9.213799 GTGCCTAAATGTTTTGGAAATATTTGA 57.786 29.630 5.17 0.00 35.47 2.69
607 5462 8.167985 CGTGCCTAAATGTTTTGGAAATATTTG 58.832 33.333 5.17 7.60 35.47 2.32
608 5463 7.333174 CCGTGCCTAAATGTTTTGGAAATATTT 59.667 33.333 0.00 0.00 35.47 1.40
609 5464 6.816140 CCGTGCCTAAATGTTTTGGAAATATT 59.184 34.615 9.62 0.00 35.47 1.28
610 5465 6.071051 ACCGTGCCTAAATGTTTTGGAAATAT 60.071 34.615 9.62 0.00 35.47 1.28
611 5466 5.244178 ACCGTGCCTAAATGTTTTGGAAATA 59.756 36.000 9.62 0.00 35.47 1.40
612 5467 4.039852 ACCGTGCCTAAATGTTTTGGAAAT 59.960 37.500 9.62 0.00 35.47 2.17
613 5468 3.385111 ACCGTGCCTAAATGTTTTGGAAA 59.615 39.130 9.62 0.00 35.47 3.13
614 5469 2.959707 ACCGTGCCTAAATGTTTTGGAA 59.040 40.909 9.62 0.00 35.47 3.53
615 5470 2.294791 CACCGTGCCTAAATGTTTTGGA 59.705 45.455 9.62 0.00 35.47 3.53
616 5471 2.671596 CACCGTGCCTAAATGTTTTGG 58.328 47.619 2.22 2.22 36.36 3.28
617 5472 2.058057 GCACCGTGCCTAAATGTTTTG 58.942 47.619 12.80 0.00 37.42 2.44
618 5473 1.683917 TGCACCGTGCCTAAATGTTTT 59.316 42.857 20.67 0.00 44.23 2.43
619 5474 1.323412 TGCACCGTGCCTAAATGTTT 58.677 45.000 20.67 0.00 44.23 2.83
620 5475 1.544724 ATGCACCGTGCCTAAATGTT 58.455 45.000 20.67 0.00 44.23 2.71
621 5476 1.544724 AATGCACCGTGCCTAAATGT 58.455 45.000 20.67 0.00 44.23 2.71
622 5477 3.773860 TTAATGCACCGTGCCTAAATG 57.226 42.857 20.67 0.00 44.23 2.32
623 5478 5.127031 AGAATTTAATGCACCGTGCCTAAAT 59.873 36.000 22.82 22.82 44.23 1.40
624 5479 4.461081 AGAATTTAATGCACCGTGCCTAAA 59.539 37.500 20.67 20.98 44.23 1.85
625 5480 4.013728 AGAATTTAATGCACCGTGCCTAA 58.986 39.130 20.67 14.49 44.23 2.69
626 5481 3.616219 AGAATTTAATGCACCGTGCCTA 58.384 40.909 20.67 9.40 44.23 3.93
627 5482 2.446435 AGAATTTAATGCACCGTGCCT 58.554 42.857 20.67 8.34 44.23 4.75
628 5483 2.939460 AGAATTTAATGCACCGTGCC 57.061 45.000 20.67 2.68 44.23 5.01
629 5484 3.377172 AGGTAGAATTTAATGCACCGTGC 59.623 43.478 16.93 16.93 45.29 5.34
630 5485 5.106317 ACAAGGTAGAATTTAATGCACCGTG 60.106 40.000 13.97 13.97 40.13 4.94
631 5486 5.007682 ACAAGGTAGAATTTAATGCACCGT 58.992 37.500 0.00 0.00 0.00 4.83
632 5487 5.560966 ACAAGGTAGAATTTAATGCACCG 57.439 39.130 0.00 0.00 0.00 4.94
633 5488 7.602753 AGAAACAAGGTAGAATTTAATGCACC 58.397 34.615 0.00 0.00 0.00 5.01
634 5489 8.915654 CAAGAAACAAGGTAGAATTTAATGCAC 58.084 33.333 0.00 0.00 0.00 4.57
635 5490 8.637986 ACAAGAAACAAGGTAGAATTTAATGCA 58.362 29.630 0.00 0.00 0.00 3.96
636 5491 9.476202 AACAAGAAACAAGGTAGAATTTAATGC 57.524 29.630 0.00 0.00 0.00 3.56
641 5496 9.586435 CAAGAAACAAGAAACAAGGTAGAATTT 57.414 29.630 0.00 0.00 0.00 1.82
642 5497 8.966868 TCAAGAAACAAGAAACAAGGTAGAATT 58.033 29.630 0.00 0.00 0.00 2.17
643 5498 8.406297 GTCAAGAAACAAGAAACAAGGTAGAAT 58.594 33.333 0.00 0.00 0.00 2.40
644 5499 7.392113 TGTCAAGAAACAAGAAACAAGGTAGAA 59.608 33.333 0.00 0.00 0.00 2.10
645 5500 6.882140 TGTCAAGAAACAAGAAACAAGGTAGA 59.118 34.615 0.00 0.00 0.00 2.59
646 5501 7.083875 TGTCAAGAAACAAGAAACAAGGTAG 57.916 36.000 0.00 0.00 0.00 3.18
647 5502 7.639113 ATGTCAAGAAACAAGAAACAAGGTA 57.361 32.000 0.00 0.00 31.81 3.08
648 5503 5.975693 TGTCAAGAAACAAGAAACAAGGT 57.024 34.783 0.00 0.00 0.00 3.50
649 5504 8.352201 TGATATGTCAAGAAACAAGAAACAAGG 58.648 33.333 0.00 0.00 31.81 3.61
650 5505 9.734620 TTGATATGTCAAGAAACAAGAAACAAG 57.265 29.630 0.03 0.00 39.36 3.16
651 5506 9.515020 GTTGATATGTCAAGAAACAAGAAACAA 57.485 29.630 4.98 0.00 44.58 2.83
652 5507 8.134895 GGTTGATATGTCAAGAAACAAGAAACA 58.865 33.333 4.98 0.00 44.58 2.83
653 5508 8.134895 TGGTTGATATGTCAAGAAACAAGAAAC 58.865 33.333 4.98 0.00 44.58 2.78
654 5509 8.231692 TGGTTGATATGTCAAGAAACAAGAAA 57.768 30.769 4.98 0.00 44.58 2.52
655 5510 7.815840 TGGTTGATATGTCAAGAAACAAGAA 57.184 32.000 4.98 0.00 44.58 2.52
656 5511 7.815840 TTGGTTGATATGTCAAGAAACAAGA 57.184 32.000 4.98 0.00 44.58 3.02
668 5523 9.312904 CCCCATATCTTTTATTGGTTGATATGT 57.687 33.333 15.54 0.00 42.18 2.29
669 5524 9.312904 ACCCCATATCTTTTATTGGTTGATATG 57.687 33.333 11.93 11.93 42.80 1.78
670 5525 9.312904 CACCCCATATCTTTTATTGGTTGATAT 57.687 33.333 0.00 0.00 32.52 1.63
671 5526 8.285891 ACACCCCATATCTTTTATTGGTTGATA 58.714 33.333 0.00 0.00 0.00 2.15
672 5527 7.069826 CACACCCCATATCTTTTATTGGTTGAT 59.930 37.037 0.00 0.00 0.00 2.57
673 5528 6.379703 CACACCCCATATCTTTTATTGGTTGA 59.620 38.462 0.00 0.00 0.00 3.18
674 5529 6.572519 CACACCCCATATCTTTTATTGGTTG 58.427 40.000 0.00 0.00 0.00 3.77
675 5530 5.128663 GCACACCCCATATCTTTTATTGGTT 59.871 40.000 0.00 0.00 0.00 3.67
676 5531 4.649218 GCACACCCCATATCTTTTATTGGT 59.351 41.667 0.00 0.00 0.00 3.67
677 5532 4.648762 TGCACACCCCATATCTTTTATTGG 59.351 41.667 0.00 0.00 0.00 3.16
678 5533 5.850557 TGCACACCCCATATCTTTTATTG 57.149 39.130 0.00 0.00 0.00 1.90
679 5534 5.305128 CCATGCACACCCCATATCTTTTATT 59.695 40.000 0.00 0.00 0.00 1.40
680 5535 4.834496 CCATGCACACCCCATATCTTTTAT 59.166 41.667 0.00 0.00 0.00 1.40
681 5536 4.214310 CCATGCACACCCCATATCTTTTA 58.786 43.478 0.00 0.00 0.00 1.52
682 5537 3.033184 CCATGCACACCCCATATCTTTT 58.967 45.455 0.00 0.00 0.00 2.27
683 5538 2.024080 ACCATGCACACCCCATATCTTT 60.024 45.455 0.00 0.00 0.00 2.52
684 5539 1.570501 ACCATGCACACCCCATATCTT 59.429 47.619 0.00 0.00 0.00 2.40
685 5540 1.225373 ACCATGCACACCCCATATCT 58.775 50.000 0.00 0.00 0.00 1.98
686 5541 2.071778 AACCATGCACACCCCATATC 57.928 50.000 0.00 0.00 0.00 1.63
687 5542 2.548464 AAACCATGCACACCCCATAT 57.452 45.000 0.00 0.00 0.00 1.78
688 5543 2.317371 AAAACCATGCACACCCCATA 57.683 45.000 0.00 0.00 0.00 2.74
689 5544 2.317371 TAAAACCATGCACACCCCAT 57.683 45.000 0.00 0.00 0.00 4.00
690 5545 2.088104 TTAAAACCATGCACACCCCA 57.912 45.000 0.00 0.00 0.00 4.96
691 5546 2.564947 TCATTAAAACCATGCACACCCC 59.435 45.455 0.00 0.00 0.00 4.95
692 5547 3.258123 AGTCATTAAAACCATGCACACCC 59.742 43.478 0.00 0.00 0.00 4.61
693 5548 4.519540 AGTCATTAAAACCATGCACACC 57.480 40.909 0.00 0.00 0.00 4.16
694 5549 5.527951 TCAAGTCATTAAAACCATGCACAC 58.472 37.500 0.00 0.00 0.00 3.82
695 5550 5.534278 TCTCAAGTCATTAAAACCATGCACA 59.466 36.000 0.00 0.00 0.00 4.57
696 5551 5.858581 GTCTCAAGTCATTAAAACCATGCAC 59.141 40.000 0.00 0.00 0.00 4.57
697 5552 5.769662 AGTCTCAAGTCATTAAAACCATGCA 59.230 36.000 0.00 0.00 0.00 3.96
698 5553 6.259550 AGTCTCAAGTCATTAAAACCATGC 57.740 37.500 0.00 0.00 0.00 4.06
699 5554 9.166173 TGATAGTCTCAAGTCATTAAAACCATG 57.834 33.333 0.00 0.00 0.00 3.66
700 5555 9.739276 TTGATAGTCTCAAGTCATTAAAACCAT 57.261 29.630 0.00 0.00 38.97 3.55
701 5556 9.567776 TTTGATAGTCTCAAGTCATTAAAACCA 57.432 29.630 0.00 0.00 44.48 3.67
702 5557 9.827411 GTTTGATAGTCTCAAGTCATTAAAACC 57.173 33.333 0.00 0.00 44.48 3.27
705 5560 8.708742 CGTGTTTGATAGTCTCAAGTCATTAAA 58.291 33.333 0.00 0.00 44.48 1.52
706 5561 8.085909 TCGTGTTTGATAGTCTCAAGTCATTAA 58.914 33.333 0.00 0.00 44.48 1.40
707 5562 7.541091 GTCGTGTTTGATAGTCTCAAGTCATTA 59.459 37.037 0.00 0.00 44.48 1.90
708 5563 6.366332 GTCGTGTTTGATAGTCTCAAGTCATT 59.634 38.462 0.00 0.00 44.48 2.57
709 5564 5.864474 GTCGTGTTTGATAGTCTCAAGTCAT 59.136 40.000 0.00 0.00 44.48 3.06
710 5565 5.220381 GTCGTGTTTGATAGTCTCAAGTCA 58.780 41.667 0.00 0.00 44.48 3.41
711 5566 5.220381 TGTCGTGTTTGATAGTCTCAAGTC 58.780 41.667 0.00 0.00 44.48 3.01
712 5567 5.196341 TGTCGTGTTTGATAGTCTCAAGT 57.804 39.130 0.00 0.00 44.48 3.16
713 5568 5.445142 GCATGTCGTGTTTGATAGTCTCAAG 60.445 44.000 0.00 0.00 44.48 3.02
714 5569 4.388773 GCATGTCGTGTTTGATAGTCTCAA 59.611 41.667 0.00 0.00 42.15 3.02
715 5570 3.926527 GCATGTCGTGTTTGATAGTCTCA 59.073 43.478 0.00 0.00 0.00 3.27
716 5571 3.926527 TGCATGTCGTGTTTGATAGTCTC 59.073 43.478 0.00 0.00 0.00 3.36
717 5572 3.925379 TGCATGTCGTGTTTGATAGTCT 58.075 40.909 0.00 0.00 0.00 3.24
718 5573 3.679980 ACTGCATGTCGTGTTTGATAGTC 59.320 43.478 0.00 0.00 0.00 2.59
719 5574 3.433274 CACTGCATGTCGTGTTTGATAGT 59.567 43.478 7.95 0.00 0.00 2.12
720 5575 3.181517 CCACTGCATGTCGTGTTTGATAG 60.182 47.826 13.12 0.00 0.00 2.08
721 5576 2.741517 CCACTGCATGTCGTGTTTGATA 59.258 45.455 13.12 0.00 0.00 2.15
722 5577 1.536766 CCACTGCATGTCGTGTTTGAT 59.463 47.619 13.12 0.00 0.00 2.57
723 5578 0.943673 CCACTGCATGTCGTGTTTGA 59.056 50.000 13.12 0.00 0.00 2.69
724 5579 0.662619 ACCACTGCATGTCGTGTTTG 59.337 50.000 13.12 3.87 0.00 2.93
725 5580 1.388547 AACCACTGCATGTCGTGTTT 58.611 45.000 13.12 5.09 0.00 2.83
726 5581 2.143122 CTAACCACTGCATGTCGTGTT 58.857 47.619 13.12 10.39 0.00 3.32
727 5582 1.070134 ACTAACCACTGCATGTCGTGT 59.930 47.619 13.12 2.00 0.00 4.49
728 5583 1.795768 ACTAACCACTGCATGTCGTG 58.204 50.000 8.87 8.87 0.00 4.35
729 5584 2.224185 TGAACTAACCACTGCATGTCGT 60.224 45.455 0.00 0.00 0.00 4.34
730 5585 2.412870 TGAACTAACCACTGCATGTCG 58.587 47.619 0.00 0.00 0.00 4.35
731 5586 4.726416 CAATGAACTAACCACTGCATGTC 58.274 43.478 0.00 0.00 0.00 3.06
732 5587 3.057315 GCAATGAACTAACCACTGCATGT 60.057 43.478 0.00 0.00 0.00 3.21
733 5588 3.057386 TGCAATGAACTAACCACTGCATG 60.057 43.478 0.00 0.00 33.65 4.06
734 5589 3.156293 TGCAATGAACTAACCACTGCAT 58.844 40.909 0.00 0.00 33.65 3.96
735 5590 2.580962 TGCAATGAACTAACCACTGCA 58.419 42.857 0.00 0.00 36.06 4.41
736 5591 3.855689 ATGCAATGAACTAACCACTGC 57.144 42.857 0.00 0.00 0.00 4.40
770 5625 8.869897 CGAGAGTACTTAATGTTCATTTGCTAA 58.130 33.333 0.00 0.00 0.00 3.09
771 5626 8.033038 ACGAGAGTACTTAATGTTCATTTGCTA 58.967 33.333 0.00 0.00 46.88 3.49
772 5627 6.874134 ACGAGAGTACTTAATGTTCATTTGCT 59.126 34.615 0.00 0.00 46.88 3.91
773 5628 7.061752 ACGAGAGTACTTAATGTTCATTTGC 57.938 36.000 0.00 0.00 46.88 3.68
788 5643 8.898556 CCAAAGAGGAAGGAAAAACGAGAGTAC 61.899 44.444 0.00 0.00 42.52 2.73
789 5644 6.962957 CCAAAGAGGAAGGAAAAACGAGAGTA 60.963 42.308 0.00 0.00 42.52 2.59
790 5645 6.204030 CCAAAGAGGAAGGAAAAACGAGAGT 61.204 44.000 0.00 0.00 44.95 3.24
791 5646 4.214332 CCAAAGAGGAAGGAAAAACGAGAG 59.786 45.833 0.00 0.00 41.22 3.20
792 5647 4.134563 CCAAAGAGGAAGGAAAAACGAGA 58.865 43.478 0.00 0.00 41.22 4.04
793 5648 3.883489 ACCAAAGAGGAAGGAAAAACGAG 59.117 43.478 0.00 0.00 41.22 4.18
794 5649 3.881089 GACCAAAGAGGAAGGAAAAACGA 59.119 43.478 0.00 0.00 41.22 3.85
795 5650 3.630312 TGACCAAAGAGGAAGGAAAAACG 59.370 43.478 0.00 0.00 41.22 3.60
796 5651 4.497507 CGTGACCAAAGAGGAAGGAAAAAC 60.498 45.833 0.00 0.00 41.22 2.43
797 5652 3.630312 CGTGACCAAAGAGGAAGGAAAAA 59.370 43.478 0.00 0.00 41.22 1.94
798 5653 3.211045 CGTGACCAAAGAGGAAGGAAAA 58.789 45.455 0.00 0.00 41.22 2.29
799 5654 2.486548 CCGTGACCAAAGAGGAAGGAAA 60.487 50.000 0.00 0.00 41.22 3.13
800 5655 1.071699 CCGTGACCAAAGAGGAAGGAA 59.928 52.381 0.00 0.00 41.22 3.36
801 5656 0.685097 CCGTGACCAAAGAGGAAGGA 59.315 55.000 0.00 0.00 41.22 3.36
802 5657 0.396811 ACCGTGACCAAAGAGGAAGG 59.603 55.000 0.00 0.00 41.22 3.46
803 5658 1.512926 CACCGTGACCAAAGAGGAAG 58.487 55.000 0.00 0.00 41.22 3.46
804 5659 0.534203 GCACCGTGACCAAAGAGGAA 60.534 55.000 1.65 0.00 41.22 3.36
805 5660 1.070786 GCACCGTGACCAAAGAGGA 59.929 57.895 1.65 0.00 41.22 3.71
806 5661 1.227823 TGCACCGTGACCAAAGAGG 60.228 57.895 1.65 0.00 45.67 3.69
807 5662 0.813610 TGTGCACCGTGACCAAAGAG 60.814 55.000 15.69 0.00 0.00 2.85
808 5663 0.393132 TTGTGCACCGTGACCAAAGA 60.393 50.000 15.69 0.00 0.00 2.52
809 5664 0.248458 GTTGTGCACCGTGACCAAAG 60.248 55.000 15.69 0.00 0.00 2.77
810 5665 1.658686 GGTTGTGCACCGTGACCAAA 61.659 55.000 15.69 0.00 35.12 3.28
811 5666 2.115911 GGTTGTGCACCGTGACCAA 61.116 57.895 15.69 1.00 35.12 3.67
812 5667 2.515057 GGTTGTGCACCGTGACCA 60.515 61.111 15.69 0.00 35.12 4.02
820 5675 6.017440 TGAGTAAGTCATTTTAGGTTGTGCAC 60.017 38.462 10.75 10.75 0.00 4.57
821 5676 6.017440 GTGAGTAAGTCATTTTAGGTTGTGCA 60.017 38.462 0.00 0.00 37.56 4.57
822 5677 6.371389 GTGAGTAAGTCATTTTAGGTTGTGC 58.629 40.000 0.00 0.00 37.56 4.57
823 5678 6.710744 AGGTGAGTAAGTCATTTTAGGTTGTG 59.289 38.462 0.00 0.00 37.56 3.33
824 5679 6.838382 AGGTGAGTAAGTCATTTTAGGTTGT 58.162 36.000 0.00 0.00 37.56 3.32
825 5680 8.311836 TCTAGGTGAGTAAGTCATTTTAGGTTG 58.688 37.037 0.00 0.00 37.56 3.77
826 5681 8.312564 GTCTAGGTGAGTAAGTCATTTTAGGTT 58.687 37.037 0.00 0.00 37.56 3.50
827 5682 7.362747 CGTCTAGGTGAGTAAGTCATTTTAGGT 60.363 40.741 0.00 0.00 37.56 3.08
828 5683 6.973474 CGTCTAGGTGAGTAAGTCATTTTAGG 59.027 42.308 0.00 0.00 37.56 2.69
829 5684 6.973474 CCGTCTAGGTGAGTAAGTCATTTTAG 59.027 42.308 0.00 0.00 37.56 1.85
830 5685 6.660521 TCCGTCTAGGTGAGTAAGTCATTTTA 59.339 38.462 0.00 0.00 41.99 1.52
831 5686 5.479375 TCCGTCTAGGTGAGTAAGTCATTTT 59.521 40.000 0.00 0.00 41.99 1.82
832 5687 5.014858 TCCGTCTAGGTGAGTAAGTCATTT 58.985 41.667 0.00 0.00 41.99 2.32
833 5688 4.597004 TCCGTCTAGGTGAGTAAGTCATT 58.403 43.478 0.00 0.00 41.99 2.57
834 5689 4.200874 CTCCGTCTAGGTGAGTAAGTCAT 58.799 47.826 0.00 0.00 41.99 3.06
835 5690 3.607741 CTCCGTCTAGGTGAGTAAGTCA 58.392 50.000 0.00 0.00 41.99 3.41
836 5691 2.944349 CCTCCGTCTAGGTGAGTAAGTC 59.056 54.545 0.00 0.00 41.99 3.01
837 5692 2.356947 CCCTCCGTCTAGGTGAGTAAGT 60.357 54.545 0.00 0.00 41.99 2.24
838 5693 2.092538 TCCCTCCGTCTAGGTGAGTAAG 60.093 54.545 0.00 0.00 41.99 2.34
839 5694 1.918262 TCCCTCCGTCTAGGTGAGTAA 59.082 52.381 0.00 0.00 41.99 2.24
840 5695 1.489649 CTCCCTCCGTCTAGGTGAGTA 59.510 57.143 0.00 0.00 41.99 2.59
841 5696 0.256464 CTCCCTCCGTCTAGGTGAGT 59.744 60.000 0.00 0.00 41.99 3.41
842 5697 0.256464 ACTCCCTCCGTCTAGGTGAG 59.744 60.000 0.00 0.00 41.99 3.51
843 5698 1.211457 GTACTCCCTCCGTCTAGGTGA 59.789 57.143 0.00 0.00 41.99 4.02
844 5699 1.212441 AGTACTCCCTCCGTCTAGGTG 59.788 57.143 0.00 0.00 41.99 4.00
845 5700 1.594129 AGTACTCCCTCCGTCTAGGT 58.406 55.000 0.00 0.00 41.99 3.08
846 5701 3.853355 TTAGTACTCCCTCCGTCTAGG 57.147 52.381 0.00 0.00 42.97 3.02
847 5702 4.023021 GCATTTAGTACTCCCTCCGTCTAG 60.023 50.000 0.00 0.00 0.00 2.43
848 5703 3.887716 GCATTTAGTACTCCCTCCGTCTA 59.112 47.826 0.00 0.00 0.00 2.59
849 5704 2.694109 GCATTTAGTACTCCCTCCGTCT 59.306 50.000 0.00 0.00 0.00 4.18
850 5705 2.223994 GGCATTTAGTACTCCCTCCGTC 60.224 54.545 0.00 0.00 0.00 4.79
851 5706 1.761198 GGCATTTAGTACTCCCTCCGT 59.239 52.381 0.00 0.00 0.00 4.69
852 5707 1.760613 TGGCATTTAGTACTCCCTCCG 59.239 52.381 0.00 0.00 0.00 4.63
853 5708 2.772515 AGTGGCATTTAGTACTCCCTCC 59.227 50.000 0.00 0.00 0.00 4.30
854 5709 3.451178 TCAGTGGCATTTAGTACTCCCTC 59.549 47.826 0.00 0.00 0.00 4.30
855 5710 3.450904 TCAGTGGCATTTAGTACTCCCT 58.549 45.455 0.00 0.00 0.00 4.20
856 5711 3.906720 TCAGTGGCATTTAGTACTCCC 57.093 47.619 0.00 0.00 0.00 4.30
857 5712 5.069781 AGAGATCAGTGGCATTTAGTACTCC 59.930 44.000 0.00 0.00 0.00 3.85
858 5713 6.155475 AGAGATCAGTGGCATTTAGTACTC 57.845 41.667 0.00 0.00 0.00 2.59
859 5714 6.382570 AGAAGAGATCAGTGGCATTTAGTACT 59.617 38.462 0.00 0.00 0.00 2.73
860 5715 6.578023 AGAAGAGATCAGTGGCATTTAGTAC 58.422 40.000 0.00 0.00 0.00 2.73
955 5819 6.366332 GCGTTTATATAGGACATGTCTGGAAG 59.634 42.308 24.50 7.91 0.00 3.46
1066 5965 5.010314 TGTTCGAAGTGAGCTAGGTAGAAAA 59.990 40.000 0.00 0.00 0.00 2.29
1068 5967 4.077108 TGTTCGAAGTGAGCTAGGTAGAA 58.923 43.478 0.00 0.00 0.00 2.10
1069 5968 3.682696 TGTTCGAAGTGAGCTAGGTAGA 58.317 45.455 0.00 0.00 0.00 2.59
1073 5972 4.499183 AGATTTGTTCGAAGTGAGCTAGG 58.501 43.478 0.00 0.00 0.00 3.02
1077 5976 3.120511 GGTGAGATTTGTTCGAAGTGAGC 60.121 47.826 0.00 0.00 0.00 4.26
1089 5988 1.091771 ATCGGCAGCGGTGAGATTTG 61.092 55.000 20.69 0.35 0.00 2.32
1090 5989 1.091771 CATCGGCAGCGGTGAGATTT 61.092 55.000 20.69 0.00 0.00 2.17
1091 5990 1.522355 CATCGGCAGCGGTGAGATT 60.522 57.895 20.69 4.55 0.00 2.40
1092 5991 2.107750 CATCGGCAGCGGTGAGAT 59.892 61.111 20.69 18.22 0.00 2.75
1093 5992 4.147449 CCATCGGCAGCGGTGAGA 62.147 66.667 20.69 16.71 0.00 3.27
1445 6344 2.915659 TGCACGTCCCCGAAGTCT 60.916 61.111 0.00 0.00 37.88 3.24
1675 6603 1.021390 AAACGCTGCCCGAAGATGAG 61.021 55.000 0.61 0.00 41.02 2.90
2575 7512 2.863401 TGTACGCTGCCTGTACATAG 57.137 50.000 14.01 0.00 45.24 2.23
2586 7524 2.340577 GCTTTGTAGTACGTGTACGCTG 59.659 50.000 4.67 0.98 44.43 5.18
2588 7526 2.318578 TGCTTTGTAGTACGTGTACGC 58.681 47.619 0.00 0.00 44.43 4.42
2589 7527 5.088068 TGTATGCTTTGTAGTACGTGTACG 58.912 41.667 0.00 2.43 46.33 3.67
2592 7530 4.796830 CGATGTATGCTTTGTAGTACGTGT 59.203 41.667 0.00 0.00 0.00 4.49
2593 7531 4.796830 ACGATGTATGCTTTGTAGTACGTG 59.203 41.667 0.00 0.00 0.00 4.49
2594 7532 4.990257 ACGATGTATGCTTTGTAGTACGT 58.010 39.130 0.00 0.00 0.00 3.57
2595 7533 5.032220 TGACGATGTATGCTTTGTAGTACG 58.968 41.667 0.00 0.00 0.00 3.67
2671 7643 8.788813 CGTAAATAATAAGCACAAGAGCAAAAG 58.211 33.333 0.00 0.00 36.85 2.27
2697 7669 2.603110 CACACCACGCACACAGATATAC 59.397 50.000 0.00 0.00 0.00 1.47
2698 7670 2.232696 ACACACCACGCACACAGATATA 59.767 45.455 0.00 0.00 0.00 0.86
2704 7676 0.175989 TTCTACACACCACGCACACA 59.824 50.000 0.00 0.00 0.00 3.72
2710 7682 1.876799 TGGCAATTTCTACACACCACG 59.123 47.619 0.00 0.00 0.00 4.94
2716 7688 4.568152 ACACTGTTGGCAATTTCTACAC 57.432 40.909 1.92 0.00 0.00 2.90
2800 7782 7.490657 TTCCTTACTAGCAGATCCAGTAAAA 57.509 36.000 0.00 0.84 35.08 1.52
2813 7798 4.120589 CCGACCTTTCATTCCTTACTAGC 58.879 47.826 0.00 0.00 0.00 3.42
2842 7827 3.430651 CCCGCCAAATTTGATATTGCAGT 60.431 43.478 19.86 0.00 0.00 4.40
2852 7837 1.134946 GATCCACTCCCGCCAAATTTG 59.865 52.381 11.40 11.40 0.00 2.32
2856 7841 0.608035 GTTGATCCACTCCCGCCAAA 60.608 55.000 0.00 0.00 0.00 3.28
2880 8164 6.402550 CGCATCATATCTAAATTGCACTACCC 60.403 42.308 0.00 0.00 0.00 3.69
2881 8165 6.402550 CCGCATCATATCTAAATTGCACTACC 60.403 42.308 0.00 0.00 0.00 3.18
2882 8166 6.147821 ACCGCATCATATCTAAATTGCACTAC 59.852 38.462 0.00 0.00 0.00 2.73
2887 8171 5.362556 ACACCGCATCATATCTAAATTGC 57.637 39.130 0.00 0.00 0.00 3.56
2899 8183 3.885724 TCTCAGATAAACACCGCATCA 57.114 42.857 0.00 0.00 0.00 3.07
2933 8266 0.249911 AGGAGTGGTTGTTGTCGCTC 60.250 55.000 0.00 0.00 39.15 5.03
2957 8290 1.815003 CCAAAAGGTGGTCTCATGCTC 59.185 52.381 0.00 0.00 43.20 4.26
2968 8301 4.339247 ACAGAGTTCAACATCCAAAAGGTG 59.661 41.667 0.00 0.00 0.00 4.00
2971 8304 6.382869 AGAACAGAGTTCAACATCCAAAAG 57.617 37.500 11.92 0.00 0.00 2.27
2972 8305 5.007626 CGAGAACAGAGTTCAACATCCAAAA 59.992 40.000 11.92 0.00 0.00 2.44
3016 8349 0.541998 AAAGTACCAAGCCCCAAGCC 60.542 55.000 0.00 0.00 45.47 4.35
3025 8358 7.883311 TCCTCTTTTTAGGATCAAAGTACCAAG 59.117 37.037 0.00 0.00 40.86 3.61
3046 8379 1.204941 GTGTCAACTATGCCGTCCTCT 59.795 52.381 0.00 0.00 0.00 3.69
3047 8380 1.204941 AGTGTCAACTATGCCGTCCTC 59.795 52.381 0.00 0.00 33.79 3.71
3049 8382 1.204941 AGAGTGTCAACTATGCCGTCC 59.795 52.381 0.00 0.00 36.52 4.79
3054 8387 6.159988 AGTGAAAGTAGAGTGTCAACTATGC 58.840 40.000 0.00 0.00 36.52 3.14
3058 8391 6.159988 GCATAGTGAAAGTAGAGTGTCAACT 58.840 40.000 0.00 0.00 40.21 3.16
3067 8400 5.773176 TGGATATCCGCATAGTGAAAGTAGA 59.227 40.000 17.04 0.00 39.43 2.59
3068 8401 5.864474 GTGGATATCCGCATAGTGAAAGTAG 59.136 44.000 27.05 0.00 45.55 2.57
3082 8415 0.852777 CGACAAAGCGTGGATATCCG 59.147 55.000 17.04 7.11 39.43 4.18
3093 8426 2.796245 AATTTCCGGCGCGACAAAGC 62.796 55.000 14.85 0.00 0.00 3.51
3106 8439 6.703165 ACTGAGAAATCTTTGCAACAATTTCC 59.297 34.615 26.77 21.48 38.36 3.13
3107 8440 7.704789 ACTGAGAAATCTTTGCAACAATTTC 57.295 32.000 24.87 24.87 38.04 2.17
3118 8451 9.846248 GTTTGCATATGTAACTGAGAAATCTTT 57.154 29.630 5.66 0.00 0.00 2.52
3124 8457 7.620880 AGGTAGTTTGCATATGTAACTGAGAA 58.379 34.615 23.94 10.24 34.26 2.87
3126 8459 8.942338 TTAGGTAGTTTGCATATGTAACTGAG 57.058 34.615 23.94 0.00 34.26 3.35
3140 8473 8.070171 GCATGCATTAGTGTATTAGGTAGTTTG 58.930 37.037 14.21 0.00 0.00 2.93
3141 8474 7.228706 GGCATGCATTAGTGTATTAGGTAGTTT 59.771 37.037 21.36 0.00 0.00 2.66
3145 8478 6.181206 TGGCATGCATTAGTGTATTAGGTA 57.819 37.500 21.36 0.00 0.00 3.08
3147 8480 5.474532 ACATGGCATGCATTAGTGTATTAGG 59.525 40.000 26.70 0.00 0.00 2.69
3261 8656 1.952133 GTGCGTGCGTGTGTTAGGA 60.952 57.895 0.00 0.00 0.00 2.94
3287 8682 1.005630 CTCAGCGCCTATGTAGCCC 60.006 63.158 2.29 0.00 0.00 5.19
3309 8704 1.065854 AGTGCTAGGAGTGATGTTGCC 60.066 52.381 0.00 0.00 0.00 4.52
3316 8711 0.323087 TGCGGTAGTGCTAGGAGTGA 60.323 55.000 1.14 0.00 35.36 3.41
3335 8730 7.316640 GTCATATGTAGCTTCATATCTTCGGT 58.683 38.462 19.62 0.00 38.47 4.69
3377 8772 4.767255 CTTCCTGAAGGCGCCGCT 62.767 66.667 23.20 13.07 34.87 5.52
3594 8990 1.064463 GGTCATCATGGTCATGTGGGT 60.064 52.381 10.32 0.00 39.72 4.51
3654 11008 2.600731 CCTGGTGGTGGTGGTTGT 59.399 61.111 0.00 0.00 0.00 3.32
3698 11498 2.067605 TCACGGGTGAGGTGGTGTT 61.068 57.895 0.00 0.00 36.09 3.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.