AutoCloner

Multiple sequence alignment - TraesCS7B01G306700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G306700	chr7B	100.000	2381	0	0	1	2381	550029634	550032014	0.000000e+00	4397.0
1	TraesCS7B01G306700	chr7B	88.160	777	68	10	2	758	113145289	113144517	0.000000e+00	904.0
2	TraesCS7B01G306700	chr7B	87.072	789	79	11	2	771	26282453	26283237	0.000000e+00	870.0
3	TraesCS7B01G306700	chr7D	93.757	849	29	10	804	1639	517218699	517219536	0.000000e+00	1253.0
4	TraesCS7B01G306700	chr7D	88.745	773	65	8	8	771	436475330	436476089	0.000000e+00	926.0
5	TraesCS7B01G306700	chr7D	86.929	788	81	9	2	771	503935730	503936513	0.000000e+00	865.0
6	TraesCS7B01G306700	chr7D	91.485	505	31	6	1888	2381	517219859	517220362	0.000000e+00	684.0
7	TraesCS7B01G306700	chr7D	92.063	63	5	0	1634	1696	517219587	517219649	3.260000e-14	89.8
8	TraesCS7B01G306700	chr7A	92.399	842	31	8	808	1639	592045998	592046816	0.000000e+00	1170.0
9	TraesCS7B01G306700	chr7A	89.474	684	37	13	1708	2381	592046998	592047656	0.000000e+00	832.0
10	TraesCS7B01G306700	chr7A	95.238	63	3	0	1634	1696	592046865	592046927	1.510000e-17	100.0
11	TraesCS7B01G306700	chr3D	88.677	786	71	10	2	771	63396533	63395750	0.000000e+00	942.0
12	TraesCS7B01G306700	chr3D	89.748	595	52	7	2	589	568084052	568084644	0.000000e+00	752.0
13	TraesCS7B01G306700	chr3D	82.385	545	66	12	946	1470	120529692	120530226	4.670000e-122	448.0
14	TraesCS7B01G306700	chr1D	86.973	783	82	11	4	771	216402913	216403690	0.000000e+00	863.0
15	TraesCS7B01G306700	chr1D	84.761	794	98	12	2	785	18763933	18764713	0.000000e+00	774.0
16	TraesCS7B01G306700	chr2D	86.641	786	82	13	2	771	6300628	6301406	0.000000e+00	848.0
17	TraesCS7B01G306700	chr2D	82.283	762	98	13	2	757	618097117	618096387	2.010000e-175	625.0
18	TraesCS7B01G306700	chrUn	85.494	779	82	15	2	755	87808780	87809552	0.000000e+00	784.0
19	TraesCS7B01G306700	chr2B	84.795	684	95	4	3	685	602098741	602098066	0.000000e+00	678.0
20	TraesCS7B01G306700	chr3B	84.328	670	84	12	93	758	229508085	229507433	9.280000e-179	636.0
21	TraesCS7B01G306700	chr3B	82.296	514	66	11	1001	1492	172958849	172958339	2.830000e-114	422.0
22	TraesCS7B01G306700	chr1B	85.065	616	86	6	145	757	678673086	678673698	7.230000e-175	623.0
23	TraesCS7B01G306700	chr5D	81.462	766	118	17	2	758	15429342	15428592	7.280000e-170	606.0
24	TraesCS7B01G306700	chr4D	79.060	745	141	14	2	738	383823623	383822886	4.570000e-137	497.0
25	TraesCS7B01G306700	chr5B	87.500	416	50	2	273	687	320399131	320398717	1.660000e-131	479.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G306700	chr7B	550029634	550032014	2380	False	4397.000000	4397	100.000000	1	2381	1	chr7B.!!$F2	2380
1	TraesCS7B01G306700	chr7B	113144517	113145289	772	True	904.000000	904	88.160000	2	758	1	chr7B.!!$R1	756
2	TraesCS7B01G306700	chr7B	26282453	26283237	784	False	870.000000	870	87.072000	2	771	1	chr7B.!!$F1	769
3	TraesCS7B01G306700	chr7D	436475330	436476089	759	False	926.000000	926	88.745000	8	771	1	chr7D.!!$F1	763
4	TraesCS7B01G306700	chr7D	503935730	503936513	783	False	865.000000	865	86.929000	2	771	1	chr7D.!!$F2	769
5	TraesCS7B01G306700	chr7D	517218699	517220362	1663	False	675.600000	1253	92.435000	804	2381	3	chr7D.!!$F3	1577
6	TraesCS7B01G306700	chr7A	592045998	592047656	1658	False	700.666667	1170	92.370333	808	2381	3	chr7A.!!$F1	1573
7	TraesCS7B01G306700	chr3D	63395750	63396533	783	True	942.000000	942	88.677000	2	771	1	chr3D.!!$R1	769
8	TraesCS7B01G306700	chr3D	568084052	568084644	592	False	752.000000	752	89.748000	2	589	1	chr3D.!!$F2	587
9	TraesCS7B01G306700	chr3D	120529692	120530226	534	False	448.000000	448	82.385000	946	1470	1	chr3D.!!$F1	524
10	TraesCS7B01G306700	chr1D	216402913	216403690	777	False	863.000000	863	86.973000	4	771	1	chr1D.!!$F2	767
11	TraesCS7B01G306700	chr1D	18763933	18764713	780	False	774.000000	774	84.761000	2	785	1	chr1D.!!$F1	783
12	TraesCS7B01G306700	chr2D	6300628	6301406	778	False	848.000000	848	86.641000	2	771	1	chr2D.!!$F1	769
13	TraesCS7B01G306700	chr2D	618096387	618097117	730	True	625.000000	625	82.283000	2	757	1	chr2D.!!$R1	755
14	TraesCS7B01G306700	chrUn	87808780	87809552	772	False	784.000000	784	85.494000	2	755	1	chrUn.!!$F1	753
15	TraesCS7B01G306700	chr2B	602098066	602098741	675	True	678.000000	678	84.795000	3	685	1	chr2B.!!$R1	682
16	TraesCS7B01G306700	chr3B	229507433	229508085	652	True	636.000000	636	84.328000	93	758	1	chr3B.!!$R2	665
17	TraesCS7B01G306700	chr3B	172958339	172958849	510	True	422.000000	422	82.296000	1001	1492	1	chr3B.!!$R1	491
18	TraesCS7B01G306700	chr1B	678673086	678673698	612	False	623.000000	623	85.065000	145	757	1	chr1B.!!$F1	612
19	TraesCS7B01G306700	chr5D	15428592	15429342	750	True	606.000000	606	81.462000	2	758	1	chr5D.!!$R1	756
20	TraesCS7B01G306700	chr4D	383822886	383823623	737	True	497.000000	497	79.060000	2	738	1	chr4D.!!$R1	736

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
631	667	0.391661	TGGCGAGAAATGTGAGGAGC	60.392	55.0	0.0	0.0	0.0	4.7	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
1470	1559	0.104855	TCCTCGCGGAAATCTGATGG	59.895	55.0	6.13	0.0	36.03	3.51	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
128	130	2.573920	AGGTCTTCGAGCTCCTCAC	58.426	57.895	8.47	0.00	35.30	3.51
178	194	2.360600	CCCCGTTCGGAAATGGCA	60.361	61.111	13.08	0.00	39.83	4.92
205	221	0.948623	CCACGTCGAAATCTGCCACA	60.949	55.000	0.00	0.00	0.00	4.17
346	363	0.610687	CCGGAAGAGGAAGAGCTTGT	59.389	55.000	0.00	0.00	0.00	3.16
451	469	3.302347	AACGAGGAAGCTCAGCGGG	62.302	63.158	0.00	0.00	0.00	6.13
631	667	0.391661	TGGCGAGAAATGTGAGGAGC	60.392	55.000	0.00	0.00	0.00	4.70
699	736	2.623915	CCCGTATCTACCCCGCGAG	61.624	68.421	8.23	0.00	0.00	5.03
773	828	1.286260	GGCAGAGCCCGTATACTCG	59.714	63.158	0.56	0.00	44.06	4.18
774	829	1.371881	GCAGAGCCCGTATACTCGC	60.372	63.158	0.56	2.25	37.99	5.03
781	836	1.167851	CCCGTATACTCGCCGGAATA	58.832	55.000	5.05	0.00	44.41	1.75
784	839	3.367703	CCCGTATACTCGCCGGAATATTT	60.368	47.826	5.05	0.00	44.41	1.40
785	840	4.240096	CCGTATACTCGCCGGAATATTTT	58.760	43.478	5.05	0.00	44.41	1.82
786	841	5.401550	CCGTATACTCGCCGGAATATTTTA	58.598	41.667	5.05	0.00	44.41	1.52
787	842	5.514204	CCGTATACTCGCCGGAATATTTTAG	59.486	44.000	5.05	0.00	44.41	1.85
788	843	5.514204	CGTATACTCGCCGGAATATTTTAGG	59.486	44.000	5.05	0.00	0.00	2.69
789	844	3.121738	ACTCGCCGGAATATTTTAGGG	57.878	47.619	5.05	0.00	0.00	3.53
790	845	2.224450	ACTCGCCGGAATATTTTAGGGG	60.224	50.000	5.05	12.49	36.42	4.79
791	846	1.072648	TCGCCGGAATATTTTAGGGGG	59.927	52.381	5.05	11.31	35.87	5.40
1216	1289	4.758251	CGATGCAGTCGCCCACCA	62.758	66.667	5.77	0.00	44.33	4.17
1470	1559	5.445964	TGCTTATTTAGGACAGGGGAATTC	58.554	41.667	0.00	0.00	0.00	2.17
1520	1614	1.139654	AGTTCTTGCAGTGCACTCAGA	59.860	47.619	19.58	15.66	38.71	3.27
1615	1711	3.685139	TGATGACTGAAGAGGGTGTTC	57.315	47.619	0.00	0.00	0.00	3.18
1673	1828	7.287696	ACTTTTCCTTTGTATGAAGAACACCAT	59.712	33.333	0.00	0.00	0.00	3.55
1689	1844	1.153168	CATTAGACCACCCGGCCAG	60.153	63.158	2.24	0.00	34.57	4.85
1735	1957	7.827729	AGTCTTGTTCTGGTTGTAACTTTACTT	59.172	33.333	1.04	0.00	34.77	2.24
1765	1987	3.494626	TCAGTTTCGATGTGTTCTTGCTC	59.505	43.478	0.00	0.00	0.00	4.26
1795	2017	8.840833	TGTAAAATGCACTGTTAAGAGTATCA	57.159	30.769	4.74	7.09	37.82	2.15
1796	2018	8.935844	TGTAAAATGCACTGTTAAGAGTATCAG	58.064	33.333	4.74	0.00	37.82	2.90
1849	2072	1.353022	AGGTGGTGGAATTAAGCCGAA	59.647	47.619	0.00	0.00	0.00	4.30
1850	2073	1.743394	GGTGGTGGAATTAAGCCGAAG	59.257	52.381	0.00	0.00	0.00	3.79
1851	2074	1.132453	GTGGTGGAATTAAGCCGAAGC	59.868	52.381	0.00	0.00	40.32	3.86
1852	2075	0.738975	GGTGGAATTAAGCCGAAGCC	59.261	55.000	0.00	0.00	41.25	4.35
1853	2076	0.377203	GTGGAATTAAGCCGAAGCCG	59.623	55.000	0.00	0.00	41.25	5.52
1854	2077	0.250793	TGGAATTAAGCCGAAGCCGA	59.749	50.000	0.00	0.00	41.25	5.54
1855	2078	0.938008	GGAATTAAGCCGAAGCCGAG	59.062	55.000	0.00	0.00	41.25	4.63
1856	2079	0.938008	GAATTAAGCCGAAGCCGAGG	59.062	55.000	0.00	0.00	41.25	4.63
1857	2080	0.252197	AATTAAGCCGAAGCCGAGGT	59.748	50.000	0.00	0.00	41.25	3.85
1858	2081	0.462047	ATTAAGCCGAAGCCGAGGTG	60.462	55.000	0.00	0.00	41.25	4.00
1859	2082	1.823169	TTAAGCCGAAGCCGAGGTGT	61.823	55.000	0.00	0.00	41.25	4.16
1860	2083	2.501223	TAAGCCGAAGCCGAGGTGTG	62.501	60.000	0.00	0.00	41.25	3.82
1861	2084	4.373116	GCCGAAGCCGAGGTGTGA	62.373	66.667	0.00	0.00	38.22	3.58
1862	2085	2.432628	CCGAAGCCGAGGTGTGAC	60.433	66.667	0.00	0.00	38.22	3.67
1863	2086	2.651361	CGAAGCCGAGGTGTGACT	59.349	61.111	0.00	0.00	38.22	3.41
1864	2087	1.006102	CGAAGCCGAGGTGTGACTT	60.006	57.895	0.00	0.00	38.22	3.01
1865	2088	0.600255	CGAAGCCGAGGTGTGACTTT	60.600	55.000	0.00	0.00	38.22	2.66
1866	2089	1.594331	GAAGCCGAGGTGTGACTTTT	58.406	50.000	0.00	0.00	0.00	2.27
1874	2097	3.430218	CGAGGTGTGACTTTTCTTGCTAG	59.570	47.826	0.00	0.00	0.00	3.42
1877	2100	3.184581	GGTGTGACTTTTCTTGCTAGACG	59.815	47.826	0.00	0.00	0.00	4.18
1882	2105	3.654414	ACTTTTCTTGCTAGACGGTGAG	58.346	45.455	0.00	0.00	0.00	3.51
1893	2116	2.357517	CGGTGAGACTGTGTGCCC	60.358	66.667	0.00	0.00	0.00	5.36
1901	2124	4.007644	CTGTGTGCCCTGCCGAGA	62.008	66.667	0.00	0.00	0.00	4.04
1903	2126	4.008933	GTGTGCCCTGCCGAGAGT	62.009	66.667	0.00	0.00	0.00	3.24
1920	2150	7.933577	TGCCGAGAGTAATGAATGAAATATCTT	59.066	33.333	0.00	0.00	0.00	2.40
2069	2307	0.537188	CTCACCGACTACCAGCCATT	59.463	55.000	0.00	0.00	0.00	3.16
2161	2399	1.391157	ATGCTCAGTCGCCTCTCTCC	61.391	60.000	0.00	0.00	0.00	3.71
2183	2421	2.047465	CTGCTCTCGCTTGCCAGT	60.047	61.111	0.00	0.00	36.97	4.00
2204	2442	2.633967	TGCAGATTCCTGGCACAAAAAT	59.366	40.909	0.00	0.00	40.72	1.82
2247	2488	4.557276	ATTGAAGTAGCGTCGTAAAACG	57.443	40.909	0.00	0.00	45.31	3.60
2284	2525	0.260523	AGCTCCCTCTCCCTGACTAC	59.739	60.000	0.00	0.00	0.00	2.73
2291	2532	2.183679	CTCTCCCTGACTACCTTTGCT	58.816	52.381	0.00	0.00	0.00	3.91
2313	2555	2.360350	CTCCGTGCAGGCAATGGT	60.360	61.111	12.00	0.00	40.77	3.55

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
68	70	3.737172	CAACCTTGCCGCGAAGGG	61.737	66.667	25.25	17.25	46.11	3.95
156	160	1.677633	ATTTCCGAACGGGGCTTGG	60.678	57.895	13.29	0.00	36.01	3.61
162	166	1.211709	GTTGCCATTTCCGAACGGG	59.788	57.895	13.29	0.00	35.59	5.28
171	175	2.596046	TGGTCGCGGTTGCCATTT	60.596	55.556	6.13	0.00	38.08	2.32
199	215	0.316841	GCCCGAAGATTTTTGTGGCA	59.683	50.000	9.51	0.00	35.63	4.92
346	363	2.268920	GCAGATCTTCCCACGCCA	59.731	61.111	0.00	0.00	0.00	5.69
451	469	1.448717	GAACAAGGGCCTCGAGCTC	60.449	63.158	6.46	2.73	45.27	4.09
631	667	2.824041	CCGCAATTCCCCACTCCG	60.824	66.667	0.00	0.00	0.00	4.63
668	705	5.163673	GGTAGATACGGGTCGAAATCCTATC	60.164	48.000	0.00	0.48	0.00	2.08
674	711	1.966354	GGGGTAGATACGGGTCGAAAT	59.034	52.381	0.00	0.00	0.00	2.17
699	736	2.415625	CCGAAGCAGTATATCTACGGGC	60.416	54.545	0.00	1.45	36.27	6.13
758	811	2.259439	CGGCGAGTATACGGGCTCT	61.259	63.158	17.03	0.00	0.00	4.09
789	844	3.879180	AACGGCAATGTCCCACCCC	62.879	63.158	0.00	0.00	0.00	4.95
790	845	2.282887	AACGGCAATGTCCCACCC	60.283	61.111	0.00	0.00	0.00	4.61
791	846	0.893727	AAGAACGGCAATGTCCCACC	60.894	55.000	0.00	0.00	0.00	4.61
792	847	0.521735	GAAGAACGGCAATGTCCCAC	59.478	55.000	0.00	0.00	0.00	4.61
793	848	0.608035	GGAAGAACGGCAATGTCCCA	60.608	55.000	0.00	0.00	0.00	4.37
794	849	0.322546	AGGAAGAACGGCAATGTCCC	60.323	55.000	0.00	0.00	0.00	4.46
795	850	1.534729	AAGGAAGAACGGCAATGTCC	58.465	50.000	0.00	0.00	0.00	4.02
796	851	3.643159	AAAAGGAAGAACGGCAATGTC	57.357	42.857	0.00	0.00	0.00	3.06
818	873	2.037121	TCAAGCTCACTGTCGGATGAAA	59.963	45.455	0.00	0.00	0.00	2.69
819	874	1.618343	TCAAGCTCACTGTCGGATGAA	59.382	47.619	0.00	0.00	0.00	2.57
820	875	1.256812	TCAAGCTCACTGTCGGATGA	58.743	50.000	0.00	0.00	0.00	2.92
848	903	0.746063	TGGCACCAGACAAAGCTTTG	59.254	50.000	32.53	32.53	43.62	2.77
944	1004	2.421424	GGCTAAGCAGATGGTGAAACTG	59.579	50.000	0.00	0.00	36.74	3.16
1205	1278	3.560251	AAGCAGTGGTGGGCGACT	61.560	61.111	0.00	0.00	33.87	4.18
1216	1289	3.289834	CCCGCAGTTGCAAGCAGT	61.290	61.111	0.00	0.00	42.21	4.40
1470	1559	0.104855	TCCTCGCGGAAATCTGATGG	59.895	55.000	6.13	0.00	36.03	3.51
1482	1571	7.502339	CAAGAACTTACAATATAATCCTCGCG	58.498	38.462	0.00	0.00	0.00	5.87
1673	1828	3.006728	CCTGGCCGGGTGGTCTAA	61.007	66.667	23.90	0.00	41.88	2.10
1699	1854	4.719369	ACAAGACTCCGCCGCGAC	62.719	66.667	15.93	0.00	0.00	5.19
1700	1855	3.909258	GAACAAGACTCCGCCGCGA	62.909	63.158	15.93	0.00	0.00	5.87
1702	1857	2.048127	AGAACAAGACTCCGCCGC	60.048	61.111	0.00	0.00	0.00	6.53
1706	1861	2.240493	ACAACCAGAACAAGACTCCG	57.760	50.000	0.00	0.00	0.00	4.63
1709	1923	7.336396	AGTAAAGTTACAACCAGAACAAGACT	58.664	34.615	4.14	0.00	36.12	3.24
1748	1970	1.800586	GCAGAGCAAGAACACATCGAA	59.199	47.619	0.00	0.00	0.00	3.71
1765	1987	3.648339	AACAGTGCATTTTACAGGCAG	57.352	42.857	0.00	0.00	38.38	4.85
1795	2017	9.247861	AGCCTTAACATGAATTCAATCTTTACT	57.752	29.630	13.09	1.89	0.00	2.24
1796	2018	9.860898	AAGCCTTAACATGAATTCAATCTTTAC	57.139	29.630	13.09	0.00	0.00	2.01
1798	2020	7.756722	CGAAGCCTTAACATGAATTCAATCTTT	59.243	33.333	13.09	5.92	0.00	2.52
1849	2072	0.759346	AGAAAAGTCACACCTCGGCT	59.241	50.000	0.00	0.00	0.00	5.52
1850	2073	1.264288	CAAGAAAAGTCACACCTCGGC	59.736	52.381	0.00	0.00	0.00	5.54
1851	2074	1.264288	GCAAGAAAAGTCACACCTCGG	59.736	52.381	0.00	0.00	0.00	4.63
1852	2075	2.213499	AGCAAGAAAAGTCACACCTCG	58.787	47.619	0.00	0.00	0.00	4.63
1853	2076	4.449405	GTCTAGCAAGAAAAGTCACACCTC	59.551	45.833	0.00	0.00	32.16	3.85
1854	2077	4.381411	GTCTAGCAAGAAAAGTCACACCT	58.619	43.478	0.00	0.00	32.16	4.00
1855	2078	3.184581	CGTCTAGCAAGAAAAGTCACACC	59.815	47.826	0.00	0.00	32.16	4.16
1856	2079	3.184581	CCGTCTAGCAAGAAAAGTCACAC	59.815	47.826	0.00	0.00	32.16	3.82
1857	2080	3.181469	ACCGTCTAGCAAGAAAAGTCACA	60.181	43.478	0.00	0.00	32.16	3.58
1858	2081	3.184581	CACCGTCTAGCAAGAAAAGTCAC	59.815	47.826	0.00	0.00	32.16	3.67
1859	2082	3.069016	TCACCGTCTAGCAAGAAAAGTCA	59.931	43.478	0.00	0.00	32.16	3.41
1860	2083	3.650139	TCACCGTCTAGCAAGAAAAGTC	58.350	45.455	0.00	0.00	32.16	3.01
1861	2084	3.321111	TCTCACCGTCTAGCAAGAAAAGT	59.679	43.478	0.00	0.00	32.16	2.66
1862	2085	3.675698	GTCTCACCGTCTAGCAAGAAAAG	59.324	47.826	0.00	0.00	32.16	2.27
1863	2086	3.321111	AGTCTCACCGTCTAGCAAGAAAA	59.679	43.478	0.00	0.00	32.16	2.29
1864	2087	2.891580	AGTCTCACCGTCTAGCAAGAAA	59.108	45.455	0.00	0.00	32.16	2.52
1865	2088	2.229062	CAGTCTCACCGTCTAGCAAGAA	59.771	50.000	0.00	0.00	32.16	2.52
1866	2089	1.813178	CAGTCTCACCGTCTAGCAAGA	59.187	52.381	0.00	0.00	0.00	3.02
1874	2097	1.664965	GGCACACAGTCTCACCGTC	60.665	63.158	0.00	0.00	0.00	4.79
1877	2100	1.302033	CAGGGCACACAGTCTCACC	60.302	63.158	0.00	0.00	0.00	4.02
1882	2105	4.314440	TCGGCAGGGCACACAGTC	62.314	66.667	0.00	0.00	0.00	3.51
1893	2116	5.998454	ATTTCATTCATTACTCTCGGCAG	57.002	39.130	0.00	0.00	0.00	4.85
1935	2165	1.900498	GTTCAAGCAGTGCCTGGCT	60.900	57.895	21.03	0.00	43.46	4.75
2069	2307	0.693430	AGGAGCTGAGCCATGGATGA	60.693	55.000	18.40	0.92	0.00	2.92
2183	2421	1.702182	TTTTGTGCCAGGAATCTGCA	58.298	45.000	0.00	0.00	39.61	4.41
2204	2442	1.205179	TCCTGCACGCGGATAAAAGTA	59.795	47.619	12.47	0.00	0.00	2.24
2247	2488	1.079127	TAGCTCAAGAAGGCACGGC	60.079	57.895	0.00	0.00	0.00	5.68
2284	2525	1.301677	GCACGGAGAGGAAGCAAAGG	61.302	60.000	0.00	0.00	0.00	3.11
2291	2532	1.841302	ATTGCCTGCACGGAGAGGAA	61.841	55.000	6.40	0.00	33.16	3.36

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.