Multiple sequence alignment - TraesCS7B01G305800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G305800 chr7B 100.000 3809 0 0 1 3809 548166455 548162647 0.000000e+00 7035.0
1 TraesCS7B01G305800 chr7D 90.925 2347 159 30 1477 3809 515824050 515821744 0.000000e+00 3105.0
2 TraesCS7B01G305800 chr7D 94.737 1235 41 7 1 1213 515825486 515824254 0.000000e+00 1899.0
3 TraesCS7B01G305800 chr7D 93.333 60 4 0 1234 1293 150347142 150347201 5.240000e-14 89.8
4 TraesCS7B01G305800 chr7A 90.144 2425 150 44 1397 3798 589456559 589454201 0.000000e+00 3072.0
5 TraesCS7B01G305800 chr7A 94.597 1240 34 6 1 1218 589457879 589456651 0.000000e+00 1888.0
6 TraesCS7B01G305800 chr7A 89.041 73 6 2 1234 1305 79628019 79627948 5.240000e-14 89.8
7 TraesCS7B01G305800 chr1A 98.333 60 1 0 1234 1293 365069558 365069617 5.200000e-19 106.0
8 TraesCS7B01G305800 chr2B 96.610 59 2 0 1234 1292 249534191 249534133 8.710000e-17 99.0
9 TraesCS7B01G305800 chr3D 89.855 69 7 0 1234 1302 200817376 200817308 5.240000e-14 89.8
10 TraesCS7B01G305800 chr3D 89.855 69 7 0 1234 1302 408720716 408720648 5.240000e-14 89.8
11 TraesCS7B01G305800 chr2D 93.333 60 4 0 1234 1293 205184598 205184657 5.240000e-14 89.8
12 TraesCS7B01G305800 chr1D 93.333 60 4 0 1234 1293 156498577 156498636 5.240000e-14 89.8
13 TraesCS7B01G305800 chr1D 93.333 60 4 0 1234 1293 324990991 324991050 5.240000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G305800 chr7B 548162647 548166455 3808 True 7035 7035 100.0000 1 3809 1 chr7B.!!$R1 3808
1 TraesCS7B01G305800 chr7D 515821744 515825486 3742 True 2502 3105 92.8310 1 3809 2 chr7D.!!$R1 3808
2 TraesCS7B01G305800 chr7A 589454201 589457879 3678 True 2480 3072 92.3705 1 3798 2 chr7A.!!$R2 3797

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
854 864 0.037232 CGAGGTCTCTTGTCCCCAAC 60.037 60.0 0.00 0.00 0.00 3.77 F
1279 1307 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.0 13.64 4.95 46.06 4.20 F
1281 1309 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.0 13.64 0.00 46.06 3.85 F
1282 1310 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.00 46.06 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2028 2097 0.165944 CGCGCTTCACCCTAACAAAG 59.834 55.000 5.56 0.0 0.00 2.77 R
2661 2732 0.897863 TGTGCCTTTGTACATGGCCC 60.898 55.000 27.09 20.5 45.56 5.80 R
2696 2767 1.847818 TCTGGTTGTCACTTCGTTCG 58.152 50.000 0.00 0.0 0.00 3.95 R
3012 3084 2.224523 TGACTGGCGGAGATGTTCTTTT 60.225 45.455 0.00 0.0 0.00 2.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
115 116 4.691359 ACGTACCTGGCGGGGAGT 62.691 66.667 18.49 10.46 40.03 3.85
118 119 3.680196 TACCTGGCGGGGAGTCCT 61.680 66.667 18.49 0.00 40.03 3.85
620 621 4.772687 GGGGGCGGACGAGTTTCC 62.773 72.222 0.00 0.00 0.00 3.13
754 763 5.576774 GCCCATACAAGAAAACAGCAATTAC 59.423 40.000 0.00 0.00 0.00 1.89
760 769 3.135994 AGAAAACAGCAATTACGACGGT 58.864 40.909 0.00 0.00 0.00 4.83
854 864 0.037232 CGAGGTCTCTTGTCCCCAAC 60.037 60.000 0.00 0.00 0.00 3.77
961 987 4.200283 CTGTCGCCGAGGCTCTCC 62.200 72.222 13.50 2.06 39.32 3.71
975 1003 1.064017 GCTCTCCTCTCCTCTCCAGAA 60.064 57.143 0.00 0.00 0.00 3.02
977 1005 3.914771 CTCTCCTCTCCTCTCCAGAAAT 58.085 50.000 0.00 0.00 0.00 2.17
983 1011 4.323104 CCTCTCCTCTCCAGAAATCGTTTT 60.323 45.833 0.00 0.00 0.00 2.43
1164 1192 1.234615 CCACCGTTCTTGGCGTTCAT 61.235 55.000 0.00 0.00 0.00 2.57
1178 1206 1.876416 CGTTCATCAAGGTCGGTTGGT 60.876 52.381 0.00 0.00 0.00 3.67
1180 1208 1.890876 TCATCAAGGTCGGTTGGTTG 58.109 50.000 0.00 0.00 0.00 3.77
1187 1215 0.035739 GGTCGGTTGGTTGCTCCTTA 59.964 55.000 0.80 0.00 37.07 2.69
1189 1217 1.053424 TCGGTTGGTTGCTCCTTACT 58.947 50.000 0.80 0.00 37.07 2.24
1190 1218 1.418637 TCGGTTGGTTGCTCCTTACTT 59.581 47.619 0.80 0.00 37.07 2.24
1214 1242 7.946918 TTTTTGTTCGACGCTAATATGATTG 57.053 32.000 0.00 0.00 0.00 2.67
1218 1246 7.105494 TGTTCGACGCTAATATGATTGATTC 57.895 36.000 0.00 0.00 0.00 2.52
1219 1247 6.699642 TGTTCGACGCTAATATGATTGATTCA 59.300 34.615 0.00 0.00 39.12 2.57
1220 1248 6.690704 TCGACGCTAATATGATTGATTCAC 57.309 37.500 0.00 0.00 37.11 3.18
1221 1249 6.447162 TCGACGCTAATATGATTGATTCACT 58.553 36.000 0.00 0.00 37.11 3.41
1222 1250 6.363357 TCGACGCTAATATGATTGATTCACTG 59.637 38.462 0.00 0.00 37.11 3.66
1223 1251 6.400409 CGACGCTAATATGATTGATTCACTGG 60.400 42.308 0.00 0.00 37.11 4.00
1224 1252 5.180117 ACGCTAATATGATTGATTCACTGGC 59.820 40.000 0.00 0.00 37.11 4.85
1225 1253 5.391310 CGCTAATATGATTGATTCACTGGCC 60.391 44.000 0.00 0.00 37.11 5.36
1226 1254 5.474532 GCTAATATGATTGATTCACTGGCCA 59.525 40.000 4.71 4.71 37.11 5.36
1227 1255 6.016024 GCTAATATGATTGATTCACTGGCCAA 60.016 38.462 7.01 0.00 37.11 4.52
1228 1256 5.779529 ATATGATTGATTCACTGGCCAAC 57.220 39.130 7.01 0.00 37.11 3.77
1229 1257 3.159213 TGATTGATTCACTGGCCAACT 57.841 42.857 7.01 0.00 0.00 3.16
1230 1258 4.299586 TGATTGATTCACTGGCCAACTA 57.700 40.909 7.01 0.00 0.00 2.24
1231 1259 4.661222 TGATTGATTCACTGGCCAACTAA 58.339 39.130 7.01 0.70 0.00 2.24
1232 1260 4.701651 TGATTGATTCACTGGCCAACTAAG 59.298 41.667 7.01 0.00 0.00 2.18
1233 1261 2.436417 TGATTCACTGGCCAACTAAGC 58.564 47.619 7.01 4.33 0.00 3.09
1234 1262 2.224744 TGATTCACTGGCCAACTAAGCA 60.225 45.455 7.01 7.19 0.00 3.91
1235 1263 2.584835 TTCACTGGCCAACTAAGCAT 57.415 45.000 7.01 0.00 0.00 3.79
1236 1264 2.113860 TCACTGGCCAACTAAGCATC 57.886 50.000 7.01 0.00 0.00 3.91
1237 1265 1.098050 CACTGGCCAACTAAGCATCC 58.902 55.000 7.01 0.00 0.00 3.51
1238 1266 0.034089 ACTGGCCAACTAAGCATCCC 60.034 55.000 7.01 0.00 0.00 3.85
1239 1267 0.753111 CTGGCCAACTAAGCATCCCC 60.753 60.000 7.01 0.00 0.00 4.81
1240 1268 1.214305 TGGCCAACTAAGCATCCCCT 61.214 55.000 0.61 0.00 0.00 4.79
1241 1269 0.033109 GGCCAACTAAGCATCCCCTT 60.033 55.000 0.00 0.00 0.00 3.95
1242 1270 1.619704 GGCCAACTAAGCATCCCCTTT 60.620 52.381 0.00 0.00 0.00 3.11
1243 1271 2.179427 GCCAACTAAGCATCCCCTTTT 58.821 47.619 0.00 0.00 0.00 2.27
1244 1272 3.361786 GCCAACTAAGCATCCCCTTTTA 58.638 45.455 0.00 0.00 0.00 1.52
1245 1273 3.960755 GCCAACTAAGCATCCCCTTTTAT 59.039 43.478 0.00 0.00 0.00 1.40
1246 1274 4.038042 GCCAACTAAGCATCCCCTTTTATC 59.962 45.833 0.00 0.00 0.00 1.75
1247 1275 4.584743 CCAACTAAGCATCCCCTTTTATCC 59.415 45.833 0.00 0.00 0.00 2.59
1248 1276 5.200483 CAACTAAGCATCCCCTTTTATCCA 58.800 41.667 0.00 0.00 0.00 3.41
1249 1277 5.669798 ACTAAGCATCCCCTTTTATCCAT 57.330 39.130 0.00 0.00 0.00 3.41
1250 1278 6.030727 ACTAAGCATCCCCTTTTATCCATT 57.969 37.500 0.00 0.00 0.00 3.16
1251 1279 6.443832 ACTAAGCATCCCCTTTTATCCATTT 58.556 36.000 0.00 0.00 0.00 2.32
1252 1280 6.902974 ACTAAGCATCCCCTTTTATCCATTTT 59.097 34.615 0.00 0.00 0.00 1.82
1253 1281 5.619132 AGCATCCCCTTTTATCCATTTTG 57.381 39.130 0.00 0.00 0.00 2.44
1254 1282 5.279685 AGCATCCCCTTTTATCCATTTTGA 58.720 37.500 0.00 0.00 0.00 2.69
1255 1283 5.907079 AGCATCCCCTTTTATCCATTTTGAT 59.093 36.000 0.00 0.00 0.00 2.57
1256 1284 5.993441 GCATCCCCTTTTATCCATTTTGATG 59.007 40.000 0.00 0.00 0.00 3.07
1257 1285 6.183360 GCATCCCCTTTTATCCATTTTGATGA 60.183 38.462 0.00 0.00 0.00 2.92
1258 1286 6.790232 TCCCCTTTTATCCATTTTGATGAC 57.210 37.500 0.00 0.00 0.00 3.06
1259 1287 6.259893 TCCCCTTTTATCCATTTTGATGACA 58.740 36.000 0.00 0.00 0.00 3.58
1260 1288 6.728164 TCCCCTTTTATCCATTTTGATGACAA 59.272 34.615 0.00 0.00 0.00 3.18
1261 1289 7.043565 CCCCTTTTATCCATTTTGATGACAAG 58.956 38.462 0.00 0.00 37.32 3.16
1262 1290 7.310609 CCCCTTTTATCCATTTTGATGACAAGT 60.311 37.037 0.00 0.00 37.32 3.16
1263 1291 8.748412 CCCTTTTATCCATTTTGATGACAAGTA 58.252 33.333 0.00 0.00 37.32 2.24
1269 1297 6.851609 TCCATTTTGATGACAAGTATTTCCG 58.148 36.000 0.00 0.00 37.32 4.30
1270 1298 6.035843 CCATTTTGATGACAAGTATTTCCGG 58.964 40.000 0.00 0.00 37.32 5.14
1271 1299 6.127758 CCATTTTGATGACAAGTATTTCCGGA 60.128 38.462 0.00 0.00 37.32 5.14
1272 1300 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
1273 1301 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
1274 1302 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
1275 1303 1.894466 TGACAAGTATTTCCGGACGGA 59.106 47.619 1.83 9.76 43.52 4.69
1276 1304 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
1277 1305 1.206371 ACAAGTATTTCCGGACGGAGG 59.794 52.381 13.64 0.00 46.06 4.30
1278 1306 0.828677 AAGTATTTCCGGACGGAGGG 59.171 55.000 13.64 0.00 46.06 4.30
1279 1307 0.032813 AGTATTTCCGGACGGAGGGA 60.033 55.000 13.64 4.95 46.06 4.20
1280 1308 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
1281 1309 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1282 1310 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1283 1311 0.682209 TTTCCGGACGGAGGGAGTAG 60.682 60.000 13.64 0.00 46.06 2.57
1284 1312 1.856539 TTCCGGACGGAGGGAGTAGT 61.857 60.000 13.64 0.00 46.06 2.73
1300 1328 5.001232 GGAGTAGTTGTTGGTTATGCTCAA 58.999 41.667 0.00 0.00 0.00 3.02
1301 1329 5.472137 GGAGTAGTTGTTGGTTATGCTCAAA 59.528 40.000 0.00 0.00 0.00 2.69
1319 1347 5.564259 GCTCAAAGCCCAGCTAATATGATTG 60.564 44.000 0.00 0.00 38.25 2.67
1321 1349 6.309357 TCAAAGCCCAGCTAATATGATTGAT 58.691 36.000 0.00 0.00 38.25 2.57
1325 1353 8.890410 AAGCCCAGCTAATATGATTGATTAAT 57.110 30.769 0.00 0.00 38.25 1.40
1372 1400 7.755591 AGTATAGTGCAAAATGACATGTCTTG 58.244 34.615 25.55 21.10 0.00 3.02
1373 1401 4.924305 AGTGCAAAATGACATGTCTTGT 57.076 36.364 25.55 12.73 42.79 3.16
1403 1431 6.603237 AAAAATGTTTTGTTTCTGCTAGCC 57.397 33.333 13.29 0.00 0.00 3.93
1408 1436 2.185004 TTGTTTCTGCTAGCCCTCAC 57.815 50.000 13.29 4.80 0.00 3.51
1419 1447 1.247567 AGCCCTCACATCCAAAAACG 58.752 50.000 0.00 0.00 0.00 3.60
1434 1462 8.550376 CATCCAAAAACGTTCATTTGAAAGAAT 58.450 29.630 21.42 8.31 38.50 2.40
1457 1488 6.554334 TCTACTTTGTTGAGAATTTTCCGG 57.446 37.500 0.00 0.00 0.00 5.14
1465 1496 8.624367 TTGTTGAGAATTTTCCGGTAGAAATA 57.376 30.769 0.00 0.00 43.93 1.40
1530 1586 1.266718 GCAGCAAATCGAGTTGTGGAA 59.733 47.619 24.66 0.00 0.00 3.53
1563 1619 2.581354 CGTGCCAGGGAGAAGGAG 59.419 66.667 0.00 0.00 0.00 3.69
1659 1715 0.689623 CAAGAGACCAGAGCCCTGTT 59.310 55.000 0.00 0.00 38.74 3.16
1704 1766 1.093972 ATGGCGCATCATTTTCGTCA 58.906 45.000 10.83 0.00 42.13 4.35
1716 1778 4.824537 TCATTTTCGTCAAGGGATTCACAA 59.175 37.500 0.00 0.00 0.00 3.33
1717 1779 4.829064 TTTTCGTCAAGGGATTCACAAG 57.171 40.909 0.00 0.00 0.00 3.16
1739 1801 0.828677 AGTTCTTATTCGGACCGGGG 59.171 55.000 15.25 0.00 0.00 5.73
1797 1859 2.559668 TCGATCAAGGTCAGTTACGGTT 59.440 45.455 0.00 0.00 0.00 4.44
1799 1861 3.744426 CGATCAAGGTCAGTTACGGTTTT 59.256 43.478 0.00 0.00 0.00 2.43
1800 1862 4.377022 CGATCAAGGTCAGTTACGGTTTTG 60.377 45.833 0.00 0.00 0.00 2.44
1801 1863 4.139859 TCAAGGTCAGTTACGGTTTTGA 57.860 40.909 0.00 0.00 0.00 2.69
1802 1864 4.710324 TCAAGGTCAGTTACGGTTTTGAT 58.290 39.130 0.00 0.00 0.00 2.57
1805 1867 4.710324 AGGTCAGTTACGGTTTTGATCAA 58.290 39.130 3.38 3.38 0.00 2.57
1813 1875 3.765026 ACGGTTTTGATCAACAACACAC 58.235 40.909 23.06 12.53 39.90 3.82
1824 1886 3.631686 TCAACAACACACTGGGAGAAATG 59.368 43.478 0.00 0.00 0.00 2.32
1830 1892 6.721208 ACAACACACTGGGAGAAATGAAATAT 59.279 34.615 0.00 0.00 0.00 1.28
1836 1898 7.890127 ACACTGGGAGAAATGAAATATTGAGAA 59.110 33.333 0.00 0.00 0.00 2.87
1885 1947 8.834749 AGATGTGATCTTTCTATGATGTCATG 57.165 34.615 5.78 0.00 35.76 3.07
1886 1948 8.430431 AGATGTGATCTTTCTATGATGTCATGT 58.570 33.333 5.78 0.00 35.76 3.21
1887 1949 7.781548 TGTGATCTTTCTATGATGTCATGTG 57.218 36.000 5.78 0.00 37.15 3.21
1980 2042 8.621286 AGTTAGCCTATACATTTGTATTTGCAC 58.379 33.333 18.37 12.33 41.18 4.57
2001 2063 3.586174 ACATGCATAGGCCATCTATCTGT 59.414 43.478 5.01 0.00 36.59 3.41
2016 2085 8.834465 CCATCTATCTGTTCCAATTTTCACTAG 58.166 37.037 0.00 0.00 0.00 2.57
2021 2090 5.465390 TCTGTTCCAATTTTCACTAGACACG 59.535 40.000 0.00 0.00 0.00 4.49
2024 2093 3.745975 TCCAATTTTCACTAGACACGCAG 59.254 43.478 0.00 0.00 0.00 5.18
2028 2097 4.789095 TTTTCACTAGACACGCAGTTTC 57.211 40.909 0.00 0.00 41.61 2.78
2049 2118 2.818274 GTTAGGGTGAAGCGCGGG 60.818 66.667 8.83 0.00 34.93 6.13
2118 2187 0.179073 CTCCATCCGGCGTGAAAGAT 60.179 55.000 6.01 0.00 0.00 2.40
2162 2231 3.131396 GAGTGAAAGAAGAACGGAAGCA 58.869 45.455 0.00 0.00 0.00 3.91
2379 2449 6.884295 TGATTAATCGGAATGTGGAGAAAAGT 59.116 34.615 10.80 0.00 0.00 2.66
2398 2468 1.068541 GTTTCACCCTTTGCCGCTAAG 60.069 52.381 7.51 7.51 0.00 2.18
2400 2470 0.978151 TCACCCTTTGCCGCTAAGTA 59.022 50.000 12.61 0.00 0.00 2.24
2608 2678 5.788533 TCCCTTCTAAACAATCTACCCTTCA 59.211 40.000 0.00 0.00 0.00 3.02
2661 2732 1.265095 GCATACAGAATGGGATGCGTG 59.735 52.381 0.00 0.00 45.32 5.34
2696 2767 5.134202 AGGCACAAGCAGTAAAATTTACC 57.866 39.130 11.83 0.00 44.61 2.85
2774 2845 6.683974 ACATAACAGTTCATACTCATTGGC 57.316 37.500 0.00 0.00 30.26 4.52
2796 2867 3.898517 TCTCTTACTACGCCATGATCG 57.101 47.619 0.00 0.00 0.00 3.69
2907 2978 2.972713 ACTGCAGAAGAACAGAAGGGTA 59.027 45.455 23.35 0.00 37.35 3.69
2970 3042 5.924475 AAATGTAGAACGAAGGTCAGTTG 57.076 39.130 0.00 0.00 0.00 3.16
3012 3084 4.362677 AGAGAGGTTCAGGCTACCAATTA 58.637 43.478 9.08 0.00 38.16 1.40
3025 3097 6.603599 AGGCTACCAATTAAAAGAACATCTCC 59.396 38.462 0.00 0.00 0.00 3.71
3082 3154 3.746940 TCCCAGTGTTTTAAGGCAGTAC 58.253 45.455 0.00 0.00 0.00 2.73
3083 3155 3.393278 TCCCAGTGTTTTAAGGCAGTACT 59.607 43.478 0.00 0.00 0.00 2.73
3084 3156 3.502211 CCCAGTGTTTTAAGGCAGTACTG 59.498 47.826 18.93 18.93 35.17 2.74
3158 3230 5.893824 TCTGATCATCCTAGACAGCACTAAA 59.106 40.000 0.00 0.00 0.00 1.85
3457 3535 0.618981 TCTCTACCCTCAGCTCGTCA 59.381 55.000 0.00 0.00 0.00 4.35
3465 3543 2.031012 CAGCTCGTCAGGCAACCA 59.969 61.111 0.00 0.00 37.17 3.67
3548 3637 8.744652 TGGTAAAGATGTTTAAGAGAGAGAGAG 58.255 37.037 0.00 0.00 29.74 3.20
3549 3638 8.962679 GGTAAAGATGTTTAAGAGAGAGAGAGA 58.037 37.037 0.00 0.00 29.74 3.10
3551 3640 8.877864 AAAGATGTTTAAGAGAGAGAGAGAGA 57.122 34.615 0.00 0.00 0.00 3.10
3552 3641 8.511604 AAGATGTTTAAGAGAGAGAGAGAGAG 57.488 38.462 0.00 0.00 0.00 3.20
3553 3642 7.861629 AGATGTTTAAGAGAGAGAGAGAGAGA 58.138 38.462 0.00 0.00 0.00 3.10
3554 3643 7.989741 AGATGTTTAAGAGAGAGAGAGAGAGAG 59.010 40.741 0.00 0.00 0.00 3.20
3555 3644 7.252612 TGTTTAAGAGAGAGAGAGAGAGAGA 57.747 40.000 0.00 0.00 0.00 3.10
3556 3645 7.861629 TGTTTAAGAGAGAGAGAGAGAGAGAT 58.138 38.462 0.00 0.00 0.00 2.75
3557 3646 7.770433 TGTTTAAGAGAGAGAGAGAGAGAGATG 59.230 40.741 0.00 0.00 0.00 2.90
3597 3686 4.452114 GGTGCATGAAAGGACAAATTTTCC 59.548 41.667 0.00 9.93 33.43 3.13
3603 3692 7.603784 GCATGAAAGGACAAATTTTCCAGTAAT 59.396 33.333 16.65 6.85 35.33 1.89
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 1.935327 GAGTTCGACACGGAGGAGGG 61.935 65.000 0.00 0.00 0.00 4.30
115 116 1.377725 GTCCGTCTCGTACCCAGGA 60.378 63.158 0.00 0.00 0.00 3.86
118 119 1.377725 GGAGTCCGTCTCGTACCCA 60.378 63.158 0.00 0.00 43.60 4.51
538 539 3.458163 CTGGCCTTCCCGACGCTA 61.458 66.667 3.32 0.00 35.87 4.26
854 864 0.177141 TCTAGAAATTCCGGTGGCGG 59.823 55.000 0.00 0.00 0.00 6.13
957 967 3.686978 CGATTTCTGGAGAGGAGAGGAGA 60.687 52.174 0.00 0.00 0.00 3.71
961 987 4.464069 AAACGATTTCTGGAGAGGAGAG 57.536 45.455 0.00 0.00 0.00 3.20
962 988 4.322801 GGAAAACGATTTCTGGAGAGGAGA 60.323 45.833 16.44 0.00 43.65 3.71
975 1003 0.953960 AGCCGCGAAGGAAAACGATT 60.954 50.000 8.23 0.00 45.00 3.34
977 1005 2.029964 AGCCGCGAAGGAAAACGA 59.970 55.556 8.23 0.00 45.00 3.85
1070 1098 1.463214 TGCACCCCTTCCTTCTCCA 60.463 57.895 0.00 0.00 0.00 3.86
1126 1154 2.263540 GGCAAGGAACCGCGAGTA 59.736 61.111 8.23 0.00 0.00 2.59
1164 1192 0.534203 GAGCAACCAACCGACCTTGA 60.534 55.000 0.00 0.00 0.00 3.02
1190 1218 7.744059 TCAATCATATTAGCGTCGAACAAAAA 58.256 30.769 0.00 0.00 0.00 1.94
1201 1229 5.391310 GGCCAGTGAATCAATCATATTAGCG 60.391 44.000 0.00 0.00 40.97 4.26
1214 1242 2.436417 TGCTTAGTTGGCCAGTGAATC 58.564 47.619 5.11 0.00 0.00 2.52
1218 1246 1.098050 GGATGCTTAGTTGGCCAGTG 58.902 55.000 5.11 0.00 0.00 3.66
1219 1247 0.034089 GGGATGCTTAGTTGGCCAGT 60.034 55.000 5.11 0.00 0.00 4.00
1220 1248 0.753111 GGGGATGCTTAGTTGGCCAG 60.753 60.000 5.11 0.00 0.00 4.85
1221 1249 1.214305 AGGGGATGCTTAGTTGGCCA 61.214 55.000 0.00 0.00 0.00 5.36
1222 1250 0.033109 AAGGGGATGCTTAGTTGGCC 60.033 55.000 0.00 0.00 0.00 5.36
1223 1251 1.852633 AAAGGGGATGCTTAGTTGGC 58.147 50.000 0.00 0.00 0.00 4.52
1224 1252 4.584743 GGATAAAAGGGGATGCTTAGTTGG 59.415 45.833 0.00 0.00 0.00 3.77
1225 1253 5.200483 TGGATAAAAGGGGATGCTTAGTTG 58.800 41.667 0.00 0.00 0.00 3.16
1226 1254 5.466127 TGGATAAAAGGGGATGCTTAGTT 57.534 39.130 0.00 0.00 0.00 2.24
1227 1255 5.669798 ATGGATAAAAGGGGATGCTTAGT 57.330 39.130 0.00 0.00 0.00 2.24
1228 1256 6.983906 AAATGGATAAAAGGGGATGCTTAG 57.016 37.500 0.00 0.00 0.00 2.18
1229 1257 6.900186 TCAAAATGGATAAAAGGGGATGCTTA 59.100 34.615 0.00 0.00 0.00 3.09
1230 1258 5.725822 TCAAAATGGATAAAAGGGGATGCTT 59.274 36.000 0.00 0.00 0.00 3.91
1231 1259 5.279685 TCAAAATGGATAAAAGGGGATGCT 58.720 37.500 0.00 0.00 0.00 3.79
1232 1260 5.612725 TCAAAATGGATAAAAGGGGATGC 57.387 39.130 0.00 0.00 0.00 3.91
1233 1261 7.147689 TGTCATCAAAATGGATAAAAGGGGATG 60.148 37.037 0.00 0.00 33.42 3.51
1234 1262 6.902416 TGTCATCAAAATGGATAAAAGGGGAT 59.098 34.615 0.00 0.00 33.42 3.85
1235 1263 6.259893 TGTCATCAAAATGGATAAAAGGGGA 58.740 36.000 0.00 0.00 33.42 4.81
1236 1264 6.543430 TGTCATCAAAATGGATAAAAGGGG 57.457 37.500 0.00 0.00 33.42 4.79
1237 1265 7.614494 ACTTGTCATCAAAATGGATAAAAGGG 58.386 34.615 0.00 0.00 33.42 3.95
1243 1271 8.620416 CGGAAATACTTGTCATCAAAATGGATA 58.380 33.333 0.00 0.00 33.42 2.59
1244 1272 7.416664 CCGGAAATACTTGTCATCAAAATGGAT 60.417 37.037 0.00 0.00 33.42 3.41
1245 1273 6.127758 CCGGAAATACTTGTCATCAAAATGGA 60.128 38.462 0.00 0.00 33.42 3.41
1246 1274 6.035843 CCGGAAATACTTGTCATCAAAATGG 58.964 40.000 0.00 0.00 33.42 3.16
1247 1275 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
1248 1276 6.403200 CGTCCGGAAATACTTGTCATCAAAAT 60.403 38.462 5.23 0.00 32.87 1.82
1249 1277 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
1250 1278 4.390603 CGTCCGGAAATACTTGTCATCAAA 59.609 41.667 5.23 0.00 32.87 2.69
1251 1279 3.930229 CGTCCGGAAATACTTGTCATCAA 59.070 43.478 5.23 0.00 0.00 2.57
1252 1280 3.517602 CGTCCGGAAATACTTGTCATCA 58.482 45.455 5.23 0.00 0.00 3.07
1253 1281 2.864343 CCGTCCGGAAATACTTGTCATC 59.136 50.000 5.23 0.00 37.50 2.92
1254 1282 2.498481 TCCGTCCGGAAATACTTGTCAT 59.502 45.455 5.23 0.00 42.05 3.06
1255 1283 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
1256 1284 2.537401 CTCCGTCCGGAAATACTTGTC 58.463 52.381 5.23 0.00 44.66 3.18
1257 1285 1.206371 CCTCCGTCCGGAAATACTTGT 59.794 52.381 5.23 0.00 44.66 3.16
1258 1286 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
1259 1287 0.828677 CCCTCCGTCCGGAAATACTT 59.171 55.000 5.23 0.00 44.66 2.24
1260 1288 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
1261 1289 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
1262 1290 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1263 1291 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1264 1292 0.682209 CTACTCCCTCCGTCCGGAAA 60.682 60.000 5.23 0.00 44.66 3.13
1265 1293 1.077212 CTACTCCCTCCGTCCGGAA 60.077 63.158 5.23 0.00 44.66 4.30
1266 1294 1.856539 AACTACTCCCTCCGTCCGGA 61.857 60.000 0.00 0.00 42.90 5.14
1267 1295 1.379576 AACTACTCCCTCCGTCCGG 60.380 63.158 0.00 0.00 0.00 5.14
1268 1296 0.964358 ACAACTACTCCCTCCGTCCG 60.964 60.000 0.00 0.00 0.00 4.79
1269 1297 1.067071 CAACAACTACTCCCTCCGTCC 60.067 57.143 0.00 0.00 0.00 4.79
1270 1298 1.067071 CCAACAACTACTCCCTCCGTC 60.067 57.143 0.00 0.00 0.00 4.79
1271 1299 0.974383 CCAACAACTACTCCCTCCGT 59.026 55.000 0.00 0.00 0.00 4.69
1272 1300 0.974383 ACCAACAACTACTCCCTCCG 59.026 55.000 0.00 0.00 0.00 4.63
1273 1301 4.514401 CATAACCAACAACTACTCCCTCC 58.486 47.826 0.00 0.00 0.00 4.30
1274 1302 3.939592 GCATAACCAACAACTACTCCCTC 59.060 47.826 0.00 0.00 0.00 4.30
1275 1303 3.587506 AGCATAACCAACAACTACTCCCT 59.412 43.478 0.00 0.00 0.00 4.20
1276 1304 3.939592 GAGCATAACCAACAACTACTCCC 59.060 47.826 0.00 0.00 0.00 4.30
1277 1305 4.575885 TGAGCATAACCAACAACTACTCC 58.424 43.478 0.00 0.00 0.00 3.85
1278 1306 6.554334 TTTGAGCATAACCAACAACTACTC 57.446 37.500 0.00 0.00 0.00 2.59
1279 1307 5.048713 GCTTTGAGCATAACCAACAACTACT 60.049 40.000 0.00 0.00 41.89 2.57
1280 1308 5.154222 GCTTTGAGCATAACCAACAACTAC 58.846 41.667 0.00 0.00 41.89 2.73
1281 1309 4.217550 GGCTTTGAGCATAACCAACAACTA 59.782 41.667 2.04 0.00 44.75 2.24
1282 1310 3.005791 GGCTTTGAGCATAACCAACAACT 59.994 43.478 2.04 0.00 44.75 3.16
1283 1311 3.317150 GGCTTTGAGCATAACCAACAAC 58.683 45.455 2.04 0.00 44.75 3.32
1284 1312 2.298729 GGGCTTTGAGCATAACCAACAA 59.701 45.455 2.04 0.00 44.75 2.83
1300 1328 8.890410 ATTAATCAATCATATTAGCTGGGCTT 57.110 30.769 0.00 0.00 40.44 4.35
1301 1329 8.890410 AATTAATCAATCATATTAGCTGGGCT 57.110 30.769 0.00 0.00 43.41 5.19
1331 1359 7.277760 TGCACTATACTCGTAACTTCGTAGTAA 59.722 37.037 0.00 0.00 33.17 2.24
1332 1360 6.756542 TGCACTATACTCGTAACTTCGTAGTA 59.243 38.462 0.00 0.00 33.17 1.82
1334 1362 6.040962 TGCACTATACTCGTAACTTCGTAG 57.959 41.667 0.00 0.00 0.00 3.51
1336 1364 4.952262 TGCACTATACTCGTAACTTCGT 57.048 40.909 0.00 0.00 0.00 3.85
1337 1365 6.621737 TTTTGCACTATACTCGTAACTTCG 57.378 37.500 0.00 0.00 0.00 3.79
1338 1366 8.108782 GTCATTTTGCACTATACTCGTAACTTC 58.891 37.037 0.00 0.00 0.00 3.01
1339 1367 7.601130 TGTCATTTTGCACTATACTCGTAACTT 59.399 33.333 0.00 0.00 0.00 2.66
1340 1368 7.094631 TGTCATTTTGCACTATACTCGTAACT 58.905 34.615 0.00 0.00 0.00 2.24
1341 1369 7.285783 TGTCATTTTGCACTATACTCGTAAC 57.714 36.000 0.00 0.00 0.00 2.50
1342 1370 7.547722 ACATGTCATTTTGCACTATACTCGTAA 59.452 33.333 0.00 0.00 0.00 3.18
1343 1371 7.039270 ACATGTCATTTTGCACTATACTCGTA 58.961 34.615 0.00 0.00 0.00 3.43
1344 1372 5.874810 ACATGTCATTTTGCACTATACTCGT 59.125 36.000 0.00 0.00 0.00 4.18
1345 1373 6.256539 AGACATGTCATTTTGCACTATACTCG 59.743 38.462 27.02 0.00 0.00 4.18
1346 1374 7.545362 AGACATGTCATTTTGCACTATACTC 57.455 36.000 27.02 0.00 0.00 2.59
1347 1375 7.391554 ACAAGACATGTCATTTTGCACTATACT 59.608 33.333 27.02 2.94 37.96 2.12
1348 1376 7.530010 ACAAGACATGTCATTTTGCACTATAC 58.470 34.615 27.02 0.00 37.96 1.47
1353 1381 5.762045 ACTACAAGACATGTCATTTTGCAC 58.238 37.500 27.02 0.00 42.70 4.57
1386 1414 2.884639 TGAGGGCTAGCAGAAACAAAAC 59.115 45.455 18.24 0.00 0.00 2.43
1387 1415 2.884639 GTGAGGGCTAGCAGAAACAAAA 59.115 45.455 18.24 0.00 0.00 2.44
1388 1416 2.158682 TGTGAGGGCTAGCAGAAACAAA 60.159 45.455 18.24 1.46 0.00 2.83
1389 1417 1.419762 TGTGAGGGCTAGCAGAAACAA 59.580 47.619 18.24 0.00 0.00 2.83
1390 1418 1.055849 TGTGAGGGCTAGCAGAAACA 58.944 50.000 18.24 12.28 0.00 2.83
1391 1419 2.284190 GATGTGAGGGCTAGCAGAAAC 58.716 52.381 18.24 9.75 0.00 2.78
1392 1420 1.210478 GGATGTGAGGGCTAGCAGAAA 59.790 52.381 18.24 0.00 0.00 2.52
1393 1421 0.833287 GGATGTGAGGGCTAGCAGAA 59.167 55.000 18.24 0.00 0.00 3.02
1394 1422 0.325577 TGGATGTGAGGGCTAGCAGA 60.326 55.000 18.24 0.00 0.00 4.26
1395 1423 0.543277 TTGGATGTGAGGGCTAGCAG 59.457 55.000 18.24 0.00 0.00 4.24
1402 1430 2.621055 TGAACGTTTTTGGATGTGAGGG 59.379 45.455 0.46 0.00 0.00 4.30
1403 1431 3.980646 TGAACGTTTTTGGATGTGAGG 57.019 42.857 0.46 0.00 0.00 3.86
1408 1436 7.462109 TCTTTCAAATGAACGTTTTTGGATG 57.538 32.000 19.94 15.32 34.38 3.51
1434 1462 6.059484 ACCGGAAAATTCTCAACAAAGTAGA 58.941 36.000 9.46 0.00 0.00 2.59
1450 1481 6.297582 TCCAAACTGTATTTCTACCGGAAAA 58.702 36.000 9.46 6.14 45.56 2.29
1453 1484 5.012354 AGTTCCAAACTGTATTTCTACCGGA 59.988 40.000 9.46 0.00 41.01 5.14
1502 1558 2.618241 ACTCGATTTGCTGCAGACAAAA 59.382 40.909 27.89 20.12 40.19 2.44
1530 1586 2.009774 GCACGCCACATCTCATTAACT 58.990 47.619 0.00 0.00 0.00 2.24
1563 1619 2.119801 TCTTCAATTCCAGCTCCAGC 57.880 50.000 0.00 0.00 42.49 4.85
1577 1633 5.010922 CCATTGGTTCTGGTTTTCATCTTCA 59.989 40.000 0.00 0.00 0.00 3.02
1578 1634 5.011023 ACCATTGGTTCTGGTTTTCATCTTC 59.989 40.000 1.37 0.00 44.67 2.87
1659 1715 1.819288 CTGTCTCGCTGGGTCTTAGAA 59.181 52.381 0.00 0.00 0.00 2.10
1704 1766 2.108952 AGAACTGCCTTGTGAATCCCTT 59.891 45.455 0.00 0.00 0.00 3.95
1716 1778 1.134788 CGGTCCGAATAAGAACTGCCT 60.135 52.381 4.91 0.00 0.00 4.75
1717 1779 1.287425 CGGTCCGAATAAGAACTGCC 58.713 55.000 4.91 0.00 0.00 4.85
1739 1801 1.557269 ATCATCGCCTAGCCCATCCC 61.557 60.000 0.00 0.00 0.00 3.85
1797 1859 3.625853 TCCCAGTGTGTTGTTGATCAAA 58.374 40.909 10.35 0.00 37.81 2.69
1799 1861 2.437651 TCTCCCAGTGTGTTGTTGATCA 59.562 45.455 0.00 0.00 0.00 2.92
1800 1862 3.126001 TCTCCCAGTGTGTTGTTGATC 57.874 47.619 0.00 0.00 0.00 2.92
1801 1863 3.576078 TTCTCCCAGTGTGTTGTTGAT 57.424 42.857 0.00 0.00 0.00 2.57
1802 1864 3.358111 TTTCTCCCAGTGTGTTGTTGA 57.642 42.857 0.00 0.00 0.00 3.18
1805 1867 3.576078 TCATTTCTCCCAGTGTGTTGT 57.424 42.857 0.00 0.00 0.00 3.32
1885 1947 8.528917 TGATTAGTCACATGTAAAGTACACAC 57.471 34.615 0.00 0.00 42.23 3.82
1954 2016 8.621286 GTGCAAATACAAATGTATAGGCTAACT 58.379 33.333 20.51 0.00 40.10 2.24
1980 2042 4.217836 ACAGATAGATGGCCTATGCATG 57.782 45.455 10.16 0.00 38.17 4.06
2001 2063 4.130857 TGCGTGTCTAGTGAAAATTGGAA 58.869 39.130 0.00 0.00 0.00 3.53
2016 2085 3.303791 CCCTAACAAAGAAACTGCGTGTC 60.304 47.826 0.00 0.00 0.00 3.67
2021 2090 4.793028 GCTTCACCCTAACAAAGAAACTGC 60.793 45.833 0.00 0.00 0.00 4.40
2024 2093 3.852205 GCGCTTCACCCTAACAAAGAAAC 60.852 47.826 0.00 0.00 0.00 2.78
2028 2097 0.165944 CGCGCTTCACCCTAACAAAG 59.834 55.000 5.56 0.00 0.00 2.77
2049 2118 0.178068 TAGAACCAATGGCTCCTCGC 59.822 55.000 0.00 0.00 38.13 5.03
2109 2178 6.019801 CCGGACTTACTGAATTATCTTTCACG 60.020 42.308 0.00 0.00 32.39 4.35
2111 2180 7.177832 TCCGGACTTACTGAATTATCTTTCA 57.822 36.000 0.00 0.00 34.55 2.69
2113 2182 6.483640 GCATCCGGACTTACTGAATTATCTTT 59.516 38.462 6.12 0.00 0.00 2.52
2118 2187 4.439057 GTGCATCCGGACTTACTGAATTA 58.561 43.478 6.12 0.00 0.00 1.40
2162 2231 2.816411 TCTCTGGACCATAAACTCGGT 58.184 47.619 0.00 0.00 38.56 4.69
2196 2265 6.651643 GCTCCTCGTCTGAGTATTTAGATCTA 59.348 42.308 0.00 0.00 40.85 1.98
2207 2276 1.040339 GGATGGCTCCTCGTCTGAGT 61.040 60.000 0.00 0.00 40.85 3.41
2268 2337 2.755655 CTCCTTTCTCTCTCGGTTGCTA 59.244 50.000 0.00 0.00 0.00 3.49
2379 2449 1.243902 CTTAGCGGCAAAGGGTGAAA 58.756 50.000 1.45 0.00 0.00 2.69
2400 2470 8.862325 TGATACAATAATTTCAACAGGTCACT 57.138 30.769 0.00 0.00 0.00 3.41
2661 2732 0.897863 TGTGCCTTTGTACATGGCCC 60.898 55.000 27.09 20.50 45.56 5.80
2681 2752 5.467735 ACTTCGTTCGGTAAATTTTACTGCT 59.532 36.000 19.14 0.00 0.00 4.24
2696 2767 1.847818 TCTGGTTGTCACTTCGTTCG 58.152 50.000 0.00 0.00 0.00 3.95
2774 2845 4.162072 CGATCATGGCGTAGTAAGAGATG 58.838 47.826 0.00 0.00 0.00 2.90
2796 2867 2.485814 GCTTCAGTTTCATCTGGTGGAC 59.514 50.000 0.00 0.00 36.25 4.02
2907 2978 5.013183 ACTGAATTTCTACTGCCAGTAACCT 59.987 40.000 5.98 0.00 33.65 3.50
2951 3023 3.635373 ACTCAACTGACCTTCGTTCTACA 59.365 43.478 0.00 0.00 0.00 2.74
2953 3025 4.931661 AACTCAACTGACCTTCGTTCTA 57.068 40.909 0.00 0.00 0.00 2.10
2955 3027 3.869246 TCAAACTCAACTGACCTTCGTTC 59.131 43.478 0.00 0.00 0.00 3.95
2956 3028 3.869065 TCAAACTCAACTGACCTTCGTT 58.131 40.909 0.00 0.00 0.00 3.85
2957 3029 3.132289 TCTCAAACTCAACTGACCTTCGT 59.868 43.478 0.00 0.00 0.00 3.85
2958 3030 3.717707 TCTCAAACTCAACTGACCTTCG 58.282 45.455 0.00 0.00 0.00 3.79
2959 3031 4.453819 CCATCTCAAACTCAACTGACCTTC 59.546 45.833 0.00 0.00 0.00 3.46
2970 3042 6.226787 TCTCTTCTGAAACCATCTCAAACTC 58.773 40.000 0.00 0.00 0.00 3.01
3012 3084 2.224523 TGACTGGCGGAGATGTTCTTTT 60.225 45.455 0.00 0.00 0.00 2.27
3025 3097 3.190327 TGAAACCAACATAATGACTGGCG 59.810 43.478 0.00 0.00 30.55 5.69
3158 3230 7.721399 AGGTAATTTGAGTTCAGACAACAATCT 59.279 33.333 0.00 0.00 0.00 2.40
3286 3359 9.333497 CATGCCATAATTAGATTGATTTGTACG 57.667 33.333 0.00 0.00 0.00 3.67
3457 3535 2.887151 AAGTAATCTGCTGGTTGCCT 57.113 45.000 0.00 0.00 42.00 4.75
3481 3560 9.264719 GTAGTGGTACTTTAGTTAACAACATGT 57.735 33.333 8.61 0.00 0.00 3.21
3548 3637 2.294233 CTGAGCTAGCCACATCTCTCTC 59.706 54.545 12.13 0.00 0.00 3.20
3549 3638 2.091939 TCTGAGCTAGCCACATCTCTCT 60.092 50.000 12.13 0.00 0.00 3.10
3550 3639 2.305928 TCTGAGCTAGCCACATCTCTC 58.694 52.381 12.13 0.00 0.00 3.20
3551 3640 2.450867 TCTGAGCTAGCCACATCTCT 57.549 50.000 12.13 0.00 0.00 3.10
3552 3641 2.627221 TGATCTGAGCTAGCCACATCTC 59.373 50.000 12.13 11.49 0.00 2.75
3553 3642 2.629137 CTGATCTGAGCTAGCCACATCT 59.371 50.000 12.13 2.75 0.00 2.90
3554 3643 2.288948 CCTGATCTGAGCTAGCCACATC 60.289 54.545 12.13 11.87 0.00 3.06
3555 3644 1.693062 CCTGATCTGAGCTAGCCACAT 59.307 52.381 12.13 2.38 0.00 3.21
3556 3645 1.117994 CCTGATCTGAGCTAGCCACA 58.882 55.000 12.13 11.40 0.00 4.17
3557 3646 1.118838 ACCTGATCTGAGCTAGCCAC 58.881 55.000 12.13 6.84 0.00 5.01
3603 3692 2.912295 TCAGATCAAGGTGGATTGTCCA 59.088 45.455 0.00 0.00 45.98 4.02
3668 3758 1.344942 GCACGTACGTCCAAGCTGAG 61.345 60.000 19.94 5.02 0.00 3.35
3695 3785 0.245539 TGCTTCGTTTAGCGCCTAGT 59.754 50.000 2.29 0.00 44.18 2.57
3739 3832 5.159209 TCTCGTCAATCATCATCATCATCG 58.841 41.667 0.00 0.00 0.00 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.