Multiple sequence alignment - TraesCS7B01G301400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G301400 chr7B 100.000 5706 0 0 1 5706 538227798 538222093 0.000000e+00 10538.0
1 TraesCS7B01G301400 chr7B 86.567 134 9 7 3009 3141 727599716 727599591 7.710000e-29 139.0
2 TraesCS7B01G301400 chr7A 92.780 3892 170 44 1433 5266 580669895 580666057 0.000000e+00 5528.0
3 TraesCS7B01G301400 chr7A 93.830 470 19 5 900 1361 580670400 580669933 0.000000e+00 699.0
4 TraesCS7B01G301400 chr7A 89.602 327 24 6 472 789 580674548 580674223 1.910000e-109 407.0
5 TraesCS7B01G301400 chr7A 94.382 89 4 1 3058 3145 701196458 701196546 9.970000e-28 135.0
6 TraesCS7B01G301400 chr7A 90.816 98 6 2 3058 3154 634927763 634927858 1.670000e-25 128.0
7 TraesCS7B01G301400 chr7A 88.710 62 2 1 852 908 580674073 580674012 2.850000e-08 71.3
8 TraesCS7B01G301400 chr7A 100.000 28 0 0 139 166 169949830 169949803 1.000000e-02 52.8
9 TraesCS7B01G301400 chr7D 95.110 3047 111 20 2295 5308 509927170 509924129 0.000000e+00 4767.0
10 TraesCS7B01G301400 chr7D 88.331 797 37 30 806 1577 509929885 509929120 0.000000e+00 905.0
11 TraesCS7B01G301400 chr7D 82.493 714 80 27 1597 2300 509929129 509928451 8.240000e-163 584.0
12 TraesCS7B01G301400 chr7D 85.533 394 26 14 5339 5706 509924017 509923629 3.230000e-102 383.0
13 TraesCS7B01G301400 chr7D 87.712 236 22 4 2628 2861 185911124 185910894 9.420000e-68 268.0
14 TraesCS7B01G301400 chr7D 91.837 98 5 2 3058 3154 549315117 549315212 3.590000e-27 134.0
15 TraesCS7B01G301400 chr7D 80.380 158 25 5 391 545 30850451 30850297 1.300000e-21 115.0
16 TraesCS7B01G301400 chr1B 85.911 291 30 6 2484 2769 608861014 608860730 3.340000e-77 300.0
17 TraesCS7B01G301400 chr1B 86.567 134 10 6 3009 3141 481723806 481723680 2.140000e-29 141.0
18 TraesCS7B01G301400 chr2A 84.775 289 33 6 2486 2769 755718907 755718625 4.350000e-71 279.0
19 TraesCS7B01G301400 chr2A 83.168 101 9 3 139 238 425819061 425818968 1.020000e-12 86.1
20 TraesCS7B01G301400 chr2A 90.164 61 5 1 439 498 533462052 533462112 1.700000e-10 78.7
21 TraesCS7B01G301400 chr3A 82.822 326 40 9 293 613 62258553 62258239 1.570000e-70 278.0
22 TraesCS7B01G301400 chr3A 84.429 289 34 6 2486 2769 514468967 514469249 2.030000e-69 274.0
23 TraesCS7B01G301400 chr1A 84.083 289 35 6 2486 2769 588988006 588987724 9.420000e-68 268.0
24 TraesCS7B01G301400 chr1A 83.475 236 32 2 2486 2718 510536823 510537054 4.480000e-51 213.0
25 TraesCS7B01G301400 chr5B 83.162 291 38 6 2484 2769 433291466 433291750 7.340000e-64 255.0
26 TraesCS7B01G301400 chr5B 75.342 365 56 28 139 494 339156365 339156026 1.660000e-30 145.0
27 TraesCS7B01G301400 chr5B 81.746 126 19 4 300 424 533577498 533577376 1.010000e-17 102.0
28 TraesCS7B01G301400 chr5B 94.118 51 3 0 3010 3060 615714230 615714180 1.700000e-10 78.7
29 TraesCS7B01G301400 chr1D 85.776 232 26 2 2486 2714 413723466 413723693 7.390000e-59 239.0
30 TraesCS7B01G301400 chr4B 84.667 150 23 0 1116 1265 507362798 507362947 3.560000e-32 150.0
31 TraesCS7B01G301400 chrUn 86.567 134 10 6 3009 3141 197238409 197238283 2.140000e-29 141.0
32 TraesCS7B01G301400 chr2D 94.253 87 4 1 3058 3143 593512574 593512488 1.290000e-26 132.0
33 TraesCS7B01G301400 chr2B 94.253 87 4 1 3058 3143 556196527 556196613 1.290000e-26 132.0
34 TraesCS7B01G301400 chr2B 89.831 59 5 1 3005 3062 25187091 25187149 2.200000e-09 75.0
35 TraesCS7B01G301400 chr6B 82.727 110 11 4 439 542 703292159 703292266 2.190000e-14 91.6
36 TraesCS7B01G301400 chr5D 86.957 69 9 0 2994 3062 216151422 216151490 1.700000e-10 78.7
37 TraesCS7B01G301400 chr5D 77.778 117 18 7 139 250 429032929 429032816 1.330000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G301400 chr7B 538222093 538227798 5705 True 10538.000 10538 100.00000 1 5706 1 chr7B.!!$R1 5705
1 TraesCS7B01G301400 chr7A 580666057 580674548 8491 True 1676.325 5528 91.23050 472 5266 4 chr7A.!!$R2 4794
2 TraesCS7B01G301400 chr7D 509923629 509929885 6256 True 1659.750 4767 87.86675 806 5706 4 chr7D.!!$R3 4900

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
896 1029 0.694771 AGCTTTGCATCCACCAGAGA 59.305 50.0 0.00 0.0 0.00 3.10 F
1285 5049 0.388520 GCCCGCACCACTTGATTTTC 60.389 55.0 0.00 0.0 0.00 2.29 F
1583 5376 0.390124 AGCCACACGACTTTTACGGA 59.610 50.0 0.00 0.0 34.93 4.69 F
2418 7562 0.100682 GCTCTTCTCACCGCGTATCA 59.899 55.0 4.92 0.0 0.00 2.15 F
3938 9114 0.861837 CTGAACTGTGTGAACTCCGC 59.138 55.0 0.00 0.0 0.00 5.54 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1785 5588 0.177141 CACGAACCATCCATACCGGT 59.823 55.0 13.98 13.98 35.57 5.28 R
2343 7487 0.465705 TGGGATCAATCAGCTCGGTC 59.534 55.0 0.00 0.00 0.00 4.79 R
3427 8602 0.443869 CGTCATTGCCAAAGACTCCG 59.556 55.0 10.67 0.00 0.00 4.63 R
4200 9380 2.094894 CGCAACTAGCTGGATCTTGTTG 59.905 50.0 3.17 11.67 45.71 3.33 R
5660 10968 0.035439 GCTGGTTCCGATTCCTTCCA 60.035 55.0 0.00 0.00 0.00 3.53 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 9.815936 GAACATGTTTTTGAAATCATGAATTCC 57.184 29.630 23.83 5.62 43.64 3.01
35 36 9.563748 AACATGTTTTTGAAATCATGAATTCCT 57.436 25.926 23.83 7.11 43.64 3.36
106 107 9.897744 TTGATTTTGTTTTGTTTAAAATGCACA 57.102 22.222 0.00 0.00 38.01 4.57
107 108 9.897744 TGATTTTGTTTTGTTTAAAATGCACAA 57.102 22.222 0.00 0.00 38.01 3.33
184 185 9.036671 TCAAAATTTAAAATCTTTTGACCGACC 57.963 29.630 17.92 0.00 41.47 4.79
185 186 9.040939 CAAAATTTAAAATCTTTTGACCGACCT 57.959 29.630 15.64 0.00 40.58 3.85
187 188 9.908152 AAATTTAAAATCTTTTGACCGACCTAG 57.092 29.630 0.00 0.00 0.00 3.02
188 189 8.857694 ATTTAAAATCTTTTGACCGACCTAGA 57.142 30.769 0.00 0.00 0.00 2.43
189 190 8.680039 TTTAAAATCTTTTGACCGACCTAGAA 57.320 30.769 0.00 0.00 0.00 2.10
190 191 8.680039 TTAAAATCTTTTGACCGACCTAGAAA 57.320 30.769 0.00 0.00 0.00 2.52
191 192 7.576861 AAAATCTTTTGACCGACCTAGAAAA 57.423 32.000 0.00 0.00 0.00 2.29
192 193 7.761038 AAATCTTTTGACCGACCTAGAAAAT 57.239 32.000 0.00 0.00 0.00 1.82
193 194 6.743575 ATCTTTTGACCGACCTAGAAAATG 57.256 37.500 0.00 0.00 0.00 2.32
194 195 5.617252 TCTTTTGACCGACCTAGAAAATGT 58.383 37.500 0.00 0.00 0.00 2.71
195 196 6.059484 TCTTTTGACCGACCTAGAAAATGTT 58.941 36.000 0.00 0.00 0.00 2.71
196 197 7.218614 TCTTTTGACCGACCTAGAAAATGTTA 58.781 34.615 0.00 0.00 0.00 2.41
197 198 7.716123 TCTTTTGACCGACCTAGAAAATGTTAA 59.284 33.333 0.00 0.00 0.00 2.01
198 199 7.989416 TTTGACCGACCTAGAAAATGTTAAT 57.011 32.000 0.00 0.00 0.00 1.40
199 200 7.989416 TTGACCGACCTAGAAAATGTTAATT 57.011 32.000 0.00 0.00 0.00 1.40
200 201 7.989416 TGACCGACCTAGAAAATGTTAATTT 57.011 32.000 0.00 0.00 37.61 1.82
201 202 9.504708 TTGACCGACCTAGAAAATGTTAATTTA 57.495 29.630 0.00 0.00 34.84 1.40
202 203 9.504708 TGACCGACCTAGAAAATGTTAATTTAA 57.495 29.630 0.00 0.00 34.84 1.52
279 280 9.859427 TTCATTGATTTCAGTATTTGTTCATCC 57.141 29.630 0.00 0.00 0.00 3.51
280 281 9.022884 TCATTGATTTCAGTATTTGTTCATCCA 57.977 29.630 0.00 0.00 0.00 3.41
281 282 9.811995 CATTGATTTCAGTATTTGTTCATCCAT 57.188 29.630 0.00 0.00 0.00 3.41
287 288 9.829507 TTTCAGTATTTGTTCATCCATTTTGTT 57.170 25.926 0.00 0.00 0.00 2.83
288 289 9.829507 TTCAGTATTTGTTCATCCATTTTGTTT 57.170 25.926 0.00 0.00 0.00 2.83
289 290 9.829507 TCAGTATTTGTTCATCCATTTTGTTTT 57.170 25.926 0.00 0.00 0.00 2.43
403 404 8.586570 AAAATGCTCGTAAAAATTGTTCATCA 57.413 26.923 0.00 0.00 0.00 3.07
404 405 8.586570 AAATGCTCGTAAAAATTGTTCATCAA 57.413 26.923 0.00 0.00 40.53 2.57
405 406 8.586570 AATGCTCGTAAAAATTGTTCATCAAA 57.413 26.923 0.00 0.00 39.62 2.69
406 407 7.993821 TGCTCGTAAAAATTGTTCATCAAAA 57.006 28.000 0.00 0.00 39.62 2.44
407 408 8.586570 TGCTCGTAAAAATTGTTCATCAAAAT 57.413 26.923 0.00 0.00 39.62 1.82
408 409 9.684448 TGCTCGTAAAAATTGTTCATCAAAATA 57.316 25.926 0.00 0.00 39.62 1.40
502 503 8.867935 TGTTTTATTGACAGTTCACAATGTTTG 58.132 29.630 0.00 0.00 37.32 2.93
509 510 4.571580 ACAGTTCACAATGTTTGGCAATTG 59.428 37.500 0.00 5.59 34.12 2.32
513 514 5.528043 TCACAATGTTTGGCAATTGTAGT 57.472 34.783 15.17 3.87 35.71 2.73
514 515 5.288015 TCACAATGTTTGGCAATTGTAGTG 58.712 37.500 15.17 14.09 35.71 2.74
523 524 2.102578 GCAATTGTAGTGCCAATCCCT 58.897 47.619 7.40 0.00 34.01 4.20
534 535 9.702253 TGTAGTGCCAATCCCTAATTATTTTAA 57.298 29.630 0.00 0.00 0.00 1.52
600 606 3.306917 AAAAGAAATAAAACGGGGGCG 57.693 42.857 0.00 0.00 0.00 6.13
655 661 1.227556 GTGCGCCCCTGATTACGAT 60.228 57.895 4.18 0.00 0.00 3.73
671 677 3.788434 ACGATGCACTTAAGTCGTTTG 57.212 42.857 12.72 4.65 43.97 2.93
682 691 3.690475 AAGTCGTTTGGTACCCCTAAG 57.310 47.619 10.07 0.00 0.00 2.18
695 704 7.226441 TGGTACCCCTAAGAAAAACTTAAGTC 58.774 38.462 8.95 0.00 40.07 3.01
717 727 4.936411 TCGTTTCGTCCCTTTATTTATGCA 59.064 37.500 0.00 0.00 0.00 3.96
724 734 5.124776 CGTCCCTTTATTTATGCAGTTTGGA 59.875 40.000 0.00 0.00 0.00 3.53
726 736 5.420739 TCCCTTTATTTATGCAGTTTGGACC 59.579 40.000 0.00 0.00 0.00 4.46
789 799 1.871039 CCACGAACAAACCCACAGTAG 59.129 52.381 0.00 0.00 0.00 2.57
790 800 2.557317 CACGAACAAACCCACAGTAGT 58.443 47.619 0.00 0.00 0.00 2.73
791 801 2.940410 CACGAACAAACCCACAGTAGTT 59.060 45.455 0.00 0.00 31.60 2.24
792 802 2.940410 ACGAACAAACCCACAGTAGTTG 59.060 45.455 0.00 0.00 29.74 3.16
793 803 2.286772 CGAACAAACCCACAGTAGTTGC 60.287 50.000 0.00 0.00 29.74 4.17
794 804 2.729028 ACAAACCCACAGTAGTTGCT 57.271 45.000 0.00 0.00 0.00 3.91
795 805 2.572290 ACAAACCCACAGTAGTTGCTC 58.428 47.619 0.00 0.00 0.00 4.26
796 806 2.092646 ACAAACCCACAGTAGTTGCTCA 60.093 45.455 0.00 0.00 0.00 4.26
797 807 2.948979 CAAACCCACAGTAGTTGCTCAA 59.051 45.455 0.00 0.00 0.00 3.02
798 808 3.290948 AACCCACAGTAGTTGCTCAAA 57.709 42.857 0.00 0.00 0.00 2.69
799 809 3.290948 ACCCACAGTAGTTGCTCAAAA 57.709 42.857 0.00 0.00 0.00 2.44
800 810 3.626930 ACCCACAGTAGTTGCTCAAAAA 58.373 40.909 0.00 0.00 0.00 1.94
881 1014 3.097728 CGTCGAACGCGTCAGCTT 61.098 61.111 14.44 0.00 42.32 3.74
889 1022 2.679934 CGCGTCAGCTTTGCATCCA 61.680 57.895 0.00 0.00 42.32 3.41
895 1028 0.809385 CAGCTTTGCATCCACCAGAG 59.191 55.000 0.00 0.00 0.00 3.35
896 1029 0.694771 AGCTTTGCATCCACCAGAGA 59.305 50.000 0.00 0.00 0.00 3.10
906 4664 7.500629 TGCATCCACCAGAGAATATATATGT 57.499 36.000 0.00 0.00 0.00 2.29
1222 4985 2.429930 CCACCGAGAACAAGGCCA 59.570 61.111 5.01 0.00 0.00 5.36
1285 5049 0.388520 GCCCGCACCACTTGATTTTC 60.389 55.000 0.00 0.00 0.00 2.29
1290 5054 3.485216 CCGCACCACTTGATTTTCGATAC 60.485 47.826 0.00 0.00 0.00 2.24
1355 5120 2.862541 TGATGCTGTAGTTTGGCTTGT 58.137 42.857 0.00 0.00 0.00 3.16
1361 5126 1.953686 TGTAGTTTGGCTTGTCTTGGC 59.046 47.619 0.00 0.00 0.00 4.52
1363 5128 1.780503 AGTTTGGCTTGTCTTGGCTT 58.219 45.000 0.00 0.00 0.00 4.35
1368 5151 0.538287 GGCTTGTCTTGGCTTGGAGT 60.538 55.000 0.00 0.00 0.00 3.85
1387 5170 0.948678 TGTTTGGCTAACCGTTGCTC 59.051 50.000 9.26 0.00 39.70 4.26
1418 5201 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1419 5202 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1420 5203 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1421 5204 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1422 5205 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1423 5206 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1424 5207 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1425 5208 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1426 5209 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1427 5210 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1428 5211 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1429 5212 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1430 5213 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1431 5214 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1432 5215 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1433 5216 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1434 5217 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1435 5218 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1436 5219 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
1437 5220 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
1438 5221 0.454285 GTGTGTGTGTGTGTGTGTGC 60.454 55.000 0.00 0.00 0.00 4.57
1439 5222 1.225991 GTGTGTGTGTGTGTGTGCG 60.226 57.895 0.00 0.00 0.00 5.34
1440 5223 1.669437 TGTGTGTGTGTGTGTGCGT 60.669 52.632 0.00 0.00 0.00 5.24
1441 5224 1.225991 GTGTGTGTGTGTGTGCGTG 60.226 57.895 0.00 0.00 0.00 5.34
1442 5225 1.669437 TGTGTGTGTGTGTGCGTGT 60.669 52.632 0.00 0.00 0.00 4.49
1443 5226 1.225991 GTGTGTGTGTGTGCGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
1444 5227 1.669437 TGTGTGTGTGTGCGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
1445 5228 1.225991 GTGTGTGTGTGCGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
1446 5229 1.669437 TGTGTGTGTGCGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
1447 5230 1.225991 GTGTGTGTGCGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
1448 5231 1.669437 TGTGTGTGCGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
1449 5232 1.225991 GTGTGTGCGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
1450 5233 1.669437 TGTGTGCGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
1451 5234 1.225991 GTGTGCGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
1452 5235 1.669437 TGTGCGTGTGTGTGTGTGT 60.669 52.632 0.00 0.00 0.00 3.72
1453 5236 1.225991 GTGCGTGTGTGTGTGTGTG 60.226 57.895 0.00 0.00 0.00 3.82
1454 5237 1.374758 TGCGTGTGTGTGTGTGTGA 60.375 52.632 0.00 0.00 0.00 3.58
1455 5238 1.060308 GCGTGTGTGTGTGTGTGAC 59.940 57.895 0.00 0.00 0.00 3.67
1493 5276 2.420722 GAGGAAGAAGACGACGACTCAT 59.579 50.000 0.00 0.00 0.00 2.90
1577 5370 2.159014 TCAGTTACAGCCACACGACTTT 60.159 45.455 0.00 0.00 0.00 2.66
1578 5371 2.612212 CAGTTACAGCCACACGACTTTT 59.388 45.455 0.00 0.00 0.00 2.27
1579 5372 3.805422 CAGTTACAGCCACACGACTTTTA 59.195 43.478 0.00 0.00 0.00 1.52
1581 5374 1.214367 ACAGCCACACGACTTTTACG 58.786 50.000 0.00 0.00 0.00 3.18
1582 5375 0.511221 CAGCCACACGACTTTTACGG 59.489 55.000 0.00 0.00 34.93 4.02
1583 5376 0.390124 AGCCACACGACTTTTACGGA 59.610 50.000 0.00 0.00 34.93 4.69
1585 5378 1.142474 CCACACGACTTTTACGGACC 58.858 55.000 0.00 0.00 34.93 4.46
1586 5379 1.538634 CCACACGACTTTTACGGACCA 60.539 52.381 0.00 0.00 34.93 4.02
1587 5380 1.523934 CACACGACTTTTACGGACCAC 59.476 52.381 0.00 0.00 34.93 4.16
1588 5381 1.410153 ACACGACTTTTACGGACCACT 59.590 47.619 0.00 0.00 34.93 4.00
1589 5382 2.056577 CACGACTTTTACGGACCACTC 58.943 52.381 0.00 0.00 34.93 3.51
1590 5383 1.682854 ACGACTTTTACGGACCACTCA 59.317 47.619 0.00 0.00 34.93 3.41
1591 5384 2.288030 ACGACTTTTACGGACCACTCAG 60.288 50.000 0.00 0.00 34.93 3.35
1605 5398 1.328680 CACTCAGCACACACACAACTC 59.671 52.381 0.00 0.00 0.00 3.01
1618 5415 0.908910 ACAACTCACTCACACCACCA 59.091 50.000 0.00 0.00 0.00 4.17
1623 5420 4.626081 ACTCACACCACCAGGCGC 62.626 66.667 0.00 0.00 39.06 6.53
1640 5437 3.111939 CCGTCGCCGATCTTCTCT 58.888 61.111 0.00 0.00 35.63 3.10
1642 5439 1.440938 CCGTCGCCGATCTTCTCTCT 61.441 60.000 0.00 0.00 35.63 3.10
1760 5563 7.092079 TGATATTTGTGCAAATTGAGGTTGAG 58.908 34.615 14.29 0.00 40.99 3.02
1761 5564 3.731652 TTGTGCAAATTGAGGTTGAGG 57.268 42.857 0.00 0.00 0.00 3.86
1770 5573 5.692115 AATTGAGGTTGAGGTTTTGGTTT 57.308 34.783 0.00 0.00 0.00 3.27
1779 5582 7.231925 AGGTTGAGGTTTTGGTTTATTCGTATT 59.768 33.333 0.00 0.00 0.00 1.89
1780 5583 7.327518 GGTTGAGGTTTTGGTTTATTCGTATTG 59.672 37.037 0.00 0.00 0.00 1.90
1785 5588 6.151480 GGTTTTGGTTTATTCGTATTGGAGGA 59.849 38.462 0.00 0.00 0.00 3.71
1786 5589 6.746745 TTTGGTTTATTCGTATTGGAGGAC 57.253 37.500 0.00 0.00 0.00 3.85
1798 5601 0.762842 TGGAGGACCGGTATGGATGG 60.763 60.000 7.34 0.00 42.00 3.51
1829 5632 5.304778 TGCACTATCAAGTTTGCAAGTAGA 58.695 37.500 0.00 0.00 33.17 2.59
1878 5681 2.429971 TGCACTCAACCAAATTGCTTCA 59.570 40.909 0.00 0.00 38.29 3.02
1879 5682 3.069872 TGCACTCAACCAAATTGCTTCAT 59.930 39.130 0.00 0.00 38.29 2.57
1880 5683 3.676646 GCACTCAACCAAATTGCTTCATC 59.323 43.478 0.00 0.00 38.29 2.92
1881 5684 4.796946 GCACTCAACCAAATTGCTTCATCA 60.797 41.667 0.00 0.00 38.29 3.07
1886 5689 4.730949 ACCAAATTGCTTCATCATCAGG 57.269 40.909 0.00 0.00 0.00 3.86
1899 5702 4.352001 TCATCATCAGGGAATAAAGAGGGG 59.648 45.833 0.00 0.00 0.00 4.79
1903 5706 3.815507 TCAGGGAATAAAGAGGGGAACT 58.184 45.455 0.00 0.00 0.00 3.01
1940 5744 4.970662 TGCATAGCTTCTGAAAATCCAC 57.029 40.909 0.00 0.00 0.00 4.02
2018 5822 2.086054 ACATCAGCTTCGACCACTTC 57.914 50.000 0.00 0.00 0.00 3.01
2051 5855 1.227205 CCCGCAGCAGACAGAGATC 60.227 63.158 0.00 0.00 0.00 2.75
2072 5876 3.191162 TCTGCCAATCGATTTTCCACAAG 59.809 43.478 8.21 0.24 0.00 3.16
2140 5998 5.303747 TGCCGGTTATCTGTTTTATGTTG 57.696 39.130 1.90 0.00 0.00 3.33
2152 6010 6.545666 TCTGTTTTATGTTGTCACAGGTTCAT 59.454 34.615 0.00 0.00 35.94 2.57
2154 6012 7.199766 TGTTTTATGTTGTCACAGGTTCATTC 58.800 34.615 0.00 0.00 35.94 2.67
2156 6014 2.582052 TGTTGTCACAGGTTCATTCCC 58.418 47.619 0.00 0.00 0.00 3.97
2157 6015 2.174639 TGTTGTCACAGGTTCATTCCCT 59.825 45.455 0.00 0.00 0.00 4.20
2161 6019 4.722193 CAGGTTCATTCCCTGCGT 57.278 55.556 0.00 0.00 42.81 5.24
2162 6020 2.946947 CAGGTTCATTCCCTGCGTT 58.053 52.632 0.00 0.00 42.81 4.84
2163 6021 1.247567 CAGGTTCATTCCCTGCGTTT 58.752 50.000 0.00 0.00 42.81 3.60
2164 6022 1.613437 CAGGTTCATTCCCTGCGTTTT 59.387 47.619 0.00 0.00 42.81 2.43
2165 6023 1.886542 AGGTTCATTCCCTGCGTTTTC 59.113 47.619 0.00 0.00 0.00 2.29
2166 6024 1.886542 GGTTCATTCCCTGCGTTTTCT 59.113 47.619 0.00 0.00 0.00 2.52
2167 6025 2.296190 GGTTCATTCCCTGCGTTTTCTT 59.704 45.455 0.00 0.00 0.00 2.52
2168 6026 3.243737 GGTTCATTCCCTGCGTTTTCTTT 60.244 43.478 0.00 0.00 0.00 2.52
2169 6027 4.368315 GTTCATTCCCTGCGTTTTCTTTT 58.632 39.130 0.00 0.00 0.00 2.27
2170 6028 4.237349 TCATTCCCTGCGTTTTCTTTTC 57.763 40.909 0.00 0.00 0.00 2.29
2171 6029 3.005367 TCATTCCCTGCGTTTTCTTTTCC 59.995 43.478 0.00 0.00 0.00 3.13
2172 6030 2.358322 TCCCTGCGTTTTCTTTTCCT 57.642 45.000 0.00 0.00 0.00 3.36
2173 6031 2.227194 TCCCTGCGTTTTCTTTTCCTC 58.773 47.619 0.00 0.00 0.00 3.71
2174 6032 1.953686 CCCTGCGTTTTCTTTTCCTCA 59.046 47.619 0.00 0.00 0.00 3.86
2175 6033 2.287608 CCCTGCGTTTTCTTTTCCTCAC 60.288 50.000 0.00 0.00 0.00 3.51
2176 6034 2.357637 CCTGCGTTTTCTTTTCCTCACA 59.642 45.455 0.00 0.00 0.00 3.58
2177 6035 3.363178 CTGCGTTTTCTTTTCCTCACAC 58.637 45.455 0.00 0.00 0.00 3.82
2178 6036 3.013921 TGCGTTTTCTTTTCCTCACACT 58.986 40.909 0.00 0.00 0.00 3.55
2179 6037 4.193090 TGCGTTTTCTTTTCCTCACACTA 58.807 39.130 0.00 0.00 0.00 2.74
2180 6038 4.272504 TGCGTTTTCTTTTCCTCACACTAG 59.727 41.667 0.00 0.00 0.00 2.57
2181 6039 4.510340 GCGTTTTCTTTTCCTCACACTAGA 59.490 41.667 0.00 0.00 0.00 2.43
2182 6040 5.558463 GCGTTTTCTTTTCCTCACACTAGAC 60.558 44.000 0.00 0.00 0.00 2.59
2183 6041 5.522460 CGTTTTCTTTTCCTCACACTAGACA 59.478 40.000 0.00 0.00 0.00 3.41
2184 6042 6.202954 CGTTTTCTTTTCCTCACACTAGACAT 59.797 38.462 0.00 0.00 0.00 3.06
2185 6043 7.384115 CGTTTTCTTTTCCTCACACTAGACATA 59.616 37.037 0.00 0.00 0.00 2.29
2186 6044 8.713271 GTTTTCTTTTCCTCACACTAGACATAG 58.287 37.037 0.00 0.00 34.96 2.23
2187 6045 5.967088 TCTTTTCCTCACACTAGACATAGC 58.033 41.667 0.00 0.00 31.66 2.97
2188 6046 4.737855 TTTCCTCACACTAGACATAGCC 57.262 45.455 0.00 0.00 31.66 3.93
2189 6047 3.671740 TCCTCACACTAGACATAGCCT 57.328 47.619 0.00 0.00 31.66 4.58
2190 6048 4.790718 TCCTCACACTAGACATAGCCTA 57.209 45.455 0.00 0.00 31.66 3.93
2191 6049 5.125367 TCCTCACACTAGACATAGCCTAA 57.875 43.478 0.00 0.00 31.66 2.69
2192 6050 5.516044 TCCTCACACTAGACATAGCCTAAA 58.484 41.667 0.00 0.00 31.66 1.85
2196 6054 8.589338 CCTCACACTAGACATAGCCTAAATTAT 58.411 37.037 0.00 0.00 31.66 1.28
2203 6061 9.646427 CTAGACATAGCCTAAATTATTCTGTCC 57.354 37.037 0.00 0.00 32.85 4.02
2212 6070 9.289782 GCCTAAATTATTCTGTCCATCTATTGT 57.710 33.333 0.00 0.00 0.00 2.71
2238 6096 1.825090 ACTGCGAATCATGCCAAAGA 58.175 45.000 0.00 0.00 0.00 2.52
2343 7487 2.176273 CGGGAGGCTGCTGAATTCG 61.176 63.158 9.55 0.00 0.00 3.34
2387 7531 0.252650 AAGGCAGGAGGAGCTTCTCT 60.253 55.000 21.58 5.12 34.39 3.10
2411 7555 3.526931 TCTATTTGGCTCTTCTCACCG 57.473 47.619 0.00 0.00 0.00 4.94
2413 7557 1.021390 ATTTGGCTCTTCTCACCGCG 61.021 55.000 0.00 0.00 0.00 6.46
2416 7560 1.320344 TGGCTCTTCTCACCGCGTAT 61.320 55.000 4.92 0.00 0.00 3.06
2418 7562 0.100682 GCTCTTCTCACCGCGTATCA 59.899 55.000 4.92 0.00 0.00 2.15
2438 7582 5.885230 TCAATCTTCCATGTGCTTAACTG 57.115 39.130 0.00 0.00 0.00 3.16
2446 7590 5.321102 TCCATGTGCTTAACTGTTACCATT 58.679 37.500 0.00 0.00 0.00 3.16
2513 7657 1.494721 TGTTCTTGGAGCTTCCCTTGT 59.505 47.619 0.00 0.00 35.03 3.16
2516 7660 1.202927 TCTTGGAGCTTCCCTTGTTGG 60.203 52.381 0.00 0.00 35.03 3.77
2524 7668 2.489073 GCTTCCCTTGTTGGAGGAGAAA 60.489 50.000 0.00 0.00 39.25 2.52
2639 7783 1.452651 CGCTGCATCACCAGGGATT 60.453 57.895 0.00 0.00 45.51 3.01
2704 7848 2.029623 GTTTGCCATCCATCTGAGCAT 58.970 47.619 0.00 0.00 32.67 3.79
2945 8091 3.321682 TGAGATTCTTTTGCCAACTTGGG 59.678 43.478 9.95 0.00 38.19 4.12
3039 8185 9.433153 CCTCCGTTCCTAAATATAATACCTTTC 57.567 37.037 0.00 0.00 0.00 2.62
3040 8186 9.991906 CTCCGTTCCTAAATATAATACCTTTCA 57.008 33.333 0.00 0.00 0.00 2.69
3132 8305 9.106070 TCTCTAAAAGGGCTTATATTTCGAAAC 57.894 33.333 13.81 0.00 0.00 2.78
3427 8602 4.254492 AGTTCTCGAAAACTAAGGGCATC 58.746 43.478 1.32 0.00 37.71 3.91
3518 8693 4.635699 AATCGTCCTGAGGTTAGGTTTT 57.364 40.909 0.00 0.00 38.99 2.43
3762 8937 3.826524 TCTTTGTTGGTGGTGCTGATAA 58.173 40.909 0.00 0.00 0.00 1.75
3889 9065 8.673711 TGTTGGTAATTTGATTCAGCAGTATAC 58.326 33.333 0.00 0.00 0.00 1.47
3938 9114 0.861837 CTGAACTGTGTGAACTCCGC 59.138 55.000 0.00 0.00 0.00 5.54
4001 9177 8.334263 TCTGAAGCATTTATGTGACATAAACA 57.666 30.769 27.34 19.88 0.00 2.83
4038 9214 5.394773 GGTCAAACTAAAACAAGGGCTGAAA 60.395 40.000 0.00 0.00 0.00 2.69
4098 9278 5.180304 CCTTCAAGTAAGCTCTTGTTCCTTC 59.820 44.000 13.25 0.00 43.44 3.46
4099 9279 4.642429 TCAAGTAAGCTCTTGTTCCTTCC 58.358 43.478 13.25 0.00 43.44 3.46
4100 9280 4.348168 TCAAGTAAGCTCTTGTTCCTTCCT 59.652 41.667 13.25 0.00 43.44 3.36
4101 9281 4.984146 AGTAAGCTCTTGTTCCTTCCTT 57.016 40.909 0.00 0.00 0.00 3.36
4200 9380 6.332735 AGAGTCAATTTTGGAAGCTTTACC 57.667 37.500 0.00 0.00 0.00 2.85
4428 9608 6.599244 TCTGTCCGAATGAGCATATTTCTTTT 59.401 34.615 0.00 0.00 0.00 2.27
4497 9677 5.044919 TCTCATACCATCAAACCACAGGATT 60.045 40.000 0.00 0.00 0.00 3.01
4626 9806 1.069090 CGCCTGCCGTACACCATAT 59.931 57.895 0.00 0.00 0.00 1.78
4647 9827 3.708403 ACAGAAAGATGATGCAGTGGA 57.292 42.857 0.00 0.00 0.00 4.02
4679 9859 1.985473 AACATTTGCAGGCAGTCAGA 58.015 45.000 0.00 0.00 0.00 3.27
4746 9926 2.608016 GCCTAACTGGAAGCTGCAAAAC 60.608 50.000 1.02 0.00 37.60 2.43
4922 10103 3.633986 GGAGTTGGAGATGCCTAAATTGG 59.366 47.826 0.00 0.00 37.63 3.16
4925 10106 2.378038 TGGAGATGCCTAAATTGGTGC 58.622 47.619 0.00 0.00 37.63 5.01
4963 10144 4.399303 CCTGGGGAGCTACATTTTTAGTTG 59.601 45.833 0.00 0.00 0.00 3.16
4965 10146 4.764823 TGGGGAGCTACATTTTTAGTTGTG 59.235 41.667 0.00 0.00 0.00 3.33
5046 10227 5.586643 GGAGAGAAAAGAATCAGCCGTTTAT 59.413 40.000 0.00 0.00 0.00 1.40
5049 10230 6.431234 AGAGAAAAGAATCAGCCGTTTATTGT 59.569 34.615 0.00 0.00 0.00 2.71
5103 10284 3.782046 CTTGGGTCGACTGTATTGGTAG 58.218 50.000 16.46 0.00 0.00 3.18
5147 10328 5.448654 AGCCTGGTATTGATTTGCAGATTA 58.551 37.500 0.00 0.00 0.00 1.75
5154 10336 8.354426 TGGTATTGATTTGCAGATTATGATGTG 58.646 33.333 0.00 0.00 0.00 3.21
5165 10347 4.763793 AGATTATGATGTGCCATAGGTTGC 59.236 41.667 0.00 0.00 31.42 4.17
5218 10400 3.308401 GGGCCATCAAAGGTGGATAAAT 58.692 45.455 4.39 0.00 39.12 1.40
5311 10512 2.843669 GGCATTGCCCATTTGTGTG 58.156 52.632 17.28 0.00 44.06 3.82
5313 10514 1.673626 GGCATTGCCCATTTGTGTGAG 60.674 52.381 17.28 0.00 44.06 3.51
5315 10516 1.894466 CATTGCCCATTTGTGTGAGGA 59.106 47.619 0.00 0.00 0.00 3.71
5316 10517 1.619654 TTGCCCATTTGTGTGAGGAG 58.380 50.000 0.00 0.00 0.00 3.69
5317 10518 0.895100 TGCCCATTTGTGTGAGGAGC 60.895 55.000 0.00 0.00 0.00 4.70
5318 10519 0.610232 GCCCATTTGTGTGAGGAGCT 60.610 55.000 0.00 0.00 0.00 4.09
5319 10520 1.340017 GCCCATTTGTGTGAGGAGCTA 60.340 52.381 0.00 0.00 0.00 3.32
5363 10645 8.393671 ACCAATTTTGCATGAAACAATATTGT 57.606 26.923 15.47 15.47 41.18 2.71
5372 10654 9.571816 TGCATGAAACAATATTGTATCAGGATA 57.428 29.630 21.07 3.18 41.31 2.59
5413 10699 2.102252 GACATCTCAGATCCACCCACTC 59.898 54.545 0.00 0.00 0.00 3.51
5428 10714 4.397103 CACCCACTCGAGTACAATAGTGTA 59.603 45.833 19.57 0.00 39.30 2.90
5437 10723 4.287552 AGTACAATAGTGTAGTGGGGGAG 58.712 47.826 9.77 0.00 41.46 4.30
5442 10728 2.609610 TGTAGTGGGGGAGGTGGC 60.610 66.667 0.00 0.00 0.00 5.01
5484 10792 8.041323 ACCTTGTCTAACATATACAGACCTTTG 58.959 37.037 7.64 0.00 38.32 2.77
5498 10806 7.672983 ACAGACCTTTGAATAATATATGGCG 57.327 36.000 0.00 0.00 0.00 5.69
5507 10815 7.980742 TGAATAATATATGGCGTACTTAGCG 57.019 36.000 0.00 0.00 35.00 4.26
5512 10820 6.748333 ATATATGGCGTACTTAGCGAGTTA 57.252 37.500 1.11 0.00 39.86 2.24
5606 10914 7.492994 GGACTCTTGTTCCTTATTCTATCACAC 59.507 40.741 0.00 0.00 0.00 3.82
5607 10915 7.907389 ACTCTTGTTCCTTATTCTATCACACA 58.093 34.615 0.00 0.00 0.00 3.72
5658 10966 4.704540 TGAAGCTTGGTTCAGTCAAGAAAA 59.295 37.500 2.10 0.00 42.94 2.29
5659 10967 5.184864 TGAAGCTTGGTTCAGTCAAGAAAAA 59.815 36.000 2.10 0.00 42.94 1.94
5660 10968 5.859205 AGCTTGGTTCAGTCAAGAAAAAT 57.141 34.783 7.86 0.00 42.94 1.82
5683 10991 0.673644 AGGAATCGGAACCAGCAACG 60.674 55.000 7.21 0.00 0.00 4.10
5693 11001 1.029408 ACCAGCAACGTTGAGCAACA 61.029 50.000 31.62 0.00 41.20 3.33
5696 11004 1.597195 CAGCAACGTTGAGCAACACTA 59.403 47.619 31.62 0.00 41.20 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 9.815936 GGAATTCATGATTTCAAAAACATGTTC 57.184 29.630 24.38 16.41 44.58 3.18
9 10 9.563748 AGGAATTCATGATTTCAAAAACATGTT 57.436 25.926 24.38 4.92 44.58 2.71
80 81 9.897744 TGTGCATTTTAAACAAAACAAAATCAA 57.102 22.222 0.00 0.00 31.27 2.57
81 82 9.897744 TTGTGCATTTTAAACAAAACAAAATCA 57.102 22.222 0.00 0.00 31.27 2.57
158 159 9.036671 GGTCGGTCAAAAGATTTTAAATTTTGA 57.963 29.630 17.92 17.92 45.66 2.69
159 160 9.040939 AGGTCGGTCAAAAGATTTTAAATTTTG 57.959 29.630 14.96 14.96 42.52 2.44
161 162 9.908152 CTAGGTCGGTCAAAAGATTTTAAATTT 57.092 29.630 0.00 0.00 0.00 1.82
162 163 9.292195 TCTAGGTCGGTCAAAAGATTTTAAATT 57.708 29.630 0.00 0.00 0.00 1.82
163 164 8.857694 TCTAGGTCGGTCAAAAGATTTTAAAT 57.142 30.769 0.00 0.00 0.00 1.40
164 165 8.680039 TTCTAGGTCGGTCAAAAGATTTTAAA 57.320 30.769 0.00 0.00 0.00 1.52
165 166 8.680039 TTTCTAGGTCGGTCAAAAGATTTTAA 57.320 30.769 0.00 0.00 0.00 1.52
166 167 8.680039 TTTTCTAGGTCGGTCAAAAGATTTTA 57.320 30.769 0.00 0.00 0.00 1.52
167 168 7.576861 TTTTCTAGGTCGGTCAAAAGATTTT 57.423 32.000 0.00 0.00 0.00 1.82
168 169 7.230712 ACATTTTCTAGGTCGGTCAAAAGATTT 59.769 33.333 0.00 0.00 0.00 2.17
169 170 6.715264 ACATTTTCTAGGTCGGTCAAAAGATT 59.285 34.615 0.00 0.00 0.00 2.40
170 171 6.238648 ACATTTTCTAGGTCGGTCAAAAGAT 58.761 36.000 0.00 0.00 0.00 2.40
171 172 5.617252 ACATTTTCTAGGTCGGTCAAAAGA 58.383 37.500 0.00 0.00 0.00 2.52
172 173 5.941948 ACATTTTCTAGGTCGGTCAAAAG 57.058 39.130 0.00 0.00 0.00 2.27
173 174 7.804843 TTAACATTTTCTAGGTCGGTCAAAA 57.195 32.000 0.00 0.00 0.00 2.44
174 175 7.989416 ATTAACATTTTCTAGGTCGGTCAAA 57.011 32.000 0.00 0.00 0.00 2.69
175 176 7.989416 AATTAACATTTTCTAGGTCGGTCAA 57.011 32.000 0.00 0.00 0.00 3.18
176 177 7.989416 AAATTAACATTTTCTAGGTCGGTCA 57.011 32.000 0.00 0.00 0.00 4.02
253 254 9.859427 GGATGAACAAATACTGAAATCAATGAA 57.141 29.630 0.00 0.00 0.00 2.57
254 255 9.022884 TGGATGAACAAATACTGAAATCAATGA 57.977 29.630 0.00 0.00 0.00 2.57
255 256 9.811995 ATGGATGAACAAATACTGAAATCAATG 57.188 29.630 0.00 0.00 0.00 2.82
261 262 9.829507 AACAAAATGGATGAACAAATACTGAAA 57.170 25.926 0.00 0.00 0.00 2.69
262 263 9.829507 AAACAAAATGGATGAACAAATACTGAA 57.170 25.926 0.00 0.00 0.00 3.02
263 264 9.829507 AAAACAAAATGGATGAACAAATACTGA 57.170 25.926 0.00 0.00 0.00 3.41
377 378 9.039870 TGATGAACAATTTTTACGAGCATTTTT 57.960 25.926 0.00 0.00 0.00 1.94
378 379 8.586570 TGATGAACAATTTTTACGAGCATTTT 57.413 26.923 0.00 0.00 0.00 1.82
379 380 8.586570 TTGATGAACAATTTTTACGAGCATTT 57.413 26.923 0.00 0.00 33.18 2.32
380 381 8.586570 TTTGATGAACAATTTTTACGAGCATT 57.413 26.923 0.00 0.00 38.36 3.56
381 382 8.586570 TTTTGATGAACAATTTTTACGAGCAT 57.413 26.923 0.00 0.00 38.36 3.79
382 383 7.993821 TTTTGATGAACAATTTTTACGAGCA 57.006 28.000 0.00 0.00 38.36 4.26
483 484 3.194329 TGCCAAACATTGTGAACTGTCAA 59.806 39.130 0.00 0.00 34.87 3.18
489 490 5.752955 ACTACAATTGCCAAACATTGTGAAC 59.247 36.000 5.05 0.00 37.72 3.18
578 584 3.430556 CGCCCCCGTTTTATTTCTTTTTG 59.569 43.478 0.00 0.00 0.00 2.44
638 644 1.227527 CATCGTAATCAGGGGCGCA 60.228 57.895 10.83 0.00 0.00 6.09
655 661 3.132925 GGTACCAAACGACTTAAGTGCA 58.867 45.455 14.14 0.00 0.00 4.57
671 677 6.369890 CGACTTAAGTTTTTCTTAGGGGTACC 59.630 42.308 10.02 2.17 42.24 3.34
682 691 5.007039 AGGGACGAAACGACTTAAGTTTTTC 59.993 40.000 22.25 22.25 41.32 2.29
695 704 5.163794 ACTGCATAAATAAAGGGACGAAACG 60.164 40.000 0.00 0.00 0.00 3.60
717 727 0.396811 CCGTGAAGGAGGTCCAAACT 59.603 55.000 0.00 0.00 45.00 2.66
802 812 3.945981 ACTGTGGGTTTGTTCGTTTTT 57.054 38.095 0.00 0.00 0.00 1.94
803 813 5.585820 ATTACTGTGGGTTTGTTCGTTTT 57.414 34.783 0.00 0.00 0.00 2.43
804 814 6.056884 TCTATTACTGTGGGTTTGTTCGTTT 58.943 36.000 0.00 0.00 0.00 3.60
805 815 5.613329 TCTATTACTGTGGGTTTGTTCGTT 58.387 37.500 0.00 0.00 0.00 3.85
806 816 5.217978 TCTATTACTGTGGGTTTGTTCGT 57.782 39.130 0.00 0.00 0.00 3.85
807 817 6.204108 ACTTTCTATTACTGTGGGTTTGTTCG 59.796 38.462 0.00 0.00 0.00 3.95
808 818 7.227910 TGACTTTCTATTACTGTGGGTTTGTTC 59.772 37.037 0.00 0.00 0.00 3.18
809 819 7.057894 TGACTTTCTATTACTGTGGGTTTGTT 58.942 34.615 0.00 0.00 0.00 2.83
810 820 6.597562 TGACTTTCTATTACTGTGGGTTTGT 58.402 36.000 0.00 0.00 0.00 2.83
811 821 7.504924 TTGACTTTCTATTACTGTGGGTTTG 57.495 36.000 0.00 0.00 0.00 2.93
812 822 6.206829 GCTTGACTTTCTATTACTGTGGGTTT 59.793 38.462 0.00 0.00 0.00 3.27
820 830 6.881602 CCAAGGAAGCTTGACTTTCTATTACT 59.118 38.462 2.10 0.00 44.05 2.24
881 1014 7.921304 ACATATATATTCTCTGGTGGATGCAA 58.079 34.615 0.00 0.00 0.00 4.08
889 1022 9.672673 GGTTGCATTACATATATATTCTCTGGT 57.327 33.333 0.00 0.00 0.00 4.00
895 1028 6.256975 TCGCGGGTTGCATTACATATATATTC 59.743 38.462 6.13 0.00 46.97 1.75
896 1029 6.036735 GTCGCGGGTTGCATTACATATATATT 59.963 38.462 6.13 0.00 46.97 1.28
906 4664 0.678366 ATTGGTCGCGGGTTGCATTA 60.678 50.000 6.13 0.00 46.97 1.90
1303 5067 8.031864 CCTACTAGGCTAGTTCATCATGTAATG 58.968 40.741 30.46 3.91 42.20 1.90
1355 5120 1.691196 CCAAACACTCCAAGCCAAGA 58.309 50.000 0.00 0.00 0.00 3.02
1361 5126 1.535462 CGGTTAGCCAAACACTCCAAG 59.465 52.381 0.00 0.00 40.08 3.61
1363 5128 0.470766 ACGGTTAGCCAAACACTCCA 59.529 50.000 0.00 0.00 40.08 3.86
1368 5151 0.948678 GAGCAACGGTTAGCCAAACA 59.051 50.000 10.32 0.00 40.08 2.83
1387 5170 1.136000 CACACACACACACACACACAG 60.136 52.381 0.00 0.00 0.00 3.66
1418 5201 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
1419 5202 0.454285 GCACACACACACACACACAC 60.454 55.000 0.00 0.00 0.00 3.82
1420 5203 1.872468 GCACACACACACACACACA 59.128 52.632 0.00 0.00 0.00 3.72
1421 5204 1.225991 CGCACACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
1422 5205 1.669437 ACGCACACACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
1423 5206 1.225991 CACGCACACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
1424 5207 1.669437 ACACGCACACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
1425 5208 1.225991 CACACGCACACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
1426 5209 1.669437 ACACACGCACACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
1427 5210 1.225991 CACACACGCACACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
1428 5211 1.669437 ACACACACGCACACACACA 60.669 52.632 0.00 0.00 0.00 3.72
1429 5212 1.225991 CACACACACGCACACACAC 60.226 57.895 0.00 0.00 0.00 3.82
1430 5213 1.669437 ACACACACACGCACACACA 60.669 52.632 0.00 0.00 0.00 3.72
1431 5214 1.225991 CACACACACACGCACACAC 60.226 57.895 0.00 0.00 0.00 3.82
1432 5215 1.669437 ACACACACACACGCACACA 60.669 52.632 0.00 0.00 0.00 3.72
1433 5216 1.225991 CACACACACACACGCACAC 60.226 57.895 0.00 0.00 0.00 3.82
1434 5217 1.669437 ACACACACACACACGCACA 60.669 52.632 0.00 0.00 0.00 4.57
1435 5218 1.225991 CACACACACACACACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
1436 5219 1.374758 TCACACACACACACACGCA 60.375 52.632 0.00 0.00 0.00 5.24
1437 5220 1.060308 GTCACACACACACACACGC 59.940 57.895 0.00 0.00 0.00 5.34
1438 5221 1.005032 GATGTCACACACACACACACG 60.005 52.381 0.00 0.00 38.04 4.49
1439 5222 1.330521 GGATGTCACACACACACACAC 59.669 52.381 0.00 0.00 38.04 3.82
1440 5223 1.662517 GGATGTCACACACACACACA 58.337 50.000 0.00 0.00 38.04 3.72
1441 5224 0.944386 GGGATGTCACACACACACAC 59.056 55.000 0.00 0.00 38.04 3.82
1442 5225 0.179032 GGGGATGTCACACACACACA 60.179 55.000 0.00 0.00 38.04 3.72
1443 5226 0.108585 AGGGGATGTCACACACACAC 59.891 55.000 0.00 0.00 38.04 3.82
1444 5227 0.843309 AAGGGGATGTCACACACACA 59.157 50.000 0.00 0.00 38.04 3.72
1445 5228 1.202758 TCAAGGGGATGTCACACACAC 60.203 52.381 0.00 0.00 38.04 3.82
1446 5229 1.135960 TCAAGGGGATGTCACACACA 58.864 50.000 0.00 0.00 40.18 3.72
1447 5230 2.489329 CAATCAAGGGGATGTCACACAC 59.511 50.000 0.00 0.00 36.02 3.82
1448 5231 2.794103 CAATCAAGGGGATGTCACACA 58.206 47.619 0.00 0.00 36.02 3.72
1449 5232 1.474077 GCAATCAAGGGGATGTCACAC 59.526 52.381 0.00 0.00 36.02 3.82
1450 5233 1.838112 GCAATCAAGGGGATGTCACA 58.162 50.000 0.00 0.00 36.02 3.58
1451 5234 0.734889 CGCAATCAAGGGGATGTCAC 59.265 55.000 0.00 0.00 36.02 3.67
1452 5235 0.327924 ACGCAATCAAGGGGATGTCA 59.672 50.000 0.00 0.00 36.02 3.58
1453 5236 0.734889 CACGCAATCAAGGGGATGTC 59.265 55.000 0.00 0.00 36.02 3.06
1454 5237 0.327924 TCACGCAATCAAGGGGATGT 59.672 50.000 0.00 0.00 36.02 3.06
1455 5238 1.019673 CTCACGCAATCAAGGGGATG 58.980 55.000 0.00 0.00 36.02 3.51
1493 5276 4.572223 CCTCCTACTCTTCCCCTTTGACTA 60.572 50.000 0.00 0.00 0.00 2.59
1577 5370 0.032952 GTGTGCTGAGTGGTCCGTAA 59.967 55.000 0.00 0.00 0.00 3.18
1578 5371 1.110518 TGTGTGCTGAGTGGTCCGTA 61.111 55.000 0.00 0.00 0.00 4.02
1579 5372 2.421739 GTGTGCTGAGTGGTCCGT 59.578 61.111 0.00 0.00 0.00 4.69
1581 5374 1.146041 TGTGTGTGCTGAGTGGTCC 59.854 57.895 0.00 0.00 0.00 4.46
1582 5375 0.461870 TGTGTGTGTGCTGAGTGGTC 60.462 55.000 0.00 0.00 0.00 4.02
1583 5376 0.035534 TTGTGTGTGTGCTGAGTGGT 60.036 50.000 0.00 0.00 0.00 4.16
1585 5378 1.328680 GAGTTGTGTGTGTGCTGAGTG 59.671 52.381 0.00 0.00 0.00 3.51
1586 5379 1.066215 TGAGTTGTGTGTGTGCTGAGT 60.066 47.619 0.00 0.00 0.00 3.41
1587 5380 1.328680 GTGAGTTGTGTGTGTGCTGAG 59.671 52.381 0.00 0.00 0.00 3.35
1588 5381 1.066215 AGTGAGTTGTGTGTGTGCTGA 60.066 47.619 0.00 0.00 0.00 4.26
1589 5382 1.328680 GAGTGAGTTGTGTGTGTGCTG 59.671 52.381 0.00 0.00 0.00 4.41
1590 5383 1.066215 TGAGTGAGTTGTGTGTGTGCT 60.066 47.619 0.00 0.00 0.00 4.40
1591 5384 1.062587 GTGAGTGAGTTGTGTGTGTGC 59.937 52.381 0.00 0.00 0.00 4.57
1605 5398 2.666190 CGCCTGGTGGTGTGAGTG 60.666 66.667 0.00 0.00 38.95 3.51
1640 5437 0.112995 AAGGTGCCATCCAGCAAAGA 59.887 50.000 0.00 0.00 46.19 2.52
1642 5439 0.178967 TGAAGGTGCCATCCAGCAAA 60.179 50.000 0.00 0.00 46.19 3.68
1760 5563 6.151480 TCCTCCAATACGAATAAACCAAAACC 59.849 38.462 0.00 0.00 0.00 3.27
1761 5564 7.025365 GTCCTCCAATACGAATAAACCAAAAC 58.975 38.462 0.00 0.00 0.00 2.43
1770 5573 2.669781 ACCGGTCCTCCAATACGAATA 58.330 47.619 0.00 0.00 0.00 1.75
1779 5582 0.762842 CCATCCATACCGGTCCTCCA 60.763 60.000 12.40 0.00 35.57 3.86
1780 5583 0.763223 ACCATCCATACCGGTCCTCC 60.763 60.000 12.40 0.00 35.57 4.30
1785 5588 0.177141 CACGAACCATCCATACCGGT 59.823 55.000 13.98 13.98 35.57 5.28
1786 5589 1.157870 GCACGAACCATCCATACCGG 61.158 60.000 0.00 0.00 0.00 5.28
1798 5601 2.069273 ACTTGATAGTGCAGCACGAAC 58.931 47.619 19.96 13.99 39.64 3.95
1878 5681 4.581233 TCCCCTCTTTATTCCCTGATGAT 58.419 43.478 0.00 0.00 0.00 2.45
1879 5682 4.021007 TCCCCTCTTTATTCCCTGATGA 57.979 45.455 0.00 0.00 0.00 2.92
1880 5683 4.166919 AGTTCCCCTCTTTATTCCCTGATG 59.833 45.833 0.00 0.00 0.00 3.07
1881 5684 4.384465 AGTTCCCCTCTTTATTCCCTGAT 58.616 43.478 0.00 0.00 0.00 2.90
1886 5689 6.126739 ACAGATGTAGTTCCCCTCTTTATTCC 60.127 42.308 0.00 0.00 0.00 3.01
1899 5702 4.035091 TGCAACACAACACAGATGTAGTTC 59.965 41.667 0.00 0.00 38.45 3.01
1903 5706 4.154015 GCTATGCAACACAACACAGATGTA 59.846 41.667 0.00 0.00 38.45 2.29
1945 5749 2.760650 TGGTACCTGCATCAGTCAGTAG 59.239 50.000 14.36 0.00 0.00 2.57
1947 5751 1.644509 TGGTACCTGCATCAGTCAGT 58.355 50.000 14.36 0.00 0.00 3.41
2051 5855 3.504863 CTTGTGGAAAATCGATTGGCAG 58.495 45.455 12.25 0.00 0.00 4.85
2072 5876 1.656441 CCAGTTGTTGTCCAGCAGC 59.344 57.895 0.00 0.00 0.00 5.25
2122 5956 7.040686 ACCTGTGACAACATAAAACAGATAACC 60.041 37.037 2.80 0.00 40.54 2.85
2152 6010 2.621526 GAGGAAAAGAAAACGCAGGGAA 59.378 45.455 0.00 0.00 0.00 3.97
2154 6012 1.953686 TGAGGAAAAGAAAACGCAGGG 59.046 47.619 0.00 0.00 0.00 4.45
2156 6014 3.065371 AGTGTGAGGAAAAGAAAACGCAG 59.935 43.478 0.00 0.00 0.00 5.18
2157 6015 3.013921 AGTGTGAGGAAAAGAAAACGCA 58.986 40.909 0.00 0.00 0.00 5.24
2159 6017 5.522460 TGTCTAGTGTGAGGAAAAGAAAACG 59.478 40.000 0.00 0.00 0.00 3.60
2161 6019 7.387948 GCTATGTCTAGTGTGAGGAAAAGAAAA 59.612 37.037 0.00 0.00 0.00 2.29
2162 6020 6.874134 GCTATGTCTAGTGTGAGGAAAAGAAA 59.126 38.462 0.00 0.00 0.00 2.52
2163 6021 6.398918 GCTATGTCTAGTGTGAGGAAAAGAA 58.601 40.000 0.00 0.00 0.00 2.52
2164 6022 5.105310 GGCTATGTCTAGTGTGAGGAAAAGA 60.105 44.000 0.00 0.00 0.00 2.52
2165 6023 5.105146 AGGCTATGTCTAGTGTGAGGAAAAG 60.105 44.000 0.00 0.00 0.00 2.27
2166 6024 4.777896 AGGCTATGTCTAGTGTGAGGAAAA 59.222 41.667 0.00 0.00 0.00 2.29
2167 6025 4.353777 AGGCTATGTCTAGTGTGAGGAAA 58.646 43.478 0.00 0.00 0.00 3.13
2168 6026 3.982516 AGGCTATGTCTAGTGTGAGGAA 58.017 45.455 0.00 0.00 0.00 3.36
2169 6027 3.671740 AGGCTATGTCTAGTGTGAGGA 57.328 47.619 0.00 0.00 0.00 3.71
2170 6028 5.854010 TTTAGGCTATGTCTAGTGTGAGG 57.146 43.478 0.00 0.00 0.00 3.86
2171 6029 9.988815 AATAATTTAGGCTATGTCTAGTGTGAG 57.011 33.333 0.00 0.00 0.00 3.51
2172 6030 9.982651 GAATAATTTAGGCTATGTCTAGTGTGA 57.017 33.333 0.00 0.00 0.00 3.58
2173 6031 9.988815 AGAATAATTTAGGCTATGTCTAGTGTG 57.011 33.333 0.00 0.00 0.00 3.82
2174 6032 9.988815 CAGAATAATTTAGGCTATGTCTAGTGT 57.011 33.333 0.00 0.00 0.00 3.55
2175 6033 9.988815 ACAGAATAATTTAGGCTATGTCTAGTG 57.011 33.333 0.00 0.00 0.00 2.74
2177 6035 9.646427 GGACAGAATAATTTAGGCTATGTCTAG 57.354 37.037 16.02 0.00 35.89 2.43
2178 6036 9.154632 TGGACAGAATAATTTAGGCTATGTCTA 57.845 33.333 16.02 10.20 35.89 2.59
2179 6037 8.034313 TGGACAGAATAATTTAGGCTATGTCT 57.966 34.615 16.02 3.22 35.89 3.41
2180 6038 8.854614 ATGGACAGAATAATTTAGGCTATGTC 57.145 34.615 10.64 10.64 35.07 3.06
2181 6039 8.664079 AGATGGACAGAATAATTTAGGCTATGT 58.336 33.333 0.00 0.00 0.00 2.29
2185 6043 9.512588 CAATAGATGGACAGAATAATTTAGGCT 57.487 33.333 0.00 0.00 0.00 4.58
2186 6044 9.289782 ACAATAGATGGACAGAATAATTTAGGC 57.710 33.333 0.00 0.00 0.00 3.93
2191 6049 9.717942 GAGCTACAATAGATGGACAGAATAATT 57.282 33.333 0.00 0.00 0.00 1.40
2192 6050 9.099071 AGAGCTACAATAGATGGACAGAATAAT 57.901 33.333 0.00 0.00 0.00 1.28
2196 6054 7.013750 CAGTAGAGCTACAATAGATGGACAGAA 59.986 40.741 10.04 0.00 38.48 3.02
2203 6061 5.363979 TCGCAGTAGAGCTACAATAGATG 57.636 43.478 10.04 0.33 38.48 2.90
2212 6070 2.288457 GGCATGATTCGCAGTAGAGCTA 60.288 50.000 0.00 0.00 0.00 3.32
2238 6096 1.066143 ACGAATCTGTCCGCCAAGAAT 60.066 47.619 0.00 0.00 0.00 2.40
2275 6133 2.124151 GTTGCCGCATCCCTCCAT 60.124 61.111 0.00 0.00 0.00 3.41
2343 7487 0.465705 TGGGATCAATCAGCTCGGTC 59.534 55.000 0.00 0.00 0.00 4.79
2387 7531 5.394224 CGGTGAGAAGAGCCAAATAGAACTA 60.394 44.000 0.00 0.00 0.00 2.24
2411 7555 2.874701 AGCACATGGAAGATTGATACGC 59.125 45.455 0.00 0.00 0.00 4.42
2413 7557 7.066284 ACAGTTAAGCACATGGAAGATTGATAC 59.934 37.037 0.00 0.00 0.00 2.24
2416 7560 5.316167 ACAGTTAAGCACATGGAAGATTGA 58.684 37.500 0.00 0.00 0.00 2.57
2418 7562 6.151144 GGTAACAGTTAAGCACATGGAAGATT 59.849 38.462 0.00 0.00 0.00 2.40
2438 7582 4.394729 TCACAAACCTGGAGAATGGTAAC 58.605 43.478 0.00 0.00 35.17 2.50
2446 7590 1.059584 TGCCCTCACAAACCTGGAGA 61.060 55.000 0.00 0.00 0.00 3.71
2480 7624 2.742053 CCAAGAACAAGTGGTCCGTATG 59.258 50.000 0.00 0.00 30.36 2.39
2482 7626 2.036733 CTCCAAGAACAAGTGGTCCGTA 59.963 50.000 0.00 0.00 36.23 4.02
2485 7629 1.202818 AGCTCCAAGAACAAGTGGTCC 60.203 52.381 0.00 0.00 36.23 4.46
2513 7657 3.318313 ACTTCTCCAGTTTCTCCTCCAA 58.682 45.455 0.00 0.00 27.32 3.53
2516 7660 5.656480 GATGTACTTCTCCAGTTTCTCCTC 58.344 45.833 1.60 0.00 36.88 3.71
2524 7668 2.678836 CTCGTCGATGTACTTCTCCAGT 59.321 50.000 4.21 0.00 39.87 4.00
2704 7848 4.410099 ACTTTCCCAAATGAATCTCTGCA 58.590 39.130 0.00 0.00 0.00 4.41
2945 8091 7.793036 AGAGGGTATTTGTATACTGGAAACTC 58.207 38.462 4.17 4.54 37.39 3.01
3073 8246 8.693120 ACGGACTACATATGGATGTATATAGG 57.307 38.462 7.80 0.00 45.42 2.57
3127 8300 3.639538 CACATATACTCCCTCCGTTTCG 58.360 50.000 0.00 0.00 0.00 3.46
3132 8305 2.365617 ACTTGCACATATACTCCCTCCG 59.634 50.000 0.00 0.00 0.00 4.63
3427 8602 0.443869 CGTCATTGCCAAAGACTCCG 59.556 55.000 10.67 0.00 0.00 4.63
3580 8755 6.317789 TCTGATGCCTGAAAGTTTTACAAG 57.682 37.500 0.00 0.00 0.00 3.16
3889 9065 4.735578 GCATTACCTTGTCCATTGCATCAG 60.736 45.833 0.00 0.00 0.00 2.90
4001 9177 3.219281 AGTTTGACCTGTTAACGGCAAT 58.781 40.909 9.06 0.00 0.00 3.56
4038 9214 3.635373 CACTAGAGATGGCCATTGCAATT 59.365 43.478 21.84 5.58 40.13 2.32
4098 9278 7.249147 CAGAGTAGAAATGAAATCAGCAAAGG 58.751 38.462 0.00 0.00 0.00 3.11
4099 9279 6.746364 GCAGAGTAGAAATGAAATCAGCAAAG 59.254 38.462 0.00 0.00 0.00 2.77
4100 9280 6.207221 TGCAGAGTAGAAATGAAATCAGCAAA 59.793 34.615 0.00 0.00 0.00 3.68
4101 9281 5.706833 TGCAGAGTAGAAATGAAATCAGCAA 59.293 36.000 0.00 0.00 0.00 3.91
4200 9380 2.094894 CGCAACTAGCTGGATCTTGTTG 59.905 50.000 3.17 11.67 45.71 3.33
4428 9608 1.204786 TCTCCCCCTTTTCATCGGCA 61.205 55.000 0.00 0.00 0.00 5.69
4497 9677 3.198635 TGAACAAAGGCACAATTTTCCCA 59.801 39.130 0.00 0.00 0.00 4.37
4626 9806 4.824479 TCCACTGCATCATCTTTCTGTA 57.176 40.909 0.00 0.00 0.00 2.74
4647 9827 4.088634 TGCAAATGTTTCCCTGAAGCTAT 58.911 39.130 0.00 0.00 0.00 2.97
4679 9859 1.792118 GCCCTTGCGTTTCTTTCGGT 61.792 55.000 0.00 0.00 0.00 4.69
4746 9926 6.831727 TTGTGATCAACTTTGCAAGAAATG 57.168 33.333 0.00 0.00 0.00 2.32
4898 10078 4.591321 ATTTAGGCATCTCCAACTCCAA 57.409 40.909 0.00 0.00 37.29 3.53
5046 10227 3.473923 TCTGTGAGCTTGATGACACAA 57.526 42.857 5.33 0.00 41.55 3.33
5049 10230 3.181462 ACAGTTCTGTGAGCTTGATGACA 60.181 43.478 4.58 0.00 0.00 3.58
5154 10336 2.273557 CATGCAAAAGCAACCTATGGC 58.726 47.619 0.00 0.00 0.00 4.40
5180 10362 2.427095 GGCCCCTGCTTAAATACACTTG 59.573 50.000 0.00 0.00 37.74 3.16
5218 10400 8.153221 TCAAGGTAACCCTATTTCTCATACAA 57.847 34.615 0.00 0.00 41.56 2.41
5315 10516 6.712547 GGTATTTTTGCATCTATGGAGTAGCT 59.287 38.462 0.00 0.00 0.00 3.32
5316 10517 6.486657 TGGTATTTTTGCATCTATGGAGTAGC 59.513 38.462 0.00 0.00 0.00 3.58
5317 10518 8.450578 TTGGTATTTTTGCATCTATGGAGTAG 57.549 34.615 0.00 0.00 0.00 2.57
5318 10519 8.995027 ATTGGTATTTTTGCATCTATGGAGTA 57.005 30.769 0.00 0.00 0.00 2.59
5319 10520 7.902920 ATTGGTATTTTTGCATCTATGGAGT 57.097 32.000 0.00 0.00 0.00 3.85
5380 10666 7.510343 TGGATCTGAGATGTCCAATCATTACTA 59.490 37.037 0.00 0.00 38.99 1.82
5392 10678 2.102252 GAGTGGGTGGATCTGAGATGTC 59.898 54.545 0.00 0.00 0.00 3.06
5396 10682 0.331616 TCGAGTGGGTGGATCTGAGA 59.668 55.000 0.00 0.00 0.00 3.27
5401 10687 1.471119 TGTACTCGAGTGGGTGGATC 58.529 55.000 28.12 8.24 0.00 3.36
5413 10699 3.067742 CCCCCACTACACTATTGTACTCG 59.932 52.174 0.00 0.00 37.15 4.18
5455 10741 6.281405 GTCTGTATATGTTAGACAAGGTGGG 58.719 44.000 9.59 0.00 40.33 4.61
5457 10743 7.113658 AGGTCTGTATATGTTAGACAAGGTG 57.886 40.000 14.04 0.00 41.93 4.00
5484 10792 7.914346 ACTCGCTAAGTACGCCATATATTATTC 59.086 37.037 0.00 0.00 36.07 1.75
5498 10806 6.414408 TGTACTCACTAACTCGCTAAGTAC 57.586 41.667 0.00 0.00 37.17 2.73
5554 10862 3.632145 ACTGGATTTCAGAACGTTGCTTT 59.368 39.130 5.00 0.00 46.18 3.51
5589 10897 9.513906 TGTGAAAATGTGTGATAGAATAAGGAA 57.486 29.630 0.00 0.00 0.00 3.36
5606 10914 7.416154 ACAGCTTCAAATGAATGTGAAAATG 57.584 32.000 10.30 2.73 33.52 2.32
5607 10915 9.715121 ATAACAGCTTCAAATGAATGTGAAAAT 57.285 25.926 10.30 0.00 33.52 1.82
5658 10966 2.945890 GCTGGTTCCGATTCCTTCCATT 60.946 50.000 0.00 0.00 0.00 3.16
5659 10967 1.408822 GCTGGTTCCGATTCCTTCCAT 60.409 52.381 0.00 0.00 0.00 3.41
5660 10968 0.035439 GCTGGTTCCGATTCCTTCCA 60.035 55.000 0.00 0.00 0.00 3.53
5683 10991 1.508632 TTCCGCTAGTGTTGCTCAAC 58.491 50.000 1.99 5.84 41.50 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.