Multiple sequence alignment - TraesCS7B01G306600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G306600 chr7B 100.000 2582 0 0 1 2582 549934827 549932246 0.000000e+00 4769.0
1 TraesCS7B01G306600 chr7B 90.259 2166 185 14 421 2576 619668177 619670326 0.000000e+00 2808.0
2 TraesCS7B01G306600 chr7D 94.649 2168 102 9 417 2576 126988440 126990601 0.000000e+00 3349.0
3 TraesCS7B01G306600 chr7D 91.601 2167 155 20 417 2576 207197765 207199911 0.000000e+00 2968.0
4 TraesCS7B01G306600 chr7D 95.327 214 5 2 1 214 194468756 194468964 4.120000e-88 335.0
5 TraesCS7B01G306600 chr1B 93.398 2166 133 4 420 2576 570458681 570456517 0.000000e+00 3199.0
6 TraesCS7B01G306600 chr1B 91.216 2163 161 19 421 2576 643042374 643040234 0.000000e+00 2915.0
7 TraesCS7B01G306600 chr6D 93.232 2172 125 7 420 2576 430885509 430883345 0.000000e+00 3177.0
8 TraesCS7B01G306600 chr6D 91.721 2162 159 13 421 2576 944567 942420 0.000000e+00 2983.0
9 TraesCS7B01G306600 chr1A 91.367 2166 166 14 421 2576 510460015 510457861 0.000000e+00 2944.0
10 TraesCS7B01G306600 chr2B 91.597 2142 159 16 420 2550 206292620 206294751 0.000000e+00 2939.0
11 TraesCS7B01G306600 chr2B 94.309 369 19 1 1 369 355391168 355390802 4.820000e-157 564.0
12 TraesCS7B01G306600 chr1D 77.703 296 53 4 31 324 122552379 122552095 4.420000e-38 169.0
13 TraesCS7B01G306600 chr7A 95.349 43 1 1 373 415 591881355 591881314 1.660000e-07 67.6
14 TraesCS7B01G306600 chr5D 92.683 41 3 0 328 368 8763641 8763681 2.770000e-05 60.2
15 TraesCS7B01G306600 chr4D 94.737 38 2 0 330 367 10846134 10846171 2.770000e-05 60.2
16 TraesCS7B01G306600 chr3D 97.059 34 1 0 337 370 83598783 83598750 9.980000e-05 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G306600 chr7B 549932246 549934827 2581 True 4769 4769 100.000 1 2582 1 chr7B.!!$R1 2581
1 TraesCS7B01G306600 chr7B 619668177 619670326 2149 False 2808 2808 90.259 421 2576 1 chr7B.!!$F1 2155
2 TraesCS7B01G306600 chr7D 126988440 126990601 2161 False 3349 3349 94.649 417 2576 1 chr7D.!!$F1 2159
3 TraesCS7B01G306600 chr7D 207197765 207199911 2146 False 2968 2968 91.601 417 2576 1 chr7D.!!$F3 2159
4 TraesCS7B01G306600 chr1B 570456517 570458681 2164 True 3199 3199 93.398 420 2576 1 chr1B.!!$R1 2156
5 TraesCS7B01G306600 chr1B 643040234 643042374 2140 True 2915 2915 91.216 421 2576 1 chr1B.!!$R2 2155
6 TraesCS7B01G306600 chr6D 430883345 430885509 2164 True 3177 3177 93.232 420 2576 1 chr6D.!!$R2 2156
7 TraesCS7B01G306600 chr6D 942420 944567 2147 True 2983 2983 91.721 421 2576 1 chr6D.!!$R1 2155
8 TraesCS7B01G306600 chr1A 510457861 510460015 2154 True 2944 2944 91.367 421 2576 1 chr1A.!!$R1 2155
9 TraesCS7B01G306600 chr2B 206292620 206294751 2131 False 2939 2939 91.597 420 2550 1 chr2B.!!$F1 2130

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
340 341 0.025001 CGTTATTGTGAAGAGCGGCG 59.975 55.0 0.51 0.51 0.0 6.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1622 1647 0.478072 AACCCTGGCAGTGACATGAA 59.522 50.0 14.43 0.0 0.0 2.57 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.452078 GTGTTTTGAATTGGAGTGATCCA 57.548 39.130 0.00 0.00 38.14 3.41
23 24 6.029346 GTGTTTTGAATTGGAGTGATCCAT 57.971 37.500 0.00 0.00 39.86 3.41
24 25 7.156876 GTGTTTTGAATTGGAGTGATCCATA 57.843 36.000 0.00 0.00 39.86 2.74
25 26 7.029563 GTGTTTTGAATTGGAGTGATCCATAC 58.970 38.462 0.00 0.00 39.86 2.39
26 27 6.128035 TGTTTTGAATTGGAGTGATCCATACG 60.128 38.462 0.00 0.00 39.86 3.06
27 28 4.753516 TGAATTGGAGTGATCCATACGT 57.246 40.909 0.00 0.00 39.86 3.57
28 29 4.693283 TGAATTGGAGTGATCCATACGTC 58.307 43.478 0.00 0.00 39.86 4.34
29 30 4.161377 TGAATTGGAGTGATCCATACGTCA 59.839 41.667 0.00 0.00 39.86 4.35
30 31 4.753516 ATTGGAGTGATCCATACGTCAA 57.246 40.909 0.00 0.00 39.86 3.18
31 32 3.520290 TGGAGTGATCCATACGTCAAC 57.480 47.619 0.00 0.00 34.33 3.18
32 33 2.829120 TGGAGTGATCCATACGTCAACA 59.171 45.455 0.00 0.00 34.33 3.33
33 34 3.259625 TGGAGTGATCCATACGTCAACAA 59.740 43.478 0.00 0.00 34.33 2.83
34 35 3.617263 GGAGTGATCCATACGTCAACAAC 59.383 47.826 0.00 0.00 0.00 3.32
35 36 4.242475 GAGTGATCCATACGTCAACAACA 58.758 43.478 0.00 0.00 0.00 3.33
36 37 4.245660 AGTGATCCATACGTCAACAACAG 58.754 43.478 0.00 0.00 0.00 3.16
37 38 3.994392 GTGATCCATACGTCAACAACAGT 59.006 43.478 0.00 0.00 0.00 3.55
38 39 4.091509 GTGATCCATACGTCAACAACAGTC 59.908 45.833 0.00 0.00 0.00 3.51
39 40 2.668250 TCCATACGTCAACAACAGTCG 58.332 47.619 0.00 0.00 0.00 4.18
40 41 2.293955 TCCATACGTCAACAACAGTCGA 59.706 45.455 0.00 0.00 0.00 4.20
41 42 2.661675 CCATACGTCAACAACAGTCGAG 59.338 50.000 0.00 0.00 0.00 4.04
42 43 2.410785 TACGTCAACAACAGTCGAGG 57.589 50.000 0.00 0.00 0.00 4.63
43 44 0.742505 ACGTCAACAACAGTCGAGGA 59.257 50.000 0.00 0.00 0.00 3.71
44 45 1.340248 ACGTCAACAACAGTCGAGGAT 59.660 47.619 0.00 0.00 0.00 3.24
45 46 1.986378 CGTCAACAACAGTCGAGGATC 59.014 52.381 0.00 0.00 0.00 3.36
46 47 2.351835 CGTCAACAACAGTCGAGGATCT 60.352 50.000 0.00 0.00 0.00 2.75
47 48 3.246619 GTCAACAACAGTCGAGGATCTC 58.753 50.000 0.00 0.00 0.00 2.75
57 58 3.904586 GAGGATCTCGAAGATGGGC 57.095 57.895 2.65 0.00 34.53 5.36
58 59 1.043816 GAGGATCTCGAAGATGGGCA 58.956 55.000 2.65 0.00 34.53 5.36
59 60 1.622811 GAGGATCTCGAAGATGGGCAT 59.377 52.381 2.65 0.00 34.53 4.40
60 61 1.347050 AGGATCTCGAAGATGGGCATG 59.653 52.381 2.65 0.00 34.53 4.06
61 62 1.345741 GGATCTCGAAGATGGGCATGA 59.654 52.381 0.00 0.00 34.53 3.07
62 63 2.224378 GGATCTCGAAGATGGGCATGAA 60.224 50.000 0.00 0.00 34.53 2.57
63 64 2.315925 TCTCGAAGATGGGCATGAAC 57.684 50.000 0.00 0.00 33.89 3.18
64 65 1.554617 TCTCGAAGATGGGCATGAACA 59.445 47.619 0.00 0.00 33.89 3.18
65 66 2.027285 TCTCGAAGATGGGCATGAACAA 60.027 45.455 0.00 0.00 33.89 2.83
66 67 2.083774 TCGAAGATGGGCATGAACAAC 58.916 47.619 0.00 0.00 0.00 3.32
67 68 1.133025 CGAAGATGGGCATGAACAACC 59.867 52.381 0.00 0.00 0.00 3.77
68 69 2.450476 GAAGATGGGCATGAACAACCT 58.550 47.619 0.00 0.00 0.00 3.50
69 70 3.620488 GAAGATGGGCATGAACAACCTA 58.380 45.455 0.00 0.00 0.00 3.08
70 71 3.004752 AGATGGGCATGAACAACCTAC 57.995 47.619 0.00 0.00 0.00 3.18
71 72 2.024414 GATGGGCATGAACAACCTACC 58.976 52.381 0.00 0.00 0.00 3.18
72 73 0.774276 TGGGCATGAACAACCTACCA 59.226 50.000 0.00 0.00 0.00 3.25
73 74 1.173913 GGGCATGAACAACCTACCAC 58.826 55.000 0.00 0.00 0.00 4.16
74 75 1.546773 GGGCATGAACAACCTACCACA 60.547 52.381 0.00 0.00 0.00 4.17
75 76 1.539827 GGCATGAACAACCTACCACAC 59.460 52.381 0.00 0.00 0.00 3.82
76 77 1.539827 GCATGAACAACCTACCACACC 59.460 52.381 0.00 0.00 0.00 4.16
77 78 2.814097 GCATGAACAACCTACCACACCT 60.814 50.000 0.00 0.00 0.00 4.00
78 79 3.558321 GCATGAACAACCTACCACACCTA 60.558 47.826 0.00 0.00 0.00 3.08
79 80 4.843728 CATGAACAACCTACCACACCTAT 58.156 43.478 0.00 0.00 0.00 2.57
80 81 4.280436 TGAACAACCTACCACACCTATG 57.720 45.455 0.00 0.00 0.00 2.23
81 82 3.008594 TGAACAACCTACCACACCTATGG 59.991 47.826 0.00 0.00 46.10 2.74
82 83 1.913419 ACAACCTACCACACCTATGGG 59.087 52.381 0.00 0.00 44.81 4.00
83 84 2.193127 CAACCTACCACACCTATGGGA 58.807 52.381 0.25 0.00 44.81 4.37
95 96 2.604046 CTATGGGAGGAACCTCAACG 57.396 55.000 20.39 2.79 44.40 4.10
96 97 2.108168 CTATGGGAGGAACCTCAACGA 58.892 52.381 20.39 4.19 44.40 3.85
97 98 0.905357 ATGGGAGGAACCTCAACGAG 59.095 55.000 20.39 0.00 44.40 4.18
108 109 3.923017 CCTCAACGAGGCAAAGAAATT 57.077 42.857 0.00 0.00 43.29 1.82
109 110 4.243007 CCTCAACGAGGCAAAGAAATTT 57.757 40.909 0.00 0.00 43.29 1.82
110 111 4.229876 CCTCAACGAGGCAAAGAAATTTC 58.770 43.478 10.33 10.33 43.29 2.17
111 112 4.261572 CCTCAACGAGGCAAAGAAATTTCA 60.262 41.667 19.99 0.00 43.29 2.69
112 113 4.858935 TCAACGAGGCAAAGAAATTTCAG 58.141 39.130 19.99 10.32 0.00 3.02
113 114 3.288809 ACGAGGCAAAGAAATTTCAGC 57.711 42.857 19.99 18.28 0.00 4.26
114 115 2.245096 CGAGGCAAAGAAATTTCAGCG 58.755 47.619 19.99 8.40 0.00 5.18
115 116 2.095768 CGAGGCAAAGAAATTTCAGCGA 60.096 45.455 19.99 0.00 0.00 4.93
116 117 3.496155 GAGGCAAAGAAATTTCAGCGAG 58.504 45.455 19.99 6.40 0.00 5.03
117 118 1.988467 GGCAAAGAAATTTCAGCGAGC 59.012 47.619 19.99 14.54 0.00 5.03
118 119 2.352127 GGCAAAGAAATTTCAGCGAGCT 60.352 45.455 19.99 0.00 0.00 4.09
119 120 3.311966 GCAAAGAAATTTCAGCGAGCTT 58.688 40.909 19.99 1.14 0.00 3.74
120 121 4.475944 GCAAAGAAATTTCAGCGAGCTTA 58.524 39.130 19.99 0.00 0.00 3.09
121 122 4.917415 GCAAAGAAATTTCAGCGAGCTTAA 59.083 37.500 19.99 0.00 0.00 1.85
122 123 5.402270 GCAAAGAAATTTCAGCGAGCTTAAA 59.598 36.000 19.99 6.87 0.00 1.52
123 124 6.399354 GCAAAGAAATTTCAGCGAGCTTAAAG 60.399 38.462 19.99 0.51 0.00 1.85
124 125 6.560253 AAGAAATTTCAGCGAGCTTAAAGA 57.440 33.333 19.99 0.00 0.00 2.52
125 126 5.932661 AGAAATTTCAGCGAGCTTAAAGAC 58.067 37.500 19.99 4.80 0.00 3.01
126 127 5.703130 AGAAATTTCAGCGAGCTTAAAGACT 59.297 36.000 19.99 6.50 0.00 3.24
127 128 4.935885 ATTTCAGCGAGCTTAAAGACTG 57.064 40.909 9.78 0.00 0.00 3.51
128 129 2.370281 TCAGCGAGCTTAAAGACTGG 57.630 50.000 0.00 0.00 0.00 4.00
129 130 1.893137 TCAGCGAGCTTAAAGACTGGA 59.107 47.619 0.00 0.00 0.00 3.86
130 131 1.996191 CAGCGAGCTTAAAGACTGGAC 59.004 52.381 0.00 0.00 0.00 4.02
131 132 0.992802 GCGAGCTTAAAGACTGGACG 59.007 55.000 0.00 0.00 0.00 4.79
132 133 1.669211 GCGAGCTTAAAGACTGGACGT 60.669 52.381 0.00 0.00 0.00 4.34
133 134 2.673833 CGAGCTTAAAGACTGGACGTT 58.326 47.619 0.00 0.00 0.00 3.99
134 135 2.408704 CGAGCTTAAAGACTGGACGTTG 59.591 50.000 0.00 0.00 0.00 4.10
135 136 2.737252 GAGCTTAAAGACTGGACGTTGG 59.263 50.000 0.00 0.00 0.00 3.77
136 137 2.104281 AGCTTAAAGACTGGACGTTGGT 59.896 45.455 0.00 0.00 0.00 3.67
137 138 2.223377 GCTTAAAGACTGGACGTTGGTG 59.777 50.000 0.00 0.00 0.00 4.17
138 139 2.536761 TAAAGACTGGACGTTGGTGG 57.463 50.000 0.00 0.00 0.00 4.61
139 140 0.834612 AAAGACTGGACGTTGGTGGA 59.165 50.000 0.00 0.00 0.00 4.02
140 141 1.056660 AAGACTGGACGTTGGTGGAT 58.943 50.000 0.00 0.00 0.00 3.41
141 142 0.321671 AGACTGGACGTTGGTGGATG 59.678 55.000 0.00 0.00 0.00 3.51
142 143 1.298859 GACTGGACGTTGGTGGATGC 61.299 60.000 0.00 0.00 0.00 3.91
143 144 1.302431 CTGGACGTTGGTGGATGCA 60.302 57.895 0.00 0.00 0.00 3.96
144 145 0.677731 CTGGACGTTGGTGGATGCAT 60.678 55.000 0.00 0.00 0.00 3.96
145 146 0.615850 TGGACGTTGGTGGATGCATA 59.384 50.000 0.00 0.00 0.00 3.14
146 147 1.299541 GGACGTTGGTGGATGCATAG 58.700 55.000 0.00 0.00 0.00 2.23
147 148 1.134521 GGACGTTGGTGGATGCATAGA 60.135 52.381 0.00 0.00 0.00 1.98
148 149 2.205074 GACGTTGGTGGATGCATAGAG 58.795 52.381 0.00 0.00 0.00 2.43
149 150 1.831106 ACGTTGGTGGATGCATAGAGA 59.169 47.619 0.00 0.00 0.00 3.10
150 151 2.435805 ACGTTGGTGGATGCATAGAGAT 59.564 45.455 0.00 0.00 0.00 2.75
151 152 3.641436 ACGTTGGTGGATGCATAGAGATA 59.359 43.478 0.00 0.00 0.00 1.98
152 153 4.100963 ACGTTGGTGGATGCATAGAGATAA 59.899 41.667 0.00 0.00 0.00 1.75
153 154 4.449068 CGTTGGTGGATGCATAGAGATAAC 59.551 45.833 0.00 0.86 0.00 1.89
154 155 5.615289 GTTGGTGGATGCATAGAGATAACT 58.385 41.667 0.00 0.00 0.00 2.24
155 156 5.219343 TGGTGGATGCATAGAGATAACTG 57.781 43.478 0.00 0.00 0.00 3.16
156 157 4.901250 TGGTGGATGCATAGAGATAACTGA 59.099 41.667 0.00 0.00 0.00 3.41
157 158 5.011431 TGGTGGATGCATAGAGATAACTGAG 59.989 44.000 0.00 0.00 0.00 3.35
158 159 5.477510 GTGGATGCATAGAGATAACTGAGG 58.522 45.833 0.00 0.00 0.00 3.86
159 160 5.244851 GTGGATGCATAGAGATAACTGAGGA 59.755 44.000 0.00 0.00 0.00 3.71
160 161 6.021672 TGGATGCATAGAGATAACTGAGGAT 58.978 40.000 0.00 0.00 0.00 3.24
161 162 6.499699 TGGATGCATAGAGATAACTGAGGATT 59.500 38.462 0.00 0.00 0.00 3.01
162 163 7.041107 GGATGCATAGAGATAACTGAGGATTC 58.959 42.308 0.00 0.00 0.00 2.52
163 164 6.983906 TGCATAGAGATAACTGAGGATTCA 57.016 37.500 0.00 0.00 0.00 2.57
175 176 5.452078 CTGAGGATTCAGTCATAGGAGTC 57.548 47.826 0.00 0.00 44.74 3.36
176 177 3.885901 TGAGGATTCAGTCATAGGAGTCG 59.114 47.826 0.00 0.00 0.00 4.18
177 178 4.138290 GAGGATTCAGTCATAGGAGTCGA 58.862 47.826 0.00 0.00 0.00 4.20
178 179 3.886505 AGGATTCAGTCATAGGAGTCGAC 59.113 47.826 7.70 7.70 0.00 4.20
179 180 3.004944 GGATTCAGTCATAGGAGTCGACC 59.995 52.174 13.01 3.55 0.00 4.79
180 181 2.801077 TCAGTCATAGGAGTCGACCA 57.199 50.000 13.01 0.00 0.00 4.02
181 182 3.081710 TCAGTCATAGGAGTCGACCAA 57.918 47.619 13.01 0.00 0.00 3.67
182 183 3.632333 TCAGTCATAGGAGTCGACCAAT 58.368 45.455 13.01 0.11 0.00 3.16
183 184 3.632604 TCAGTCATAGGAGTCGACCAATC 59.367 47.826 13.01 3.05 0.00 2.67
184 185 3.634448 CAGTCATAGGAGTCGACCAATCT 59.366 47.826 13.01 7.32 0.00 2.40
185 186 3.886505 AGTCATAGGAGTCGACCAATCTC 59.113 47.826 13.01 2.22 0.00 2.75
186 187 3.886505 GTCATAGGAGTCGACCAATCTCT 59.113 47.826 13.01 5.85 0.00 3.10
187 188 4.339814 GTCATAGGAGTCGACCAATCTCTT 59.660 45.833 13.01 1.59 0.00 2.85
188 189 4.339530 TCATAGGAGTCGACCAATCTCTTG 59.660 45.833 13.01 6.73 0.00 3.02
189 190 1.205893 AGGAGTCGACCAATCTCTTGC 59.794 52.381 13.01 0.00 0.00 4.01
190 191 1.205893 GGAGTCGACCAATCTCTTGCT 59.794 52.381 13.01 0.00 0.00 3.91
191 192 2.354203 GGAGTCGACCAATCTCTTGCTT 60.354 50.000 13.01 0.00 0.00 3.91
192 193 2.670414 GAGTCGACCAATCTCTTGCTTG 59.330 50.000 13.01 0.00 0.00 4.01
193 194 2.037772 AGTCGACCAATCTCTTGCTTGT 59.962 45.455 13.01 0.00 0.00 3.16
194 195 2.808543 GTCGACCAATCTCTTGCTTGTT 59.191 45.455 3.51 0.00 0.00 2.83
195 196 3.994392 GTCGACCAATCTCTTGCTTGTTA 59.006 43.478 3.51 0.00 0.00 2.41
196 197 4.631813 GTCGACCAATCTCTTGCTTGTTAT 59.368 41.667 3.51 0.00 0.00 1.89
197 198 5.122396 GTCGACCAATCTCTTGCTTGTTATT 59.878 40.000 3.51 0.00 0.00 1.40
198 199 5.122239 TCGACCAATCTCTTGCTTGTTATTG 59.878 40.000 0.00 0.00 0.00 1.90
199 200 5.644644 GACCAATCTCTTGCTTGTTATTGG 58.355 41.667 14.92 14.92 45.67 3.16
200 201 5.324409 ACCAATCTCTTGCTTGTTATTGGA 58.676 37.500 20.29 0.00 43.89 3.53
201 202 5.774690 ACCAATCTCTTGCTTGTTATTGGAA 59.225 36.000 20.29 0.00 43.89 3.53
202 203 6.267471 ACCAATCTCTTGCTTGTTATTGGAAA 59.733 34.615 20.29 0.00 43.89 3.13
203 204 6.810182 CCAATCTCTTGCTTGTTATTGGAAAG 59.190 38.462 12.51 0.00 43.89 2.62
204 205 7.309377 CCAATCTCTTGCTTGTTATTGGAAAGA 60.309 37.037 12.51 0.00 43.89 2.52
205 206 6.808008 TCTCTTGCTTGTTATTGGAAAGAG 57.192 37.500 0.00 0.00 0.00 2.85
206 207 6.299141 TCTCTTGCTTGTTATTGGAAAGAGT 58.701 36.000 9.02 0.00 0.00 3.24
207 208 6.428159 TCTCTTGCTTGTTATTGGAAAGAGTC 59.572 38.462 9.02 0.00 0.00 3.36
221 222 6.179906 GGAAAGAGTCCATGATATCTTCCA 57.820 41.667 3.98 0.00 46.97 3.53
222 223 5.994668 GGAAAGAGTCCATGATATCTTCCAC 59.005 44.000 3.98 0.00 46.97 4.02
223 224 6.408548 GGAAAGAGTCCATGATATCTTCCACA 60.409 42.308 3.98 0.00 46.97 4.17
224 225 5.543507 AGAGTCCATGATATCTTCCACAC 57.456 43.478 3.98 0.00 0.00 3.82
225 226 4.346418 AGAGTCCATGATATCTTCCACACC 59.654 45.833 3.98 0.00 0.00 4.16
226 227 4.302067 AGTCCATGATATCTTCCACACCT 58.698 43.478 3.98 0.00 0.00 4.00
227 228 5.467738 AGTCCATGATATCTTCCACACCTA 58.532 41.667 3.98 0.00 0.00 3.08
228 229 5.541868 AGTCCATGATATCTTCCACACCTAG 59.458 44.000 3.98 0.00 0.00 3.02
229 230 5.540337 GTCCATGATATCTTCCACACCTAGA 59.460 44.000 3.98 0.00 0.00 2.43
230 231 6.042093 GTCCATGATATCTTCCACACCTAGAA 59.958 42.308 3.98 0.00 0.00 2.10
231 232 6.615316 TCCATGATATCTTCCACACCTAGAAA 59.385 38.462 3.98 0.00 0.00 2.52
232 233 7.293299 TCCATGATATCTTCCACACCTAGAAAT 59.707 37.037 3.98 0.00 0.00 2.17
233 234 8.597167 CCATGATATCTTCCACACCTAGAAATA 58.403 37.037 3.98 0.00 0.00 1.40
236 237 9.832445 TGATATCTTCCACACCTAGAAATAAAC 57.168 33.333 3.98 0.00 0.00 2.01
237 238 9.832445 GATATCTTCCACACCTAGAAATAAACA 57.168 33.333 0.00 0.00 0.00 2.83
239 240 7.979444 TCTTCCACACCTAGAAATAAACAAG 57.021 36.000 0.00 0.00 0.00 3.16
240 241 7.741785 TCTTCCACACCTAGAAATAAACAAGA 58.258 34.615 0.00 0.00 0.00 3.02
241 242 8.383175 TCTTCCACACCTAGAAATAAACAAGAT 58.617 33.333 0.00 0.00 0.00 2.40
242 243 8.934023 TTCCACACCTAGAAATAAACAAGATT 57.066 30.769 0.00 0.00 0.00 2.40
243 244 8.934023 TCCACACCTAGAAATAAACAAGATTT 57.066 30.769 0.00 0.00 0.00 2.17
261 262 9.959749 ACAAGATTTAGATCGATCTTAGAGTTC 57.040 33.333 31.55 18.67 39.83 3.01
264 265 9.793259 AGATTTAGATCGATCTTAGAGTTCTCT 57.207 33.333 31.55 17.95 38.32 3.10
312 313 7.816640 TGAGAATAAGTGAATAGGTTTTGTGC 58.183 34.615 0.00 0.00 0.00 4.57
313 314 7.446931 TGAGAATAAGTGAATAGGTTTTGTGCA 59.553 33.333 0.00 0.00 0.00 4.57
314 315 8.177119 AGAATAAGTGAATAGGTTTTGTGCAA 57.823 30.769 0.00 0.00 0.00 4.08
315 316 8.299570 AGAATAAGTGAATAGGTTTTGTGCAAG 58.700 33.333 0.00 0.00 0.00 4.01
316 317 4.853924 AGTGAATAGGTTTTGTGCAAGG 57.146 40.909 0.00 0.00 0.00 3.61
317 318 4.469657 AGTGAATAGGTTTTGTGCAAGGA 58.530 39.130 0.00 0.00 0.00 3.36
318 319 4.892934 AGTGAATAGGTTTTGTGCAAGGAA 59.107 37.500 0.00 0.00 0.00 3.36
319 320 5.010012 AGTGAATAGGTTTTGTGCAAGGAAG 59.990 40.000 0.00 0.00 0.00 3.46
320 321 5.009610 GTGAATAGGTTTTGTGCAAGGAAGA 59.990 40.000 0.00 0.00 0.00 2.87
321 322 5.009610 TGAATAGGTTTTGTGCAAGGAAGAC 59.990 40.000 0.00 0.00 0.00 3.01
322 323 1.676006 AGGTTTTGTGCAAGGAAGACG 59.324 47.619 0.00 0.00 0.00 4.18
323 324 1.404035 GGTTTTGTGCAAGGAAGACGT 59.596 47.619 0.00 0.00 0.00 4.34
324 325 2.159296 GGTTTTGTGCAAGGAAGACGTT 60.159 45.455 0.00 0.00 0.00 3.99
325 326 3.065648 GGTTTTGTGCAAGGAAGACGTTA 59.934 43.478 0.00 0.00 0.00 3.18
326 327 4.261447 GGTTTTGTGCAAGGAAGACGTTAT 60.261 41.667 0.00 0.00 0.00 1.89
327 328 5.278604 GTTTTGTGCAAGGAAGACGTTATT 58.721 37.500 0.00 0.00 0.00 1.40
328 329 4.481930 TTGTGCAAGGAAGACGTTATTG 57.518 40.909 0.00 0.00 0.00 1.90
329 330 3.472652 TGTGCAAGGAAGACGTTATTGT 58.527 40.909 0.00 0.00 0.00 2.71
330 331 3.249799 TGTGCAAGGAAGACGTTATTGTG 59.750 43.478 0.00 0.00 0.00 3.33
331 332 3.496884 GTGCAAGGAAGACGTTATTGTGA 59.503 43.478 0.00 0.00 0.00 3.58
332 333 4.024387 GTGCAAGGAAGACGTTATTGTGAA 60.024 41.667 0.00 0.00 0.00 3.18
333 334 4.213270 TGCAAGGAAGACGTTATTGTGAAG 59.787 41.667 0.00 0.00 0.00 3.02
334 335 4.451096 GCAAGGAAGACGTTATTGTGAAGA 59.549 41.667 0.00 0.00 0.00 2.87
335 336 5.389935 GCAAGGAAGACGTTATTGTGAAGAG 60.390 44.000 0.00 0.00 0.00 2.85
336 337 4.246458 AGGAAGACGTTATTGTGAAGAGC 58.754 43.478 0.00 0.00 0.00 4.09
337 338 3.060895 GGAAGACGTTATTGTGAAGAGCG 59.939 47.826 0.00 0.00 32.51 5.03
338 339 2.607187 AGACGTTATTGTGAAGAGCGG 58.393 47.619 0.00 0.00 30.44 5.52
339 340 1.060698 GACGTTATTGTGAAGAGCGGC 59.939 52.381 0.00 0.00 30.44 6.53
340 341 0.025001 CGTTATTGTGAAGAGCGGCG 59.975 55.000 0.51 0.51 0.00 6.46
341 342 0.247695 GTTATTGTGAAGAGCGGCGC 60.248 55.000 26.86 26.86 0.00 6.53
342 343 0.672091 TTATTGTGAAGAGCGGCGCA 60.672 50.000 35.02 10.19 0.00 6.09
343 344 1.083806 TATTGTGAAGAGCGGCGCAG 61.084 55.000 35.02 6.41 0.00 5.18
360 361 2.025156 GCAAAGCGCGCATATGCT 59.975 55.556 33.66 14.44 44.97 3.79
365 366 2.819667 AGCGCGCATATGCTTCTAG 58.180 52.632 35.10 10.35 38.57 2.43
366 367 0.032678 AGCGCGCATATGCTTCTAGT 59.967 50.000 35.10 3.94 38.57 2.57
367 368 1.269723 AGCGCGCATATGCTTCTAGTA 59.730 47.619 35.10 0.00 38.57 1.82
368 369 2.094494 AGCGCGCATATGCTTCTAGTAT 60.094 45.455 35.10 2.61 38.57 2.12
369 370 2.668457 GCGCGCATATGCTTCTAGTATT 59.332 45.455 29.10 0.00 39.32 1.89
370 371 3.482598 GCGCGCATATGCTTCTAGTATTG 60.483 47.826 29.10 6.81 39.32 1.90
371 372 3.061295 CGCGCATATGCTTCTAGTATTGG 59.939 47.826 24.56 6.32 39.32 3.16
372 373 3.997021 GCGCATATGCTTCTAGTATTGGT 59.003 43.478 24.56 0.00 39.32 3.67
373 374 4.452455 GCGCATATGCTTCTAGTATTGGTT 59.548 41.667 24.56 0.00 39.32 3.67
374 375 5.049405 GCGCATATGCTTCTAGTATTGGTTT 60.049 40.000 24.56 0.00 39.32 3.27
375 376 6.147164 GCGCATATGCTTCTAGTATTGGTTTA 59.853 38.462 24.56 0.00 39.32 2.01
376 377 7.148407 GCGCATATGCTTCTAGTATTGGTTTAT 60.148 37.037 24.56 0.00 39.32 1.40
377 378 8.171196 CGCATATGCTTCTAGTATTGGTTTATG 58.829 37.037 24.56 0.00 39.32 1.90
378 379 9.003658 GCATATGCTTCTAGTATTGGTTTATGT 57.996 33.333 20.64 0.00 38.21 2.29
381 382 8.894768 ATGCTTCTAGTATTGGTTTATGTCTC 57.105 34.615 0.00 0.00 0.00 3.36
382 383 8.079211 TGCTTCTAGTATTGGTTTATGTCTCT 57.921 34.615 0.00 0.00 0.00 3.10
383 384 9.197306 TGCTTCTAGTATTGGTTTATGTCTCTA 57.803 33.333 0.00 0.00 0.00 2.43
387 388 8.512956 TCTAGTATTGGTTTATGTCTCTATCGC 58.487 37.037 0.00 0.00 0.00 4.58
388 389 7.050970 AGTATTGGTTTATGTCTCTATCGCA 57.949 36.000 0.00 0.00 0.00 5.10
389 390 7.497595 AGTATTGGTTTATGTCTCTATCGCAA 58.502 34.615 0.00 0.00 0.00 4.85
390 391 8.150945 AGTATTGGTTTATGTCTCTATCGCAAT 58.849 33.333 0.00 0.00 0.00 3.56
391 392 6.603237 TTGGTTTATGTCTCTATCGCAATG 57.397 37.500 0.00 0.00 0.00 2.82
392 393 5.670485 TGGTTTATGTCTCTATCGCAATGT 58.330 37.500 0.00 0.00 0.00 2.71
393 394 5.523552 TGGTTTATGTCTCTATCGCAATGTG 59.476 40.000 0.00 0.00 0.00 3.21
394 395 5.523916 GGTTTATGTCTCTATCGCAATGTGT 59.476 40.000 0.00 0.00 0.00 3.72
395 396 6.700081 GGTTTATGTCTCTATCGCAATGTGTA 59.300 38.462 0.00 0.00 0.00 2.90
396 397 7.096023 GGTTTATGTCTCTATCGCAATGTGTAG 60.096 40.741 0.00 0.00 0.00 2.74
397 398 4.307443 TGTCTCTATCGCAATGTGTAGG 57.693 45.455 0.00 0.00 0.00 3.18
398 399 3.068165 TGTCTCTATCGCAATGTGTAGGG 59.932 47.826 0.00 0.00 0.00 3.53
399 400 2.035961 TCTCTATCGCAATGTGTAGGGC 59.964 50.000 0.00 0.00 0.00 5.19
400 401 1.760029 TCTATCGCAATGTGTAGGGCA 59.240 47.619 0.00 0.00 0.00 5.36
401 402 2.169561 TCTATCGCAATGTGTAGGGCAA 59.830 45.455 0.00 0.00 0.00 4.52
402 403 1.094785 ATCGCAATGTGTAGGGCAAC 58.905 50.000 0.00 0.00 0.00 4.17
403 404 0.036164 TCGCAATGTGTAGGGCAACT 59.964 50.000 0.00 0.00 0.00 3.16
404 405 1.276705 TCGCAATGTGTAGGGCAACTA 59.723 47.619 0.00 0.00 0.00 2.24
405 406 2.093181 TCGCAATGTGTAGGGCAACTAT 60.093 45.455 0.00 0.00 33.43 2.12
406 407 2.032054 CGCAATGTGTAGGGCAACTATG 59.968 50.000 0.00 0.00 33.43 2.23
407 408 3.016736 GCAATGTGTAGGGCAACTATGT 58.983 45.455 0.00 0.00 33.43 2.29
408 409 4.196193 GCAATGTGTAGGGCAACTATGTA 58.804 43.478 0.00 0.00 33.43 2.29
409 410 4.273480 GCAATGTGTAGGGCAACTATGTAG 59.727 45.833 0.00 0.00 33.43 2.74
410 411 3.536956 TGTGTAGGGCAACTATGTAGC 57.463 47.619 0.00 0.00 33.43 3.58
411 412 3.104512 TGTGTAGGGCAACTATGTAGCT 58.895 45.455 0.00 0.00 33.43 3.32
412 413 4.283337 TGTGTAGGGCAACTATGTAGCTA 58.717 43.478 0.00 0.00 33.43 3.32
413 414 4.098960 TGTGTAGGGCAACTATGTAGCTAC 59.901 45.833 17.30 17.30 33.43 3.58
414 415 3.640029 TGTAGGGCAACTATGTAGCTACC 59.360 47.826 21.01 2.82 33.43 3.18
415 416 3.047695 AGGGCAACTATGTAGCTACCT 57.952 47.619 21.01 13.86 0.00 3.08
514 517 2.036098 CCTGTTGGGCCTGCATCA 59.964 61.111 4.53 0.00 0.00 3.07
753 758 2.203728 TACTGCCTCACCACCGGT 60.204 61.111 0.00 0.00 35.62 5.28
775 780 1.869754 GCGGCTGCGATTTCAGATCTA 60.870 52.381 0.00 0.00 36.19 1.98
787 792 5.784578 TTTCAGATCTACGCTATAGGCAA 57.215 39.130 1.04 0.00 41.91 4.52
790 798 3.188667 CAGATCTACGCTATAGGCAACGA 59.811 47.826 1.04 0.00 46.39 3.85
795 812 1.227147 GCTATAGGCAACGACGGCA 60.227 57.895 1.04 0.00 46.39 5.69
893 912 1.890979 GCCGTCCTCGTCTCCGATA 60.891 63.158 0.00 0.00 43.27 2.92
962 982 4.101119 GCCTTTAAGCTAGGTGTAGGATCA 59.899 45.833 16.96 0.00 35.13 2.92
968 988 6.567602 AAGCTAGGTGTAGGATCAATTTCT 57.432 37.500 0.00 0.00 0.00 2.52
982 1002 4.447290 TCAATTTCTCACTGAACGAACCA 58.553 39.130 0.00 0.00 33.88 3.67
1005 1025 4.395625 TCGATGTCGACTAGGTTATGGAT 58.604 43.478 17.92 0.00 44.22 3.41
1041 1061 1.203237 TAATCCAGGCAGCAGCACTA 58.797 50.000 2.65 0.00 44.61 2.74
1135 1155 3.352648 CGTTATGGTCCATTGTTTCCCT 58.647 45.455 10.33 0.00 0.00 4.20
1245 1265 2.038814 TTGCCAGGCTTGTCGAGACA 62.039 55.000 14.15 1.24 35.01 3.41
1440 1461 3.511146 GGGAGCTTAGAGGAGAGATGATG 59.489 52.174 0.00 0.00 0.00 3.07
1501 1522 3.326521 AGCCCAAGATGGTATCCATACA 58.673 45.455 0.99 0.00 45.26 2.29
1606 1631 6.318648 GTGATGCCATTTTCAGGACTACATTA 59.681 38.462 0.00 0.00 0.00 1.90
1622 1647 7.092846 GGACTACATTAGGGCAATAGATGGTAT 60.093 40.741 0.00 0.00 0.00 2.73
1638 1663 2.292267 GGTATTCATGTCACTGCCAGG 58.708 52.381 0.00 0.00 0.00 4.45
1670 1695 0.251354 CAGTCTGCAGCATACAGGGT 59.749 55.000 9.47 0.00 35.78 4.34
1683 1708 1.270907 ACAGGGTGAGGAAGCACTAG 58.729 55.000 0.00 0.00 38.78 2.57
1720 1745 3.058016 GCTTGCTGCTGTTGACTTTGATA 60.058 43.478 0.00 0.00 38.95 2.15
1785 1810 5.678871 GCATGATGCAAACATTCTCACTGAT 60.679 40.000 13.36 0.00 44.26 2.90
1823 1848 1.820581 GGATCAACATCCCCGACGA 59.179 57.895 0.00 0.00 42.91 4.20
1863 1888 2.111878 GGCTATGCATGTCGGCCT 59.888 61.111 20.04 0.00 39.68 5.19
1901 1926 3.670625 TCAGGAAAACAAGGTACCATCG 58.329 45.455 15.94 4.07 0.00 3.84
1921 1946 2.739932 CGCAATGAGTTCTCTGGTAGGG 60.740 54.545 1.53 0.00 0.00 3.53
2007 2032 1.076024 AGGGCATTTGGAGCTCTGAAA 59.924 47.619 14.64 13.09 42.30 2.69
2014 2039 5.680665 GCATTTGGAGCTCTGAAAAATAGGG 60.681 44.000 14.64 5.31 0.00 3.53
2035 2060 4.410555 GGGTTAAGATCCTGGATCAGAAGT 59.589 45.833 32.30 13.45 41.12 3.01
2068 2093 6.351881 CCCATACTCCACTCAAGTTAAGCTAA 60.352 42.308 0.00 0.00 0.00 3.09
2129 2154 0.593128 GGCTTTGATGAACACGTGCT 59.407 50.000 17.22 2.15 0.00 4.40
2146 2171 1.270907 GCTTGAGGAGGAAGAGGTCA 58.729 55.000 0.00 0.00 0.00 4.02
2242 2267 2.356278 GGGCAGAGGCAATGTGGA 59.644 61.111 0.00 0.00 43.71 4.02
2286 2311 6.939730 GGATTTGAAGAAGAGGAAGAAGAAGT 59.060 38.462 0.00 0.00 0.00 3.01
2294 2319 5.552870 AGAGGAAGAAGAAGTAGCAACAA 57.447 39.130 0.00 0.00 0.00 2.83
2421 2480 9.630098 ATGATTTGAACTGTCATTTGATTGTAC 57.370 29.630 0.00 0.00 32.48 2.90
2422 2481 8.081633 TGATTTGAACTGTCATTTGATTGTACC 58.918 33.333 0.00 0.00 32.48 3.34
2430 2489 6.356556 TGTCATTTGATTGTACCTAGGATGG 58.643 40.000 17.98 0.00 0.00 3.51
2454 2513 6.204882 GGACTGTCATTTGTTTAACTAGCTGT 59.795 38.462 10.38 0.00 0.00 4.40
2576 2637 1.070289 TGCAATGCAGGCAATCAAACA 59.930 42.857 12.89 0.00 38.54 2.83
2577 2638 2.289756 TGCAATGCAGGCAATCAAACAT 60.290 40.909 12.89 0.00 38.54 2.71
2578 2639 2.745281 GCAATGCAGGCAATCAAACATT 59.255 40.909 0.00 0.00 0.00 2.71
2579 2640 3.425625 GCAATGCAGGCAATCAAACATTG 60.426 43.478 0.00 8.71 44.42 2.82
2580 2641 3.965379 ATGCAGGCAATCAAACATTGA 57.035 38.095 0.00 0.00 45.01 2.57
2581 2642 3.306917 TGCAGGCAATCAAACATTGAG 57.693 42.857 0.00 0.00 43.98 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
12 13 3.520290 TGTTGACGTATGGATCACTCC 57.480 47.619 0.00 0.00 42.45 3.85
13 14 4.242475 TGTTGTTGACGTATGGATCACTC 58.758 43.478 0.00 0.00 0.00 3.51
14 15 4.245660 CTGTTGTTGACGTATGGATCACT 58.754 43.478 0.00 0.00 0.00 3.41
15 16 3.994392 ACTGTTGTTGACGTATGGATCAC 59.006 43.478 0.00 0.00 0.00 3.06
16 17 4.242475 GACTGTTGTTGACGTATGGATCA 58.758 43.478 0.00 0.00 0.00 2.92
17 18 3.303495 CGACTGTTGTTGACGTATGGATC 59.697 47.826 0.00 0.00 0.00 3.36
18 19 3.057104 TCGACTGTTGTTGACGTATGGAT 60.057 43.478 0.00 0.00 32.00 3.41
19 20 2.293955 TCGACTGTTGTTGACGTATGGA 59.706 45.455 0.00 0.00 32.00 3.41
20 21 2.661675 CTCGACTGTTGTTGACGTATGG 59.338 50.000 0.00 0.00 33.36 2.74
21 22 2.661675 CCTCGACTGTTGTTGACGTATG 59.338 50.000 0.00 0.00 33.36 2.39
22 23 2.555325 TCCTCGACTGTTGTTGACGTAT 59.445 45.455 0.00 0.00 33.36 3.06
23 24 1.948834 TCCTCGACTGTTGTTGACGTA 59.051 47.619 0.00 0.00 33.36 3.57
24 25 0.742505 TCCTCGACTGTTGTTGACGT 59.257 50.000 0.00 0.00 33.36 4.34
25 26 1.986378 GATCCTCGACTGTTGTTGACG 59.014 52.381 0.00 0.00 33.36 4.35
26 27 3.246619 GAGATCCTCGACTGTTGTTGAC 58.753 50.000 0.00 0.00 33.36 3.18
27 28 3.577649 GAGATCCTCGACTGTTGTTGA 57.422 47.619 0.00 0.00 35.46 3.18
39 40 1.043816 TGCCCATCTTCGAGATCCTC 58.956 55.000 0.00 0.00 31.32 3.71
40 41 1.347050 CATGCCCATCTTCGAGATCCT 59.653 52.381 0.00 0.00 31.32 3.24
41 42 1.345741 TCATGCCCATCTTCGAGATCC 59.654 52.381 0.00 0.00 31.32 3.36
42 43 2.805099 GTTCATGCCCATCTTCGAGATC 59.195 50.000 0.00 0.00 31.32 2.75
43 44 2.171237 TGTTCATGCCCATCTTCGAGAT 59.829 45.455 0.00 0.00 34.74 2.75
44 45 1.554617 TGTTCATGCCCATCTTCGAGA 59.445 47.619 0.00 0.00 0.00 4.04
45 46 2.028420 TGTTCATGCCCATCTTCGAG 57.972 50.000 0.00 0.00 0.00 4.04
46 47 2.083774 GTTGTTCATGCCCATCTTCGA 58.916 47.619 0.00 0.00 0.00 3.71
47 48 1.133025 GGTTGTTCATGCCCATCTTCG 59.867 52.381 0.00 0.00 0.00 3.79
48 49 2.450476 AGGTTGTTCATGCCCATCTTC 58.550 47.619 0.00 0.00 0.00 2.87
49 50 2.610438 AGGTTGTTCATGCCCATCTT 57.390 45.000 0.00 0.00 0.00 2.40
50 51 2.357154 GGTAGGTTGTTCATGCCCATCT 60.357 50.000 0.00 0.00 0.00 2.90
51 52 2.024414 GGTAGGTTGTTCATGCCCATC 58.976 52.381 0.00 0.00 0.00 3.51
52 53 1.357420 TGGTAGGTTGTTCATGCCCAT 59.643 47.619 0.00 0.00 31.82 4.00
53 54 0.774276 TGGTAGGTTGTTCATGCCCA 59.226 50.000 0.00 0.00 31.82 5.36
54 55 1.173913 GTGGTAGGTTGTTCATGCCC 58.826 55.000 0.00 0.00 31.82 5.36
55 56 1.539827 GTGTGGTAGGTTGTTCATGCC 59.460 52.381 0.00 0.00 33.39 4.40
56 57 1.539827 GGTGTGGTAGGTTGTTCATGC 59.460 52.381 0.00 0.00 0.00 4.06
57 58 3.140325 AGGTGTGGTAGGTTGTTCATG 57.860 47.619 0.00 0.00 0.00 3.07
58 59 4.324254 CCATAGGTGTGGTAGGTTGTTCAT 60.324 45.833 0.00 0.00 34.46 2.57
59 60 3.008594 CCATAGGTGTGGTAGGTTGTTCA 59.991 47.826 0.00 0.00 34.46 3.18
60 61 3.606687 CCATAGGTGTGGTAGGTTGTTC 58.393 50.000 0.00 0.00 34.46 3.18
61 62 2.307686 CCCATAGGTGTGGTAGGTTGTT 59.692 50.000 0.00 0.00 37.57 2.83
62 63 1.913419 CCCATAGGTGTGGTAGGTTGT 59.087 52.381 0.00 0.00 37.57 3.32
63 64 2.170607 CTCCCATAGGTGTGGTAGGTTG 59.829 54.545 0.00 0.00 37.57 3.77
64 65 2.478292 CTCCCATAGGTGTGGTAGGTT 58.522 52.381 0.00 0.00 37.57 3.50
65 66 1.344087 CCTCCCATAGGTGTGGTAGGT 60.344 57.143 0.00 0.00 40.94 3.08
66 67 1.062428 TCCTCCCATAGGTGTGGTAGG 60.062 57.143 0.00 0.00 46.62 3.18
67 68 2.434702 GTTCCTCCCATAGGTGTGGTAG 59.565 54.545 0.00 0.00 46.62 3.18
68 69 2.474112 GTTCCTCCCATAGGTGTGGTA 58.526 52.381 0.00 0.00 46.62 3.25
69 70 1.286248 GTTCCTCCCATAGGTGTGGT 58.714 55.000 0.00 0.00 46.62 4.16
70 71 0.546598 GGTTCCTCCCATAGGTGTGG 59.453 60.000 0.00 0.00 46.62 4.17
71 72 1.486726 GAGGTTCCTCCCATAGGTGTG 59.513 57.143 7.57 0.00 46.62 3.82
72 73 1.080498 TGAGGTTCCTCCCATAGGTGT 59.920 52.381 15.20 0.00 46.62 4.16
73 74 1.879575 TGAGGTTCCTCCCATAGGTG 58.120 55.000 15.20 0.00 46.62 4.00
74 75 2.197465 GTTGAGGTTCCTCCCATAGGT 58.803 52.381 15.20 0.00 46.62 3.08
76 77 2.101582 CTCGTTGAGGTTCCTCCCATAG 59.898 54.545 15.20 5.50 36.75 2.23
77 78 2.108168 CTCGTTGAGGTTCCTCCCATA 58.892 52.381 15.20 0.00 36.75 2.74
78 79 0.905357 CTCGTTGAGGTTCCTCCCAT 59.095 55.000 15.20 0.00 36.75 4.00
79 80 1.192146 CCTCGTTGAGGTTCCTCCCA 61.192 60.000 15.20 0.72 44.25 4.37
80 81 1.597461 CCTCGTTGAGGTTCCTCCC 59.403 63.158 15.20 6.09 44.25 4.30
89 90 4.858935 TGAAATTTCTTTGCCTCGTTGAG 58.141 39.130 18.64 0.00 0.00 3.02
90 91 4.792704 GCTGAAATTTCTTTGCCTCGTTGA 60.793 41.667 18.64 0.00 0.00 3.18
91 92 3.426525 GCTGAAATTTCTTTGCCTCGTTG 59.573 43.478 18.64 0.00 0.00 4.10
92 93 3.642705 GCTGAAATTTCTTTGCCTCGTT 58.357 40.909 18.64 0.00 0.00 3.85
93 94 2.350772 CGCTGAAATTTCTTTGCCTCGT 60.351 45.455 18.64 0.00 0.00 4.18
94 95 2.095768 TCGCTGAAATTTCTTTGCCTCG 60.096 45.455 18.64 10.84 0.00 4.63
95 96 3.496155 CTCGCTGAAATTTCTTTGCCTC 58.504 45.455 18.64 0.00 0.00 4.70
96 97 2.352127 GCTCGCTGAAATTTCTTTGCCT 60.352 45.455 18.64 0.00 0.00 4.75
97 98 1.988467 GCTCGCTGAAATTTCTTTGCC 59.012 47.619 18.64 5.44 0.00 4.52
98 99 2.938869 AGCTCGCTGAAATTTCTTTGC 58.061 42.857 18.64 17.08 0.00 3.68
99 100 6.857964 TCTTTAAGCTCGCTGAAATTTCTTTG 59.142 34.615 18.64 10.09 0.00 2.77
100 101 6.858478 GTCTTTAAGCTCGCTGAAATTTCTTT 59.142 34.615 18.64 5.32 0.00 2.52
101 102 6.205658 AGTCTTTAAGCTCGCTGAAATTTCTT 59.794 34.615 18.64 5.89 0.00 2.52
102 103 5.703130 AGTCTTTAAGCTCGCTGAAATTTCT 59.297 36.000 18.64 0.00 0.00 2.52
103 104 5.792468 CAGTCTTTAAGCTCGCTGAAATTTC 59.208 40.000 11.41 11.41 0.00 2.17
104 105 5.335191 CCAGTCTTTAAGCTCGCTGAAATTT 60.335 40.000 2.05 0.00 0.00 1.82
105 106 4.154918 CCAGTCTTTAAGCTCGCTGAAATT 59.845 41.667 2.05 0.00 0.00 1.82
106 107 3.686726 CCAGTCTTTAAGCTCGCTGAAAT 59.313 43.478 2.05 0.00 0.00 2.17
107 108 3.067106 CCAGTCTTTAAGCTCGCTGAAA 58.933 45.455 1.71 1.71 0.00 2.69
108 109 2.299013 TCCAGTCTTTAAGCTCGCTGAA 59.701 45.455 0.00 0.00 0.00 3.02
109 110 1.893137 TCCAGTCTTTAAGCTCGCTGA 59.107 47.619 0.00 0.00 0.00 4.26
110 111 1.996191 GTCCAGTCTTTAAGCTCGCTG 59.004 52.381 0.00 0.00 0.00 5.18
111 112 1.402984 CGTCCAGTCTTTAAGCTCGCT 60.403 52.381 0.00 0.00 0.00 4.93
112 113 0.992802 CGTCCAGTCTTTAAGCTCGC 59.007 55.000 0.00 0.00 0.00 5.03
113 114 2.349297 ACGTCCAGTCTTTAAGCTCG 57.651 50.000 0.00 0.00 0.00 5.03
114 115 2.737252 CCAACGTCCAGTCTTTAAGCTC 59.263 50.000 0.00 0.00 0.00 4.09
115 116 2.104281 ACCAACGTCCAGTCTTTAAGCT 59.896 45.455 0.00 0.00 0.00 3.74
116 117 2.223377 CACCAACGTCCAGTCTTTAAGC 59.777 50.000 0.00 0.00 0.00 3.09
117 118 2.806244 CCACCAACGTCCAGTCTTTAAG 59.194 50.000 0.00 0.00 0.00 1.85
118 119 2.435069 TCCACCAACGTCCAGTCTTTAA 59.565 45.455 0.00 0.00 0.00 1.52
119 120 2.040939 TCCACCAACGTCCAGTCTTTA 58.959 47.619 0.00 0.00 0.00 1.85
120 121 0.834612 TCCACCAACGTCCAGTCTTT 59.165 50.000 0.00 0.00 0.00 2.52
121 122 1.056660 ATCCACCAACGTCCAGTCTT 58.943 50.000 0.00 0.00 0.00 3.01
122 123 0.321671 CATCCACCAACGTCCAGTCT 59.678 55.000 0.00 0.00 0.00 3.24
123 124 1.298859 GCATCCACCAACGTCCAGTC 61.299 60.000 0.00 0.00 0.00 3.51
124 125 1.302511 GCATCCACCAACGTCCAGT 60.303 57.895 0.00 0.00 0.00 4.00
125 126 0.677731 ATGCATCCACCAACGTCCAG 60.678 55.000 0.00 0.00 0.00 3.86
126 127 0.615850 TATGCATCCACCAACGTCCA 59.384 50.000 0.19 0.00 0.00 4.02
127 128 1.134521 TCTATGCATCCACCAACGTCC 60.135 52.381 0.19 0.00 0.00 4.79
128 129 2.159099 TCTCTATGCATCCACCAACGTC 60.159 50.000 0.19 0.00 0.00 4.34
129 130 1.831106 TCTCTATGCATCCACCAACGT 59.169 47.619 0.19 0.00 0.00 3.99
130 131 2.602257 TCTCTATGCATCCACCAACG 57.398 50.000 0.19 0.00 0.00 4.10
131 132 5.468072 CAGTTATCTCTATGCATCCACCAAC 59.532 44.000 0.19 2.25 0.00 3.77
132 133 5.366477 TCAGTTATCTCTATGCATCCACCAA 59.634 40.000 0.19 0.00 0.00 3.67
133 134 4.901250 TCAGTTATCTCTATGCATCCACCA 59.099 41.667 0.19 0.00 0.00 4.17
134 135 5.474578 TCAGTTATCTCTATGCATCCACC 57.525 43.478 0.19 0.00 0.00 4.61
135 136 5.244851 TCCTCAGTTATCTCTATGCATCCAC 59.755 44.000 0.19 0.00 0.00 4.02
136 137 5.397360 TCCTCAGTTATCTCTATGCATCCA 58.603 41.667 0.19 0.00 0.00 3.41
137 138 5.991933 TCCTCAGTTATCTCTATGCATCC 57.008 43.478 0.19 0.00 0.00 3.51
138 139 7.609960 TGAATCCTCAGTTATCTCTATGCATC 58.390 38.462 0.19 0.00 0.00 3.91
139 140 7.550597 TGAATCCTCAGTTATCTCTATGCAT 57.449 36.000 3.79 3.79 0.00 3.96
140 141 6.983906 TGAATCCTCAGTTATCTCTATGCA 57.016 37.500 0.00 0.00 0.00 3.96
154 155 3.885901 CGACTCCTATGACTGAATCCTCA 59.114 47.826 0.00 0.00 0.00 3.86
155 156 4.023536 GTCGACTCCTATGACTGAATCCTC 60.024 50.000 8.70 0.00 0.00 3.71
156 157 3.886505 GTCGACTCCTATGACTGAATCCT 59.113 47.826 8.70 0.00 0.00 3.24
157 158 3.004944 GGTCGACTCCTATGACTGAATCC 59.995 52.174 16.46 0.00 33.21 3.01
158 159 3.632604 TGGTCGACTCCTATGACTGAATC 59.367 47.826 16.46 0.00 33.21 2.52
159 160 3.632333 TGGTCGACTCCTATGACTGAAT 58.368 45.455 16.46 0.00 33.21 2.57
160 161 3.081710 TGGTCGACTCCTATGACTGAA 57.918 47.619 16.46 0.00 33.21 3.02
161 162 2.801077 TGGTCGACTCCTATGACTGA 57.199 50.000 16.46 0.00 33.21 3.41
162 163 3.634448 AGATTGGTCGACTCCTATGACTG 59.366 47.826 16.46 0.00 33.21 3.51
163 164 3.886505 GAGATTGGTCGACTCCTATGACT 59.113 47.826 16.46 4.68 33.21 3.41
164 165 3.886505 AGAGATTGGTCGACTCCTATGAC 59.113 47.826 16.46 0.00 0.00 3.06
165 166 4.171878 AGAGATTGGTCGACTCCTATGA 57.828 45.455 16.46 0.00 0.00 2.15
166 167 4.615949 CAAGAGATTGGTCGACTCCTATG 58.384 47.826 16.46 6.69 0.00 2.23
167 168 3.068873 GCAAGAGATTGGTCGACTCCTAT 59.931 47.826 16.46 1.83 0.00 2.57
168 169 2.427453 GCAAGAGATTGGTCGACTCCTA 59.573 50.000 16.46 0.00 0.00 2.94
169 170 1.205893 GCAAGAGATTGGTCGACTCCT 59.794 52.381 16.46 7.33 0.00 3.69
170 171 1.205893 AGCAAGAGATTGGTCGACTCC 59.794 52.381 16.46 0.00 0.00 3.85
171 172 2.663826 AGCAAGAGATTGGTCGACTC 57.336 50.000 16.46 5.28 0.00 3.36
172 173 2.037772 ACAAGCAAGAGATTGGTCGACT 59.962 45.455 16.46 0.00 45.12 4.18
173 174 2.417719 ACAAGCAAGAGATTGGTCGAC 58.582 47.619 7.13 7.13 45.12 4.20
174 175 2.839486 ACAAGCAAGAGATTGGTCGA 57.161 45.000 0.00 0.00 45.12 4.20
175 176 5.327091 CAATAACAAGCAAGAGATTGGTCG 58.673 41.667 0.00 0.00 35.97 4.79
176 177 5.415701 TCCAATAACAAGCAAGAGATTGGTC 59.584 40.000 15.25 0.00 35.97 4.02
177 178 5.324409 TCCAATAACAAGCAAGAGATTGGT 58.676 37.500 15.25 0.00 45.12 3.67
178 179 5.902613 TCCAATAACAAGCAAGAGATTGG 57.097 39.130 11.46 11.46 45.12 3.16
179 180 7.596494 TCTTTCCAATAACAAGCAAGAGATTG 58.404 34.615 0.00 0.00 46.22 2.67
180 181 7.449704 ACTCTTTCCAATAACAAGCAAGAGATT 59.550 33.333 11.91 0.00 38.61 2.40
181 182 6.944862 ACTCTTTCCAATAACAAGCAAGAGAT 59.055 34.615 11.91 0.00 38.61 2.75
182 183 6.299141 ACTCTTTCCAATAACAAGCAAGAGA 58.701 36.000 11.91 0.00 38.61 3.10
183 184 6.348868 GGACTCTTTCCAATAACAAGCAAGAG 60.349 42.308 0.00 0.00 45.10 2.85
184 185 5.473504 GGACTCTTTCCAATAACAAGCAAGA 59.526 40.000 0.00 0.00 45.10 3.02
185 186 5.703876 GGACTCTTTCCAATAACAAGCAAG 58.296 41.667 0.00 0.00 45.10 4.01
186 187 5.705609 GGACTCTTTCCAATAACAAGCAA 57.294 39.130 0.00 0.00 45.10 3.91
198 199 5.994668 GTGGAAGATATCATGGACTCTTTCC 59.005 44.000 5.32 6.57 46.13 3.13
199 200 6.481644 GTGTGGAAGATATCATGGACTCTTTC 59.518 42.308 5.32 0.00 0.00 2.62
200 201 6.352516 GTGTGGAAGATATCATGGACTCTTT 58.647 40.000 5.32 0.00 0.00 2.52
201 202 5.163258 GGTGTGGAAGATATCATGGACTCTT 60.163 44.000 5.32 0.00 0.00 2.85
202 203 4.346418 GGTGTGGAAGATATCATGGACTCT 59.654 45.833 5.32 0.00 0.00 3.24
203 204 4.346418 AGGTGTGGAAGATATCATGGACTC 59.654 45.833 5.32 0.00 0.00 3.36
204 205 4.302067 AGGTGTGGAAGATATCATGGACT 58.698 43.478 5.32 0.00 0.00 3.85
205 206 4.696479 AGGTGTGGAAGATATCATGGAC 57.304 45.455 5.32 0.00 0.00 4.02
206 207 5.715921 TCTAGGTGTGGAAGATATCATGGA 58.284 41.667 5.32 0.00 0.00 3.41
207 208 6.425210 TTCTAGGTGTGGAAGATATCATGG 57.575 41.667 5.32 0.00 0.00 3.66
210 211 9.832445 GTTTATTTCTAGGTGTGGAAGATATCA 57.168 33.333 5.32 0.00 0.00 2.15
211 212 9.832445 TGTTTATTTCTAGGTGTGGAAGATATC 57.168 33.333 0.00 0.00 0.00 1.63
213 214 9.667107 CTTGTTTATTTCTAGGTGTGGAAGATA 57.333 33.333 0.00 0.00 0.00 1.98
214 215 8.383175 TCTTGTTTATTTCTAGGTGTGGAAGAT 58.617 33.333 0.00 0.00 0.00 2.40
215 216 7.741785 TCTTGTTTATTTCTAGGTGTGGAAGA 58.258 34.615 0.00 0.00 0.00 2.87
216 217 7.979444 TCTTGTTTATTTCTAGGTGTGGAAG 57.021 36.000 0.00 0.00 0.00 3.46
217 218 8.934023 AATCTTGTTTATTTCTAGGTGTGGAA 57.066 30.769 0.00 0.00 0.00 3.53
218 219 8.934023 AAATCTTGTTTATTTCTAGGTGTGGA 57.066 30.769 0.00 0.00 0.00 4.02
235 236 9.959749 GAACTCTAAGATCGATCTAAATCTTGT 57.040 33.333 27.52 16.12 41.22 3.16
238 239 9.793259 AGAGAACTCTAAGATCGATCTAAATCT 57.207 33.333 27.52 21.76 38.35 2.40
286 287 8.296713 GCACAAAACCTATTCACTTATTCTCAA 58.703 33.333 0.00 0.00 0.00 3.02
287 288 7.446931 TGCACAAAACCTATTCACTTATTCTCA 59.553 33.333 0.00 0.00 0.00 3.27
288 289 7.816640 TGCACAAAACCTATTCACTTATTCTC 58.183 34.615 0.00 0.00 0.00 2.87
289 290 7.759489 TGCACAAAACCTATTCACTTATTCT 57.241 32.000 0.00 0.00 0.00 2.40
290 291 7.542130 CCTTGCACAAAACCTATTCACTTATTC 59.458 37.037 0.00 0.00 0.00 1.75
291 292 7.232534 TCCTTGCACAAAACCTATTCACTTATT 59.767 33.333 0.00 0.00 0.00 1.40
292 293 6.719370 TCCTTGCACAAAACCTATTCACTTAT 59.281 34.615 0.00 0.00 0.00 1.73
293 294 6.065374 TCCTTGCACAAAACCTATTCACTTA 58.935 36.000 0.00 0.00 0.00 2.24
294 295 4.892934 TCCTTGCACAAAACCTATTCACTT 59.107 37.500 0.00 0.00 0.00 3.16
295 296 4.469657 TCCTTGCACAAAACCTATTCACT 58.530 39.130 0.00 0.00 0.00 3.41
296 297 4.846779 TCCTTGCACAAAACCTATTCAC 57.153 40.909 0.00 0.00 0.00 3.18
297 298 5.009610 GTCTTCCTTGCACAAAACCTATTCA 59.990 40.000 0.00 0.00 0.00 2.57
298 299 5.461526 GTCTTCCTTGCACAAAACCTATTC 58.538 41.667 0.00 0.00 0.00 1.75
299 300 4.023193 CGTCTTCCTTGCACAAAACCTATT 60.023 41.667 0.00 0.00 0.00 1.73
300 301 3.502211 CGTCTTCCTTGCACAAAACCTAT 59.498 43.478 0.00 0.00 0.00 2.57
301 302 2.875933 CGTCTTCCTTGCACAAAACCTA 59.124 45.455 0.00 0.00 0.00 3.08
302 303 1.676006 CGTCTTCCTTGCACAAAACCT 59.324 47.619 0.00 0.00 0.00 3.50
303 304 1.404035 ACGTCTTCCTTGCACAAAACC 59.596 47.619 0.00 0.00 0.00 3.27
304 305 2.844122 ACGTCTTCCTTGCACAAAAC 57.156 45.000 0.00 0.00 0.00 2.43
305 306 5.163602 ACAATAACGTCTTCCTTGCACAAAA 60.164 36.000 0.00 0.00 0.00 2.44
306 307 4.336993 ACAATAACGTCTTCCTTGCACAAA 59.663 37.500 0.00 0.00 0.00 2.83
307 308 3.880490 ACAATAACGTCTTCCTTGCACAA 59.120 39.130 0.00 0.00 0.00 3.33
308 309 3.249799 CACAATAACGTCTTCCTTGCACA 59.750 43.478 0.00 0.00 0.00 4.57
309 310 3.496884 TCACAATAACGTCTTCCTTGCAC 59.503 43.478 0.00 0.00 0.00 4.57
310 311 3.734463 TCACAATAACGTCTTCCTTGCA 58.266 40.909 0.00 0.00 0.00 4.08
311 312 4.451096 TCTTCACAATAACGTCTTCCTTGC 59.549 41.667 0.00 0.00 0.00 4.01
312 313 5.389935 GCTCTTCACAATAACGTCTTCCTTG 60.390 44.000 0.00 0.00 0.00 3.61
313 314 4.691216 GCTCTTCACAATAACGTCTTCCTT 59.309 41.667 0.00 0.00 0.00 3.36
314 315 4.246458 GCTCTTCACAATAACGTCTTCCT 58.754 43.478 0.00 0.00 0.00 3.36
315 316 3.060895 CGCTCTTCACAATAACGTCTTCC 59.939 47.826 0.00 0.00 0.00 3.46
316 317 3.060895 CCGCTCTTCACAATAACGTCTTC 59.939 47.826 0.00 0.00 0.00 2.87
317 318 2.993899 CCGCTCTTCACAATAACGTCTT 59.006 45.455 0.00 0.00 0.00 3.01
318 319 2.607187 CCGCTCTTCACAATAACGTCT 58.393 47.619 0.00 0.00 0.00 4.18
319 320 1.060698 GCCGCTCTTCACAATAACGTC 59.939 52.381 0.00 0.00 0.00 4.34
320 321 1.076332 GCCGCTCTTCACAATAACGT 58.924 50.000 0.00 0.00 0.00 3.99
321 322 0.025001 CGCCGCTCTTCACAATAACG 59.975 55.000 0.00 0.00 0.00 3.18
322 323 0.247695 GCGCCGCTCTTCACAATAAC 60.248 55.000 0.00 0.00 0.00 1.89
323 324 0.672091 TGCGCCGCTCTTCACAATAA 60.672 50.000 11.67 0.00 0.00 1.40
324 325 1.079474 TGCGCCGCTCTTCACAATA 60.079 52.632 11.67 0.00 0.00 1.90
325 326 2.358615 TGCGCCGCTCTTCACAAT 60.359 55.556 11.67 0.00 0.00 2.71
326 327 3.043713 CTGCGCCGCTCTTCACAA 61.044 61.111 11.67 0.00 0.00 3.33
329 330 4.986645 TTGCTGCGCCGCTCTTCA 62.987 61.111 24.31 0.58 0.00 3.02
330 331 3.657835 CTTTGCTGCGCCGCTCTTC 62.658 63.158 24.31 0.00 0.00 2.87
331 332 3.730761 CTTTGCTGCGCCGCTCTT 61.731 61.111 24.31 0.00 0.00 2.85
340 341 2.025156 ATATGCGCGCTTTGCTGC 59.975 55.556 33.29 0.00 43.27 5.25
341 342 2.290789 GCATATGCGCGCTTTGCTG 61.291 57.895 31.51 23.45 43.27 4.41
342 343 1.996786 AAGCATATGCGCGCTTTGCT 61.997 50.000 34.03 34.03 46.04 3.91
343 344 1.587088 AAGCATATGCGCGCTTTGC 60.587 52.632 31.64 31.64 46.04 3.68
344 345 4.696078 AAGCATATGCGCGCTTTG 57.304 50.000 33.29 25.18 46.04 2.77
352 353 9.003658 ACATAAACCAATACTAGAAGCATATGC 57.996 33.333 20.36 20.36 42.49 3.14
355 356 9.982651 GAGACATAAACCAATACTAGAAGCATA 57.017 33.333 0.00 0.00 0.00 3.14
356 357 8.709308 AGAGACATAAACCAATACTAGAAGCAT 58.291 33.333 0.00 0.00 0.00 3.79
357 358 8.079211 AGAGACATAAACCAATACTAGAAGCA 57.921 34.615 0.00 0.00 0.00 3.91
361 362 8.512956 GCGATAGAGACATAAACCAATACTAGA 58.487 37.037 0.00 0.00 39.76 2.43
362 363 8.297426 TGCGATAGAGACATAAACCAATACTAG 58.703 37.037 0.00 0.00 39.76 2.57
363 364 8.173542 TGCGATAGAGACATAAACCAATACTA 57.826 34.615 0.00 0.00 39.76 1.82
364 365 7.050970 TGCGATAGAGACATAAACCAATACT 57.949 36.000 0.00 0.00 39.76 2.12
365 366 7.709269 TTGCGATAGAGACATAAACCAATAC 57.291 36.000 0.00 0.00 39.76 1.89
366 367 7.931407 ACATTGCGATAGAGACATAAACCAATA 59.069 33.333 0.00 0.00 39.76 1.90
367 368 6.767902 ACATTGCGATAGAGACATAAACCAAT 59.232 34.615 0.00 0.00 39.76 3.16
368 369 6.037062 CACATTGCGATAGAGACATAAACCAA 59.963 38.462 0.00 0.00 39.76 3.67
369 370 5.523552 CACATTGCGATAGAGACATAAACCA 59.476 40.000 0.00 0.00 39.76 3.67
370 371 5.523916 ACACATTGCGATAGAGACATAAACC 59.476 40.000 0.00 0.00 39.76 3.27
371 372 6.589830 ACACATTGCGATAGAGACATAAAC 57.410 37.500 0.00 0.00 39.76 2.01
372 373 6.923508 CCTACACATTGCGATAGAGACATAAA 59.076 38.462 0.00 0.00 39.76 1.40
373 374 6.447162 CCTACACATTGCGATAGAGACATAA 58.553 40.000 0.00 0.00 39.76 1.90
374 375 5.048013 CCCTACACATTGCGATAGAGACATA 60.048 44.000 0.00 0.00 39.76 2.29
375 376 4.262207 CCCTACACATTGCGATAGAGACAT 60.262 45.833 0.00 0.00 39.76 3.06
376 377 3.068165 CCCTACACATTGCGATAGAGACA 59.932 47.826 0.00 0.00 39.76 3.41
377 378 3.643763 CCCTACACATTGCGATAGAGAC 58.356 50.000 0.00 0.00 39.76 3.36
378 379 2.035961 GCCCTACACATTGCGATAGAGA 59.964 50.000 0.00 0.00 39.76 3.10
379 380 2.224042 TGCCCTACACATTGCGATAGAG 60.224 50.000 0.00 0.00 39.76 2.43
380 381 1.760029 TGCCCTACACATTGCGATAGA 59.240 47.619 0.00 0.00 39.76 1.98
381 382 2.238942 TGCCCTACACATTGCGATAG 57.761 50.000 0.00 0.00 0.00 2.08
382 383 2.093181 AGTTGCCCTACACATTGCGATA 60.093 45.455 0.00 0.00 0.00 2.92
383 384 1.094785 GTTGCCCTACACATTGCGAT 58.905 50.000 0.00 0.00 0.00 4.58
384 385 0.036164 AGTTGCCCTACACATTGCGA 59.964 50.000 0.00 0.00 0.00 5.10
385 386 1.732941 TAGTTGCCCTACACATTGCG 58.267 50.000 0.00 0.00 0.00 4.85
386 387 3.016736 ACATAGTTGCCCTACACATTGC 58.983 45.455 0.00 0.00 0.00 3.56
387 388 4.273480 GCTACATAGTTGCCCTACACATTG 59.727 45.833 0.00 0.00 0.00 2.82
388 389 4.164221 AGCTACATAGTTGCCCTACACATT 59.836 41.667 0.21 0.00 35.09 2.71
389 390 3.711704 AGCTACATAGTTGCCCTACACAT 59.288 43.478 0.21 0.00 35.09 3.21
390 391 3.104512 AGCTACATAGTTGCCCTACACA 58.895 45.455 0.21 0.00 35.09 3.72
391 392 3.821421 AGCTACATAGTTGCCCTACAC 57.179 47.619 0.21 0.00 35.09 2.90
392 393 3.640029 GGTAGCTACATAGTTGCCCTACA 59.360 47.826 24.75 0.00 35.09 2.74
393 394 3.896272 AGGTAGCTACATAGTTGCCCTAC 59.104 47.826 24.75 3.26 39.47 3.18
394 395 4.140994 AGAGGTAGCTACATAGTTGCCCTA 60.141 45.833 24.75 0.00 39.47 3.53
395 396 2.966516 GAGGTAGCTACATAGTTGCCCT 59.033 50.000 24.75 9.68 39.47 5.19
396 397 2.966516 AGAGGTAGCTACATAGTTGCCC 59.033 50.000 24.75 4.72 39.47 5.36
397 398 5.279056 CCTTAGAGGTAGCTACATAGTTGCC 60.279 48.000 24.75 5.46 39.06 4.52
398 399 5.279056 CCCTTAGAGGTAGCTACATAGTTGC 60.279 48.000 24.75 6.16 31.93 4.17
399 400 5.279056 GCCCTTAGAGGTAGCTACATAGTTG 60.279 48.000 24.75 10.41 31.93 3.16
400 401 4.833938 GCCCTTAGAGGTAGCTACATAGTT 59.166 45.833 24.75 10.02 31.93 2.24
401 402 4.409187 GCCCTTAGAGGTAGCTACATAGT 58.591 47.826 24.75 11.56 31.93 2.12
402 403 3.440872 CGCCCTTAGAGGTAGCTACATAG 59.559 52.174 24.75 12.34 31.93 2.23
403 404 3.181436 ACGCCCTTAGAGGTAGCTACATA 60.181 47.826 24.75 11.63 31.93 2.29
404 405 2.240279 CGCCCTTAGAGGTAGCTACAT 58.760 52.381 24.75 18.92 31.93 2.29
405 406 1.064166 ACGCCCTTAGAGGTAGCTACA 60.064 52.381 24.75 1.64 31.93 2.74
406 407 1.337387 CACGCCCTTAGAGGTAGCTAC 59.663 57.143 15.88 15.88 31.93 3.58
407 408 1.064166 ACACGCCCTTAGAGGTAGCTA 60.064 52.381 0.00 0.00 31.93 3.32
408 409 0.324460 ACACGCCCTTAGAGGTAGCT 60.324 55.000 0.00 0.00 31.93 3.32
409 410 0.535797 AACACGCCCTTAGAGGTAGC 59.464 55.000 0.00 0.00 31.93 3.58
410 411 2.618053 CAAACACGCCCTTAGAGGTAG 58.382 52.381 0.00 0.00 31.93 3.18
411 412 1.276989 CCAAACACGCCCTTAGAGGTA 59.723 52.381 0.00 0.00 31.93 3.08
412 413 0.036306 CCAAACACGCCCTTAGAGGT 59.964 55.000 0.00 0.00 31.93 3.85
413 414 0.036306 ACCAAACACGCCCTTAGAGG 59.964 55.000 0.00 0.00 34.30 3.69
414 415 1.535462 CAACCAAACACGCCCTTAGAG 59.465 52.381 0.00 0.00 0.00 2.43
415 416 1.600023 CAACCAAACACGCCCTTAGA 58.400 50.000 0.00 0.00 0.00 2.10
753 758 2.874648 ATCTGAAATCGCAGCCGCCA 62.875 55.000 0.00 0.00 35.86 5.69
795 812 4.760047 AGATCCGCCGCAAACGCT 62.760 61.111 0.00 0.00 38.22 5.07
893 912 4.029809 GGGGTGCTGCTTACCGGT 62.030 66.667 13.98 13.98 39.14 5.28
929 949 4.407945 CCTAGCTTAAAGGCCTAACCACTA 59.592 45.833 5.16 5.09 43.14 2.74
962 982 4.152402 CGATGGTTCGTTCAGTGAGAAATT 59.848 41.667 0.00 0.00 40.53 1.82
968 988 2.029380 ACATCGATGGTTCGTTCAGTGA 60.029 45.455 28.09 0.00 45.65 3.41
1005 1025 0.829990 TTATCAGCCTCATCCGTGCA 59.170 50.000 0.00 0.00 0.00 4.57
1041 1061 3.956199 CCCATGCCTGAATCACACTAATT 59.044 43.478 0.00 0.00 0.00 1.40
1116 1136 3.565449 CCCAGGGAAACAATGGACCATAA 60.565 47.826 7.59 0.00 40.26 1.90
1135 1155 0.417437 TGGATCCTCTCCTGTTCCCA 59.583 55.000 14.23 0.00 45.21 4.37
1245 1265 2.286732 AGGCCCCTGCTCCTGAAT 60.287 61.111 0.00 0.00 37.74 2.57
1411 1432 1.203313 TCCTCTAAGCTCCCCAACAGT 60.203 52.381 0.00 0.00 0.00 3.55
1440 1461 0.689080 TCTGGCCAGATGGTCTCCTC 60.689 60.000 32.00 0.00 41.34 3.71
1501 1522 7.012704 GTGTATATTGTCAATGCTCACCTTGAT 59.987 37.037 8.39 0.00 34.18 2.57
1606 1631 5.073554 TGACATGAATACCATCTATTGCCCT 59.926 40.000 0.00 0.00 31.94 5.19
1622 1647 0.478072 AACCCTGGCAGTGACATGAA 59.522 50.000 14.43 0.00 0.00 2.57
1638 1663 1.066787 GCAGACTGTGACCTAGGAACC 60.067 57.143 17.98 4.69 0.00 3.62
1670 1695 1.276421 GGCTTGTCTAGTGCTTCCTCA 59.724 52.381 0.00 0.00 0.00 3.86
1785 1810 1.683385 CCATCAGGTCGACTCATGCTA 59.317 52.381 16.46 0.00 0.00 3.49
1823 1848 3.584848 AGCATCTCCAAGGTAGAACTTGT 59.415 43.478 6.57 0.00 44.89 3.16
1863 1888 2.576191 CCTGAAGGGTGGAAGAATACCA 59.424 50.000 0.00 0.00 38.74 3.25
1901 1926 2.501723 TCCCTACCAGAGAACTCATTGC 59.498 50.000 4.64 0.00 0.00 3.56
1921 1946 3.006967 TCTTGTGCAGTCCTAGGAAAGTC 59.993 47.826 14.65 0.20 0.00 3.01
2007 2032 6.851836 TCTGATCCAGGATCTTAACCCTATTT 59.148 38.462 26.94 0.00 39.56 1.40
2014 2039 6.227298 TGACTTCTGATCCAGGATCTTAAC 57.773 41.667 26.94 14.85 39.56 2.01
2035 2060 2.771943 GAGTGGAGTATGGGTGGAATGA 59.228 50.000 0.00 0.00 0.00 2.57
2068 2093 5.710513 TGCAGAATACAACAAGCAAGAAT 57.289 34.783 0.00 0.00 0.00 2.40
2082 2107 6.100279 ACTGAAGGATCCAGTTATGCAGAATA 59.900 38.462 15.82 0.00 41.68 1.75
2129 2154 1.625818 GCTTGACCTCTTCCTCCTCAA 59.374 52.381 0.00 0.00 0.00 3.02
2146 2171 2.076863 GCTAACAACATCGTCAGGCTT 58.923 47.619 0.00 0.00 0.00 4.35
2242 2267 4.574674 TCCTGCATTGACCTCTGTTAAT 57.425 40.909 0.00 0.00 31.39 1.40
2286 2311 3.192541 TCTGTGCTTCTGTTGTTGCTA 57.807 42.857 0.00 0.00 0.00 3.49
2294 2319 2.968574 TCCTCTTCTTCTGTGCTTCTGT 59.031 45.455 0.00 0.00 0.00 3.41
2397 2456 8.299570 AGGTACAATCAAATGACAGTTCAAATC 58.700 33.333 0.00 0.00 34.61 2.17
2421 2480 4.494091 ACAAATGACAGTCCATCCTAGG 57.506 45.455 0.82 0.82 0.00 3.02
2422 2481 7.607991 AGTTAAACAAATGACAGTCCATCCTAG 59.392 37.037 0.00 0.00 0.00 3.02
2430 2489 7.042051 TGACAGCTAGTTAAACAAATGACAGTC 60.042 37.037 0.00 0.00 0.00 3.51
2454 2513 4.996758 CCACACACAATCTGAACATAGTGA 59.003 41.667 0.00 0.00 0.00 3.41
2520 2581 1.830477 ACATGGTGTTTGGTTGCAACT 59.170 42.857 27.64 2.88 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.