Multiple sequence alignment - TraesCS7B01G302400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G302400 chr7B 100.000 4740 0 0 1 4740 539228726 539233465 0.000000e+00 8754.0
1 TraesCS7B01G302400 chr7B 97.761 134 2 1 2482 2614 350883085 350883218 3.690000e-56 230.0
2 TraesCS7B01G302400 chr7B 94.203 138 5 3 2481 2616 50613521 50613657 1.730000e-49 207.0
3 TraesCS7B01G302400 chr7B 93.525 139 8 1 2482 2619 720120582 720120720 6.220000e-49 206.0
4 TraesCS7B01G302400 chr7B 85.000 80 11 1 1 80 627296118 627296040 3.930000e-11 80.5
5 TraesCS7B01G302400 chr7A 90.793 1879 66 40 559 2386 581429335 581431157 0.000000e+00 2412.0
6 TraesCS7B01G302400 chr7A 94.841 1318 51 10 2819 4130 581431472 581432778 0.000000e+00 2041.0
7 TraesCS7B01G302400 chr7A 88.315 368 16 7 4379 4719 581433020 581433387 2.640000e-112 416.0
8 TraesCS7B01G302400 chr7A 93.750 128 4 3 4132 4259 581432815 581432938 6.260000e-44 189.0
9 TraesCS7B01G302400 chr7A 90.090 111 11 0 2613 2723 581431273 581431383 1.370000e-30 145.0
10 TraesCS7B01G302400 chr7A 87.013 77 10 0 1 77 497585977 497586053 2.350000e-13 87.9
11 TraesCS7B01G302400 chr7A 90.000 50 4 1 376 424 662423203 662423252 3.960000e-06 63.9
12 TraesCS7B01G302400 chr7D 95.745 1316 46 8 2819 4130 510706377 510707686 0.000000e+00 2111.0
13 TraesCS7B01G302400 chr7D 93.645 1070 38 10 1318 2386 510705022 510706062 0.000000e+00 1572.0
14 TraesCS7B01G302400 chr7D 91.240 605 24 8 4133 4719 510707725 510708318 0.000000e+00 797.0
15 TraesCS7B01G302400 chr7D 84.926 544 38 19 784 1285 510704244 510704785 1.180000e-140 510.0
16 TraesCS7B01G302400 chr7D 92.188 192 13 1 586 777 510702879 510703068 2.170000e-68 270.0
17 TraesCS7B01G302400 chr7D 94.286 140 4 4 2481 2618 194601795 194601658 1.340000e-50 211.0
18 TraesCS7B01G302400 chr7D 93.860 114 7 0 2613 2726 510706178 510706291 6.310000e-39 172.0
19 TraesCS7B01G302400 chr7D 83.529 170 23 2 378 547 510700260 510700424 2.280000e-33 154.0
20 TraesCS7B01G302400 chr7D 93.671 79 4 1 2671 2748 510706274 510706352 3.000000e-22 117.0
21 TraesCS7B01G302400 chr7D 87.500 80 9 1 1 80 571238108 571238030 1.820000e-14 91.6
22 TraesCS7B01G302400 chr6B 77.128 787 157 19 2965 3741 229205662 229204889 7.280000e-118 435.0
23 TraesCS7B01G302400 chr6B 85.093 161 21 3 1656 1815 229206711 229206553 1.370000e-35 161.0
24 TraesCS7B01G302400 chr5D 92.963 270 16 3 3849 4117 390709879 390710146 1.600000e-104 390.0
25 TraesCS7B01G302400 chr5D 78.521 284 54 5 114 393 325463558 325463278 3.770000e-41 180.0
26 TraesCS7B01G302400 chr5D 75.806 248 54 5 114 358 333989694 333989938 2.320000e-23 121.0
27 TraesCS7B01G302400 chr5D 87.500 64 8 0 447 510 361603736 361603799 1.830000e-09 75.0
28 TraesCS7B01G302400 chr5B 89.437 284 16 5 3850 4132 471137883 471138153 3.510000e-91 346.0
29 TraesCS7B01G302400 chr5B 94.891 137 5 2 2483 2617 455276813 455276677 3.720000e-51 213.0
30 TraesCS7B01G302400 chr4D 96.850 127 2 2 2489 2614 165913357 165913232 1.340000e-50 211.0
31 TraesCS7B01G302400 chr4D 93.706 143 5 4 2479 2618 488334023 488333882 1.340000e-50 211.0
32 TraesCS7B01G302400 chr3B 94.203 138 5 3 2481 2616 378729807 378729943 1.730000e-49 207.0
33 TraesCS7B01G302400 chr3B 89.855 69 7 0 374 442 828540411 828540343 6.530000e-14 89.8
34 TraesCS7B01G302400 chr2D 92.958 142 8 2 2474 2614 100314171 100314031 6.220000e-49 206.0
35 TraesCS7B01G302400 chr2D 83.439 157 20 5 121 272 484491667 484491822 1.780000e-29 141.0
36 TraesCS7B01G302400 chr3D 76.156 411 77 17 116 508 312885084 312884677 3.740000e-46 196.0
37 TraesCS7B01G302400 chr3D 85.271 129 18 1 114 242 126215707 126215580 1.070000e-26 132.0
38 TraesCS7B01G302400 chr3D 77.041 196 43 2 260 454 487583578 487583772 1.390000e-20 111.0
39 TraesCS7B01G302400 chr6D 86.335 161 19 3 1656 1815 131688609 131688451 6.310000e-39 172.0
40 TraesCS7B01G302400 chr6D 78.469 209 41 3 109 314 312825607 312825814 2.980000e-27 134.0
41 TraesCS7B01G302400 chr6D 83.146 89 14 1 324 412 56920155 56920068 3.930000e-11 80.5
42 TraesCS7B01G302400 chr4A 75.393 382 76 15 144 516 690125628 690125256 8.160000e-38 169.0
43 TraesCS7B01G302400 chr6A 85.276 163 21 3 1656 1817 169989973 169989813 1.060000e-36 165.0
44 TraesCS7B01G302400 chr6A 85.093 161 21 3 1656 1815 170013214 170013056 1.370000e-35 161.0
45 TraesCS7B01G302400 chr6A 97.917 48 1 0 4579 4626 39607552 39607505 3.040000e-12 84.2
46 TraesCS7B01G302400 chr6A 96.000 50 1 1 4578 4626 39566068 39566019 3.930000e-11 80.5
47 TraesCS7B01G302400 chr5A 74.169 391 84 12 116 497 632998375 632997993 3.820000e-31 147.0
48 TraesCS7B01G302400 chr1D 81.333 150 27 1 113 262 211302620 211302768 2.320000e-23 121.0
49 TraesCS7B01G302400 chr1B 78.351 194 36 5 152 341 402593375 402593184 2.320000e-23 121.0
50 TraesCS7B01G302400 chr2B 89.873 79 6 2 1 78 99774230 99774153 3.020000e-17 100.0
51 TraesCS7B01G302400 chr4B 97.917 48 1 0 4579 4626 260433360 260433313 3.040000e-12 84.2
52 TraesCS7B01G302400 chr4B 96.000 50 1 1 4578 4626 171195857 171195808 3.930000e-11 80.5
53 TraesCS7B01G302400 chr1A 96.000 50 1 1 4578 4626 30447985 30447936 3.930000e-11 80.5
54 TraesCS7B01G302400 chr1A 96.000 50 1 1 4578 4626 501900602 501900651 3.930000e-11 80.5
55 TraesCS7B01G302400 chr1A 96.000 50 1 1 4578 4626 585668980 585668931 3.930000e-11 80.5
56 TraesCS7B01G302400 chr1A 97.059 34 1 0 465 498 516693240 516693207 1.840000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G302400 chr7B 539228726 539233465 4739 False 8754.000 8754 100.0000 1 4740 1 chr7B.!!$F3 4739
1 TraesCS7B01G302400 chr7A 581429335 581433387 4052 False 1040.600 2412 91.5578 559 4719 5 chr7A.!!$F3 4160
2 TraesCS7B01G302400 chr7D 510700260 510708318 8058 False 712.875 2111 91.1005 378 4719 8 chr7D.!!$F1 4341
3 TraesCS7B01G302400 chr6B 229204889 229206711 1822 True 298.000 435 81.1105 1656 3741 2 chr6B.!!$R1 2085

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
72 73 0.032217 AAGAGGGCCAGAGAGAGAGG 60.032 60.0 6.18 0.00 0.00 3.69 F
154 155 0.108424 GAGCTAGTGGCACAGTGAGG 60.108 60.0 21.41 4.01 44.58 3.86 F
160 161 0.108585 GTGGCACAGTGAGGAAGGAA 59.891 55.0 13.86 0.00 41.80 3.36 F
360 361 0.111832 ACCCGGACGGCTCATATCTA 59.888 55.0 0.73 0.00 33.26 1.98 F
437 438 0.388134 TTAAGGCGCTCGTGTGAGTC 60.388 55.0 7.64 0.00 44.48 3.36 F
1107 4734 0.678048 GCCGCTCCTGTTTTCTGGAT 60.678 55.0 0.00 0.00 44.76 3.41 F
2504 6433 0.549950 AGATACTCCCTCCGTCCGAA 59.450 55.0 0.00 0.00 0.00 4.30 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1192 4830 0.316841 CCCATCCACCAACCAAAACG 59.683 55.000 0.00 0.00 0.00 3.60 R
1270 4911 1.728490 GCGGCAAGCCCCTTCAATAG 61.728 60.000 5.34 0.00 40.81 1.73 R
1300 4942 2.025321 ACAAATCCCCGCAAGAACCTAT 60.025 45.455 0.00 0.00 43.02 2.57 R
1878 5735 3.006940 TGACCCATTCGTTAGCATCAAC 58.993 45.455 0.00 0.00 0.00 3.18 R
1951 5826 5.585047 GCTGTACTAATTTTACTCCACTGGG 59.415 44.000 0.00 0.00 0.00 4.45 R
2591 6520 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12 R
3872 8033 0.392863 TGATCACACCGAAGCCATGG 60.393 55.000 7.63 7.63 0.00 3.66 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.973694 TGGCGTAGGTGGTTATCTTC 57.026 50.000 0.00 0.00 0.00 2.87
21 22 1.483415 TGGCGTAGGTGGTTATCTTCC 59.517 52.381 0.00 0.00 0.00 3.46
22 23 1.761198 GGCGTAGGTGGTTATCTTCCT 59.239 52.381 0.00 0.00 0.00 3.36
23 24 2.223994 GGCGTAGGTGGTTATCTTCCTC 60.224 54.545 0.00 0.00 0.00 3.71
24 25 2.223994 GCGTAGGTGGTTATCTTCCTCC 60.224 54.545 0.00 0.00 38.47 4.30
25 26 2.034305 CGTAGGTGGTTATCTTCCTCCG 59.966 54.545 0.00 0.00 41.72 4.63
26 27 1.497161 AGGTGGTTATCTTCCTCCGG 58.503 55.000 0.00 0.00 41.72 5.14
27 28 1.007963 AGGTGGTTATCTTCCTCCGGA 59.992 52.381 2.93 2.93 41.72 5.14
28 29 1.138464 GGTGGTTATCTTCCTCCGGAC 59.862 57.143 0.00 0.00 0.00 4.79
29 30 1.138464 GTGGTTATCTTCCTCCGGACC 59.862 57.143 0.00 0.00 0.00 4.46
30 31 1.273381 TGGTTATCTTCCTCCGGACCA 60.273 52.381 0.00 0.00 33.62 4.02
31 32 2.047830 GGTTATCTTCCTCCGGACCAT 58.952 52.381 0.00 0.00 0.00 3.55
32 33 2.224305 GGTTATCTTCCTCCGGACCATG 60.224 54.545 0.00 0.00 0.00 3.66
33 34 1.717032 TATCTTCCTCCGGACCATGG 58.283 55.000 11.19 11.19 0.00 3.66
34 35 1.700042 ATCTTCCTCCGGACCATGGC 61.700 60.000 13.04 4.47 0.00 4.40
35 36 3.740128 CTTCCTCCGGACCATGGCG 62.740 68.421 13.04 8.35 0.00 5.69
36 37 4.770362 TCCTCCGGACCATGGCGA 62.770 66.667 13.04 1.21 0.00 5.54
37 38 3.781307 CCTCCGGACCATGGCGAA 61.781 66.667 13.04 0.00 0.00 4.70
38 39 2.267642 CTCCGGACCATGGCGAAA 59.732 61.111 13.04 0.00 0.00 3.46
39 40 1.153168 CTCCGGACCATGGCGAAAT 60.153 57.895 13.04 0.00 0.00 2.17
40 41 1.153249 TCCGGACCATGGCGAAATC 60.153 57.895 13.04 0.42 0.00 2.17
41 42 2.534019 CCGGACCATGGCGAAATCG 61.534 63.158 13.04 6.81 43.27 3.34
42 43 2.534019 CGGACCATGGCGAAATCGG 61.534 63.158 13.04 1.87 40.23 4.18
43 44 1.153249 GGACCATGGCGAAATCGGA 60.153 57.895 13.04 0.00 40.23 4.55
44 45 1.160329 GGACCATGGCGAAATCGGAG 61.160 60.000 13.04 0.00 40.23 4.63
45 46 0.179084 GACCATGGCGAAATCGGAGA 60.179 55.000 13.04 0.00 45.75 3.71
46 47 0.179073 ACCATGGCGAAATCGGAGAG 60.179 55.000 13.04 0.00 43.63 3.20
47 48 1.502163 CCATGGCGAAATCGGAGAGC 61.502 60.000 0.00 0.00 43.63 4.09
48 49 1.592669 ATGGCGAAATCGGAGAGCG 60.593 57.895 4.84 0.00 43.63 5.03
49 50 2.202756 GGCGAAATCGGAGAGCGT 60.203 61.111 4.84 0.00 43.63 5.07
50 51 2.517450 GGCGAAATCGGAGAGCGTG 61.517 63.158 4.84 0.00 43.63 5.34
51 52 2.517450 GCGAAATCGGAGAGCGTGG 61.517 63.158 4.84 0.00 43.63 4.94
52 53 1.878522 CGAAATCGGAGAGCGTGGG 60.879 63.158 0.00 0.00 43.63 4.61
53 54 1.515954 GAAATCGGAGAGCGTGGGA 59.484 57.895 0.00 0.00 43.63 4.37
54 55 0.108329 GAAATCGGAGAGCGTGGGAA 60.108 55.000 0.00 0.00 43.63 3.97
55 56 0.108138 AAATCGGAGAGCGTGGGAAG 60.108 55.000 0.00 0.00 43.63 3.46
56 57 0.970937 AATCGGAGAGCGTGGGAAGA 60.971 55.000 0.00 0.00 43.63 2.87
57 58 1.388065 ATCGGAGAGCGTGGGAAGAG 61.388 60.000 0.00 0.00 43.63 2.85
58 59 2.896443 GGAGAGCGTGGGAAGAGG 59.104 66.667 0.00 0.00 0.00 3.69
59 60 2.726351 GGAGAGCGTGGGAAGAGGG 61.726 68.421 0.00 0.00 0.00 4.30
60 61 3.378399 GAGAGCGTGGGAAGAGGGC 62.378 68.421 0.00 0.00 0.00 5.19
61 62 4.475135 GAGCGTGGGAAGAGGGCC 62.475 72.222 0.00 0.00 0.00 5.80
63 64 4.785453 GCGTGGGAAGAGGGCCAG 62.785 72.222 6.18 0.00 0.00 4.85
64 65 3.003173 CGTGGGAAGAGGGCCAGA 61.003 66.667 6.18 0.00 0.00 3.86
65 66 2.993853 GTGGGAAGAGGGCCAGAG 59.006 66.667 6.18 0.00 0.00 3.35
66 67 1.613630 GTGGGAAGAGGGCCAGAGA 60.614 63.158 6.18 0.00 0.00 3.10
67 68 1.306482 TGGGAAGAGGGCCAGAGAG 60.306 63.158 6.18 0.00 0.00 3.20
68 69 1.002274 GGGAAGAGGGCCAGAGAGA 59.998 63.158 6.18 0.00 0.00 3.10
69 70 1.048160 GGGAAGAGGGCCAGAGAGAG 61.048 65.000 6.18 0.00 0.00 3.20
70 71 0.032615 GGAAGAGGGCCAGAGAGAGA 60.033 60.000 6.18 0.00 0.00 3.10
71 72 1.402787 GAAGAGGGCCAGAGAGAGAG 58.597 60.000 6.18 0.00 0.00 3.20
72 73 0.032217 AAGAGGGCCAGAGAGAGAGG 60.032 60.000 6.18 0.00 0.00 3.69
73 74 1.457455 GAGGGCCAGAGAGAGAGGG 60.457 68.421 6.18 0.00 0.00 4.30
74 75 1.938596 AGGGCCAGAGAGAGAGGGA 60.939 63.158 6.18 0.00 0.00 4.20
75 76 1.457455 GGGCCAGAGAGAGAGGGAG 60.457 68.421 4.39 0.00 0.00 4.30
76 77 1.618030 GGCCAGAGAGAGAGGGAGA 59.382 63.158 0.00 0.00 0.00 3.71
77 78 0.468029 GGCCAGAGAGAGAGGGAGAG 60.468 65.000 0.00 0.00 0.00 3.20
78 79 0.550914 GCCAGAGAGAGAGGGAGAGA 59.449 60.000 0.00 0.00 0.00 3.10
79 80 1.477558 GCCAGAGAGAGAGGGAGAGAG 60.478 61.905 0.00 0.00 0.00 3.20
80 81 2.126882 CCAGAGAGAGAGGGAGAGAGA 58.873 57.143 0.00 0.00 0.00 3.10
81 82 2.105477 CCAGAGAGAGAGGGAGAGAGAG 59.895 59.091 0.00 0.00 0.00 3.20
82 83 3.041211 CAGAGAGAGAGGGAGAGAGAGA 58.959 54.545 0.00 0.00 0.00 3.10
83 84 3.070734 CAGAGAGAGAGGGAGAGAGAGAG 59.929 56.522 0.00 0.00 0.00 3.20
84 85 3.051803 AGAGAGAGAGGGAGAGAGAGAGA 60.052 52.174 0.00 0.00 0.00 3.10
85 86 3.711704 GAGAGAGAGGGAGAGAGAGAGAA 59.288 52.174 0.00 0.00 0.00 2.87
86 87 4.111577 AGAGAGAGGGAGAGAGAGAGAAA 58.888 47.826 0.00 0.00 0.00 2.52
87 88 4.164988 AGAGAGAGGGAGAGAGAGAGAAAG 59.835 50.000 0.00 0.00 0.00 2.62
88 89 4.111577 AGAGAGGGAGAGAGAGAGAAAGA 58.888 47.826 0.00 0.00 0.00 2.52
89 90 4.164988 AGAGAGGGAGAGAGAGAGAAAGAG 59.835 50.000 0.00 0.00 0.00 2.85
90 91 4.111577 AGAGGGAGAGAGAGAGAAAGAGA 58.888 47.826 0.00 0.00 0.00 3.10
91 92 4.540099 AGAGGGAGAGAGAGAGAAAGAGAA 59.460 45.833 0.00 0.00 0.00 2.87
92 93 5.015178 AGAGGGAGAGAGAGAGAAAGAGAAA 59.985 44.000 0.00 0.00 0.00 2.52
93 94 5.264395 AGGGAGAGAGAGAGAAAGAGAAAG 58.736 45.833 0.00 0.00 0.00 2.62
94 95 5.015178 AGGGAGAGAGAGAGAAAGAGAAAGA 59.985 44.000 0.00 0.00 0.00 2.52
95 96 5.358160 GGGAGAGAGAGAGAAAGAGAAAGAG 59.642 48.000 0.00 0.00 0.00 2.85
96 97 6.180472 GGAGAGAGAGAGAAAGAGAAAGAGA 58.820 44.000 0.00 0.00 0.00 3.10
97 98 6.317391 GGAGAGAGAGAGAAAGAGAAAGAGAG 59.683 46.154 0.00 0.00 0.00 3.20
98 99 7.020827 AGAGAGAGAGAAAGAGAAAGAGAGA 57.979 40.000 0.00 0.00 0.00 3.10
99 100 7.108847 AGAGAGAGAGAAAGAGAAAGAGAGAG 58.891 42.308 0.00 0.00 0.00 3.20
100 101 7.020827 AGAGAGAGAAAGAGAAAGAGAGAGA 57.979 40.000 0.00 0.00 0.00 3.10
101 102 7.461749 AGAGAGAGAAAGAGAAAGAGAGAGAA 58.538 38.462 0.00 0.00 0.00 2.87
102 103 7.944554 AGAGAGAGAAAGAGAAAGAGAGAGAAA 59.055 37.037 0.00 0.00 0.00 2.52
103 104 8.115490 AGAGAGAAAGAGAAAGAGAGAGAAAG 57.885 38.462 0.00 0.00 0.00 2.62
104 105 7.944554 AGAGAGAAAGAGAAAGAGAGAGAAAGA 59.055 37.037 0.00 0.00 0.00 2.52
105 106 8.477419 AGAGAAAGAGAAAGAGAGAGAAAGAA 57.523 34.615 0.00 0.00 0.00 2.52
106 107 8.923270 AGAGAAAGAGAAAGAGAGAGAAAGAAA 58.077 33.333 0.00 0.00 0.00 2.52
107 108 9.196552 GAGAAAGAGAAAGAGAGAGAAAGAAAG 57.803 37.037 0.00 0.00 0.00 2.62
108 109 8.923270 AGAAAGAGAAAGAGAGAGAAAGAAAGA 58.077 33.333 0.00 0.00 0.00 2.52
109 110 9.196552 GAAAGAGAAAGAGAGAGAAAGAAAGAG 57.803 37.037 0.00 0.00 0.00 2.85
110 111 8.477419 AAGAGAAAGAGAGAGAAAGAAAGAGA 57.523 34.615 0.00 0.00 0.00 3.10
111 112 8.477419 AGAGAAAGAGAGAGAAAGAAAGAGAA 57.523 34.615 0.00 0.00 0.00 2.87
112 113 8.923270 AGAGAAAGAGAGAGAAAGAAAGAGAAA 58.077 33.333 0.00 0.00 0.00 2.52
113 114 9.196552 GAGAAAGAGAGAGAAAGAAAGAGAAAG 57.803 37.037 0.00 0.00 0.00 2.62
114 115 8.923270 AGAAAGAGAGAGAAAGAAAGAGAAAGA 58.077 33.333 0.00 0.00 0.00 2.52
115 116 9.196552 GAAAGAGAGAGAAAGAAAGAGAAAGAG 57.803 37.037 0.00 0.00 0.00 2.85
116 117 8.477419 AAGAGAGAGAAAGAAAGAGAAAGAGA 57.523 34.615 0.00 0.00 0.00 3.10
117 118 8.115490 AGAGAGAGAAAGAAAGAGAAAGAGAG 57.885 38.462 0.00 0.00 0.00 3.20
118 119 7.944554 AGAGAGAGAAAGAAAGAGAAAGAGAGA 59.055 37.037 0.00 0.00 0.00 3.10
119 120 8.115490 AGAGAGAAAGAAAGAGAAAGAGAGAG 57.885 38.462 0.00 0.00 0.00 3.20
120 121 7.177392 AGAGAGAAAGAAAGAGAAAGAGAGAGG 59.823 40.741 0.00 0.00 0.00 3.69
121 122 7.010160 AGAGAAAGAAAGAGAAAGAGAGAGGA 58.990 38.462 0.00 0.00 0.00 3.71
122 123 7.177392 AGAGAAAGAAAGAGAAAGAGAGAGGAG 59.823 40.741 0.00 0.00 0.00 3.69
123 124 6.211384 AGAAAGAAAGAGAAAGAGAGAGGAGG 59.789 42.308 0.00 0.00 0.00 4.30
124 125 3.769300 AGAAAGAGAAAGAGAGAGGAGGC 59.231 47.826 0.00 0.00 0.00 4.70
125 126 1.762708 AGAGAAAGAGAGAGGAGGCG 58.237 55.000 0.00 0.00 0.00 5.52
126 127 0.744281 GAGAAAGAGAGAGGAGGCGG 59.256 60.000 0.00 0.00 0.00 6.13
127 128 0.333312 AGAAAGAGAGAGGAGGCGGA 59.667 55.000 0.00 0.00 0.00 5.54
128 129 1.063266 AGAAAGAGAGAGGAGGCGGAT 60.063 52.381 0.00 0.00 0.00 4.18
129 130 1.068434 GAAAGAGAGAGGAGGCGGATG 59.932 57.143 0.00 0.00 0.00 3.51
130 131 0.758685 AAGAGAGAGGAGGCGGATGG 60.759 60.000 0.00 0.00 0.00 3.51
131 132 2.123077 AGAGAGGAGGCGGATGGG 60.123 66.667 0.00 0.00 0.00 4.00
132 133 3.934962 GAGAGGAGGCGGATGGGC 61.935 72.222 0.00 0.00 42.69 5.36
140 141 3.606662 GCGGATGGGCTCGAGCTA 61.607 66.667 34.46 24.32 41.70 3.32
141 142 2.647875 CGGATGGGCTCGAGCTAG 59.352 66.667 34.46 16.44 41.70 3.42
142 143 2.196925 CGGATGGGCTCGAGCTAGT 61.197 63.158 34.46 20.83 41.70 2.57
143 144 1.365633 GGATGGGCTCGAGCTAGTG 59.634 63.158 34.46 0.00 41.70 2.74
144 145 1.365633 GATGGGCTCGAGCTAGTGG 59.634 63.158 34.46 0.00 41.70 4.00
145 146 2.707529 GATGGGCTCGAGCTAGTGGC 62.708 65.000 34.46 17.92 41.70 5.01
146 147 3.461773 GGGCTCGAGCTAGTGGCA 61.462 66.667 34.46 0.00 44.79 4.92
147 148 2.202810 GGCTCGAGCTAGTGGCAC 60.203 66.667 34.46 10.29 44.79 5.01
148 149 2.573869 GCTCGAGCTAGTGGCACA 59.426 61.111 29.88 5.00 44.79 4.57
149 150 1.518133 GCTCGAGCTAGTGGCACAG 60.518 63.158 29.88 15.46 44.79 3.66
151 152 0.457509 CTCGAGCTAGTGGCACAGTG 60.458 60.000 21.41 10.09 44.58 3.66
152 153 0.893727 TCGAGCTAGTGGCACAGTGA 60.894 55.000 21.41 11.19 44.58 3.41
153 154 0.457509 CGAGCTAGTGGCACAGTGAG 60.458 60.000 21.41 11.89 44.58 3.51
154 155 0.108424 GAGCTAGTGGCACAGTGAGG 60.108 60.000 21.41 4.01 44.58 3.86
155 156 0.542938 AGCTAGTGGCACAGTGAGGA 60.543 55.000 21.41 0.00 44.58 3.71
156 157 0.321671 GCTAGTGGCACAGTGAGGAA 59.678 55.000 21.41 0.00 44.58 3.36
157 158 1.674221 GCTAGTGGCACAGTGAGGAAG 60.674 57.143 21.41 4.89 44.58 3.46
158 159 0.976641 TAGTGGCACAGTGAGGAAGG 59.023 55.000 21.41 0.00 44.58 3.46
159 160 0.764369 AGTGGCACAGTGAGGAAGGA 60.764 55.000 21.41 0.00 42.47 3.36
160 161 0.108585 GTGGCACAGTGAGGAAGGAA 59.891 55.000 13.86 0.00 41.80 3.36
161 162 0.397941 TGGCACAGTGAGGAAGGAAG 59.602 55.000 4.15 0.00 0.00 3.46
162 163 0.398318 GGCACAGTGAGGAAGGAAGT 59.602 55.000 4.15 0.00 0.00 3.01
163 164 1.517242 GCACAGTGAGGAAGGAAGTG 58.483 55.000 4.15 0.00 0.00 3.16
164 165 1.879796 GCACAGTGAGGAAGGAAGTGG 60.880 57.143 4.15 0.00 0.00 4.00
165 166 1.694150 CACAGTGAGGAAGGAAGTGGA 59.306 52.381 0.00 0.00 0.00 4.02
166 167 2.304180 CACAGTGAGGAAGGAAGTGGAT 59.696 50.000 0.00 0.00 0.00 3.41
167 168 3.515502 CACAGTGAGGAAGGAAGTGGATA 59.484 47.826 0.00 0.00 0.00 2.59
168 169 3.772025 ACAGTGAGGAAGGAAGTGGATAG 59.228 47.826 0.00 0.00 0.00 2.08
169 170 3.133721 CAGTGAGGAAGGAAGTGGATAGG 59.866 52.174 0.00 0.00 0.00 2.57
170 171 2.119495 TGAGGAAGGAAGTGGATAGGC 58.881 52.381 0.00 0.00 0.00 3.93
171 172 2.293184 TGAGGAAGGAAGTGGATAGGCT 60.293 50.000 0.00 0.00 0.00 4.58
172 173 3.052109 TGAGGAAGGAAGTGGATAGGCTA 60.052 47.826 0.00 0.00 0.00 3.93
173 174 3.576550 GAGGAAGGAAGTGGATAGGCTAG 59.423 52.174 0.00 0.00 0.00 3.42
174 175 2.635427 GGAAGGAAGTGGATAGGCTAGG 59.365 54.545 0.00 0.00 0.00 3.02
175 176 2.407340 AGGAAGTGGATAGGCTAGGG 57.593 55.000 0.00 0.00 0.00 3.53
176 177 1.581149 AGGAAGTGGATAGGCTAGGGT 59.419 52.381 0.00 0.00 0.00 4.34
177 178 1.972075 GGAAGTGGATAGGCTAGGGTC 59.028 57.143 0.00 0.00 0.00 4.46
178 179 1.614413 GAAGTGGATAGGCTAGGGTCG 59.386 57.143 0.00 0.00 0.00 4.79
179 180 0.178958 AGTGGATAGGCTAGGGTCGG 60.179 60.000 0.00 0.00 0.00 4.79
180 181 1.155390 TGGATAGGCTAGGGTCGGG 59.845 63.158 0.00 0.00 0.00 5.14
181 182 1.609794 GGATAGGCTAGGGTCGGGG 60.610 68.421 0.00 0.00 0.00 5.73
182 183 1.609794 GATAGGCTAGGGTCGGGGG 60.610 68.421 0.00 0.00 0.00 5.40
183 184 2.090377 GATAGGCTAGGGTCGGGGGA 62.090 65.000 0.00 0.00 0.00 4.81
184 185 2.383477 ATAGGCTAGGGTCGGGGGAC 62.383 65.000 0.00 0.00 0.00 4.46
187 188 2.832201 CTAGGGTCGGGGGACGTC 60.832 72.222 7.13 7.13 44.69 4.34
188 189 4.802051 TAGGGTCGGGGGACGTCG 62.802 72.222 9.92 0.00 44.69 5.12
199 200 4.557942 GACGTCGGTCGGCTTAAA 57.442 55.556 0.00 0.00 45.28 1.52
200 201 3.040409 GACGTCGGTCGGCTTAAAT 57.960 52.632 0.00 0.00 45.28 1.40
201 202 2.193306 GACGTCGGTCGGCTTAAATA 57.807 50.000 0.00 0.00 45.28 1.40
202 203 2.114825 GACGTCGGTCGGCTTAAATAG 58.885 52.381 0.00 0.00 45.28 1.73
203 204 3.665555 GACGTCGGTCGGCTTAAATAGC 61.666 54.545 0.00 0.00 45.28 2.97
286 287 1.817609 GACGTTTGTCAAACCGTTGG 58.182 50.000 20.20 10.01 44.82 3.77
287 288 0.452585 ACGTTTGTCAAACCGTTGGG 59.547 50.000 20.20 9.39 38.14 4.12
288 289 4.079434 GACGTTTGTCAAACCGTTGGGT 62.079 50.000 20.20 12.16 46.59 4.51
289 290 5.511211 GACGTTTGTCAAACCGTTGGGTT 62.511 47.826 20.20 0.00 46.35 4.11
299 300 2.785713 CCGTTGGGTTTTTGAACGAT 57.214 45.000 0.00 0.00 44.04 3.73
300 301 3.086818 CCGTTGGGTTTTTGAACGATT 57.913 42.857 0.00 0.00 44.04 3.34
301 302 3.047093 CCGTTGGGTTTTTGAACGATTC 58.953 45.455 0.00 0.00 44.04 2.52
302 303 3.047093 CGTTGGGTTTTTGAACGATTCC 58.953 45.455 0.00 0.00 44.04 3.01
303 304 3.047093 GTTGGGTTTTTGAACGATTCCG 58.953 45.455 0.00 0.00 42.50 4.30
304 305 1.001158 TGGGTTTTTGAACGATTCCGC 60.001 47.619 0.00 0.00 39.95 5.54
305 306 1.323791 GGTTTTTGAACGATTCCGCG 58.676 50.000 0.00 0.00 39.95 6.46
307 308 1.706597 GTTTTTGAACGATTCCGCGTG 59.293 47.619 4.92 0.00 44.86 5.34
308 309 0.236187 TTTTGAACGATTCCGCGTGG 59.764 50.000 9.28 9.28 44.86 4.94
309 310 1.570347 TTTGAACGATTCCGCGTGGG 61.570 55.000 16.49 1.03 44.86 4.61
310 311 2.125832 GAACGATTCCGCGTGGGA 60.126 61.111 16.49 6.87 44.86 4.37
322 323 3.948719 GTGGGACCCTGACGCCAA 61.949 66.667 13.00 0.00 0.00 4.52
323 324 2.933287 TGGGACCCTGACGCCAAT 60.933 61.111 13.00 0.00 0.00 3.16
324 325 2.124695 GGGACCCTGACGCCAATC 60.125 66.667 2.09 0.00 0.00 2.67
325 326 2.124695 GGACCCTGACGCCAATCC 60.125 66.667 0.00 0.00 0.00 3.01
326 327 2.511600 GACCCTGACGCCAATCCG 60.512 66.667 0.00 0.00 0.00 4.18
327 328 3.000819 ACCCTGACGCCAATCCGA 61.001 61.111 0.00 0.00 0.00 4.55
328 329 2.311688 GACCCTGACGCCAATCCGAT 62.312 60.000 0.00 0.00 0.00 4.18
329 330 1.889105 CCCTGACGCCAATCCGATG 60.889 63.158 0.00 0.00 0.00 3.84
330 331 1.153369 CCTGACGCCAATCCGATGT 60.153 57.895 0.00 0.00 0.00 3.06
331 332 1.431488 CCTGACGCCAATCCGATGTG 61.431 60.000 0.00 0.00 0.00 3.21
332 333 0.740868 CTGACGCCAATCCGATGTGT 60.741 55.000 0.00 0.00 0.00 3.72
333 334 1.018752 TGACGCCAATCCGATGTGTG 61.019 55.000 0.00 0.00 0.00 3.82
334 335 2.309764 GACGCCAATCCGATGTGTGC 62.310 60.000 0.00 0.00 0.00 4.57
335 336 2.404789 GCCAATCCGATGTGTGCG 59.595 61.111 0.00 0.00 0.00 5.34
356 357 3.845259 GCACCCGGACGGCTCATA 61.845 66.667 0.73 0.00 33.26 2.15
357 358 3.138625 CACCCGGACGGCTCATAT 58.861 61.111 0.73 0.00 33.26 1.78
358 359 1.006102 CACCCGGACGGCTCATATC 60.006 63.158 0.73 0.00 33.26 1.63
359 360 1.152525 ACCCGGACGGCTCATATCT 60.153 57.895 0.73 0.00 33.26 1.98
360 361 0.111832 ACCCGGACGGCTCATATCTA 59.888 55.000 0.73 0.00 33.26 1.98
361 362 0.526662 CCCGGACGGCTCATATCTAC 59.473 60.000 0.73 0.00 0.00 2.59
362 363 0.526662 CCGGACGGCTCATATCTACC 59.473 60.000 0.00 0.00 0.00 3.18
363 364 0.526662 CGGACGGCTCATATCTACCC 59.473 60.000 0.00 0.00 0.00 3.69
364 365 0.896226 GGACGGCTCATATCTACCCC 59.104 60.000 0.00 0.00 0.00 4.95
365 366 1.629043 GACGGCTCATATCTACCCCA 58.371 55.000 0.00 0.00 0.00 4.96
366 367 2.180276 GACGGCTCATATCTACCCCAT 58.820 52.381 0.00 0.00 0.00 4.00
367 368 3.362706 GACGGCTCATATCTACCCCATA 58.637 50.000 0.00 0.00 0.00 2.74
368 369 3.767673 GACGGCTCATATCTACCCCATAA 59.232 47.826 0.00 0.00 0.00 1.90
369 370 4.362677 ACGGCTCATATCTACCCCATAAT 58.637 43.478 0.00 0.00 0.00 1.28
370 371 4.783227 ACGGCTCATATCTACCCCATAATT 59.217 41.667 0.00 0.00 0.00 1.40
371 372 5.962031 ACGGCTCATATCTACCCCATAATTA 59.038 40.000 0.00 0.00 0.00 1.40
372 373 6.442564 ACGGCTCATATCTACCCCATAATTAA 59.557 38.462 0.00 0.00 0.00 1.40
373 374 6.986817 CGGCTCATATCTACCCCATAATTAAG 59.013 42.308 0.00 0.00 0.00 1.85
374 375 7.364762 CGGCTCATATCTACCCCATAATTAAGT 60.365 40.741 0.00 0.00 0.00 2.24
375 376 8.329502 GGCTCATATCTACCCCATAATTAAGTT 58.670 37.037 0.00 0.00 0.00 2.66
376 377 9.167311 GCTCATATCTACCCCATAATTAAGTTG 57.833 37.037 0.00 0.00 0.00 3.16
390 391 5.994416 ATTAAGTTGGATATGAGGGGTGT 57.006 39.130 0.00 0.00 0.00 4.16
393 394 1.128200 TTGGATATGAGGGGTGTCGG 58.872 55.000 0.00 0.00 0.00 4.79
396 397 1.410004 GATATGAGGGGTGTCGGTCA 58.590 55.000 0.00 0.00 0.00 4.02
397 398 1.341531 GATATGAGGGGTGTCGGTCAG 59.658 57.143 0.00 0.00 0.00 3.51
415 416 2.407428 GCCTAAGCGTTTGAGCCCC 61.407 63.158 0.00 0.00 38.01 5.80
416 417 1.002624 CCTAAGCGTTTGAGCCCCA 60.003 57.895 0.00 0.00 38.01 4.96
420 421 1.917872 AAGCGTTTGAGCCCCATTTA 58.082 45.000 0.00 0.00 38.01 1.40
431 432 1.714899 CCCCATTTAAGGCGCTCGTG 61.715 60.000 7.64 0.00 0.00 4.35
437 438 0.388134 TTAAGGCGCTCGTGTGAGTC 60.388 55.000 7.64 0.00 44.48 3.36
438 439 2.523184 TAAGGCGCTCGTGTGAGTCG 62.523 60.000 7.64 5.26 44.48 4.18
439 440 4.400109 GGCGCTCGTGTGAGTCGA 62.400 66.667 7.64 0.00 44.48 4.20
440 441 2.428569 GCGCTCGTGTGAGTCGAA 60.429 61.111 0.00 0.00 44.48 3.71
441 442 2.014554 GCGCTCGTGTGAGTCGAAA 61.015 57.895 0.00 0.00 44.48 3.46
442 443 1.344942 GCGCTCGTGTGAGTCGAAAT 61.345 55.000 0.00 0.00 44.48 2.17
446 447 2.470781 GCTCGTGTGAGTCGAAATTTCG 60.471 50.000 30.11 30.11 45.81 3.46
456 457 1.296056 CGAAATTTCGTGACCGGGCT 61.296 55.000 28.21 0.00 45.09 5.19
625 3042 3.515602 AGGAATGAGACAAAAGCTGGT 57.484 42.857 0.00 0.00 0.00 4.00
645 3062 0.975556 TCCAGCTCCCATGCTACGAA 60.976 55.000 0.00 0.00 41.98 3.85
690 3107 5.812127 GTGGATCCAATGGTTAGCAAATTTC 59.188 40.000 18.20 0.00 0.00 2.17
712 3129 2.981859 GGTGCTCCGAGATAGGAAAA 57.018 50.000 0.00 0.00 40.25 2.29
713 3130 3.261981 GGTGCTCCGAGATAGGAAAAA 57.738 47.619 0.00 0.00 40.25 1.94
767 3184 1.453379 CAGCCAGAATCCTGCCCAG 60.453 63.158 0.00 0.00 39.07 4.45
777 3194 2.422231 CCTGCCCAGACTCCTCGAG 61.422 68.421 5.13 5.13 35.52 4.04
778 3195 1.379176 CTGCCCAGACTCCTCGAGA 60.379 63.158 15.71 0.00 33.32 4.04
779 3196 0.754957 CTGCCCAGACTCCTCGAGAT 60.755 60.000 15.71 0.00 33.32 2.75
887 4476 3.073735 CGTGCTGCCTCCTCCTCT 61.074 66.667 0.00 0.00 0.00 3.69
888 4477 2.899505 GTGCTGCCTCCTCCTCTC 59.100 66.667 0.00 0.00 0.00 3.20
889 4478 1.685421 GTGCTGCCTCCTCCTCTCT 60.685 63.158 0.00 0.00 0.00 3.10
904 4493 5.389520 CTCCTCTCTCTCTCTCTCTCTCTA 58.610 50.000 0.00 0.00 0.00 2.43
1098 4705 4.421479 CGTTCTCGCCGCTCCTGT 62.421 66.667 0.00 0.00 0.00 4.00
1107 4734 0.678048 GCCGCTCCTGTTTTCTGGAT 60.678 55.000 0.00 0.00 44.76 3.41
1132 4762 3.497405 GGTTCCTTAGGGTTTTCGTTCCT 60.497 47.826 0.00 0.00 34.85 3.36
1135 4765 3.136992 TCCTTAGGGTTTTCGTTCCTGTT 59.863 43.478 0.00 0.00 32.46 3.16
1243 4883 1.451028 GGGCTGCTAGGAGCTTGTG 60.451 63.158 31.72 0.00 42.97 3.33
1254 4894 4.361253 GCTTGTGGCGAGTCTGAA 57.639 55.556 0.00 0.00 0.00 3.02
1270 4911 2.482721 TCTGAAAAATTTCCGCGGTCTC 59.517 45.455 27.15 12.14 36.36 3.36
1285 4926 2.743183 CGGTCTCTATTGAAGGGGCTTG 60.743 54.545 0.00 0.00 27.86 4.01
1287 4928 1.212935 TCTCTATTGAAGGGGCTTGCC 59.787 52.381 2.49 2.49 0.00 4.52
1300 4942 4.998400 TTGCCGCTTGCTGCCGTA 62.998 61.111 6.56 0.00 42.00 4.02
1326 5158 3.104843 TCTTGCGGGGATTTGTTTTTG 57.895 42.857 0.00 0.00 0.00 2.44
1417 5263 6.240894 CAAATTATTAGCAGGATCTGGGCTA 58.759 40.000 8.70 8.70 39.01 3.93
1418 5264 5.690464 ATTATTAGCAGGATCTGGGCTAG 57.310 43.478 11.41 0.00 40.81 3.42
1419 5265 1.722034 TTAGCAGGATCTGGGCTAGG 58.278 55.000 0.00 0.00 40.81 3.02
1437 5283 5.706833 GGCTAGGAGTACTATTCTGGTAGAC 59.293 48.000 0.00 0.00 0.00 2.59
1542 5388 7.506114 AGCACGGATACTCCTAATTTAAATCA 58.494 34.615 0.10 0.00 33.30 2.57
1587 5433 3.134574 TGGAGTTAATTCCAGCGTTGT 57.865 42.857 15.26 0.00 42.24 3.32
1685 5541 3.068560 TCAACACGGTATTAACTGGTGC 58.931 45.455 0.00 0.00 36.19 5.01
1878 5735 9.793252 ATTCTGCTATATTGCTAAAAGTTGTTG 57.207 29.630 10.48 0.00 0.00 3.33
1921 5796 4.976540 AGCAAGGTTCTACTACAGGTTT 57.023 40.909 0.00 0.00 0.00 3.27
2380 6260 5.188327 TCATGGAAGTAGAATAGCTCACG 57.812 43.478 0.00 0.00 0.00 4.35
2386 6266 6.043411 GGAAGTAGAATAGCTCACGACAATT 58.957 40.000 0.00 0.00 0.00 2.32
2401 6330 7.204604 TCACGACAATTTCTAAAGTGTACTCA 58.795 34.615 8.36 0.00 45.85 3.41
2402 6331 7.870954 TCACGACAATTTCTAAAGTGTACTCAT 59.129 33.333 8.36 0.00 45.85 2.90
2403 6332 8.162880 CACGACAATTTCTAAAGTGTACTCATC 58.837 37.037 8.36 0.00 45.85 2.92
2405 6334 8.926710 CGACAATTTCTAAAGTGTACTCATCTT 58.073 33.333 8.36 0.00 45.85 2.40
2453 6382 8.364129 TGTTTTTGCTTCTATTTTGATGTTCC 57.636 30.769 0.00 0.00 0.00 3.62
2497 6426 7.784470 ATTGACATTAGTAGATACTCCCTCC 57.216 40.000 0.00 0.00 37.73 4.30
2498 6427 5.314529 TGACATTAGTAGATACTCCCTCCG 58.685 45.833 0.00 0.00 37.73 4.63
2499 6428 5.163120 TGACATTAGTAGATACTCCCTCCGT 60.163 44.000 0.00 0.00 37.73 4.69
2500 6429 5.315348 ACATTAGTAGATACTCCCTCCGTC 58.685 45.833 0.00 0.00 37.73 4.79
2501 6430 2.955342 AGTAGATACTCCCTCCGTCC 57.045 55.000 0.00 0.00 0.00 4.79
2502 6431 1.072015 AGTAGATACTCCCTCCGTCCG 59.928 57.143 0.00 0.00 0.00 4.79
2503 6432 1.071385 GTAGATACTCCCTCCGTCCGA 59.929 57.143 0.00 0.00 0.00 4.55
2504 6433 0.549950 AGATACTCCCTCCGTCCGAA 59.450 55.000 0.00 0.00 0.00 4.30
2505 6434 1.064166 AGATACTCCCTCCGTCCGAAA 60.064 52.381 0.00 0.00 0.00 3.46
2507 6436 1.856629 TACTCCCTCCGTCCGAAAAT 58.143 50.000 0.00 0.00 0.00 1.82
2509 6438 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
2510 6439 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
2511 6440 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
2512 6441 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
2513 6442 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
2514 6443 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2515 6444 3.581755 CTCCGTCCGAAAATACTTGTCA 58.418 45.455 0.00 0.00 0.00 3.58
2516 6445 4.181578 CTCCGTCCGAAAATACTTGTCAT 58.818 43.478 0.00 0.00 0.00 3.06
2517 6446 4.178540 TCCGTCCGAAAATACTTGTCATC 58.821 43.478 0.00 0.00 0.00 2.92
2518 6447 3.930229 CCGTCCGAAAATACTTGTCATCA 59.070 43.478 0.00 0.00 0.00 3.07
2519 6448 4.390603 CCGTCCGAAAATACTTGTCATCAA 59.609 41.667 0.00 0.00 0.00 2.57
2520 6449 5.106869 CCGTCCGAAAATACTTGTCATCAAA 60.107 40.000 0.00 0.00 32.87 2.69
2521 6450 6.367421 CGTCCGAAAATACTTGTCATCAAAA 58.633 36.000 0.00 0.00 32.87 2.44
2522 6451 7.021196 CGTCCGAAAATACTTGTCATCAAAAT 58.979 34.615 0.00 0.00 32.87 1.82
2523 6452 7.216317 CGTCCGAAAATACTTGTCATCAAAATC 59.784 37.037 0.00 0.00 32.87 2.17
2524 6453 7.216317 GTCCGAAAATACTTGTCATCAAAATCG 59.784 37.037 0.00 0.00 32.87 3.34
2525 6454 7.118535 TCCGAAAATACTTGTCATCAAAATCGA 59.881 33.333 0.00 0.00 32.87 3.59
2526 6455 7.910162 CCGAAAATACTTGTCATCAAAATCGAT 59.090 33.333 0.00 0.00 32.87 3.59
2527 6456 9.914923 CGAAAATACTTGTCATCAAAATCGATA 57.085 29.630 0.00 0.00 32.87 2.92
2533 6462 7.538575 ACTTGTCATCAAAATCGATAAAAGGG 58.461 34.615 0.00 0.00 32.87 3.95
2534 6463 7.393234 ACTTGTCATCAAAATCGATAAAAGGGA 59.607 33.333 0.00 0.00 32.87 4.20
2535 6464 7.083875 TGTCATCAAAATCGATAAAAGGGAC 57.916 36.000 0.00 4.40 0.00 4.46
2536 6465 6.183360 TGTCATCAAAATCGATAAAAGGGACG 60.183 38.462 0.00 0.00 0.00 4.79
2537 6466 5.878116 TCATCAAAATCGATAAAAGGGACGT 59.122 36.000 0.00 0.00 0.00 4.34
2538 6467 7.010738 GTCATCAAAATCGATAAAAGGGACGTA 59.989 37.037 0.00 0.00 0.00 3.57
2539 6468 7.713507 TCATCAAAATCGATAAAAGGGACGTAT 59.286 33.333 0.00 0.00 0.00 3.06
2540 6469 7.473027 TCAAAATCGATAAAAGGGACGTATC 57.527 36.000 0.00 0.00 0.00 2.24
2541 6470 7.270047 TCAAAATCGATAAAAGGGACGTATCT 58.730 34.615 0.00 0.00 0.00 1.98
2542 6471 8.415553 TCAAAATCGATAAAAGGGACGTATCTA 58.584 33.333 0.00 0.00 0.00 1.98
2543 6472 8.700644 CAAAATCGATAAAAGGGACGTATCTAG 58.299 37.037 0.00 0.00 0.00 2.43
2544 6473 7.756395 AATCGATAAAAGGGACGTATCTAGA 57.244 36.000 0.00 0.00 0.00 2.43
2545 6474 7.756395 ATCGATAAAAGGGACGTATCTAGAA 57.244 36.000 0.00 0.00 0.00 2.10
2546 6475 6.963796 TCGATAAAAGGGACGTATCTAGAAC 58.036 40.000 0.00 0.00 0.00 3.01
2547 6476 6.769822 TCGATAAAAGGGACGTATCTAGAACT 59.230 38.462 0.00 0.00 0.00 3.01
2548 6477 7.933577 TCGATAAAAGGGACGTATCTAGAACTA 59.066 37.037 0.00 0.00 0.00 2.24
2549 6478 8.562892 CGATAAAAGGGACGTATCTAGAACTAA 58.437 37.037 0.00 0.00 0.00 2.24
2555 6484 7.869800 AGGGACGTATCTAGAACTAAAATACG 58.130 38.462 21.30 21.30 46.40 3.06
2600 6529 8.915871 ATTCATTTTGATGACAAGTATTTCCG 57.084 30.769 0.00 0.00 37.32 4.30
2601 6530 6.851609 TCATTTTGATGACAAGTATTTCCGG 58.148 36.000 0.00 0.00 37.32 5.14
2602 6531 6.657117 TCATTTTGATGACAAGTATTTCCGGA 59.343 34.615 0.00 0.00 37.32 5.14
2603 6532 5.873179 TTTGATGACAAGTATTTCCGGAC 57.127 39.130 1.83 0.00 37.32 4.79
2604 6533 3.517602 TGATGACAAGTATTTCCGGACG 58.482 45.455 1.83 0.00 0.00 4.79
2605 6534 2.373540 TGACAAGTATTTCCGGACGG 57.626 50.000 1.83 3.96 0.00 4.79
2607 6536 2.094390 TGACAAGTATTTCCGGACGGAG 60.094 50.000 13.64 3.15 46.06 4.63
2611 6540 0.388294 GTATTTCCGGACGGAGGGAG 59.612 60.000 13.64 0.00 46.06 4.30
2617 6546 2.269023 TCCGGACGGAGGGAGTATATA 58.731 52.381 9.76 0.00 39.76 0.86
2663 6592 8.414003 CCACATAGTAGTGATAATGTGTGTACT 58.586 37.037 11.94 0.00 44.90 2.73
2666 6649 9.452065 CATAGTAGTGATAATGTGTGTACTCAC 57.548 37.037 18.83 18.83 44.08 3.51
2668 6651 4.744570 AGTGATAATGTGTGTACTCACCG 58.255 43.478 21.81 0.00 43.26 4.94
2671 6654 5.636121 GTGATAATGTGTGTACTCACCGAAA 59.364 40.000 21.81 6.89 43.26 3.46
2709 6730 5.862323 GTCGTCTGTACACTACACATCAAAT 59.138 40.000 0.00 0.00 34.46 2.32
2734 6756 8.693120 TGTAGAATCTAAGTGTCCCATAGTAG 57.307 38.462 0.00 0.00 0.00 2.57
2739 6761 8.554490 AATCTAAGTGTCCCATAGTAGTGATT 57.446 34.615 0.00 0.00 0.00 2.57
2748 6770 6.204882 GTCCCATAGTAGTGATTATGTTTGGC 59.795 42.308 0.00 0.00 0.00 4.52
2749 6771 5.179368 CCCATAGTAGTGATTATGTTTGGCG 59.821 44.000 0.00 0.00 0.00 5.69
2750 6772 5.179368 CCATAGTAGTGATTATGTTTGGCGG 59.821 44.000 0.00 0.00 0.00 6.13
2751 6773 2.943033 AGTAGTGATTATGTTTGGCGGC 59.057 45.455 0.00 0.00 0.00 6.53
2752 6774 1.832883 AGTGATTATGTTTGGCGGCA 58.167 45.000 7.97 7.97 0.00 5.69
2753 6775 2.378038 AGTGATTATGTTTGGCGGCAT 58.622 42.857 14.32 0.00 0.00 4.40
2754 6776 2.358898 AGTGATTATGTTTGGCGGCATC 59.641 45.455 14.32 10.14 0.00 3.91
2755 6777 2.358898 GTGATTATGTTTGGCGGCATCT 59.641 45.455 14.32 0.06 0.00 2.90
2756 6778 3.563808 GTGATTATGTTTGGCGGCATCTA 59.436 43.478 14.32 1.79 0.00 1.98
2757 6779 3.563808 TGATTATGTTTGGCGGCATCTAC 59.436 43.478 14.32 12.21 0.00 2.59
2758 6780 2.700722 TATGTTTGGCGGCATCTACA 57.299 45.000 14.32 17.54 0.00 2.74
2759 6781 2.057137 ATGTTTGGCGGCATCTACAT 57.943 45.000 21.27 21.27 0.00 2.29
2760 6782 1.378531 TGTTTGGCGGCATCTACATC 58.621 50.000 14.32 0.00 0.00 3.06
2761 6783 1.339535 TGTTTGGCGGCATCTACATCA 60.340 47.619 14.32 0.00 0.00 3.07
2762 6784 1.742831 GTTTGGCGGCATCTACATCAA 59.257 47.619 14.32 0.00 0.00 2.57
2763 6785 1.667236 TTGGCGGCATCTACATCAAG 58.333 50.000 14.32 0.00 0.00 3.02
2764 6786 0.815213 TGGCGGCATCTACATCAAGC 60.815 55.000 7.97 0.00 0.00 4.01
2765 6787 0.815213 GGCGGCATCTACATCAAGCA 60.815 55.000 3.07 0.00 0.00 3.91
2766 6788 0.585357 GCGGCATCTACATCAAGCAG 59.415 55.000 0.00 0.00 0.00 4.24
2767 6789 0.585357 CGGCATCTACATCAAGCAGC 59.415 55.000 0.00 0.00 0.00 5.25
2768 6790 0.950116 GGCATCTACATCAAGCAGCC 59.050 55.000 0.00 0.00 0.00 4.85
2769 6791 0.950116 GCATCTACATCAAGCAGCCC 59.050 55.000 0.00 0.00 0.00 5.19
2770 6792 1.476471 GCATCTACATCAAGCAGCCCT 60.476 52.381 0.00 0.00 0.00 5.19
2771 6793 2.928334 CATCTACATCAAGCAGCCCTT 58.072 47.619 0.00 0.00 0.00 3.95
2783 6805 1.515081 CAGCCCTTGCAAAACAATGG 58.485 50.000 0.00 0.00 44.51 3.16
2784 6806 1.070445 CAGCCCTTGCAAAACAATGGA 59.930 47.619 0.00 0.00 44.48 3.41
2785 6807 1.980036 AGCCCTTGCAAAACAATGGAT 59.020 42.857 0.00 0.00 44.48 3.41
2786 6808 2.078392 GCCCTTGCAAAACAATGGATG 58.922 47.619 0.00 0.00 44.48 3.51
2787 6809 2.550639 GCCCTTGCAAAACAATGGATGT 60.551 45.455 0.00 0.00 44.48 3.06
2788 6810 3.328505 CCCTTGCAAAACAATGGATGTC 58.671 45.455 0.00 0.00 44.48 3.06
2789 6811 2.988493 CCTTGCAAAACAATGGATGTCG 59.012 45.455 0.00 0.00 42.99 4.35
2790 6812 3.552684 CCTTGCAAAACAATGGATGTCGT 60.553 43.478 0.00 0.00 42.99 4.34
2791 6813 4.320861 CCTTGCAAAACAATGGATGTCGTA 60.321 41.667 0.00 0.00 42.99 3.43
2792 6814 5.384063 TTGCAAAACAATGGATGTCGTAT 57.616 34.783 0.00 0.00 42.99 3.06
2793 6815 6.404184 CCTTGCAAAACAATGGATGTCGTATA 60.404 38.462 0.00 0.00 42.99 1.47
2794 6816 6.691754 TGCAAAACAATGGATGTCGTATAT 57.308 33.333 0.00 0.00 42.99 0.86
2795 6817 7.094508 TGCAAAACAATGGATGTCGTATATT 57.905 32.000 0.00 0.00 42.99 1.28
2796 6818 6.971756 TGCAAAACAATGGATGTCGTATATTG 59.028 34.615 0.00 0.00 42.99 1.90
2797 6819 6.972328 GCAAAACAATGGATGTCGTATATTGT 59.028 34.615 0.00 0.00 42.99 2.71
2798 6820 8.126074 GCAAAACAATGGATGTCGTATATTGTA 58.874 33.333 0.00 0.00 42.99 2.41
2799 6821 9.433317 CAAAACAATGGATGTCGTATATTGTAC 57.567 33.333 0.00 0.00 42.99 2.90
2897 6927 5.503662 TTGTCAGTATTGGCTGCATTATG 57.496 39.130 0.50 0.00 36.49 1.90
2913 6943 4.496895 GCATTATGAAACATCAGTCGTTGC 59.503 41.667 0.00 0.00 0.00 4.17
2916 6946 2.560504 TGAAACATCAGTCGTTGCAGT 58.439 42.857 0.00 0.00 28.41 4.40
2917 6947 2.942376 TGAAACATCAGTCGTTGCAGTT 59.058 40.909 0.00 0.00 28.41 3.16
2938 7088 9.083080 GCAGTTTTTAGATTGTTGTGTAAGTTT 57.917 29.630 0.00 0.00 0.00 2.66
2955 7109 7.481798 GTGTAAGTTTGCTTGCTTATGTGATAC 59.518 37.037 0.00 0.00 38.03 2.24
2956 7110 6.824305 AAGTTTGCTTGCTTATGTGATACT 57.176 33.333 0.00 0.00 32.92 2.12
2992 7146 0.178992 CTGCTGGTTGTCCCTTTGGA 60.179 55.000 0.00 0.00 38.75 3.53
3499 7653 5.512921 CCCCAACCATAAAAACATTGAGCTT 60.513 40.000 0.00 0.00 0.00 3.74
3529 7683 2.557924 GTTTGATCAGGTCAACCATGCA 59.442 45.455 0.00 0.00 46.14 3.96
3827 7988 2.120909 GGCCATTCACCCATGGTCG 61.121 63.158 11.73 0.57 45.17 4.79
3872 8033 4.883585 TGTTGATTGATTGGGAGATACTGC 59.116 41.667 0.00 0.00 0.00 4.40
3966 8127 8.904099 ATTATAGGTTTAGTGTATTGCCTGTC 57.096 34.615 0.00 0.00 0.00 3.51
3972 8133 6.640907 GGTTTAGTGTATTGCCTGTCTTTTTG 59.359 38.462 0.00 0.00 0.00 2.44
4048 8209 8.359875 TGGCAAATTTAGTGATTCTATTTCCA 57.640 30.769 0.00 0.00 0.00 3.53
4050 8211 7.436376 GGCAAATTTAGTGATTCTATTTCCAGC 59.564 37.037 0.00 0.00 0.00 4.85
4068 8230 4.404394 TCCAGCGAGTTATAGAATCAACCA 59.596 41.667 0.00 0.00 0.00 3.67
4085 8247 8.463930 AATCAACCAAACTTGAGTATCTTTCA 57.536 30.769 0.00 0.00 33.65 2.69
4088 8250 6.259550 ACCAAACTTGAGTATCTTTCATGC 57.740 37.500 0.00 0.00 34.92 4.06
4130 8292 4.014406 GGACCGAACATCCTTGGTATTTT 58.986 43.478 0.00 0.00 34.12 1.82
4131 8293 4.461431 GGACCGAACATCCTTGGTATTTTT 59.539 41.667 0.00 0.00 34.12 1.94
4167 8369 8.807667 AATTTTTGACAATGAACAAGAGCTAG 57.192 30.769 0.00 0.00 0.00 3.42
4248 8451 3.338249 CAGTCACCATCCAATCTCGTTT 58.662 45.455 0.00 0.00 0.00 3.60
4250 8453 4.935205 CAGTCACCATCCAATCTCGTTTAA 59.065 41.667 0.00 0.00 0.00 1.52
4251 8454 5.063944 CAGTCACCATCCAATCTCGTTTAAG 59.936 44.000 0.00 0.00 0.00 1.85
4253 8456 5.642063 GTCACCATCCAATCTCGTTTAAGAA 59.358 40.000 0.00 0.00 0.00 2.52
4254 8457 5.874810 TCACCATCCAATCTCGTTTAAGAAG 59.125 40.000 0.00 0.00 0.00 2.85
4255 8458 5.874810 CACCATCCAATCTCGTTTAAGAAGA 59.125 40.000 0.00 0.00 0.00 2.87
4256 8459 5.875359 ACCATCCAATCTCGTTTAAGAAGAC 59.125 40.000 0.00 0.00 0.00 3.01
4258 8461 6.595716 CCATCCAATCTCGTTTAAGAAGACTT 59.404 38.462 0.00 0.00 39.81 3.01
4267 8479 8.818057 TCTCGTTTAAGAAGACTTTCAAAAGAG 58.182 33.333 17.24 17.24 39.31 2.85
4269 8481 8.388103 TCGTTTAAGAAGACTTTCAAAAGAGTG 58.612 33.333 9.39 0.00 39.31 3.51
4289 8501 2.645297 TGGATAACCCTAACAGTTGCCA 59.355 45.455 0.00 0.00 33.39 4.92
4405 8620 4.219725 CGTAAATTGTTCCCCTTTGTCCAT 59.780 41.667 0.00 0.00 0.00 3.41
4552 8786 4.081917 AGGTAGCTCAAGAGAACTGCTTAC 60.082 45.833 0.32 0.00 35.47 2.34
4610 8846 7.440523 AACACTGATCAACATTTCTCTAACC 57.559 36.000 0.00 0.00 0.00 2.85
4642 8884 6.095440 ACTTTACACAGCATCCAAATCATACC 59.905 38.462 0.00 0.00 0.00 2.73
4722 8967 3.361174 GCTAGAGCTAGAGCCGGG 58.639 66.667 2.18 0.00 43.38 5.73
4723 8968 1.529713 GCTAGAGCTAGAGCCGGGT 60.530 63.158 5.45 5.45 43.38 5.28
4724 8969 0.250814 GCTAGAGCTAGAGCCGGGTA 60.251 60.000 5.91 0.00 43.38 3.69
4725 8970 1.818522 GCTAGAGCTAGAGCCGGGTAA 60.819 57.143 5.91 0.00 43.38 2.85
4726 8971 2.584236 CTAGAGCTAGAGCCGGGTAAA 58.416 52.381 5.91 0.00 43.38 2.01
4727 8972 1.112950 AGAGCTAGAGCCGGGTAAAC 58.887 55.000 5.91 0.00 43.38 2.01
4728 8973 1.112950 GAGCTAGAGCCGGGTAAACT 58.887 55.000 5.91 1.57 43.38 2.66
4729 8974 1.067364 GAGCTAGAGCCGGGTAAACTC 59.933 57.143 5.91 7.93 43.38 3.01
4730 8975 1.112950 GCTAGAGCCGGGTAAACTCT 58.887 55.000 5.91 10.12 43.12 3.24
4731 8976 1.481363 GCTAGAGCCGGGTAAACTCTT 59.519 52.381 5.91 0.00 41.03 2.85
4732 8977 2.093606 GCTAGAGCCGGGTAAACTCTTT 60.094 50.000 5.91 0.00 41.03 2.52
4733 8978 3.131755 GCTAGAGCCGGGTAAACTCTTTA 59.868 47.826 5.91 0.00 41.03 1.85
4734 8979 3.606595 AGAGCCGGGTAAACTCTTTAC 57.393 47.619 5.91 0.00 43.65 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.104281 GGAAGATAACCACCTACGCCAT 59.896 50.000 0.00 0.00 0.00 4.40
2 3 1.761198 AGGAAGATAACCACCTACGCC 59.239 52.381 0.00 0.00 0.00 5.68
4 5 3.729862 GGAGGAAGATAACCACCTACG 57.270 52.381 0.00 0.00 35.73 3.51
5 6 3.729862 CGGAGGAAGATAACCACCTAC 57.270 52.381 0.00 0.00 36.31 3.18
21 22 1.153168 ATTTCGCCATGGTCCGGAG 60.153 57.895 14.67 0.00 0.00 4.63
22 23 1.153249 GATTTCGCCATGGTCCGGA 60.153 57.895 14.67 0.00 0.00 5.14
23 24 2.534019 CGATTTCGCCATGGTCCGG 61.534 63.158 14.67 0.00 0.00 5.14
24 25 2.534019 CCGATTTCGCCATGGTCCG 61.534 63.158 14.67 9.64 38.18 4.79
25 26 1.153249 TCCGATTTCGCCATGGTCC 60.153 57.895 14.67 0.00 38.18 4.46
26 27 0.179084 TCTCCGATTTCGCCATGGTC 60.179 55.000 14.67 4.79 38.18 4.02
27 28 0.179073 CTCTCCGATTTCGCCATGGT 60.179 55.000 14.67 0.00 38.18 3.55
28 29 1.502163 GCTCTCCGATTTCGCCATGG 61.502 60.000 7.63 7.63 38.18 3.66
29 30 1.825285 CGCTCTCCGATTTCGCCATG 61.825 60.000 0.00 0.00 40.02 3.66
30 31 1.592669 CGCTCTCCGATTTCGCCAT 60.593 57.895 0.00 0.00 40.02 4.40
31 32 2.202743 CGCTCTCCGATTTCGCCA 60.203 61.111 0.00 0.00 40.02 5.69
32 33 2.202756 ACGCTCTCCGATTTCGCC 60.203 61.111 0.00 0.00 41.02 5.54
33 34 2.517450 CCACGCTCTCCGATTTCGC 61.517 63.158 0.00 0.00 41.02 4.70
34 35 1.878522 CCCACGCTCTCCGATTTCG 60.879 63.158 0.00 0.00 41.02 3.46
35 36 0.108329 TTCCCACGCTCTCCGATTTC 60.108 55.000 0.00 0.00 41.02 2.17
36 37 0.108138 CTTCCCACGCTCTCCGATTT 60.108 55.000 0.00 0.00 41.02 2.17
37 38 0.970937 TCTTCCCACGCTCTCCGATT 60.971 55.000 0.00 0.00 41.02 3.34
38 39 1.379977 TCTTCCCACGCTCTCCGAT 60.380 57.895 0.00 0.00 41.02 4.18
39 40 2.035155 TCTTCCCACGCTCTCCGA 59.965 61.111 0.00 0.00 41.02 4.55
40 41 2.492090 CTCTTCCCACGCTCTCCG 59.508 66.667 0.00 0.00 44.21 4.63
41 42 2.726351 CCCTCTTCCCACGCTCTCC 61.726 68.421 0.00 0.00 0.00 3.71
42 43 2.896443 CCCTCTTCCCACGCTCTC 59.104 66.667 0.00 0.00 0.00 3.20
43 44 3.394836 GCCCTCTTCCCACGCTCT 61.395 66.667 0.00 0.00 0.00 4.09
44 45 4.475135 GGCCCTCTTCCCACGCTC 62.475 72.222 0.00 0.00 0.00 5.03
46 47 4.785453 CTGGCCCTCTTCCCACGC 62.785 72.222 0.00 0.00 0.00 5.34
47 48 3.003173 TCTGGCCCTCTTCCCACG 61.003 66.667 0.00 0.00 0.00 4.94
48 49 1.613630 TCTCTGGCCCTCTTCCCAC 60.614 63.158 0.00 0.00 0.00 4.61
49 50 1.306482 CTCTCTGGCCCTCTTCCCA 60.306 63.158 0.00 0.00 0.00 4.37
50 51 1.002274 TCTCTCTGGCCCTCTTCCC 59.998 63.158 0.00 0.00 0.00 3.97
51 52 0.032615 TCTCTCTCTGGCCCTCTTCC 60.033 60.000 0.00 0.00 0.00 3.46
52 53 1.402787 CTCTCTCTCTGGCCCTCTTC 58.597 60.000 0.00 0.00 0.00 2.87
53 54 0.032217 CCTCTCTCTCTGGCCCTCTT 60.032 60.000 0.00 0.00 0.00 2.85
54 55 1.620259 CCTCTCTCTCTGGCCCTCT 59.380 63.158 0.00 0.00 0.00 3.69
55 56 1.457455 CCCTCTCTCTCTGGCCCTC 60.457 68.421 0.00 0.00 0.00 4.30
56 57 1.938596 TCCCTCTCTCTCTGGCCCT 60.939 63.158 0.00 0.00 0.00 5.19
57 58 1.457455 CTCCCTCTCTCTCTGGCCC 60.457 68.421 0.00 0.00 0.00 5.80
58 59 0.468029 CTCTCCCTCTCTCTCTGGCC 60.468 65.000 0.00 0.00 0.00 5.36
59 60 0.550914 TCTCTCCCTCTCTCTCTGGC 59.449 60.000 0.00 0.00 0.00 4.85
60 61 2.105477 CTCTCTCTCCCTCTCTCTCTGG 59.895 59.091 0.00 0.00 0.00 3.86
61 62 3.041211 TCTCTCTCTCCCTCTCTCTCTG 58.959 54.545 0.00 0.00 0.00 3.35
62 63 3.051803 TCTCTCTCTCTCCCTCTCTCTCT 60.052 52.174 0.00 0.00 0.00 3.10
63 64 3.309296 TCTCTCTCTCTCCCTCTCTCTC 58.691 54.545 0.00 0.00 0.00 3.20
64 65 3.421394 TCTCTCTCTCTCCCTCTCTCT 57.579 52.381 0.00 0.00 0.00 3.10
65 66 4.164221 TCTTTCTCTCTCTCTCCCTCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
66 67 4.111577 TCTTTCTCTCTCTCTCCCTCTCT 58.888 47.826 0.00 0.00 0.00 3.10
67 68 4.164221 TCTCTTTCTCTCTCTCTCCCTCTC 59.836 50.000 0.00 0.00 0.00 3.20
68 69 4.111577 TCTCTTTCTCTCTCTCTCCCTCT 58.888 47.826 0.00 0.00 0.00 3.69
69 70 4.503714 TCTCTTTCTCTCTCTCTCCCTC 57.496 50.000 0.00 0.00 0.00 4.30
70 71 4.946160 TTCTCTTTCTCTCTCTCTCCCT 57.054 45.455 0.00 0.00 0.00 4.20
71 72 5.261216 TCTTTCTCTTTCTCTCTCTCTCCC 58.739 45.833 0.00 0.00 0.00 4.30
72 73 6.180472 TCTCTTTCTCTTTCTCTCTCTCTCC 58.820 44.000 0.00 0.00 0.00 3.71
73 74 7.106239 TCTCTCTTTCTCTTTCTCTCTCTCTC 58.894 42.308 0.00 0.00 0.00 3.20
74 75 7.020827 TCTCTCTTTCTCTTTCTCTCTCTCT 57.979 40.000 0.00 0.00 0.00 3.10
75 76 7.106239 TCTCTCTCTTTCTCTTTCTCTCTCTC 58.894 42.308 0.00 0.00 0.00 3.20
76 77 7.020827 TCTCTCTCTTTCTCTTTCTCTCTCT 57.979 40.000 0.00 0.00 0.00 3.10
77 78 7.687941 TTCTCTCTCTTTCTCTTTCTCTCTC 57.312 40.000 0.00 0.00 0.00 3.20
78 79 7.944554 TCTTTCTCTCTCTTTCTCTTTCTCTCT 59.055 37.037 0.00 0.00 0.00 3.10
79 80 8.110860 TCTTTCTCTCTCTTTCTCTTTCTCTC 57.889 38.462 0.00 0.00 0.00 3.20
80 81 8.477419 TTCTTTCTCTCTCTTTCTCTTTCTCT 57.523 34.615 0.00 0.00 0.00 3.10
81 82 9.196552 CTTTCTTTCTCTCTCTTTCTCTTTCTC 57.803 37.037 0.00 0.00 0.00 2.87
82 83 8.923270 TCTTTCTTTCTCTCTCTTTCTCTTTCT 58.077 33.333 0.00 0.00 0.00 2.52
83 84 9.196552 CTCTTTCTTTCTCTCTCTTTCTCTTTC 57.803 37.037 0.00 0.00 0.00 2.62
84 85 8.923270 TCTCTTTCTTTCTCTCTCTTTCTCTTT 58.077 33.333 0.00 0.00 0.00 2.52
85 86 8.477419 TCTCTTTCTTTCTCTCTCTTTCTCTT 57.523 34.615 0.00 0.00 0.00 2.85
86 87 8.477419 TTCTCTTTCTTTCTCTCTCTTTCTCT 57.523 34.615 0.00 0.00 0.00 3.10
87 88 9.196552 CTTTCTCTTTCTTTCTCTCTCTTTCTC 57.803 37.037 0.00 0.00 0.00 2.87
88 89 8.923270 TCTTTCTCTTTCTTTCTCTCTCTTTCT 58.077 33.333 0.00 0.00 0.00 2.52
89 90 9.196552 CTCTTTCTCTTTCTTTCTCTCTCTTTC 57.803 37.037 0.00 0.00 0.00 2.62
90 91 8.923270 TCTCTTTCTCTTTCTTTCTCTCTCTTT 58.077 33.333 0.00 0.00 0.00 2.52
91 92 8.477419 TCTCTTTCTCTTTCTTTCTCTCTCTT 57.523 34.615 0.00 0.00 0.00 2.85
92 93 7.944554 TCTCTCTTTCTCTTTCTTTCTCTCTCT 59.055 37.037 0.00 0.00 0.00 3.10
93 94 8.110860 TCTCTCTTTCTCTTTCTTTCTCTCTC 57.889 38.462 0.00 0.00 0.00 3.20
94 95 7.177392 CCTCTCTCTTTCTCTTTCTTTCTCTCT 59.823 40.741 0.00 0.00 0.00 3.10
95 96 7.176690 TCCTCTCTCTTTCTCTTTCTTTCTCTC 59.823 40.741 0.00 0.00 0.00 3.20
96 97 7.010160 TCCTCTCTCTTTCTCTTTCTTTCTCT 58.990 38.462 0.00 0.00 0.00 3.10
97 98 7.227049 TCCTCTCTCTTTCTCTTTCTTTCTC 57.773 40.000 0.00 0.00 0.00 2.87
98 99 6.211384 CCTCCTCTCTCTTTCTCTTTCTTTCT 59.789 42.308 0.00 0.00 0.00 2.52
99 100 6.398095 CCTCCTCTCTCTTTCTCTTTCTTTC 58.602 44.000 0.00 0.00 0.00 2.62
100 101 5.279960 GCCTCCTCTCTCTTTCTCTTTCTTT 60.280 44.000 0.00 0.00 0.00 2.52
101 102 4.222810 GCCTCCTCTCTCTTTCTCTTTCTT 59.777 45.833 0.00 0.00 0.00 2.52
102 103 3.769300 GCCTCCTCTCTCTTTCTCTTTCT 59.231 47.826 0.00 0.00 0.00 2.52
103 104 3.428862 CGCCTCCTCTCTCTTTCTCTTTC 60.429 52.174 0.00 0.00 0.00 2.62
104 105 2.495669 CGCCTCCTCTCTCTTTCTCTTT 59.504 50.000 0.00 0.00 0.00 2.52
105 106 2.099405 CGCCTCCTCTCTCTTTCTCTT 58.901 52.381 0.00 0.00 0.00 2.85
106 107 1.684869 CCGCCTCCTCTCTCTTTCTCT 60.685 57.143 0.00 0.00 0.00 3.10
107 108 0.744281 CCGCCTCCTCTCTCTTTCTC 59.256 60.000 0.00 0.00 0.00 2.87
108 109 0.333312 TCCGCCTCCTCTCTCTTTCT 59.667 55.000 0.00 0.00 0.00 2.52
109 110 1.068434 CATCCGCCTCCTCTCTCTTTC 59.932 57.143 0.00 0.00 0.00 2.62
110 111 1.118838 CATCCGCCTCCTCTCTCTTT 58.881 55.000 0.00 0.00 0.00 2.52
111 112 0.758685 CCATCCGCCTCCTCTCTCTT 60.759 60.000 0.00 0.00 0.00 2.85
112 113 1.152567 CCATCCGCCTCCTCTCTCT 60.153 63.158 0.00 0.00 0.00 3.10
113 114 2.206536 CCCATCCGCCTCCTCTCTC 61.207 68.421 0.00 0.00 0.00 3.20
114 115 2.123077 CCCATCCGCCTCCTCTCT 60.123 66.667 0.00 0.00 0.00 3.10
115 116 3.934962 GCCCATCCGCCTCCTCTC 61.935 72.222 0.00 0.00 0.00 3.20
116 117 4.488911 AGCCCATCCGCCTCCTCT 62.489 66.667 0.00 0.00 0.00 3.69
117 118 3.934962 GAGCCCATCCGCCTCCTC 61.935 72.222 0.00 0.00 0.00 3.71
120 121 4.292178 CTCGAGCCCATCCGCCTC 62.292 72.222 0.00 0.00 0.00 4.70
123 124 3.565910 CTAGCTCGAGCCCATCCGC 62.566 68.421 32.94 7.40 43.38 5.54
124 125 2.196925 ACTAGCTCGAGCCCATCCG 61.197 63.158 32.94 16.82 43.38 4.18
125 126 1.365633 CACTAGCTCGAGCCCATCC 59.634 63.158 32.94 5.52 43.38 3.51
126 127 1.365633 CCACTAGCTCGAGCCCATC 59.634 63.158 32.94 6.32 43.38 3.51
127 128 2.801631 GCCACTAGCTCGAGCCCAT 61.802 63.158 32.94 18.00 43.38 4.00
128 129 3.461773 GCCACTAGCTCGAGCCCA 61.462 66.667 32.94 20.30 43.38 5.36
129 130 3.461773 TGCCACTAGCTCGAGCCC 61.462 66.667 32.94 14.88 44.23 5.19
130 131 2.202810 GTGCCACTAGCTCGAGCC 60.203 66.667 32.94 17.25 44.23 4.70
131 132 1.518133 CTGTGCCACTAGCTCGAGC 60.518 63.158 30.01 30.01 44.23 5.03
132 133 0.457509 CACTGTGCCACTAGCTCGAG 60.458 60.000 8.45 8.45 44.23 4.04
133 134 0.893727 TCACTGTGCCACTAGCTCGA 60.894 55.000 2.12 0.00 44.23 4.04
134 135 0.457509 CTCACTGTGCCACTAGCTCG 60.458 60.000 2.12 0.00 44.23 5.03
135 136 0.108424 CCTCACTGTGCCACTAGCTC 60.108 60.000 2.12 0.00 44.23 4.09
136 137 0.542938 TCCTCACTGTGCCACTAGCT 60.543 55.000 2.12 0.00 44.23 3.32
137 138 0.321671 TTCCTCACTGTGCCACTAGC 59.678 55.000 2.12 0.00 44.14 3.42
138 139 1.066573 CCTTCCTCACTGTGCCACTAG 60.067 57.143 2.12 0.00 0.00 2.57
139 140 0.976641 CCTTCCTCACTGTGCCACTA 59.023 55.000 2.12 0.00 0.00 2.74
140 141 0.764369 TCCTTCCTCACTGTGCCACT 60.764 55.000 2.12 0.00 0.00 4.00
141 142 0.108585 TTCCTTCCTCACTGTGCCAC 59.891 55.000 2.12 0.00 0.00 5.01
142 143 0.397941 CTTCCTTCCTCACTGTGCCA 59.602 55.000 2.12 0.00 0.00 4.92
143 144 0.398318 ACTTCCTTCCTCACTGTGCC 59.602 55.000 2.12 0.00 0.00 5.01
144 145 1.517242 CACTTCCTTCCTCACTGTGC 58.483 55.000 2.12 0.00 0.00 4.57
145 146 1.694150 TCCACTTCCTTCCTCACTGTG 59.306 52.381 0.17 0.17 0.00 3.66
146 147 2.103153 TCCACTTCCTTCCTCACTGT 57.897 50.000 0.00 0.00 0.00 3.55
147 148 3.133721 CCTATCCACTTCCTTCCTCACTG 59.866 52.174 0.00 0.00 0.00 3.66
148 149 3.379452 CCTATCCACTTCCTTCCTCACT 58.621 50.000 0.00 0.00 0.00 3.41
149 150 2.158885 GCCTATCCACTTCCTTCCTCAC 60.159 54.545 0.00 0.00 0.00 3.51
150 151 2.119495 GCCTATCCACTTCCTTCCTCA 58.881 52.381 0.00 0.00 0.00 3.86
151 152 2.403561 AGCCTATCCACTTCCTTCCTC 58.596 52.381 0.00 0.00 0.00 3.71
152 153 2.577772 AGCCTATCCACTTCCTTCCT 57.422 50.000 0.00 0.00 0.00 3.36
153 154 2.635427 CCTAGCCTATCCACTTCCTTCC 59.365 54.545 0.00 0.00 0.00 3.46
154 155 2.635427 CCCTAGCCTATCCACTTCCTTC 59.365 54.545 0.00 0.00 0.00 3.46
155 156 2.021936 ACCCTAGCCTATCCACTTCCTT 60.022 50.000 0.00 0.00 0.00 3.36
156 157 1.581149 ACCCTAGCCTATCCACTTCCT 59.419 52.381 0.00 0.00 0.00 3.36
157 158 1.972075 GACCCTAGCCTATCCACTTCC 59.028 57.143 0.00 0.00 0.00 3.46
158 159 1.614413 CGACCCTAGCCTATCCACTTC 59.386 57.143 0.00 0.00 0.00 3.01
159 160 1.705873 CGACCCTAGCCTATCCACTT 58.294 55.000 0.00 0.00 0.00 3.16
160 161 0.178958 CCGACCCTAGCCTATCCACT 60.179 60.000 0.00 0.00 0.00 4.00
161 162 1.186267 CCCGACCCTAGCCTATCCAC 61.186 65.000 0.00 0.00 0.00 4.02
162 163 1.155390 CCCGACCCTAGCCTATCCA 59.845 63.158 0.00 0.00 0.00 3.41
163 164 1.609794 CCCCGACCCTAGCCTATCC 60.610 68.421 0.00 0.00 0.00 2.59
164 165 1.609794 CCCCCGACCCTAGCCTATC 60.610 68.421 0.00 0.00 0.00 2.08
165 166 2.095784 TCCCCCGACCCTAGCCTAT 61.096 63.158 0.00 0.00 0.00 2.57
166 167 2.701093 TCCCCCGACCCTAGCCTA 60.701 66.667 0.00 0.00 0.00 3.93
167 168 4.477119 GTCCCCCGACCCTAGCCT 62.477 72.222 0.00 0.00 32.40 4.58
170 171 2.832201 GACGTCCCCCGACCCTAG 60.832 72.222 3.51 0.00 40.70 3.02
171 172 4.802051 CGACGTCCCCCGACCCTA 62.802 72.222 10.58 0.00 40.70 3.53
180 181 2.490993 TTTAAGCCGACCGACGTCCC 62.491 60.000 10.58 0.00 40.78 4.46
181 182 0.459063 ATTTAAGCCGACCGACGTCC 60.459 55.000 10.58 0.00 40.78 4.79
182 183 2.114825 CTATTTAAGCCGACCGACGTC 58.885 52.381 5.18 5.18 40.78 4.34
183 184 1.800286 GCTATTTAAGCCGACCGACGT 60.800 52.381 0.00 0.00 46.25 4.34
184 185 0.850856 GCTATTTAAGCCGACCGACG 59.149 55.000 0.00 0.00 46.25 5.12
203 204 3.460868 GCCCAAGGCCAAATCCGG 61.461 66.667 5.01 0.00 44.06 5.14
256 257 4.065281 AAACGTCTCCTCCGGCGG 62.065 66.667 22.51 22.51 0.00 6.13
257 258 2.809601 CAAACGTCTCCTCCGGCG 60.810 66.667 0.00 0.00 0.00 6.46
258 259 1.737008 GACAAACGTCTCCTCCGGC 60.737 63.158 0.00 0.00 0.00 6.13
259 260 0.032952 TTGACAAACGTCTCCTCCGG 59.967 55.000 0.00 0.00 34.31 5.14
260 261 1.525619 GTTTGACAAACGTCTCCTCCG 59.474 52.381 14.94 0.00 34.31 4.63
261 262 1.871676 GGTTTGACAAACGTCTCCTCC 59.128 52.381 21.61 4.84 42.29 4.30
262 263 1.525619 CGGTTTGACAAACGTCTCCTC 59.474 52.381 21.61 7.78 42.29 3.71
263 264 1.134610 ACGGTTTGACAAACGTCTCCT 60.135 47.619 21.61 2.33 42.29 3.69
264 265 1.292992 ACGGTTTGACAAACGTCTCC 58.707 50.000 21.61 9.21 42.29 3.71
265 266 2.538132 CCAACGGTTTGACAAACGTCTC 60.538 50.000 21.61 9.34 42.29 3.36
266 267 1.399089 CCAACGGTTTGACAAACGTCT 59.601 47.619 21.61 7.97 42.29 4.18
267 268 1.532298 CCCAACGGTTTGACAAACGTC 60.532 52.381 21.61 10.28 42.29 4.34
268 269 0.452585 CCCAACGGTTTGACAAACGT 59.547 50.000 21.61 19.14 42.29 3.99
269 270 0.452585 ACCCAACGGTTTGACAAACG 59.547 50.000 21.61 18.61 40.58 3.60
280 281 2.785713 ATCGTTCAAAAACCCAACGG 57.214 45.000 3.82 0.00 42.50 4.44
281 282 3.047093 GGAATCGTTCAAAAACCCAACG 58.953 45.455 0.00 0.00 43.38 4.10
282 283 3.047093 CGGAATCGTTCAAAAACCCAAC 58.953 45.455 1.25 0.00 31.27 3.77
283 284 2.544069 GCGGAATCGTTCAAAAACCCAA 60.544 45.455 0.00 0.00 38.89 4.12
284 285 1.001158 GCGGAATCGTTCAAAAACCCA 60.001 47.619 0.00 0.00 38.89 4.51
285 286 1.693467 GCGGAATCGTTCAAAAACCC 58.307 50.000 0.00 0.00 38.89 4.11
286 287 1.323791 CGCGGAATCGTTCAAAAACC 58.676 50.000 0.00 0.00 38.89 3.27
287 288 1.706597 CACGCGGAATCGTTCAAAAAC 59.293 47.619 12.47 0.00 41.21 2.43
288 289 1.334239 CCACGCGGAATCGTTCAAAAA 60.334 47.619 12.47 0.00 41.21 1.94
289 290 0.236187 CCACGCGGAATCGTTCAAAA 59.764 50.000 12.47 0.00 41.21 2.44
290 291 1.570347 CCCACGCGGAATCGTTCAAA 61.570 55.000 12.47 0.00 41.21 2.69
291 292 2.030401 CCCACGCGGAATCGTTCAA 61.030 57.895 12.47 0.00 41.21 2.69
292 293 2.433491 CCCACGCGGAATCGTTCA 60.433 61.111 12.47 0.00 41.21 3.18
293 294 2.125832 TCCCACGCGGAATCGTTC 60.126 61.111 12.47 0.00 41.21 3.95
294 295 2.433664 GTCCCACGCGGAATCGTT 60.434 61.111 12.47 0.00 44.47 3.85
295 296 4.446413 GGTCCCACGCGGAATCGT 62.446 66.667 12.47 0.00 44.47 3.73
297 298 3.782443 AGGGTCCCACGCGGAATC 61.782 66.667 12.47 0.00 44.47 2.52
298 299 4.096003 CAGGGTCCCACGCGGAAT 62.096 66.667 12.47 0.00 44.47 3.01
305 306 3.268103 ATTGGCGTCAGGGTCCCAC 62.268 63.158 11.55 0.00 0.00 4.61
306 307 2.933287 ATTGGCGTCAGGGTCCCA 60.933 61.111 11.55 0.00 0.00 4.37
307 308 2.124695 GATTGGCGTCAGGGTCCC 60.125 66.667 0.00 0.00 0.00 4.46
308 309 2.124695 GGATTGGCGTCAGGGTCC 60.125 66.667 2.99 2.99 0.00 4.46
309 310 2.311688 ATCGGATTGGCGTCAGGGTC 62.312 60.000 0.00 0.00 0.00 4.46
310 311 2.367202 ATCGGATTGGCGTCAGGGT 61.367 57.895 0.00 0.00 0.00 4.34
311 312 1.889105 CATCGGATTGGCGTCAGGG 60.889 63.158 0.00 0.00 0.00 4.45
312 313 1.153369 ACATCGGATTGGCGTCAGG 60.153 57.895 0.00 0.00 0.00 3.86
313 314 0.740868 ACACATCGGATTGGCGTCAG 60.741 55.000 0.00 0.00 0.00 3.51
314 315 1.018752 CACACATCGGATTGGCGTCA 61.019 55.000 0.00 0.00 0.00 4.35
315 316 1.715585 CACACATCGGATTGGCGTC 59.284 57.895 0.00 0.00 0.00 5.19
316 317 2.398554 GCACACATCGGATTGGCGT 61.399 57.895 0.00 0.00 0.00 5.68
317 318 2.404789 GCACACATCGGATTGGCG 59.595 61.111 0.00 0.00 0.00 5.69
318 319 2.404789 CGCACACATCGGATTGGC 59.595 61.111 0.00 0.00 0.00 4.52
342 343 0.526662 GTAGATATGAGCCGTCCGGG 59.473 60.000 7.97 0.00 39.58 5.73
343 344 0.526662 GGTAGATATGAGCCGTCCGG 59.473 60.000 0.24 0.24 38.57 5.14
344 345 0.526662 GGGTAGATATGAGCCGTCCG 59.473 60.000 0.00 0.00 0.00 4.79
345 346 0.896226 GGGGTAGATATGAGCCGTCC 59.104 60.000 0.00 0.00 35.18 4.79
346 347 1.629043 TGGGGTAGATATGAGCCGTC 58.371 55.000 0.00 0.00 35.18 4.79
347 348 2.327325 ATGGGGTAGATATGAGCCGT 57.673 50.000 0.00 0.00 35.18 5.68
348 349 5.359194 AATTATGGGGTAGATATGAGCCG 57.641 43.478 0.00 0.00 35.18 5.52
349 350 7.862675 ACTTAATTATGGGGTAGATATGAGCC 58.137 38.462 3.66 0.00 0.00 4.70
350 351 9.167311 CAACTTAATTATGGGGTAGATATGAGC 57.833 37.037 3.66 0.00 0.00 4.26
351 352 9.672673 CCAACTTAATTATGGGGTAGATATGAG 57.327 37.037 3.66 0.00 0.00 2.90
352 353 9.400208 TCCAACTTAATTATGGGGTAGATATGA 57.600 33.333 4.18 0.00 34.89 2.15
357 358 9.400208 TCATATCCAACTTAATTATGGGGTAGA 57.600 33.333 4.18 0.00 34.89 2.59
358 359 9.672673 CTCATATCCAACTTAATTATGGGGTAG 57.327 37.037 4.18 0.00 34.89 3.18
359 360 8.611257 CCTCATATCCAACTTAATTATGGGGTA 58.389 37.037 4.18 0.00 34.89 3.69
360 361 7.470192 CCTCATATCCAACTTAATTATGGGGT 58.530 38.462 4.18 0.00 34.89 4.95
361 362 6.891908 CCCTCATATCCAACTTAATTATGGGG 59.108 42.308 4.18 0.00 34.70 4.96
362 363 6.891908 CCCCTCATATCCAACTTAATTATGGG 59.108 42.308 4.18 0.00 34.89 4.00
363 364 7.394359 CACCCCTCATATCCAACTTAATTATGG 59.606 40.741 3.66 0.86 35.49 2.74
364 365 7.944554 ACACCCCTCATATCCAACTTAATTATG 59.055 37.037 0.00 0.00 0.00 1.90
365 366 8.057246 ACACCCCTCATATCCAACTTAATTAT 57.943 34.615 0.00 0.00 0.00 1.28
366 367 7.460214 ACACCCCTCATATCCAACTTAATTA 57.540 36.000 0.00 0.00 0.00 1.40
367 368 6.341408 ACACCCCTCATATCCAACTTAATT 57.659 37.500 0.00 0.00 0.00 1.40
368 369 5.454755 CGACACCCCTCATATCCAACTTAAT 60.455 44.000 0.00 0.00 0.00 1.40
369 370 4.141801 CGACACCCCTCATATCCAACTTAA 60.142 45.833 0.00 0.00 0.00 1.85
370 371 3.386726 CGACACCCCTCATATCCAACTTA 59.613 47.826 0.00 0.00 0.00 2.24
371 372 2.170607 CGACACCCCTCATATCCAACTT 59.829 50.000 0.00 0.00 0.00 2.66
372 373 1.762957 CGACACCCCTCATATCCAACT 59.237 52.381 0.00 0.00 0.00 3.16
373 374 1.202651 CCGACACCCCTCATATCCAAC 60.203 57.143 0.00 0.00 0.00 3.77
374 375 1.128200 CCGACACCCCTCATATCCAA 58.872 55.000 0.00 0.00 0.00 3.53
375 376 0.031515 ACCGACACCCCTCATATCCA 60.032 55.000 0.00 0.00 0.00 3.41
376 377 0.680061 GACCGACACCCCTCATATCC 59.320 60.000 0.00 0.00 0.00 2.59
390 391 0.669318 CAAACGCTTAGGCTGACCGA 60.669 55.000 0.00 0.00 42.76 4.69
393 394 0.444260 GCTCAAACGCTTAGGCTGAC 59.556 55.000 0.00 0.00 36.09 3.51
396 397 1.377333 GGGCTCAAACGCTTAGGCT 60.377 57.895 0.00 0.00 36.17 4.58
397 398 2.407428 GGGGCTCAAACGCTTAGGC 61.407 63.158 0.00 0.00 35.21 3.93
400 401 1.917872 AAATGGGGCTCAAACGCTTA 58.082 45.000 0.00 0.00 0.00 3.09
402 403 1.818674 CTTAAATGGGGCTCAAACGCT 59.181 47.619 0.00 0.00 0.00 5.07
415 416 1.061131 CTCACACGAGCGCCTTAAATG 59.939 52.381 2.29 0.00 31.00 2.32
416 417 1.337823 ACTCACACGAGCGCCTTAAAT 60.338 47.619 2.29 0.00 43.66 1.40
420 421 2.049063 GACTCACACGAGCGCCTT 60.049 61.111 2.29 0.00 43.66 4.35
438 439 0.168128 CAGCCCGGTCACGAAATTTC 59.832 55.000 8.20 8.20 44.60 2.17
439 440 1.862602 GCAGCCCGGTCACGAAATTT 61.863 55.000 0.00 0.00 44.60 1.82
440 441 2.332654 GCAGCCCGGTCACGAAATT 61.333 57.895 0.00 0.00 44.60 1.82
441 442 2.746277 GCAGCCCGGTCACGAAAT 60.746 61.111 0.00 0.00 44.60 2.17
468 469 1.659794 CCCAAACTGGCCTCAAACG 59.340 57.895 3.32 0.00 35.79 3.60
472 473 4.659172 CGCCCCAAACTGGCCTCA 62.659 66.667 3.32 0.00 46.48 3.86
493 494 2.315925 TAGTTAGAGCACATGCAGCC 57.684 50.000 6.64 0.29 45.16 4.85
577 1987 7.930325 AGCCTCCCGTATAACTTTAATCTTAAC 59.070 37.037 0.00 0.00 0.00 2.01
625 3042 0.975556 TCGTAGCATGGGAGCTGGAA 60.976 55.000 0.00 0.00 46.11 3.53
714 3131 4.466015 TGGAGCCAGTTTTTGTCTCTTTTT 59.534 37.500 0.00 0.00 0.00 1.94
767 3184 3.811083 TGGTAAGAGATCTCGAGGAGTC 58.189 50.000 16.97 8.78 34.09 3.36
887 4476 5.475909 GTCGGTATAGAGAGAGAGAGAGAGA 59.524 48.000 0.00 0.00 0.00 3.10
888 4477 5.619309 CGTCGGTATAGAGAGAGAGAGAGAG 60.619 52.000 0.00 0.00 0.00 3.20
889 4478 4.216902 CGTCGGTATAGAGAGAGAGAGAGA 59.783 50.000 0.00 0.00 0.00 3.10
1091 4695 1.467920 CCCATCCAGAAAACAGGAGC 58.532 55.000 0.00 0.00 37.34 4.70
1098 4705 3.011257 CCTAAGGAACCCCATCCAGAAAA 59.989 47.826 0.00 0.00 42.27 2.29
1107 4734 1.074244 CGAAAACCCTAAGGAACCCCA 59.926 52.381 0.00 0.00 36.73 4.96
1132 4762 0.322456 CCAGATCCGGCAAAGGAACA 60.322 55.000 0.00 0.00 44.50 3.18
1135 4765 1.204786 TTCCCAGATCCGGCAAAGGA 61.205 55.000 0.00 0.00 45.54 3.36
1192 4830 0.316841 CCCATCCACCAACCAAAACG 59.683 55.000 0.00 0.00 0.00 3.60
1243 4883 2.851534 CGGAAATTTTTCAGACTCGCC 58.148 47.619 5.48 0.00 38.92 5.54
1249 4889 2.482721 GAGACCGCGGAAATTTTTCAGA 59.517 45.455 35.90 0.00 38.92 3.27
1253 4893 4.698304 TCAATAGAGACCGCGGAAATTTTT 59.302 37.500 35.90 15.30 0.00 1.94
1254 4894 4.258543 TCAATAGAGACCGCGGAAATTTT 58.741 39.130 35.90 14.76 0.00 1.82
1270 4911 1.728490 GCGGCAAGCCCCTTCAATAG 61.728 60.000 5.34 0.00 40.81 1.73
1285 4926 2.587753 TATACGGCAGCAAGCGGC 60.588 61.111 8.69 8.69 46.53 6.53
1300 4942 2.025321 ACAAATCCCCGCAAGAACCTAT 60.025 45.455 0.00 0.00 43.02 2.57
1417 5263 5.432390 TCCTGTCTACCAGAATAGTACTCCT 59.568 44.000 0.00 0.00 44.49 3.69
1418 5264 5.692928 TCCTGTCTACCAGAATAGTACTCC 58.307 45.833 0.00 0.00 44.49 3.85
1419 5265 6.431852 GGATCCTGTCTACCAGAATAGTACTC 59.568 46.154 3.84 0.00 44.49 2.59
1437 5283 7.693969 ACAGAACATTTAAGAAAGGATCCTG 57.306 36.000 17.02 2.34 0.00 3.86
1587 5433 8.909708 GCACAGAGCATATTGTAATAAAAACA 57.090 30.769 0.00 0.00 44.79 2.83
1622 5478 9.983804 GGCACTTGTAAGAAAACATATACTAAC 57.016 33.333 0.00 0.00 0.00 2.34
1862 5719 6.282930 AGCATCAACAACAACTTTTAGCAAT 58.717 32.000 0.00 0.00 0.00 3.56
1872 5729 4.616802 CCATTCGTTAGCATCAACAACAAC 59.383 41.667 0.00 0.00 0.00 3.32
1878 5735 3.006940 TGACCCATTCGTTAGCATCAAC 58.993 45.455 0.00 0.00 0.00 3.18
1921 5796 8.753133 TCATTCTTAAGCTTGAGTTAGATGAGA 58.247 33.333 16.97 4.19 0.00 3.27
1951 5826 5.585047 GCTGTACTAATTTTACTCCACTGGG 59.415 44.000 0.00 0.00 0.00 4.45
2162 6042 7.107639 TGAGTGATACTGGATTATCAACGAA 57.892 36.000 0.00 0.00 39.62 3.85
2281 6161 9.770097 CAAAGATAGCTTAACATCTTCCATAGA 57.230 33.333 9.38 0.00 39.91 1.98
2282 6162 8.997323 CCAAAGATAGCTTAACATCTTCCATAG 58.003 37.037 9.38 0.55 39.91 2.23
2283 6163 8.494433 ACCAAAGATAGCTTAACATCTTCCATA 58.506 33.333 9.38 0.00 39.91 2.74
2284 6164 7.349598 ACCAAAGATAGCTTAACATCTTCCAT 58.650 34.615 9.38 0.00 39.91 3.41
2285 6165 6.721318 ACCAAAGATAGCTTAACATCTTCCA 58.279 36.000 9.38 0.00 39.91 3.53
2286 6166 7.631717 AACCAAAGATAGCTTAACATCTTCC 57.368 36.000 9.38 0.00 39.91 3.46
2287 6167 9.346725 CAAAACCAAAGATAGCTTAACATCTTC 57.653 33.333 9.38 0.00 39.91 2.87
2288 6168 8.860088 ACAAAACCAAAGATAGCTTAACATCTT 58.140 29.630 3.99 3.99 42.03 2.40
2289 6169 8.409358 ACAAAACCAAAGATAGCTTAACATCT 57.591 30.769 0.00 0.00 32.98 2.90
2327 6207 8.536175 TGATTACCTCTACATAATGAACACACA 58.464 33.333 0.00 0.00 0.00 3.72
2427 6356 8.825745 GGAACATCAAAATAGAAGCAAAAACAA 58.174 29.630 0.00 0.00 0.00 2.83
2428 6357 7.984050 TGGAACATCAAAATAGAAGCAAAAACA 59.016 29.630 0.00 0.00 0.00 2.83
2429 6358 8.364129 TGGAACATCAAAATAGAAGCAAAAAC 57.636 30.769 0.00 0.00 0.00 2.43
2479 6408 4.565236 CGGACGGAGGGAGTATCTACTAAT 60.565 50.000 0.00 0.00 36.50 1.73
2488 6417 1.856629 ATTTTCGGACGGAGGGAGTA 58.143 50.000 0.00 0.00 0.00 2.59
2489 6418 1.479730 GTATTTTCGGACGGAGGGAGT 59.520 52.381 0.00 0.00 0.00 3.85
2490 6419 1.755380 AGTATTTTCGGACGGAGGGAG 59.245 52.381 0.00 0.00 0.00 4.30
2491 6420 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
2492 6421 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2493 6422 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2494 6423 3.581755 TGACAAGTATTTTCGGACGGAG 58.418 45.455 0.00 0.00 0.00 4.63
2495 6424 3.663995 TGACAAGTATTTTCGGACGGA 57.336 42.857 0.00 0.00 0.00 4.69
2496 6425 3.930229 TGATGACAAGTATTTTCGGACGG 59.070 43.478 0.00 0.00 0.00 4.79
2497 6426 5.524511 TTGATGACAAGTATTTTCGGACG 57.475 39.130 0.00 0.00 0.00 4.79
2498 6427 7.216317 CGATTTTGATGACAAGTATTTTCGGAC 59.784 37.037 0.00 0.00 37.32 4.79
2499 6428 7.118535 TCGATTTTGATGACAAGTATTTTCGGA 59.881 33.333 0.00 0.00 37.32 4.55
2500 6429 7.240674 TCGATTTTGATGACAAGTATTTTCGG 58.759 34.615 0.00 0.00 37.32 4.30
2501 6430 8.826546 ATCGATTTTGATGACAAGTATTTTCG 57.173 30.769 0.00 0.00 37.32 3.46
2507 6436 8.673711 CCCTTTTATCGATTTTGATGACAAGTA 58.326 33.333 1.71 0.00 37.32 2.24
2509 6438 7.698130 GTCCCTTTTATCGATTTTGATGACAAG 59.302 37.037 1.71 0.00 37.32 3.16
2510 6439 7.535139 GTCCCTTTTATCGATTTTGATGACAA 58.465 34.615 1.71 0.00 0.00 3.18
2511 6440 6.183360 CGTCCCTTTTATCGATTTTGATGACA 60.183 38.462 1.71 0.00 0.00 3.58
2512 6441 6.183360 ACGTCCCTTTTATCGATTTTGATGAC 60.183 38.462 1.71 4.14 0.00 3.06
2513 6442 5.878116 ACGTCCCTTTTATCGATTTTGATGA 59.122 36.000 1.71 0.00 0.00 2.92
2514 6443 6.119144 ACGTCCCTTTTATCGATTTTGATG 57.881 37.500 1.71 0.98 0.00 3.07
2515 6444 7.931948 AGATACGTCCCTTTTATCGATTTTGAT 59.068 33.333 1.71 0.00 0.00 2.57
2516 6445 7.270047 AGATACGTCCCTTTTATCGATTTTGA 58.730 34.615 1.71 0.00 0.00 2.69
2517 6446 7.478520 AGATACGTCCCTTTTATCGATTTTG 57.521 36.000 1.71 0.00 0.00 2.44
2518 6447 8.636213 TCTAGATACGTCCCTTTTATCGATTTT 58.364 33.333 1.71 0.00 0.00 1.82
2519 6448 8.174733 TCTAGATACGTCCCTTTTATCGATTT 57.825 34.615 1.71 0.00 0.00 2.17
2520 6449 7.756395 TCTAGATACGTCCCTTTTATCGATT 57.244 36.000 1.71 0.00 0.00 3.34
2521 6450 7.447853 AGTTCTAGATACGTCCCTTTTATCGAT 59.552 37.037 2.16 2.16 0.00 3.59
2522 6451 6.769822 AGTTCTAGATACGTCCCTTTTATCGA 59.230 38.462 0.00 0.00 0.00 3.59
2523 6452 6.968250 AGTTCTAGATACGTCCCTTTTATCG 58.032 40.000 0.00 0.00 0.00 2.92
2529 6458 8.348507 CGTATTTTAGTTCTAGATACGTCCCTT 58.651 37.037 18.48 0.00 40.12 3.95
2530 6459 7.869800 CGTATTTTAGTTCTAGATACGTCCCT 58.130 38.462 18.48 0.00 40.12 4.20
2576 6505 7.175816 TCCGGAAATACTTGTCATCAAAATGAA 59.824 33.333 0.00 0.00 43.42 2.57
2577 6506 6.657117 TCCGGAAATACTTGTCATCAAAATGA 59.343 34.615 0.00 0.00 39.63 2.57
2578 6507 6.747280 GTCCGGAAATACTTGTCATCAAAATG 59.253 38.462 5.23 0.00 32.87 2.32
2580 6509 5.106869 CGTCCGGAAATACTTGTCATCAAAA 60.107 40.000 5.23 0.00 32.87 2.44
2586 6515 1.894466 TCCGTCCGGAAATACTTGTCA 59.106 47.619 5.23 0.00 42.05 3.58
2589 6518 1.472728 CCCTCCGTCCGGAAATACTTG 60.473 57.143 5.23 0.00 44.66 3.16
2591 6520 0.032813 TCCCTCCGTCCGGAAATACT 60.033 55.000 5.23 0.00 44.66 2.12
2592 6521 0.388294 CTCCCTCCGTCCGGAAATAC 59.612 60.000 5.23 0.00 44.66 1.89
2593 6522 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2595 6524 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2596 6525 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
2597 6526 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
2598 6527 2.795231 TATATACTCCCTCCGTCCGG 57.205 55.000 0.00 0.00 0.00 5.14
2599 6528 4.267536 TCATTATATACTCCCTCCGTCCG 58.732 47.826 0.00 0.00 0.00 4.79
2600 6529 5.394333 GCTTCATTATATACTCCCTCCGTCC 60.394 48.000 0.00 0.00 0.00 4.79
2601 6530 5.185249 TGCTTCATTATATACTCCCTCCGTC 59.815 44.000 0.00 0.00 0.00 4.79
2602 6531 5.084519 TGCTTCATTATATACTCCCTCCGT 58.915 41.667 0.00 0.00 0.00 4.69
2603 6532 5.661056 TGCTTCATTATATACTCCCTCCG 57.339 43.478 0.00 0.00 0.00 4.63
2604 6533 7.093112 ACAGATGCTTCATTATATACTCCCTCC 60.093 40.741 2.07 0.00 0.00 4.30
2605 6534 7.763528 CACAGATGCTTCATTATATACTCCCTC 59.236 40.741 2.07 0.00 0.00 4.30
2607 6536 6.820656 CCACAGATGCTTCATTATATACTCCC 59.179 42.308 2.07 0.00 0.00 4.30
2611 6540 8.383318 ACAACCACAGATGCTTCATTATATAC 57.617 34.615 2.07 0.00 0.00 1.47
2617 6546 2.821969 GGACAACCACAGATGCTTCATT 59.178 45.455 2.07 0.00 35.97 2.57
2663 6592 5.014858 ACACTTAGATCCTACTTTCGGTGA 58.985 41.667 0.00 0.00 0.00 4.02
2666 6649 4.096081 ACGACACTTAGATCCTACTTTCGG 59.904 45.833 0.00 0.00 0.00 4.30
2668 6651 6.127952 ACAGACGACACTTAGATCCTACTTTC 60.128 42.308 0.00 0.00 0.00 2.62
2671 6654 4.846040 ACAGACGACACTTAGATCCTACT 58.154 43.478 0.00 0.00 0.00 2.57
2734 6756 2.358898 AGATGCCGCCAAACATAATCAC 59.641 45.455 0.00 0.00 0.00 3.06
2739 6761 2.700722 TGTAGATGCCGCCAAACATA 57.299 45.000 0.00 0.00 0.00 2.29
2748 6770 0.585357 GCTGCTTGATGTAGATGCCG 59.415 55.000 0.00 0.00 0.00 5.69
2749 6771 0.950116 GGCTGCTTGATGTAGATGCC 59.050 55.000 0.00 0.00 0.00 4.40
2750 6772 0.950116 GGGCTGCTTGATGTAGATGC 59.050 55.000 0.00 0.00 0.00 3.91
2751 6773 2.617308 CAAGGGCTGCTTGATGTAGATG 59.383 50.000 0.00 0.00 33.98 2.90
2752 6774 2.928334 CAAGGGCTGCTTGATGTAGAT 58.072 47.619 0.00 0.00 33.98 1.98
2753 6775 2.408271 CAAGGGCTGCTTGATGTAGA 57.592 50.000 0.00 0.00 33.98 2.59
2768 6790 2.988493 CGACATCCATTGTTTTGCAAGG 59.012 45.455 0.00 0.00 40.86 3.61
2769 6791 3.641648 ACGACATCCATTGTTTTGCAAG 58.358 40.909 0.00 0.00 40.86 4.01
2770 6792 3.724508 ACGACATCCATTGTTTTGCAA 57.275 38.095 0.00 0.00 39.18 4.08
2771 6793 6.691754 ATATACGACATCCATTGTTTTGCA 57.308 33.333 0.00 0.00 39.18 4.08
2772 6794 6.972328 ACAATATACGACATCCATTGTTTTGC 59.028 34.615 0.00 0.00 39.18 3.68
2773 6795 9.433317 GTACAATATACGACATCCATTGTTTTG 57.567 33.333 3.84 0.00 39.72 2.44
2774 6796 9.391006 AGTACAATATACGACATCCATTGTTTT 57.609 29.630 3.84 0.00 39.72 2.43
2775 6797 8.958119 AGTACAATATACGACATCCATTGTTT 57.042 30.769 3.84 0.00 39.72 2.83
2776 6798 8.958119 AAGTACAATATACGACATCCATTGTT 57.042 30.769 3.84 0.00 39.72 2.83
2877 6906 5.756195 TTCATAATGCAGCCAATACTGAC 57.244 39.130 0.00 0.00 40.25 3.51
2897 6927 3.609103 AACTGCAACGACTGATGTTTC 57.391 42.857 0.00 0.00 0.00 2.78
2916 6946 9.646427 AAGCAAACTTACACAACAATCTAAAAA 57.354 25.926 0.00 0.00 33.13 1.94
2917 6947 9.081997 CAAGCAAACTTACACAACAATCTAAAA 57.918 29.630 0.00 0.00 33.74 1.52
2938 7088 5.362143 AGAGAGAGTATCACATAAGCAAGCA 59.638 40.000 0.00 0.00 37.82 3.91
2992 7146 3.071874 TGGAGAAAATGGCAACTCGAT 57.928 42.857 0.00 0.00 37.61 3.59
3388 7542 1.342874 CCACCCTTCCCAATAATGGCA 60.343 52.381 0.00 0.00 46.09 4.92
3499 7653 0.613260 CCTGATCAAACGACCCCTCA 59.387 55.000 0.00 0.00 0.00 3.86
3529 7683 2.295349 CAGCTCTTTCACCATTGCACTT 59.705 45.455 0.00 0.00 0.00 3.16
3568 7728 1.485294 TTGCTTGAGGAGGGGCGTTA 61.485 55.000 0.00 0.00 0.00 3.18
3756 7916 7.864686 TCACTATTAATCATGAAAAGCGATGG 58.135 34.615 0.00 0.00 0.00 3.51
3827 7988 2.554032 ACAGGCTTATGCAACTCAACAC 59.446 45.455 2.72 0.00 41.91 3.32
3872 8033 0.392863 TGATCACACCGAAGCCATGG 60.393 55.000 7.63 7.63 0.00 3.66
3949 8110 7.284489 AGACAAAAAGACAGGCAATACACTAAA 59.716 33.333 0.00 0.00 0.00 1.85
3963 8124 3.733337 GGAGCAGAGAGACAAAAAGACA 58.267 45.455 0.00 0.00 0.00 3.41
3964 8125 2.734079 CGGAGCAGAGAGACAAAAAGAC 59.266 50.000 0.00 0.00 0.00 3.01
3965 8126 3.032017 CGGAGCAGAGAGACAAAAAGA 57.968 47.619 0.00 0.00 0.00 2.52
4035 8196 8.178313 TCTATAACTCGCTGGAAATAGAATCA 57.822 34.615 0.00 0.00 0.00 2.57
4047 8208 6.313905 AGTTTGGTTGATTCTATAACTCGCTG 59.686 38.462 0.00 0.00 0.00 5.18
4048 8209 6.407202 AGTTTGGTTGATTCTATAACTCGCT 58.593 36.000 0.00 0.00 0.00 4.93
4050 8211 8.251750 TCAAGTTTGGTTGATTCTATAACTCG 57.748 34.615 0.00 0.00 31.31 4.18
4068 8230 6.372659 ACATCGCATGAAAGATACTCAAGTTT 59.627 34.615 0.00 0.00 0.00 2.66
4085 8247 2.027745 AGACTGACCAAGAACATCGCAT 60.028 45.455 0.00 0.00 0.00 4.73
4088 8250 2.341257 CCAGACTGACCAAGAACATCG 58.659 52.381 3.32 0.00 0.00 3.84
4160 8360 3.767673 TCCAAACCGAATGTACTAGCTCT 59.232 43.478 0.00 0.00 0.00 4.09
4161 8361 4.119442 TCCAAACCGAATGTACTAGCTC 57.881 45.455 0.00 0.00 0.00 4.09
4162 8362 4.755266 ATCCAAACCGAATGTACTAGCT 57.245 40.909 0.00 0.00 0.00 3.32
4163 8363 5.353938 TGTATCCAAACCGAATGTACTAGC 58.646 41.667 0.00 0.00 0.00 3.42
4167 8369 8.428186 TCTTATTGTATCCAAACCGAATGTAC 57.572 34.615 0.00 0.00 33.44 2.90
4250 8453 7.445707 GGTTATCCACTCTTTTGAAAGTCTTCT 59.554 37.037 3.63 0.00 37.31 2.85
4251 8454 7.308649 GGGTTATCCACTCTTTTGAAAGTCTTC 60.309 40.741 3.63 0.00 35.02 2.87
4253 8456 6.004574 GGGTTATCCACTCTTTTGAAAGTCT 58.995 40.000 3.63 0.00 35.02 3.24
4254 8457 6.004574 AGGGTTATCCACTCTTTTGAAAGTC 58.995 40.000 3.63 0.00 27.89 3.01
4255 8458 5.953571 AGGGTTATCCACTCTTTTGAAAGT 58.046 37.500 3.63 0.00 27.89 2.66
4256 8459 7.447238 TGTTAGGGTTATCCACTCTTTTGAAAG 59.553 37.037 0.00 0.00 37.43 2.62
4258 8461 6.843752 TGTTAGGGTTATCCACTCTTTTGAA 58.156 36.000 0.00 0.00 37.43 2.69
4267 8479 3.014623 GGCAACTGTTAGGGTTATCCAC 58.985 50.000 0.00 0.00 38.24 4.02
4269 8481 3.279434 CTGGCAACTGTTAGGGTTATCC 58.721 50.000 0.00 0.00 37.61 2.59
4313 8525 2.342648 GTTCGGGTGAGGCGAACT 59.657 61.111 1.57 0.00 38.93 3.01
4338 8553 3.207265 TCAGCAACTTACTTTCTGGCA 57.793 42.857 0.00 0.00 0.00 4.92
4345 8560 4.039124 CCAATTGGGTTCAGCAACTTACTT 59.961 41.667 17.36 0.00 32.50 2.24
4405 8620 2.863740 CAAGCGGCAATTATCACTCGTA 59.136 45.455 1.45 0.00 0.00 3.43
4487 8703 3.415212 TGCTTTCAGCTGCTTGATTACT 58.585 40.909 9.47 0.00 42.97 2.24
4512 8743 1.409427 ACCTGGCTCGTTATACAGCTC 59.591 52.381 0.00 0.00 35.82 4.09
4552 8786 3.490526 GTGTTGGTTTACTGCTGCATTTG 59.509 43.478 1.31 0.00 0.00 2.32
4610 8846 4.184629 GGATGCTGTGTAAAGTAGTCTGG 58.815 47.826 0.00 0.00 0.00 3.86
4642 8884 2.352805 GGGTGGGCAAGTCCAGAG 59.647 66.667 0.00 0.00 37.50 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.