Multiple sequence alignment - TraesCS7B01G302000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G302000 chr7B 100.000 2624 0 0 1 2624 538863067 538865690 0.000000e+00 4846.0
1 TraesCS7B01G302000 chr7D 91.190 2202 101 38 460 2624 510449522 510451667 0.000000e+00 2905.0
2 TraesCS7B01G302000 chr7A 90.819 2211 132 36 433 2624 581344166 581346324 0.000000e+00 2892.0
3 TraesCS7B01G302000 chr3D 85.484 1240 105 31 1397 2610 156246450 156247640 0.000000e+00 1223.0
4 TraesCS7B01G302000 chr3B 83.223 1061 95 37 762 1788 225258378 225257367 0.000000e+00 896.0
5 TraesCS7B01G302000 chr3B 83.607 427 29 14 1977 2397 225255260 225254869 1.920000e-96 363.0
6 TraesCS7B01G302000 chr3B 89.216 204 20 1 1785 1988 225257207 225257006 1.210000e-63 254.0
7 TraesCS7B01G302000 chr3B 81.098 164 23 7 2394 2550 225254711 225254549 9.860000e-25 124.0
8 TraesCS7B01G302000 chr3B 88.889 54 4 1 2557 2610 225253617 225253566 6.060000e-07 65.8
9 TraesCS7B01G302000 chr4D 76.718 262 43 13 3 260 101445272 101445025 2.120000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G302000 chr7B 538863067 538865690 2623 False 4846.00 4846 100.0000 1 2624 1 chr7B.!!$F1 2623
1 TraesCS7B01G302000 chr7D 510449522 510451667 2145 False 2905.00 2905 91.1900 460 2624 1 chr7D.!!$F1 2164
2 TraesCS7B01G302000 chr7A 581344166 581346324 2158 False 2892.00 2892 90.8190 433 2624 1 chr7A.!!$F1 2191
3 TraesCS7B01G302000 chr3D 156246450 156247640 1190 False 1223.00 1223 85.4840 1397 2610 1 chr3D.!!$F1 1213
4 TraesCS7B01G302000 chr3B 225253566 225258378 4812 True 340.56 896 85.2066 762 2610 5 chr3B.!!$R1 1848

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
775 789 0.104144 TTTCCCCTTCCTCCTCACCA 60.104 55.0 0.0 0.0 0.0 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 2068 0.402504 TGTAGGCACCCAAACCGATT 59.597 50.0 0.0 0.0 0.0 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 3.956744 AGCTCCTTTGTGGTTTCCTATC 58.043 45.455 0.00 0.00 37.07 2.08
23 24 3.589288 AGCTCCTTTGTGGTTTCCTATCT 59.411 43.478 0.00 0.00 37.07 1.98
24 25 4.043435 AGCTCCTTTGTGGTTTCCTATCTT 59.957 41.667 0.00 0.00 37.07 2.40
25 26 4.156739 GCTCCTTTGTGGTTTCCTATCTTG 59.843 45.833 0.00 0.00 37.07 3.02
26 27 4.079253 TCCTTTGTGGTTTCCTATCTTGC 58.921 43.478 0.00 0.00 37.07 4.01
27 28 3.826157 CCTTTGTGGTTTCCTATCTTGCA 59.174 43.478 0.00 0.00 0.00 4.08
28 29 4.280677 CCTTTGTGGTTTCCTATCTTGCAA 59.719 41.667 0.00 0.00 0.00 4.08
29 30 5.221422 CCTTTGTGGTTTCCTATCTTGCAAA 60.221 40.000 0.00 0.00 0.00 3.68
30 31 6.418057 TTTGTGGTTTCCTATCTTGCAAAT 57.582 33.333 0.00 0.00 0.00 2.32
31 32 7.309744 CCTTTGTGGTTTCCTATCTTGCAAATA 60.310 37.037 0.00 1.23 0.00 1.40
32 33 7.531857 TTGTGGTTTCCTATCTTGCAAATAA 57.468 32.000 0.00 0.00 0.00 1.40
33 34 7.531857 TGTGGTTTCCTATCTTGCAAATAAA 57.468 32.000 0.00 0.00 0.00 1.40
34 35 8.133024 TGTGGTTTCCTATCTTGCAAATAAAT 57.867 30.769 0.00 0.00 0.00 1.40
35 36 8.592809 TGTGGTTTCCTATCTTGCAAATAAATT 58.407 29.630 0.00 0.00 0.00 1.82
36 37 8.872845 GTGGTTTCCTATCTTGCAAATAAATTG 58.127 33.333 0.00 0.00 42.21 2.32
37 38 8.592809 TGGTTTCCTATCTTGCAAATAAATTGT 58.407 29.630 0.00 0.00 41.32 2.71
42 43 9.679661 TCCTATCTTGCAAATAAATTGTAGACA 57.320 29.630 0.00 0.00 41.32 3.41
45 46 8.638685 ATCTTGCAAATAAATTGTAGACATGC 57.361 30.769 0.00 0.00 41.32 4.06
46 47 7.035004 TCTTGCAAATAAATTGTAGACATGCC 58.965 34.615 0.00 0.00 41.32 4.40
47 48 5.659463 TGCAAATAAATTGTAGACATGCCC 58.341 37.500 0.00 0.00 41.32 5.36
48 49 5.049828 GCAAATAAATTGTAGACATGCCCC 58.950 41.667 0.00 0.00 41.32 5.80
49 50 5.600696 CAAATAAATTGTAGACATGCCCCC 58.399 41.667 0.00 0.00 34.16 5.40
50 51 2.917713 AAATTGTAGACATGCCCCCA 57.082 45.000 0.00 0.00 0.00 4.96
51 52 3.403228 AAATTGTAGACATGCCCCCAT 57.597 42.857 0.00 0.00 0.00 4.00
52 53 3.403228 AATTGTAGACATGCCCCCATT 57.597 42.857 0.00 0.00 0.00 3.16
53 54 2.917713 TTGTAGACATGCCCCCATTT 57.082 45.000 0.00 0.00 0.00 2.32
54 55 4.534647 ATTGTAGACATGCCCCCATTTA 57.465 40.909 0.00 0.00 0.00 1.40
55 56 4.534647 TTGTAGACATGCCCCCATTTAT 57.465 40.909 0.00 0.00 0.00 1.40
56 57 4.534647 TGTAGACATGCCCCCATTTATT 57.465 40.909 0.00 0.00 0.00 1.40
57 58 4.214310 TGTAGACATGCCCCCATTTATTG 58.786 43.478 0.00 0.00 0.00 1.90
58 59 3.686227 AGACATGCCCCCATTTATTGA 57.314 42.857 0.00 0.00 0.00 2.57
59 60 3.299503 AGACATGCCCCCATTTATTGAC 58.700 45.455 0.00 0.00 0.00 3.18
60 61 2.365293 GACATGCCCCCATTTATTGACC 59.635 50.000 0.00 0.00 0.00 4.02
61 62 2.023113 ACATGCCCCCATTTATTGACCT 60.023 45.455 0.00 0.00 0.00 3.85
62 63 2.157640 TGCCCCCATTTATTGACCTG 57.842 50.000 0.00 0.00 0.00 4.00
63 64 1.643286 TGCCCCCATTTATTGACCTGA 59.357 47.619 0.00 0.00 0.00 3.86
64 65 2.043664 TGCCCCCATTTATTGACCTGAA 59.956 45.455 0.00 0.00 0.00 3.02
65 66 2.695147 GCCCCCATTTATTGACCTGAAG 59.305 50.000 0.00 0.00 0.00 3.02
66 67 3.627237 GCCCCCATTTATTGACCTGAAGA 60.627 47.826 0.00 0.00 0.00 2.87
67 68 4.210331 CCCCCATTTATTGACCTGAAGAG 58.790 47.826 0.00 0.00 0.00 2.85
68 69 4.079787 CCCCCATTTATTGACCTGAAGAGA 60.080 45.833 0.00 0.00 0.00 3.10
69 70 5.128919 CCCCATTTATTGACCTGAAGAGAG 58.871 45.833 0.00 0.00 0.00 3.20
70 71 5.104360 CCCCATTTATTGACCTGAAGAGAGA 60.104 44.000 0.00 0.00 0.00 3.10
71 72 6.418101 CCCATTTATTGACCTGAAGAGAGAA 58.582 40.000 0.00 0.00 0.00 2.87
72 73 6.541641 CCCATTTATTGACCTGAAGAGAGAAG 59.458 42.308 0.00 0.00 0.00 2.85
73 74 6.038050 CCATTTATTGACCTGAAGAGAGAAGC 59.962 42.308 0.00 0.00 0.00 3.86
74 75 2.732412 TTGACCTGAAGAGAGAAGCG 57.268 50.000 0.00 0.00 0.00 4.68
75 76 0.244994 TGACCTGAAGAGAGAAGCGC 59.755 55.000 0.00 0.00 0.00 5.92
76 77 0.530288 GACCTGAAGAGAGAAGCGCT 59.470 55.000 2.64 2.64 0.00 5.92
77 78 0.972883 ACCTGAAGAGAGAAGCGCTT 59.027 50.000 25.35 25.35 39.47 4.68
78 79 1.337635 ACCTGAAGAGAGAAGCGCTTG 60.338 52.381 30.47 11.40 36.73 4.01
79 80 1.357907 CTGAAGAGAGAAGCGCTTGG 58.642 55.000 30.47 2.15 36.73 3.61
80 81 0.671781 TGAAGAGAGAAGCGCTTGGC 60.672 55.000 30.47 18.69 36.73 4.52
90 91 2.877396 GCGCTTGGCATTATGAAGC 58.123 52.632 0.00 8.13 42.87 3.86
91 92 0.383231 GCGCTTGGCATTATGAAGCT 59.617 50.000 14.01 0.00 40.00 3.74
92 93 1.598924 GCGCTTGGCATTATGAAGCTC 60.599 52.381 14.01 5.35 40.00 4.09
93 94 1.672363 CGCTTGGCATTATGAAGCTCA 59.328 47.619 14.01 0.00 40.00 4.26
94 95 2.292569 CGCTTGGCATTATGAAGCTCAT 59.707 45.455 14.01 0.00 40.00 2.90
95 96 3.499537 CGCTTGGCATTATGAAGCTCATA 59.500 43.478 14.01 0.00 40.00 2.15
110 111 8.659925 TGAAGCTCATAAGAAATCTCAAGATC 57.340 34.615 0.00 0.00 32.75 2.75
111 112 8.484575 TGAAGCTCATAAGAAATCTCAAGATCT 58.515 33.333 0.00 0.00 32.75 2.75
112 113 9.328845 GAAGCTCATAAGAAATCTCAAGATCTT 57.671 33.333 0.88 0.88 32.75 2.40
113 114 8.665643 AGCTCATAAGAAATCTCAAGATCTTG 57.334 34.615 26.56 26.56 41.71 3.02
114 115 8.484575 AGCTCATAAGAAATCTCAAGATCTTGA 58.515 33.333 31.10 31.10 46.27 3.02
125 126 4.065088 TCAAGATCTTGAAGACCAAACGG 58.935 43.478 31.25 5.10 45.56 4.44
126 127 2.427506 AGATCTTGAAGACCAAACGGC 58.572 47.619 0.00 0.00 33.76 5.68
127 128 1.128692 GATCTTGAAGACCAAACGGCG 59.871 52.381 4.80 4.80 33.76 6.46
128 129 0.882927 TCTTGAAGACCAAACGGCGG 60.883 55.000 13.24 0.00 33.76 6.13
129 130 1.852067 CTTGAAGACCAAACGGCGGG 61.852 60.000 13.24 5.33 33.76 6.13
130 131 3.733960 GAAGACCAAACGGCGGGC 61.734 66.667 13.24 0.00 0.00 6.13
131 132 4.572571 AAGACCAAACGGCGGGCA 62.573 61.111 13.24 0.00 31.91 5.36
132 133 4.572571 AGACCAAACGGCGGGCAA 62.573 61.111 13.24 0.00 31.91 4.52
133 134 3.597728 GACCAAACGGCGGGCAAA 61.598 61.111 13.24 0.00 0.00 3.68
134 135 2.915137 ACCAAACGGCGGGCAAAT 60.915 55.556 13.24 0.00 0.00 2.32
135 136 1.587933 GACCAAACGGCGGGCAAATA 61.588 55.000 13.24 0.00 0.00 1.40
136 137 1.153920 CCAAACGGCGGGCAAATAC 60.154 57.895 13.24 0.00 0.00 1.89
137 138 1.513160 CAAACGGCGGGCAAATACG 60.513 57.895 13.24 0.00 0.00 3.06
138 139 2.692766 AAACGGCGGGCAAATACGG 61.693 57.895 13.24 0.00 0.00 4.02
142 143 4.552745 GCGGGCAAATACGGCAGC 62.553 66.667 0.00 0.00 44.46 5.25
143 144 2.824041 CGGGCAAATACGGCAGCT 60.824 61.111 0.00 0.00 0.00 4.24
144 145 2.823829 CGGGCAAATACGGCAGCTC 61.824 63.158 0.00 0.00 0.00 4.09
145 146 2.481471 GGGCAAATACGGCAGCTCC 61.481 63.158 0.00 0.00 0.00 4.70
146 147 1.452108 GGCAAATACGGCAGCTCCT 60.452 57.895 0.00 0.00 0.00 3.69
147 148 1.718757 GGCAAATACGGCAGCTCCTG 61.719 60.000 0.00 0.00 34.12 3.86
148 149 0.744414 GCAAATACGGCAGCTCCTGA 60.744 55.000 0.00 0.00 32.44 3.86
149 150 1.293924 CAAATACGGCAGCTCCTGAG 58.706 55.000 0.00 0.00 32.44 3.35
150 151 1.134699 CAAATACGGCAGCTCCTGAGA 60.135 52.381 0.00 0.00 32.44 3.27
151 152 1.418334 AATACGGCAGCTCCTGAGAT 58.582 50.000 0.00 0.00 32.44 2.75
152 153 1.418334 ATACGGCAGCTCCTGAGATT 58.582 50.000 0.00 0.00 32.44 2.40
153 154 0.461548 TACGGCAGCTCCTGAGATTG 59.538 55.000 0.00 0.00 32.44 2.67
154 155 2.178890 CGGCAGCTCCTGAGATTGC 61.179 63.158 12.78 12.78 38.78 3.56
155 156 1.224039 GGCAGCTCCTGAGATTGCT 59.776 57.895 17.69 0.00 39.18 3.91
156 157 0.467384 GGCAGCTCCTGAGATTGCTA 59.533 55.000 17.69 0.00 39.18 3.49
157 158 1.134280 GGCAGCTCCTGAGATTGCTAA 60.134 52.381 17.69 0.00 39.18 3.09
158 159 2.211806 GCAGCTCCTGAGATTGCTAAG 58.788 52.381 13.51 0.00 37.49 2.18
159 160 2.419851 GCAGCTCCTGAGATTGCTAAGT 60.420 50.000 13.51 0.00 37.49 2.24
160 161 3.871485 CAGCTCCTGAGATTGCTAAGTT 58.129 45.455 0.00 0.00 34.10 2.66
161 162 4.260170 CAGCTCCTGAGATTGCTAAGTTT 58.740 43.478 0.00 0.00 34.10 2.66
162 163 5.423015 CAGCTCCTGAGATTGCTAAGTTTA 58.577 41.667 0.00 0.00 34.10 2.01
163 164 6.054295 CAGCTCCTGAGATTGCTAAGTTTAT 58.946 40.000 0.00 0.00 34.10 1.40
164 165 6.541641 CAGCTCCTGAGATTGCTAAGTTTATT 59.458 38.462 0.00 0.00 34.10 1.40
165 166 7.066766 CAGCTCCTGAGATTGCTAAGTTTATTT 59.933 37.037 0.00 0.00 34.10 1.40
166 167 7.613411 AGCTCCTGAGATTGCTAAGTTTATTTT 59.387 33.333 0.00 0.00 33.64 1.82
167 168 8.893727 GCTCCTGAGATTGCTAAGTTTATTTTA 58.106 33.333 0.00 0.00 0.00 1.52
187 188 7.627585 TTTTATTTCGATAATAGGTCGGACG 57.372 36.000 1.43 0.00 39.45 4.79
188 189 3.631145 TTTCGATAATAGGTCGGACGG 57.369 47.619 1.43 0.00 39.45 4.79
189 190 2.260844 TCGATAATAGGTCGGACGGT 57.739 50.000 1.43 0.00 39.45 4.83
190 191 2.575532 TCGATAATAGGTCGGACGGTT 58.424 47.619 1.43 0.00 39.45 4.44
191 192 2.951642 TCGATAATAGGTCGGACGGTTT 59.048 45.455 1.43 0.00 39.45 3.27
192 193 3.381272 TCGATAATAGGTCGGACGGTTTT 59.619 43.478 1.43 0.00 39.45 2.43
193 194 3.732721 CGATAATAGGTCGGACGGTTTTC 59.267 47.826 1.43 1.73 35.55 2.29
194 195 4.498682 CGATAATAGGTCGGACGGTTTTCT 60.499 45.833 1.43 0.00 35.55 2.52
195 196 3.690475 AATAGGTCGGACGGTTTTCTT 57.310 42.857 1.43 0.00 0.00 2.52
196 197 3.690475 ATAGGTCGGACGGTTTTCTTT 57.310 42.857 1.43 0.00 0.00 2.52
197 198 2.336945 AGGTCGGACGGTTTTCTTTT 57.663 45.000 1.43 0.00 0.00 2.27
198 199 2.646930 AGGTCGGACGGTTTTCTTTTT 58.353 42.857 1.43 0.00 0.00 1.94
215 216 3.651803 TTTTTACAATGTTCCGCCCTG 57.348 42.857 0.00 0.00 0.00 4.45
216 217 0.885196 TTTACAATGTTCCGCCCTGC 59.115 50.000 0.00 0.00 0.00 4.85
228 229 2.203252 CCCTGCGTGGCATATGCT 60.203 61.111 26.12 0.00 41.99 3.79
229 230 1.071299 CCCTGCGTGGCATATGCTA 59.929 57.895 26.12 18.86 41.99 3.49
230 231 0.321919 CCCTGCGTGGCATATGCTAT 60.322 55.000 26.12 0.00 41.99 2.97
231 232 1.066215 CCCTGCGTGGCATATGCTATA 60.066 52.381 26.12 11.14 41.99 1.31
232 233 2.615240 CCCTGCGTGGCATATGCTATAA 60.615 50.000 26.12 9.85 41.99 0.98
233 234 3.273434 CCTGCGTGGCATATGCTATAAT 58.727 45.455 26.12 0.00 41.99 1.28
234 235 3.064408 CCTGCGTGGCATATGCTATAATG 59.936 47.826 26.12 15.34 41.99 1.90
235 236 3.934579 CTGCGTGGCATATGCTATAATGA 59.065 43.478 26.12 4.67 41.99 2.57
236 237 3.934579 TGCGTGGCATATGCTATAATGAG 59.065 43.478 26.12 10.44 41.99 2.90
237 238 3.935203 GCGTGGCATATGCTATAATGAGT 59.065 43.478 26.12 0.00 41.70 3.41
238 239 4.201753 GCGTGGCATATGCTATAATGAGTG 60.202 45.833 26.12 6.44 41.70 3.51
239 240 5.170748 CGTGGCATATGCTATAATGAGTGA 58.829 41.667 26.12 0.00 41.70 3.41
240 241 5.814188 CGTGGCATATGCTATAATGAGTGAT 59.186 40.000 26.12 0.00 41.70 3.06
241 242 6.019237 CGTGGCATATGCTATAATGAGTGATC 60.019 42.308 26.12 5.84 41.70 2.92
242 243 6.019237 GTGGCATATGCTATAATGAGTGATCG 60.019 42.308 26.12 0.00 41.70 3.69
243 244 6.045318 GGCATATGCTATAATGAGTGATCGT 58.955 40.000 26.12 0.00 41.70 3.73
244 245 7.147915 TGGCATATGCTATAATGAGTGATCGTA 60.148 37.037 26.12 0.00 41.70 3.43
245 246 7.168302 GGCATATGCTATAATGAGTGATCGTAC 59.832 40.741 26.12 0.00 41.70 3.67
246 247 7.702348 GCATATGCTATAATGAGTGATCGTACA 59.298 37.037 20.64 0.00 38.21 2.90
247 248 9.573133 CATATGCTATAATGAGTGATCGTACAA 57.427 33.333 0.00 0.00 0.00 2.41
249 250 7.694388 TGCTATAATGAGTGATCGTACAAAC 57.306 36.000 0.00 0.00 0.00 2.93
250 251 7.262048 TGCTATAATGAGTGATCGTACAAACA 58.738 34.615 0.00 0.00 0.00 2.83
251 252 7.926018 TGCTATAATGAGTGATCGTACAAACAT 59.074 33.333 0.00 0.00 0.00 2.71
252 253 8.765219 GCTATAATGAGTGATCGTACAAACATT 58.235 33.333 0.00 0.00 34.75 2.71
257 258 9.825972 AATGAGTGATCGTACAAACATTTTAAG 57.174 29.630 0.00 0.00 30.40 1.85
258 259 8.373048 TGAGTGATCGTACAAACATTTTAAGT 57.627 30.769 0.00 0.00 0.00 2.24
259 260 8.832521 TGAGTGATCGTACAAACATTTTAAGTT 58.167 29.630 0.00 0.00 0.00 2.66
260 261 9.103048 GAGTGATCGTACAAACATTTTAAGTTG 57.897 33.333 0.00 0.00 0.00 3.16
261 262 8.832521 AGTGATCGTACAAACATTTTAAGTTGA 58.167 29.630 0.00 0.00 0.00 3.18
262 263 9.607285 GTGATCGTACAAACATTTTAAGTTGAT 57.393 29.630 0.00 0.00 0.00 2.57
277 278 9.802039 TTTTAAGTTGATTAATATATCGGGCCT 57.198 29.630 0.84 0.00 33.40 5.19
278 279 9.802039 TTTAAGTTGATTAATATATCGGGCCTT 57.198 29.630 0.84 0.00 33.40 4.35
279 280 9.802039 TTAAGTTGATTAATATATCGGGCCTTT 57.198 29.630 0.84 0.00 0.00 3.11
281 282 9.802039 AAGTTGATTAATATATCGGGCCTTTAA 57.198 29.630 0.84 0.00 0.00 1.52
282 283 9.802039 AGTTGATTAATATATCGGGCCTTTAAA 57.198 29.630 0.84 0.00 0.00 1.52
302 303 0.598065 AAAAAGCACTGTCATCCGCC 59.402 50.000 0.00 0.00 0.00 6.13
303 304 1.244019 AAAAGCACTGTCATCCGCCC 61.244 55.000 0.00 0.00 0.00 6.13
304 305 2.410322 AAAGCACTGTCATCCGCCCA 62.410 55.000 0.00 0.00 0.00 5.36
305 306 2.359850 GCACTGTCATCCGCCCAA 60.360 61.111 0.00 0.00 0.00 4.12
306 307 2.401766 GCACTGTCATCCGCCCAAG 61.402 63.158 0.00 0.00 0.00 3.61
307 308 2.045926 ACTGTCATCCGCCCAAGC 60.046 61.111 0.00 0.00 0.00 4.01
320 321 4.641645 CAAGCGCCACACCTGGGA 62.642 66.667 2.29 0.00 38.13 4.37
321 322 4.335647 AAGCGCCACACCTGGGAG 62.336 66.667 2.29 0.00 38.13 4.30
324 325 4.394712 CGCCACACCTGGGAGGAC 62.395 72.222 0.00 0.00 37.67 3.85
325 326 4.035102 GCCACACCTGGGAGGACC 62.035 72.222 0.00 0.00 37.67 4.46
326 327 2.203998 CCACACCTGGGAGGACCT 60.204 66.667 0.00 0.00 37.67 3.85
327 328 1.080354 CCACACCTGGGAGGACCTA 59.920 63.158 0.00 0.00 37.67 3.08
328 329 0.546747 CCACACCTGGGAGGACCTAA 60.547 60.000 0.00 0.00 37.67 2.69
329 330 1.358152 CACACCTGGGAGGACCTAAA 58.642 55.000 0.00 0.00 37.67 1.85
330 331 1.702957 CACACCTGGGAGGACCTAAAA 59.297 52.381 0.00 0.00 37.67 1.52
331 332 2.107552 CACACCTGGGAGGACCTAAAAA 59.892 50.000 0.00 0.00 37.67 1.94
332 333 2.107726 ACACCTGGGAGGACCTAAAAAC 59.892 50.000 0.00 0.00 37.67 2.43
333 334 1.709115 ACCTGGGAGGACCTAAAAACC 59.291 52.381 0.00 0.00 37.67 3.27
334 335 1.005569 CCTGGGAGGACCTAAAAACCC 59.994 57.143 8.08 8.08 37.67 4.11
335 336 1.993301 CTGGGAGGACCTAAAAACCCT 59.007 52.381 14.73 0.00 41.11 4.34
336 337 3.187112 CTGGGAGGACCTAAAAACCCTA 58.813 50.000 14.73 0.00 41.11 3.53
337 338 3.187112 TGGGAGGACCTAAAAACCCTAG 58.813 50.000 14.73 0.00 41.11 3.02
338 339 3.187942 GGGAGGACCTAAAAACCCTAGT 58.812 50.000 7.80 0.00 35.85 2.57
339 340 3.199508 GGGAGGACCTAAAAACCCTAGTC 59.800 52.174 7.80 0.00 35.85 2.59
340 341 4.102598 GGAGGACCTAAAAACCCTAGTCT 58.897 47.826 0.00 0.00 0.00 3.24
341 342 4.081031 GGAGGACCTAAAAACCCTAGTCTG 60.081 50.000 0.00 0.00 0.00 3.51
342 343 4.759953 AGGACCTAAAAACCCTAGTCTGA 58.240 43.478 0.00 0.00 0.00 3.27
343 344 5.160386 AGGACCTAAAAACCCTAGTCTGAA 58.840 41.667 0.00 0.00 0.00 3.02
344 345 5.012871 AGGACCTAAAAACCCTAGTCTGAAC 59.987 44.000 0.00 0.00 0.00 3.18
345 346 5.012871 GGACCTAAAAACCCTAGTCTGAACT 59.987 44.000 0.00 0.00 39.66 3.01
346 347 6.212187 GGACCTAAAAACCCTAGTCTGAACTA 59.788 42.308 0.00 0.00 36.92 2.24
347 348 7.002250 ACCTAAAAACCCTAGTCTGAACTAC 57.998 40.000 0.00 0.00 36.92 2.73
348 349 6.556116 ACCTAAAAACCCTAGTCTGAACTACA 59.444 38.462 0.00 0.00 36.92 2.74
349 350 7.071572 ACCTAAAAACCCTAGTCTGAACTACAA 59.928 37.037 0.00 0.00 36.92 2.41
350 351 7.935210 CCTAAAAACCCTAGTCTGAACTACAAA 59.065 37.037 0.00 0.00 36.92 2.83
351 352 7.563888 AAAAACCCTAGTCTGAACTACAAAC 57.436 36.000 0.00 0.00 36.92 2.93
352 353 4.886496 ACCCTAGTCTGAACTACAAACC 57.114 45.455 0.00 0.00 36.92 3.27
353 354 4.228824 ACCCTAGTCTGAACTACAAACCA 58.771 43.478 0.00 0.00 36.92 3.67
354 355 4.283722 ACCCTAGTCTGAACTACAAACCAG 59.716 45.833 0.00 0.00 36.92 4.00
355 356 4.527038 CCCTAGTCTGAACTACAAACCAGA 59.473 45.833 0.00 0.00 36.92 3.86
356 357 5.336849 CCCTAGTCTGAACTACAAACCAGAG 60.337 48.000 0.00 0.00 36.46 3.35
357 358 5.477291 CCTAGTCTGAACTACAAACCAGAGA 59.523 44.000 0.00 0.00 36.46 3.10
358 359 5.461032 AGTCTGAACTACAAACCAGAGAG 57.539 43.478 0.00 0.00 36.46 3.20
359 360 5.141182 AGTCTGAACTACAAACCAGAGAGA 58.859 41.667 0.00 0.00 36.46 3.10
360 361 5.598830 AGTCTGAACTACAAACCAGAGAGAA 59.401 40.000 0.00 0.00 36.46 2.87
361 362 5.923684 GTCTGAACTACAAACCAGAGAGAAG 59.076 44.000 0.00 0.00 36.46 2.85
362 363 5.011125 TCTGAACTACAAACCAGAGAGAAGG 59.989 44.000 0.00 0.00 32.51 3.46
363 364 4.899457 TGAACTACAAACCAGAGAGAAGGA 59.101 41.667 0.00 0.00 0.00 3.36
364 365 5.365605 TGAACTACAAACCAGAGAGAAGGAA 59.634 40.000 0.00 0.00 0.00 3.36
365 366 5.216614 ACTACAAACCAGAGAGAAGGAAC 57.783 43.478 0.00 0.00 0.00 3.62
366 367 4.654262 ACTACAAACCAGAGAGAAGGAACA 59.346 41.667 0.00 0.00 0.00 3.18
367 368 4.713792 ACAAACCAGAGAGAAGGAACAT 57.286 40.909 0.00 0.00 0.00 2.71
368 369 4.392940 ACAAACCAGAGAGAAGGAACATG 58.607 43.478 0.00 0.00 0.00 3.21
369 370 3.710209 AACCAGAGAGAAGGAACATGG 57.290 47.619 0.00 0.00 0.00 3.66
370 371 2.907892 ACCAGAGAGAAGGAACATGGA 58.092 47.619 0.00 0.00 0.00 3.41
371 372 3.458831 ACCAGAGAGAAGGAACATGGAT 58.541 45.455 0.00 0.00 0.00 3.41
372 373 3.848975 ACCAGAGAGAAGGAACATGGATT 59.151 43.478 0.00 0.00 0.00 3.01
373 374 4.080638 ACCAGAGAGAAGGAACATGGATTC 60.081 45.833 0.00 0.00 0.00 2.52
374 375 4.163839 CCAGAGAGAAGGAACATGGATTCT 59.836 45.833 0.00 0.62 34.78 2.40
375 376 5.339035 CCAGAGAGAAGGAACATGGATTCTT 60.339 44.000 0.00 0.00 32.31 2.52
376 377 5.816777 CAGAGAGAAGGAACATGGATTCTTC 59.183 44.000 11.87 11.87 32.31 2.87
377 378 5.104569 AGAGAGAAGGAACATGGATTCTTCC 60.105 44.000 14.82 10.09 42.94 3.46
378 379 4.080072 AGAGAAGGAACATGGATTCTTCCC 60.080 45.833 14.82 6.68 41.83 3.97
379 380 3.053320 AGAAGGAACATGGATTCTTCCCC 60.053 47.826 14.82 6.22 41.83 4.81
380 381 1.570979 AGGAACATGGATTCTTCCCCC 59.429 52.381 8.10 0.00 41.83 5.40
404 405 2.503061 CCGGAGTGGCAGATGGAG 59.497 66.667 0.00 0.00 0.00 3.86
405 406 2.503061 CGGAGTGGCAGATGGAGG 59.497 66.667 0.00 0.00 0.00 4.30
406 407 2.914289 GGAGTGGCAGATGGAGGG 59.086 66.667 0.00 0.00 0.00 4.30
407 408 2.750657 GGAGTGGCAGATGGAGGGG 61.751 68.421 0.00 0.00 0.00 4.79
408 409 1.690633 GAGTGGCAGATGGAGGGGA 60.691 63.158 0.00 0.00 0.00 4.81
409 410 1.005289 AGTGGCAGATGGAGGGGAT 59.995 57.895 0.00 0.00 0.00 3.85
410 411 1.150081 GTGGCAGATGGAGGGGATG 59.850 63.158 0.00 0.00 0.00 3.51
411 412 2.114838 GGCAGATGGAGGGGATGC 59.885 66.667 0.00 0.00 36.16 3.91
412 413 2.281345 GCAGATGGAGGGGATGCG 60.281 66.667 0.00 0.00 0.00 4.73
413 414 2.811514 GCAGATGGAGGGGATGCGA 61.812 63.158 0.00 0.00 0.00 5.10
414 415 1.832219 CAGATGGAGGGGATGCGAA 59.168 57.895 0.00 0.00 0.00 4.70
415 416 0.399454 CAGATGGAGGGGATGCGAAT 59.601 55.000 0.00 0.00 0.00 3.34
416 417 0.689623 AGATGGAGGGGATGCGAATC 59.310 55.000 0.00 0.00 0.00 2.52
417 418 0.322008 GATGGAGGGGATGCGAATCC 60.322 60.000 14.82 14.82 39.99 3.01
418 419 1.061905 ATGGAGGGGATGCGAATCCA 61.062 55.000 24.31 4.78 43.82 3.41
419 420 1.227973 GGAGGGGATGCGAATCCAC 60.228 63.158 24.31 21.39 44.49 4.02
420 421 1.526887 GAGGGGATGCGAATCCACA 59.473 57.895 27.12 0.00 46.55 4.17
421 422 0.107214 GAGGGGATGCGAATCCACAA 60.107 55.000 27.12 0.00 46.55 3.33
422 423 0.107017 AGGGGATGCGAATCCACAAG 60.107 55.000 27.12 0.00 46.55 3.16
423 424 1.728490 GGGGATGCGAATCCACAAGC 61.728 60.000 24.31 5.92 43.60 4.01
424 425 0.749454 GGGATGCGAATCCACAAGCT 60.749 55.000 24.31 0.00 42.49 3.74
425 426 1.098050 GGATGCGAATCCACAAGCTT 58.902 50.000 18.33 0.00 40.43 3.74
426 427 1.202222 GGATGCGAATCCACAAGCTTG 60.202 52.381 24.84 24.84 40.43 4.01
427 428 1.470098 GATGCGAATCCACAAGCTTGT 59.530 47.619 26.36 26.36 43.36 3.16
428 429 0.874390 TGCGAATCCACAAGCTTGTC 59.126 50.000 28.97 16.19 39.91 3.18
429 430 0.179215 GCGAATCCACAAGCTTGTCG 60.179 55.000 28.97 26.65 39.91 4.35
430 431 0.443869 CGAATCCACAAGCTTGTCGG 59.556 55.000 28.97 28.48 39.91 4.79
431 432 1.523758 GAATCCACAAGCTTGTCGGT 58.476 50.000 30.39 21.28 39.91 4.69
437 438 1.670811 CACAAGCTTGTCGGTGAAGTT 59.329 47.619 28.97 0.71 39.91 2.66
440 441 2.325583 AGCTTGTCGGTGAAGTTTGA 57.674 45.000 0.00 0.00 0.00 2.69
444 445 1.961793 TGTCGGTGAAGTTTGAAGGG 58.038 50.000 0.00 0.00 0.00 3.95
445 446 1.235724 GTCGGTGAAGTTTGAAGGGG 58.764 55.000 0.00 0.00 0.00 4.79
449 450 2.486548 CGGTGAAGTTTGAAGGGGAGAA 60.487 50.000 0.00 0.00 0.00 2.87
450 451 3.767711 GGTGAAGTTTGAAGGGGAGAAT 58.232 45.455 0.00 0.00 0.00 2.40
469 470 0.468226 TTTGTCATAGCCGCCTAGGG 59.532 55.000 11.72 0.14 41.48 3.53
485 486 4.444449 GCCTAGGGTTAGAAACATAGTGGG 60.444 50.000 11.72 0.00 0.00 4.61
515 516 4.261867 CCGCCTAGGCTTTTGTTTTTACTT 60.262 41.667 30.55 0.00 39.32 2.24
519 520 5.691754 CCTAGGCTTTTGTTTTTACTTGCAG 59.308 40.000 0.00 0.00 0.00 4.41
604 605 3.436700 GGCAATACAATAGCCCACAAC 57.563 47.619 0.00 0.00 42.58 3.32
606 607 3.194542 GGCAATACAATAGCCCACAACAA 59.805 43.478 0.00 0.00 42.58 2.83
630 634 1.468520 AGAAAAATCCACACGGCGATG 59.531 47.619 16.62 11.65 0.00 3.84
634 638 2.499205 TCCACACGGCGATGGATC 59.501 61.111 26.11 0.00 40.17 3.36
643 647 4.273811 CGATGGATCGGCAGATGG 57.726 61.111 3.36 0.00 45.93 3.51
644 648 2.031516 CGATGGATCGGCAGATGGC 61.032 63.158 3.36 0.00 45.93 4.40
653 657 2.817834 GCAGATGGCGCGGTACAA 60.818 61.111 8.83 0.00 0.00 2.41
720 727 4.077184 TCCCGCCCGTGACATCAC 62.077 66.667 1.70 1.70 43.15 3.06
743 750 3.233507 TCCTTCAAATTTCAAGCCAGCT 58.766 40.909 0.00 0.00 0.00 4.24
760 767 3.917988 CAGCTTTTGGAGATTGGTTTCC 58.082 45.455 0.00 0.00 0.00 3.13
775 789 0.104144 TTTCCCCTTCCTCCTCACCA 60.104 55.000 0.00 0.00 0.00 4.17
811 825 0.599204 CAACCTTTGCAGCAAGCCAG 60.599 55.000 8.12 3.06 44.83 4.85
829 843 2.736826 GCCCCTTCCTCCTTCCTCG 61.737 68.421 0.00 0.00 0.00 4.63
957 984 4.331108 GAGAGAAACAAAAGGCTCTCCAT 58.669 43.478 0.00 0.00 44.68 3.41
964 991 3.840666 ACAAAAGGCTCTCCATCTCTACA 59.159 43.478 0.00 0.00 33.74 2.74
1182 1217 2.455032 GAGATCATCAAGACCGACGTG 58.545 52.381 0.00 0.00 0.00 4.49
1444 1488 3.009714 AGGAAGGAGGGTTCGGCC 61.010 66.667 0.00 0.00 0.00 6.13
1623 1679 0.676782 GCGCCTCCTTTCTGGCTTAA 60.677 55.000 0.00 0.00 46.42 1.85
1641 1697 5.235401 GGCTTAATTAGTTAGTCAGAGCTGC 59.765 44.000 0.00 0.00 0.00 5.25
1727 1783 6.663734 TCTTTTCTCTCTTCTTCCCTTTGTT 58.336 36.000 0.00 0.00 0.00 2.83
1797 2021 8.632679 CCATGGTTGCAAATACTAGTGATTATT 58.367 33.333 5.39 0.00 0.00 1.40
1948 2178 6.533730 AGAACAATCAGAACAGTGATGGTTA 58.466 36.000 6.60 0.00 46.72 2.85
1956 2186 6.601613 TCAGAACAGTGATGGTTACAAAACTT 59.398 34.615 0.00 0.00 35.81 2.66
1978 2208 1.736645 CGGTACCGGTGCACTTCTG 60.737 63.158 27.00 5.41 35.56 3.02
2024 4011 5.945191 TGCACTTGATCATCATTCCAAGTAA 59.055 36.000 0.00 0.00 44.97 2.24
2027 4014 5.888161 ACTTGATCATCATTCCAAGTAACCC 59.112 40.000 0.00 0.00 44.93 4.11
2030 4017 4.927267 TCATCATTCCAAGTAACCCTGT 57.073 40.909 0.00 0.00 0.00 4.00
2061 4048 6.713450 GGAAGGAAAACCATAGTACTCAAACA 59.287 38.462 0.00 0.00 0.00 2.83
2336 4325 4.643795 ATGCAGCGGTGTAAGCAT 57.356 50.000 17.07 10.35 42.42 3.79
2437 4590 5.774498 AAACAAGATCCAGTGGTTCTTTC 57.226 39.130 26.35 10.51 39.04 2.62
2448 4615 6.889722 TCCAGTGGTTCTTTCTAATAATTGGG 59.110 38.462 9.54 0.00 0.00 4.12
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.783227 AGATAGGAAACCACAAAGGAGCTA 59.217 41.667 0.00 0.00 41.22 3.32
1 2 3.589288 AGATAGGAAACCACAAAGGAGCT 59.411 43.478 0.00 0.00 41.22 4.09
2 3 3.956744 AGATAGGAAACCACAAAGGAGC 58.043 45.455 0.00 0.00 41.22 4.70
3 4 4.156739 GCAAGATAGGAAACCACAAAGGAG 59.843 45.833 0.00 0.00 41.22 3.69
4 5 4.079253 GCAAGATAGGAAACCACAAAGGA 58.921 43.478 0.00 0.00 41.22 3.36
5 6 3.826157 TGCAAGATAGGAAACCACAAAGG 59.174 43.478 0.00 0.00 45.67 3.11
6 7 5.452078 TTGCAAGATAGGAAACCACAAAG 57.548 39.130 0.00 0.00 0.00 2.77
7 8 5.860941 TTTGCAAGATAGGAAACCACAAA 57.139 34.783 0.00 0.00 0.00 2.83
8 9 7.531857 TTATTTGCAAGATAGGAAACCACAA 57.468 32.000 0.00 0.00 31.58 3.33
9 10 7.531857 TTTATTTGCAAGATAGGAAACCACA 57.468 32.000 0.00 0.00 31.58 4.17
10 11 8.872845 CAATTTATTTGCAAGATAGGAAACCAC 58.127 33.333 0.00 0.00 31.58 4.16
11 12 8.592809 ACAATTTATTTGCAAGATAGGAAACCA 58.407 29.630 0.00 0.00 39.03 3.67
16 17 9.679661 TGTCTACAATTTATTTGCAAGATAGGA 57.320 29.630 0.00 0.00 39.03 2.94
19 20 9.734620 GCATGTCTACAATTTATTTGCAAGATA 57.265 29.630 0.00 0.00 39.03 1.98
20 21 7.707893 GGCATGTCTACAATTTATTTGCAAGAT 59.292 33.333 0.00 0.00 39.03 2.40
21 22 7.035004 GGCATGTCTACAATTTATTTGCAAGA 58.965 34.615 0.00 0.00 39.03 3.02
22 23 6.256321 GGGCATGTCTACAATTTATTTGCAAG 59.744 38.462 0.00 0.00 39.03 4.01
23 24 6.105333 GGGCATGTCTACAATTTATTTGCAA 58.895 36.000 0.00 0.00 39.03 4.08
24 25 5.395103 GGGGCATGTCTACAATTTATTTGCA 60.395 40.000 0.00 0.00 39.03 4.08
25 26 5.049828 GGGGCATGTCTACAATTTATTTGC 58.950 41.667 0.00 0.00 39.03 3.68
26 27 5.128499 TGGGGGCATGTCTACAATTTATTTG 59.872 40.000 0.00 0.00 41.36 2.32
27 28 5.276440 TGGGGGCATGTCTACAATTTATTT 58.724 37.500 0.00 0.00 0.00 1.40
28 29 4.877773 TGGGGGCATGTCTACAATTTATT 58.122 39.130 0.00 0.00 0.00 1.40
29 30 4.534647 TGGGGGCATGTCTACAATTTAT 57.465 40.909 0.00 0.00 0.00 1.40
30 31 4.534647 ATGGGGGCATGTCTACAATTTA 57.465 40.909 0.00 0.00 0.00 1.40
31 32 2.917713 TGGGGGCATGTCTACAATTT 57.082 45.000 0.00 0.00 0.00 1.82
32 33 3.403228 AATGGGGGCATGTCTACAATT 57.597 42.857 0.00 0.00 0.00 2.32
33 34 3.403228 AAATGGGGGCATGTCTACAAT 57.597 42.857 0.00 0.00 0.00 2.71
34 35 2.917713 AAATGGGGGCATGTCTACAA 57.082 45.000 0.00 0.00 0.00 2.41
35 36 4.079500 TCAATAAATGGGGGCATGTCTACA 60.080 41.667 0.00 0.00 0.00 2.74
36 37 4.278419 GTCAATAAATGGGGGCATGTCTAC 59.722 45.833 0.00 0.00 0.00 2.59
37 38 4.469657 GTCAATAAATGGGGGCATGTCTA 58.530 43.478 0.00 0.00 0.00 2.59
38 39 3.299503 GTCAATAAATGGGGGCATGTCT 58.700 45.455 0.00 0.00 0.00 3.41
39 40 2.365293 GGTCAATAAATGGGGGCATGTC 59.635 50.000 0.00 0.00 0.00 3.06
40 41 2.023113 AGGTCAATAAATGGGGGCATGT 60.023 45.455 0.00 0.00 0.00 3.21
41 42 2.366266 CAGGTCAATAAATGGGGGCATG 59.634 50.000 0.00 0.00 0.00 4.06
42 43 2.247111 TCAGGTCAATAAATGGGGGCAT 59.753 45.455 0.00 0.00 0.00 4.40
43 44 1.643286 TCAGGTCAATAAATGGGGGCA 59.357 47.619 0.00 0.00 0.00 5.36
44 45 2.452600 TCAGGTCAATAAATGGGGGC 57.547 50.000 0.00 0.00 0.00 5.80
45 46 4.079787 TCTCTTCAGGTCAATAAATGGGGG 60.080 45.833 0.00 0.00 0.00 5.40
46 47 5.104360 TCTCTCTTCAGGTCAATAAATGGGG 60.104 44.000 0.00 0.00 0.00 4.96
47 48 5.994250 TCTCTCTTCAGGTCAATAAATGGG 58.006 41.667 0.00 0.00 0.00 4.00
48 49 6.038050 GCTTCTCTCTTCAGGTCAATAAATGG 59.962 42.308 0.00 0.00 0.00 3.16
49 50 6.238049 CGCTTCTCTCTTCAGGTCAATAAATG 60.238 42.308 0.00 0.00 0.00 2.32
50 51 5.814705 CGCTTCTCTCTTCAGGTCAATAAAT 59.185 40.000 0.00 0.00 0.00 1.40
51 52 5.171476 CGCTTCTCTCTTCAGGTCAATAAA 58.829 41.667 0.00 0.00 0.00 1.40
52 53 4.748892 CGCTTCTCTCTTCAGGTCAATAA 58.251 43.478 0.00 0.00 0.00 1.40
53 54 3.429547 GCGCTTCTCTCTTCAGGTCAATA 60.430 47.826 0.00 0.00 0.00 1.90
54 55 2.676463 GCGCTTCTCTCTTCAGGTCAAT 60.676 50.000 0.00 0.00 0.00 2.57
55 56 1.337260 GCGCTTCTCTCTTCAGGTCAA 60.337 52.381 0.00 0.00 0.00 3.18
56 57 0.244994 GCGCTTCTCTCTTCAGGTCA 59.755 55.000 0.00 0.00 0.00 4.02
57 58 0.530288 AGCGCTTCTCTCTTCAGGTC 59.470 55.000 2.64 0.00 0.00 3.85
58 59 0.972883 AAGCGCTTCTCTCTTCAGGT 59.027 50.000 18.98 0.00 0.00 4.00
59 60 1.357907 CAAGCGCTTCTCTCTTCAGG 58.642 55.000 22.21 0.38 0.00 3.86
60 61 1.357907 CCAAGCGCTTCTCTCTTCAG 58.642 55.000 22.21 5.45 0.00 3.02
61 62 0.671781 GCCAAGCGCTTCTCTCTTCA 60.672 55.000 22.21 0.00 0.00 3.02
62 63 0.671781 TGCCAAGCGCTTCTCTCTTC 60.672 55.000 22.21 4.88 38.78 2.87
63 64 0.035630 ATGCCAAGCGCTTCTCTCTT 60.036 50.000 22.21 4.99 38.78 2.85
64 65 0.035630 AATGCCAAGCGCTTCTCTCT 60.036 50.000 22.21 1.86 38.78 3.10
65 66 1.656652 TAATGCCAAGCGCTTCTCTC 58.343 50.000 22.21 9.92 38.78 3.20
66 67 1.945394 CATAATGCCAAGCGCTTCTCT 59.055 47.619 22.21 5.84 38.78 3.10
67 68 1.942657 TCATAATGCCAAGCGCTTCTC 59.057 47.619 22.21 15.15 38.78 2.87
68 69 2.042686 TCATAATGCCAAGCGCTTCT 57.957 45.000 22.21 0.00 38.78 2.85
69 70 2.724349 CTTCATAATGCCAAGCGCTTC 58.276 47.619 22.21 11.09 38.78 3.86
70 71 1.202336 GCTTCATAATGCCAAGCGCTT 60.202 47.619 18.98 18.98 38.78 4.68
71 72 0.383231 GCTTCATAATGCCAAGCGCT 59.617 50.000 2.64 2.64 38.78 5.92
72 73 0.383231 AGCTTCATAATGCCAAGCGC 59.617 50.000 0.00 0.00 45.99 5.92
73 74 1.672363 TGAGCTTCATAATGCCAAGCG 59.328 47.619 0.00 0.00 45.99 4.68
74 75 5.240183 TCTTATGAGCTTCATAATGCCAAGC 59.760 40.000 14.80 0.00 45.21 4.01
75 76 6.872628 TCTTATGAGCTTCATAATGCCAAG 57.127 37.500 14.80 7.76 45.21 3.61
76 77 7.643569 TTTCTTATGAGCTTCATAATGCCAA 57.356 32.000 14.80 7.05 45.21 4.52
77 78 7.722728 AGATTTCTTATGAGCTTCATAATGCCA 59.277 33.333 14.80 0.00 45.21 4.92
78 79 8.108551 AGATTTCTTATGAGCTTCATAATGCC 57.891 34.615 14.80 7.09 45.21 4.40
79 80 8.781196 TGAGATTTCTTATGAGCTTCATAATGC 58.219 33.333 14.80 0.00 45.21 3.56
84 85 9.275398 GATCTTGAGATTTCTTATGAGCTTCAT 57.725 33.333 0.00 0.00 36.56 2.57
85 86 8.484575 AGATCTTGAGATTTCTTATGAGCTTCA 58.515 33.333 0.00 0.00 31.61 3.02
86 87 8.891671 AGATCTTGAGATTTCTTATGAGCTTC 57.108 34.615 0.00 0.00 31.61 3.86
87 88 9.111613 CAAGATCTTGAGATTTCTTATGAGCTT 57.888 33.333 28.13 10.81 40.40 3.74
88 89 8.484575 TCAAGATCTTGAGATTTCTTATGAGCT 58.515 33.333 30.05 0.00 43.90 4.09
89 90 8.659925 TCAAGATCTTGAGATTTCTTATGAGC 57.340 34.615 30.05 0.00 43.90 4.26
102 103 7.316512 GCCGTTTGGTCTTCAAGATCTTGAG 62.317 48.000 31.21 25.09 43.10 3.02
103 104 4.065088 CCGTTTGGTCTTCAAGATCTTGA 58.935 43.478 30.05 30.05 46.72 3.02
104 105 3.365364 GCCGTTTGGTCTTCAAGATCTTG 60.365 47.826 26.56 26.56 38.61 3.02
105 106 2.814336 GCCGTTTGGTCTTCAAGATCTT 59.186 45.455 0.88 0.88 36.62 2.40
106 107 2.427506 GCCGTTTGGTCTTCAAGATCT 58.572 47.619 0.00 0.00 36.62 2.75
107 108 1.128692 CGCCGTTTGGTCTTCAAGATC 59.871 52.381 0.00 0.00 36.62 2.75
108 109 1.156736 CGCCGTTTGGTCTTCAAGAT 58.843 50.000 0.00 0.00 36.62 2.40
109 110 0.882927 CCGCCGTTTGGTCTTCAAGA 60.883 55.000 0.00 0.00 36.62 3.02
110 111 1.574428 CCGCCGTTTGGTCTTCAAG 59.426 57.895 0.00 0.00 36.62 3.02
111 112 1.894756 CCCGCCGTTTGGTCTTCAA 60.895 57.895 0.00 0.00 37.67 2.69
112 113 2.281208 CCCGCCGTTTGGTCTTCA 60.281 61.111 0.00 0.00 37.67 3.02
113 114 3.733960 GCCCGCCGTTTGGTCTTC 61.734 66.667 0.00 0.00 37.67 2.87
114 115 4.572571 TGCCCGCCGTTTGGTCTT 62.573 61.111 0.00 0.00 37.67 3.01
115 116 3.935090 TATTTGCCCGCCGTTTGGTCT 62.935 52.381 0.00 0.00 37.67 3.85
116 117 1.587933 TATTTGCCCGCCGTTTGGTC 61.588 55.000 0.00 0.00 37.67 4.02
117 118 1.604023 TATTTGCCCGCCGTTTGGT 60.604 52.632 0.00 0.00 37.67 3.67
118 119 1.153920 GTATTTGCCCGCCGTTTGG 60.154 57.895 0.00 0.00 38.77 3.28
119 120 1.513160 CGTATTTGCCCGCCGTTTG 60.513 57.895 0.00 0.00 0.00 2.93
120 121 2.692766 CCGTATTTGCCCGCCGTTT 61.693 57.895 0.00 0.00 0.00 3.60
121 122 3.128845 CCGTATTTGCCCGCCGTT 61.129 61.111 0.00 0.00 0.00 4.44
124 125 3.887868 CTGCCGTATTTGCCCGCC 61.888 66.667 0.00 0.00 0.00 6.13
125 126 4.552745 GCTGCCGTATTTGCCCGC 62.553 66.667 0.00 0.00 0.00 6.13
126 127 2.823829 GAGCTGCCGTATTTGCCCG 61.824 63.158 0.00 0.00 0.00 6.13
127 128 2.481471 GGAGCTGCCGTATTTGCCC 61.481 63.158 0.00 0.00 0.00 5.36
128 129 1.452108 AGGAGCTGCCGTATTTGCC 60.452 57.895 0.00 0.00 43.43 4.52
129 130 0.744414 TCAGGAGCTGCCGTATTTGC 60.744 55.000 0.00 0.00 43.43 3.68
130 131 1.134699 TCTCAGGAGCTGCCGTATTTG 60.135 52.381 0.00 0.00 43.43 2.32
131 132 1.195115 TCTCAGGAGCTGCCGTATTT 58.805 50.000 0.00 0.00 43.43 1.40
132 133 1.418334 ATCTCAGGAGCTGCCGTATT 58.582 50.000 0.00 0.00 43.43 1.89
133 134 1.069823 CAATCTCAGGAGCTGCCGTAT 59.930 52.381 0.00 0.00 43.43 3.06
134 135 0.461548 CAATCTCAGGAGCTGCCGTA 59.538 55.000 0.00 0.00 43.43 4.02
135 136 1.220206 CAATCTCAGGAGCTGCCGT 59.780 57.895 0.00 0.00 43.43 5.68
136 137 2.178890 GCAATCTCAGGAGCTGCCG 61.179 63.158 0.00 0.00 43.43 5.69
137 138 0.467384 TAGCAATCTCAGGAGCTGCC 59.533 55.000 0.00 0.00 37.56 4.85
138 139 2.211806 CTTAGCAATCTCAGGAGCTGC 58.788 52.381 0.00 0.00 37.94 5.25
139 140 3.540314 ACTTAGCAATCTCAGGAGCTG 57.460 47.619 0.00 0.00 37.94 4.24
140 141 4.566426 AAACTTAGCAATCTCAGGAGCT 57.434 40.909 0.00 0.00 40.92 4.09
141 142 6.934048 AATAAACTTAGCAATCTCAGGAGC 57.066 37.500 0.00 0.00 0.00 4.70
161 162 9.345517 CGTCCGACCTATTATCGAAATAAAATA 57.654 33.333 0.00 0.00 42.25 1.40
162 163 7.330208 CCGTCCGACCTATTATCGAAATAAAAT 59.670 37.037 0.00 0.00 42.25 1.82
163 164 6.642131 CCGTCCGACCTATTATCGAAATAAAA 59.358 38.462 0.00 0.00 42.25 1.52
164 165 6.151691 CCGTCCGACCTATTATCGAAATAAA 58.848 40.000 0.00 0.00 42.25 1.40
165 166 5.241506 ACCGTCCGACCTATTATCGAAATAA 59.758 40.000 0.00 0.00 42.25 1.40
166 167 4.761739 ACCGTCCGACCTATTATCGAAATA 59.238 41.667 0.00 0.00 42.25 1.40
167 168 3.571401 ACCGTCCGACCTATTATCGAAAT 59.429 43.478 0.00 0.00 42.25 2.17
168 169 2.951642 ACCGTCCGACCTATTATCGAAA 59.048 45.455 0.00 0.00 42.25 3.46
169 170 2.575532 ACCGTCCGACCTATTATCGAA 58.424 47.619 0.00 0.00 42.25 3.71
170 171 2.260844 ACCGTCCGACCTATTATCGA 57.739 50.000 0.00 0.00 42.25 3.59
171 172 3.360249 AAACCGTCCGACCTATTATCG 57.640 47.619 0.00 0.00 39.33 2.92
172 173 4.941657 AGAAAACCGTCCGACCTATTATC 58.058 43.478 0.00 0.00 0.00 1.75
173 174 5.349061 AAGAAAACCGTCCGACCTATTAT 57.651 39.130 0.00 0.00 0.00 1.28
174 175 4.806640 AAGAAAACCGTCCGACCTATTA 57.193 40.909 0.00 0.00 0.00 0.98
175 176 3.690475 AAGAAAACCGTCCGACCTATT 57.310 42.857 0.00 0.00 0.00 1.73
176 177 3.690475 AAAGAAAACCGTCCGACCTAT 57.310 42.857 0.00 0.00 0.00 2.57
177 178 3.473923 AAAAGAAAACCGTCCGACCTA 57.526 42.857 0.00 0.00 0.00 3.08
178 179 2.336945 AAAAGAAAACCGTCCGACCT 57.663 45.000 0.00 0.00 0.00 3.85
195 196 2.288518 GCAGGGCGGAACATTGTAAAAA 60.289 45.455 0.00 0.00 0.00 1.94
196 197 1.271102 GCAGGGCGGAACATTGTAAAA 59.729 47.619 0.00 0.00 0.00 1.52
197 198 0.885196 GCAGGGCGGAACATTGTAAA 59.115 50.000 0.00 0.00 0.00 2.01
198 199 2.562125 GCAGGGCGGAACATTGTAA 58.438 52.632 0.00 0.00 0.00 2.41
199 200 4.312052 GCAGGGCGGAACATTGTA 57.688 55.556 0.00 0.00 0.00 2.41
211 212 0.321919 ATAGCATATGCCACGCAGGG 60.322 55.000 23.96 0.00 43.65 4.45
212 213 2.385013 TATAGCATATGCCACGCAGG 57.615 50.000 23.96 0.00 43.65 4.85
213 214 3.934579 TCATTATAGCATATGCCACGCAG 59.065 43.478 23.96 10.74 43.65 5.18
214 215 3.934579 CTCATTATAGCATATGCCACGCA 59.065 43.478 23.96 5.41 44.86 5.24
215 216 3.935203 ACTCATTATAGCATATGCCACGC 59.065 43.478 23.96 0.00 43.38 5.34
216 217 5.170748 TCACTCATTATAGCATATGCCACG 58.829 41.667 23.96 7.36 43.38 4.94
217 218 6.019237 CGATCACTCATTATAGCATATGCCAC 60.019 42.308 23.96 0.00 43.38 5.01
218 219 6.044682 CGATCACTCATTATAGCATATGCCA 58.955 40.000 23.96 11.65 43.38 4.92
219 220 6.045318 ACGATCACTCATTATAGCATATGCC 58.955 40.000 23.96 6.56 43.38 4.40
220 221 7.702348 TGTACGATCACTCATTATAGCATATGC 59.298 37.037 20.36 20.36 42.49 3.14
221 222 9.573133 TTGTACGATCACTCATTATAGCATATG 57.427 33.333 0.00 0.00 0.00 1.78
223 224 9.406828 GTTTGTACGATCACTCATTATAGCATA 57.593 33.333 0.00 0.00 0.00 3.14
224 225 7.926018 TGTTTGTACGATCACTCATTATAGCAT 59.074 33.333 0.00 0.00 0.00 3.79
225 226 7.262048 TGTTTGTACGATCACTCATTATAGCA 58.738 34.615 0.00 0.00 0.00 3.49
226 227 7.694388 TGTTTGTACGATCACTCATTATAGC 57.306 36.000 0.00 0.00 0.00 2.97
231 232 9.825972 CTTAAAATGTTTGTACGATCACTCATT 57.174 29.630 0.00 0.00 0.00 2.57
232 233 8.999431 ACTTAAAATGTTTGTACGATCACTCAT 58.001 29.630 0.00 0.00 0.00 2.90
233 234 8.373048 ACTTAAAATGTTTGTACGATCACTCA 57.627 30.769 0.00 0.00 0.00 3.41
234 235 9.103048 CAACTTAAAATGTTTGTACGATCACTC 57.897 33.333 0.00 0.00 0.00 3.51
235 236 8.832521 TCAACTTAAAATGTTTGTACGATCACT 58.167 29.630 0.00 0.00 0.00 3.41
236 237 8.996988 TCAACTTAAAATGTTTGTACGATCAC 57.003 30.769 0.00 0.00 0.00 3.06
251 252 9.802039 AGGCCCGATATATTAATCAACTTAAAA 57.198 29.630 0.00 0.00 33.15 1.52
252 253 9.802039 AAGGCCCGATATATTAATCAACTTAAA 57.198 29.630 0.00 0.00 33.15 1.52
253 254 9.802039 AAAGGCCCGATATATTAATCAACTTAA 57.198 29.630 0.00 0.00 33.92 1.85
255 256 9.802039 TTAAAGGCCCGATATATTAATCAACTT 57.198 29.630 0.00 0.00 0.00 2.66
256 257 9.802039 TTTAAAGGCCCGATATATTAATCAACT 57.198 29.630 0.00 0.00 0.00 3.16
283 284 0.598065 GGCGGATGACAGTGCTTTTT 59.402 50.000 0.00 0.00 0.00 1.94
284 285 1.244019 GGGCGGATGACAGTGCTTTT 61.244 55.000 0.00 0.00 0.00 2.27
285 286 1.675641 GGGCGGATGACAGTGCTTT 60.676 57.895 0.00 0.00 0.00 3.51
286 287 2.045926 GGGCGGATGACAGTGCTT 60.046 61.111 0.00 0.00 0.00 3.91
287 288 2.809861 CTTGGGCGGATGACAGTGCT 62.810 60.000 0.00 0.00 0.00 4.40
288 289 2.359850 TTGGGCGGATGACAGTGC 60.360 61.111 0.00 0.00 0.00 4.40
289 290 2.401766 GCTTGGGCGGATGACAGTG 61.402 63.158 0.00 0.00 0.00 3.66
290 291 2.045926 GCTTGGGCGGATGACAGT 60.046 61.111 0.00 0.00 0.00 3.55
303 304 4.641645 TCCCAGGTGTGGCGCTTG 62.642 66.667 7.64 0.00 43.44 4.01
304 305 4.335647 CTCCCAGGTGTGGCGCTT 62.336 66.667 7.64 0.00 43.44 4.68
307 308 4.394712 GTCCTCCCAGGTGTGGCG 62.395 72.222 0.00 0.00 43.44 5.69
308 309 4.035102 GGTCCTCCCAGGTGTGGC 62.035 72.222 0.00 0.00 43.44 5.01
309 310 0.546747 TTAGGTCCTCCCAGGTGTGG 60.547 60.000 0.00 0.00 44.56 4.17
310 311 1.358152 TTTAGGTCCTCCCAGGTGTG 58.642 55.000 0.00 0.00 36.53 3.82
311 312 2.107726 GTTTTTAGGTCCTCCCAGGTGT 59.892 50.000 0.00 0.00 36.53 4.16
312 313 2.554564 GGTTTTTAGGTCCTCCCAGGTG 60.555 54.545 0.00 0.00 36.53 4.00
313 314 1.709115 GGTTTTTAGGTCCTCCCAGGT 59.291 52.381 0.00 0.00 36.53 4.00
314 315 1.005569 GGGTTTTTAGGTCCTCCCAGG 59.994 57.143 7.59 0.00 36.46 4.45
315 316 1.993301 AGGGTTTTTAGGTCCTCCCAG 59.007 52.381 13.79 0.00 37.56 4.45
316 317 2.143231 AGGGTTTTTAGGTCCTCCCA 57.857 50.000 13.79 0.00 37.56 4.37
317 318 3.187942 ACTAGGGTTTTTAGGTCCTCCC 58.812 50.000 4.64 4.64 35.56 4.30
318 319 4.081031 CAGACTAGGGTTTTTAGGTCCTCC 60.081 50.000 0.00 0.00 0.00 4.30
319 320 4.776308 TCAGACTAGGGTTTTTAGGTCCTC 59.224 45.833 0.00 0.00 0.00 3.71
320 321 4.759953 TCAGACTAGGGTTTTTAGGTCCT 58.240 43.478 0.00 0.00 0.00 3.85
321 322 5.012871 AGTTCAGACTAGGGTTTTTAGGTCC 59.987 44.000 0.00 0.00 33.32 4.46
322 323 6.111669 AGTTCAGACTAGGGTTTTTAGGTC 57.888 41.667 0.00 0.00 33.32 3.85
323 324 6.556116 TGTAGTTCAGACTAGGGTTTTTAGGT 59.444 38.462 0.00 0.00 38.98 3.08
324 325 7.001099 TGTAGTTCAGACTAGGGTTTTTAGG 57.999 40.000 0.00 0.00 38.98 2.69
325 326 8.771766 GTTTGTAGTTCAGACTAGGGTTTTTAG 58.228 37.037 0.00 0.00 38.98 1.85
326 327 7.716560 GGTTTGTAGTTCAGACTAGGGTTTTTA 59.283 37.037 0.00 0.00 38.98 1.52
327 328 6.544931 GGTTTGTAGTTCAGACTAGGGTTTTT 59.455 38.462 0.00 0.00 38.98 1.94
328 329 6.060136 GGTTTGTAGTTCAGACTAGGGTTTT 58.940 40.000 0.00 0.00 38.98 2.43
329 330 5.131475 TGGTTTGTAGTTCAGACTAGGGTTT 59.869 40.000 0.00 0.00 38.98 3.27
330 331 4.657039 TGGTTTGTAGTTCAGACTAGGGTT 59.343 41.667 0.00 0.00 38.98 4.11
331 332 4.228824 TGGTTTGTAGTTCAGACTAGGGT 58.771 43.478 0.00 0.00 38.98 4.34
332 333 4.527038 TCTGGTTTGTAGTTCAGACTAGGG 59.473 45.833 4.48 0.00 39.19 3.53
333 334 5.477291 TCTCTGGTTTGTAGTTCAGACTAGG 59.523 44.000 4.48 0.00 39.19 3.02
334 335 6.431543 TCTCTCTGGTTTGTAGTTCAGACTAG 59.568 42.308 0.00 0.00 38.98 2.57
335 336 6.304624 TCTCTCTGGTTTGTAGTTCAGACTA 58.695 40.000 0.00 0.00 37.33 2.59
336 337 5.141182 TCTCTCTGGTTTGTAGTTCAGACT 58.859 41.667 0.00 0.00 39.97 3.24
337 338 5.455056 TCTCTCTGGTTTGTAGTTCAGAC 57.545 43.478 0.00 0.00 33.36 3.51
338 339 5.011125 CCTTCTCTCTGGTTTGTAGTTCAGA 59.989 44.000 0.00 0.00 35.32 3.27
339 340 5.011125 TCCTTCTCTCTGGTTTGTAGTTCAG 59.989 44.000 0.00 0.00 0.00 3.02
340 341 4.899457 TCCTTCTCTCTGGTTTGTAGTTCA 59.101 41.667 0.00 0.00 0.00 3.18
341 342 5.470047 TCCTTCTCTCTGGTTTGTAGTTC 57.530 43.478 0.00 0.00 0.00 3.01
342 343 5.130477 TGTTCCTTCTCTCTGGTTTGTAGTT 59.870 40.000 0.00 0.00 0.00 2.24
343 344 4.654262 TGTTCCTTCTCTCTGGTTTGTAGT 59.346 41.667 0.00 0.00 0.00 2.73
344 345 5.215252 TGTTCCTTCTCTCTGGTTTGTAG 57.785 43.478 0.00 0.00 0.00 2.74
345 346 5.513094 CCATGTTCCTTCTCTCTGGTTTGTA 60.513 44.000 0.00 0.00 0.00 2.41
346 347 4.392940 CATGTTCCTTCTCTCTGGTTTGT 58.607 43.478 0.00 0.00 0.00 2.83
347 348 3.755378 CCATGTTCCTTCTCTCTGGTTTG 59.245 47.826 0.00 0.00 0.00 2.93
348 349 3.652869 TCCATGTTCCTTCTCTCTGGTTT 59.347 43.478 0.00 0.00 0.00 3.27
349 350 3.251484 TCCATGTTCCTTCTCTCTGGTT 58.749 45.455 0.00 0.00 0.00 3.67
350 351 2.907892 TCCATGTTCCTTCTCTCTGGT 58.092 47.619 0.00 0.00 0.00 4.00
351 352 4.163839 AGAATCCATGTTCCTTCTCTCTGG 59.836 45.833 0.00 0.00 0.00 3.86
352 353 5.356291 AGAATCCATGTTCCTTCTCTCTG 57.644 43.478 0.00 0.00 0.00 3.35
353 354 5.104569 GGAAGAATCCATGTTCCTTCTCTCT 60.105 44.000 5.08 0.00 45.79 3.10
354 355 5.122519 GGAAGAATCCATGTTCCTTCTCTC 58.877 45.833 5.08 3.04 45.79 3.20
355 356 5.109500 GGAAGAATCCATGTTCCTTCTCT 57.891 43.478 5.08 0.00 45.79 3.10
387 388 2.503061 CTCCATCTGCCACTCCGG 59.497 66.667 0.00 0.00 38.11 5.14
388 389 2.503061 CCTCCATCTGCCACTCCG 59.497 66.667 0.00 0.00 0.00 4.63
389 390 2.750657 CCCCTCCATCTGCCACTCC 61.751 68.421 0.00 0.00 0.00 3.85
390 391 1.059006 ATCCCCTCCATCTGCCACTC 61.059 60.000 0.00 0.00 0.00 3.51
391 392 1.005289 ATCCCCTCCATCTGCCACT 59.995 57.895 0.00 0.00 0.00 4.00
392 393 1.150081 CATCCCCTCCATCTGCCAC 59.850 63.158 0.00 0.00 0.00 5.01
393 394 2.760378 GCATCCCCTCCATCTGCCA 61.760 63.158 0.00 0.00 0.00 4.92
394 395 2.114838 GCATCCCCTCCATCTGCC 59.885 66.667 0.00 0.00 0.00 4.85
395 396 2.281345 CGCATCCCCTCCATCTGC 60.281 66.667 0.00 0.00 0.00 4.26
396 397 0.399454 ATTCGCATCCCCTCCATCTG 59.601 55.000 0.00 0.00 0.00 2.90
397 398 0.689623 GATTCGCATCCCCTCCATCT 59.310 55.000 0.00 0.00 0.00 2.90
398 399 0.322008 GGATTCGCATCCCCTCCATC 60.322 60.000 2.20 0.00 43.29 3.51
399 400 1.763770 GGATTCGCATCCCCTCCAT 59.236 57.895 2.20 0.00 43.29 3.41
400 401 3.240491 GGATTCGCATCCCCTCCA 58.760 61.111 2.20 0.00 43.29 3.86
407 408 1.470098 ACAAGCTTGTGGATTCGCATC 59.530 47.619 30.66 0.00 40.49 3.91
408 409 1.470098 GACAAGCTTGTGGATTCGCAT 59.530 47.619 35.67 7.75 42.43 4.73
409 410 0.874390 GACAAGCTTGTGGATTCGCA 59.126 50.000 35.67 0.00 42.43 5.10
410 411 0.179215 CGACAAGCTTGTGGATTCGC 60.179 55.000 35.67 18.08 42.43 4.70
411 412 0.443869 CCGACAAGCTTGTGGATTCG 59.556 55.000 34.76 28.78 42.43 3.34
412 413 1.197721 CACCGACAAGCTTGTGGATTC 59.802 52.381 34.89 22.79 42.43 2.52
413 414 1.202758 TCACCGACAAGCTTGTGGATT 60.203 47.619 34.89 23.58 42.43 3.01
414 415 0.396435 TCACCGACAAGCTTGTGGAT 59.604 50.000 34.89 23.88 42.43 3.41
415 416 0.179234 TTCACCGACAAGCTTGTGGA 59.821 50.000 34.89 24.91 42.43 4.02
416 417 0.588252 CTTCACCGACAAGCTTGTGG 59.412 55.000 35.67 32.39 42.43 4.17
417 418 1.299541 ACTTCACCGACAAGCTTGTG 58.700 50.000 35.67 23.82 42.43 3.33
418 419 2.038387 AACTTCACCGACAAGCTTGT 57.962 45.000 31.57 31.57 45.65 3.16
419 420 2.354510 TCAAACTTCACCGACAAGCTTG 59.645 45.455 24.84 24.84 31.08 4.01
420 421 2.639065 TCAAACTTCACCGACAAGCTT 58.361 42.857 0.00 0.00 0.00 3.74
421 422 2.325583 TCAAACTTCACCGACAAGCT 57.674 45.000 0.00 0.00 0.00 3.74
422 423 2.287009 CCTTCAAACTTCACCGACAAGC 60.287 50.000 0.00 0.00 0.00 4.01
423 424 2.290641 CCCTTCAAACTTCACCGACAAG 59.709 50.000 0.00 0.00 0.00 3.16
424 425 2.294074 CCCTTCAAACTTCACCGACAA 58.706 47.619 0.00 0.00 0.00 3.18
425 426 1.476110 CCCCTTCAAACTTCACCGACA 60.476 52.381 0.00 0.00 0.00 4.35
426 427 1.202722 TCCCCTTCAAACTTCACCGAC 60.203 52.381 0.00 0.00 0.00 4.79
427 428 1.071699 CTCCCCTTCAAACTTCACCGA 59.928 52.381 0.00 0.00 0.00 4.69
428 429 1.071699 TCTCCCCTTCAAACTTCACCG 59.928 52.381 0.00 0.00 0.00 4.94
429 430 2.951229 TCTCCCCTTCAAACTTCACC 57.049 50.000 0.00 0.00 0.00 4.02
430 431 5.069119 ACAAATTCTCCCCTTCAAACTTCAC 59.931 40.000 0.00 0.00 0.00 3.18
431 432 5.208121 ACAAATTCTCCCCTTCAAACTTCA 58.792 37.500 0.00 0.00 0.00 3.02
437 438 4.949856 GCTATGACAAATTCTCCCCTTCAA 59.050 41.667 0.00 0.00 0.00 2.69
440 441 3.685550 CGGCTATGACAAATTCTCCCCTT 60.686 47.826 0.00 0.00 0.00 3.95
444 445 1.604278 GGCGGCTATGACAAATTCTCC 59.396 52.381 0.00 0.00 0.00 3.71
445 446 2.565841 AGGCGGCTATGACAAATTCTC 58.434 47.619 11.03 0.00 0.00 2.87
449 450 1.072331 CCCTAGGCGGCTATGACAAAT 59.928 52.381 20.06 0.00 0.00 2.32
450 451 0.468226 CCCTAGGCGGCTATGACAAA 59.532 55.000 20.06 0.00 0.00 2.83
469 470 5.758784 GGCTATGACCCACTATGTTTCTAAC 59.241 44.000 0.00 0.00 0.00 2.34
585 586 4.173256 GTTGTTGTGGGCTATTGTATTGC 58.827 43.478 0.00 0.00 0.00 3.56
595 596 1.859302 TTTCTTGGTTGTTGTGGGCT 58.141 45.000 0.00 0.00 0.00 5.19
603 604 3.181480 CCGTGTGGATTTTTCTTGGTTGT 60.181 43.478 0.00 0.00 37.49 3.32
604 605 3.380142 CCGTGTGGATTTTTCTTGGTTG 58.620 45.455 0.00 0.00 37.49 3.77
606 607 1.339929 GCCGTGTGGATTTTTCTTGGT 59.660 47.619 0.00 0.00 37.49 3.67
643 647 2.125832 TACTGGCTTGTACCGCGC 60.126 61.111 0.00 0.00 0.00 6.86
644 648 0.668096 TTGTACTGGCTTGTACCGCG 60.668 55.000 0.00 0.00 41.34 6.46
646 650 1.722011 CCTTGTACTGGCTTGTACCG 58.278 55.000 15.05 8.70 41.34 4.02
720 727 3.930848 GCTGGCTTGAAATTTGAAGGATG 59.069 43.478 17.46 0.00 0.00 3.51
760 767 1.826024 CGATGGTGAGGAGGAAGGG 59.174 63.158 0.00 0.00 0.00 3.95
775 789 2.281070 GCCGATGGTGATGGCGAT 60.281 61.111 0.00 0.00 39.30 4.58
811 825 2.736826 CGAGGAAGGAGGAAGGGGC 61.737 68.421 0.00 0.00 0.00 5.80
945 972 2.769095 GGTGTAGAGATGGAGAGCCTTT 59.231 50.000 0.00 0.00 34.31 3.11
957 984 0.913205 AGAGCTCGGAGGTGTAGAGA 59.087 55.000 15.38 0.00 34.13 3.10
964 991 1.380112 GGGTGTAGAGCTCGGAGGT 60.380 63.158 9.87 9.87 0.00 3.85
1182 1217 1.295746 GAGGTCCCGGAAGTTGTCC 59.704 63.158 0.73 0.00 43.90 4.02
1295 1339 2.231529 GCTTCTCCTCTACAGGCGATA 58.768 52.381 0.00 0.00 40.12 2.92
1296 1340 1.036707 GCTTCTCCTCTACAGGCGAT 58.963 55.000 0.00 0.00 40.12 4.58
1302 1346 1.949847 GCTGCGGCTTCTCCTCTACA 61.950 60.000 11.21 0.00 35.22 2.74
1623 1679 5.186797 ACAAGAGCAGCTCTGACTAACTAAT 59.813 40.000 26.09 2.74 40.28 1.73
1641 1697 9.090692 ACAAAAACATGAAAAAGATCACAAGAG 57.909 29.630 0.00 0.00 30.82 2.85
1746 1803 3.319122 GCAAGTTCTTCCAAGACCATTGT 59.681 43.478 8.21 0.00 34.13 2.71
1844 2068 0.402504 TGTAGGCACCCAAACCGATT 59.597 50.000 0.00 0.00 0.00 3.34
1907 2137 3.201290 GTTCTCCACATGGCACTATCAG 58.799 50.000 0.00 0.00 34.44 2.90
1948 2178 2.224354 ACCGGTACCGATGAAGTTTTGT 60.224 45.455 35.41 16.99 42.83 2.83
1956 2186 1.537814 AAGTGCACCGGTACCGATGA 61.538 55.000 33.18 14.51 42.83 2.92
2081 4068 1.318158 GGGGCTCCATCTTGTGCAAG 61.318 60.000 0.00 5.63 39.71 4.01
2336 4325 0.890542 AGCATCGTTTTCTGCCAGCA 60.891 50.000 0.00 0.00 39.22 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.