Multiple sequence alignment - TraesCS7B01G301300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G301300 chr7B 100.000 3932 0 0 1 3932 538217427 538221358 0.000000e+00 7262
1 TraesCS7B01G301300 chr7D 93.842 3394 141 31 577 3932 509919563 509922926 0.000000e+00 5048
2 TraesCS7B01G301300 chr7A 94.513 2825 127 13 1126 3932 580661861 580664675 0.000000e+00 4333
3 TraesCS7B01G301300 chr6B 90.598 585 44 5 1 576 62150136 62150718 0.000000e+00 765
4 TraesCS7B01G301300 chr1B 93.750 96 6 0 395 490 15383013 15383108 1.140000e-30 145
5 TraesCS7B01G301300 chr1B 93.750 96 6 0 395 490 15389004 15389099 1.140000e-30 145


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G301300 chr7B 538217427 538221358 3931 False 7262 7262 100.000 1 3932 1 chr7B.!!$F1 3931
1 TraesCS7B01G301300 chr7D 509919563 509922926 3363 False 5048 5048 93.842 577 3932 1 chr7D.!!$F1 3355
2 TraesCS7B01G301300 chr7A 580661861 580664675 2814 False 4333 4333 94.513 1126 3932 1 chr7A.!!$F1 2806
3 TraesCS7B01G301300 chr6B 62150136 62150718 582 False 765 765 90.598 1 576 1 chr6B.!!$F1 575

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
316 317 0.032130 GATAGCGTTCATGGCGGAGA 59.968 55.0 11.36 0.00 35.0 3.71 F
319 320 0.032678 AGCGTTCATGGCGGAGATAG 59.967 55.0 11.36 0.00 35.0 2.08 F
847 857 0.034337 GAACTGGGCCGAACTGTACA 59.966 55.0 0.00 0.00 0.0 2.90 F
848 858 0.034896 AACTGGGCCGAACTGTACAG 59.965 55.0 21.44 21.44 0.0 2.74 F
952 968 0.313672 TCGCCACTGCCATTTTTGTC 59.686 50.0 0.00 0.00 0.0 3.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1906 2142 0.103026 CTCCTCGCATCGTCCATCAA 59.897 55.000 0.00 0.0 0.00 2.57 R
2245 2481 0.794605 GTGAGCGCATTTTTCTCCGC 60.795 55.000 11.47 0.0 46.14 5.54 R
2620 2856 0.471591 ATTGCTGCCCTTTCACCCAA 60.472 50.000 0.00 0.0 0.00 4.12 R
2904 3140 7.332430 CAACCAGTTGCATAAATGTCAATCATT 59.668 33.333 0.00 0.0 39.72 2.57 R
3116 3352 6.151817 ACCTTTTGAATTGAGATACTGCCTTC 59.848 38.462 0.00 0.0 0.00 3.46 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 3.958147 ATGGAAGCACCGTCTGGCG 62.958 63.158 0.00 0.00 42.61 5.69
46 47 0.998727 GCGCAGAAAAAGCTCCAACG 60.999 55.000 0.30 0.00 0.00 4.10
80 81 3.530260 CCATGGATGGGTTGCGGC 61.530 66.667 5.56 0.00 44.31 6.53
81 82 2.755064 CATGGATGGGTTGCGGCA 60.755 61.111 0.00 0.00 0.00 5.69
82 83 2.755469 ATGGATGGGTTGCGGCAC 60.755 61.111 0.05 0.00 0.00 5.01
139 140 3.423154 CTGCACCGACCGCCTTTC 61.423 66.667 0.00 0.00 0.00 2.62
140 141 4.243008 TGCACCGACCGCCTTTCA 62.243 61.111 0.00 0.00 0.00 2.69
141 142 2.975799 GCACCGACCGCCTTTCAA 60.976 61.111 0.00 0.00 0.00 2.69
142 143 2.943653 CACCGACCGCCTTTCAAC 59.056 61.111 0.00 0.00 0.00 3.18
143 144 1.890041 CACCGACCGCCTTTCAACA 60.890 57.895 0.00 0.00 0.00 3.33
144 145 1.153127 ACCGACCGCCTTTCAACAA 60.153 52.632 0.00 0.00 0.00 2.83
145 146 1.281656 CCGACCGCCTTTCAACAAC 59.718 57.895 0.00 0.00 0.00 3.32
146 147 1.164041 CCGACCGCCTTTCAACAACT 61.164 55.000 0.00 0.00 0.00 3.16
147 148 0.234884 CGACCGCCTTTCAACAACTC 59.765 55.000 0.00 0.00 0.00 3.01
148 149 0.234884 GACCGCCTTTCAACAACTCG 59.765 55.000 0.00 0.00 0.00 4.18
149 150 1.082104 CCGCCTTTCAACAACTCGC 60.082 57.895 0.00 0.00 0.00 5.03
150 151 1.646540 CGCCTTTCAACAACTCGCA 59.353 52.632 0.00 0.00 0.00 5.10
151 152 0.657368 CGCCTTTCAACAACTCGCAC 60.657 55.000 0.00 0.00 0.00 5.34
152 153 0.380378 GCCTTTCAACAACTCGCACA 59.620 50.000 0.00 0.00 0.00 4.57
153 154 1.859998 GCCTTTCAACAACTCGCACAC 60.860 52.381 0.00 0.00 0.00 3.82
154 155 1.594518 CCTTTCAACAACTCGCACACG 60.595 52.381 0.00 0.00 42.01 4.49
155 156 0.247894 TTTCAACAACTCGCACACGC 60.248 50.000 0.00 0.00 39.84 5.34
156 157 2.042520 TTCAACAACTCGCACACGCC 62.043 55.000 0.00 0.00 39.84 5.68
157 158 3.636043 AACAACTCGCACACGCCG 61.636 61.111 0.00 0.00 39.84 6.46
158 159 4.884257 ACAACTCGCACACGCCGT 62.884 61.111 0.00 0.00 39.84 5.68
161 162 4.884257 ACTCGCACACGCCGTGTT 62.884 61.111 21.97 2.35 45.08 3.32
162 163 4.354212 CTCGCACACGCCGTGTTG 62.354 66.667 21.97 16.16 45.08 3.33
165 166 4.250431 GCACACGCCGTGTTGCTT 62.250 61.111 21.97 0.00 45.08 3.91
166 167 2.407210 CACACGCCGTGTTGCTTT 59.593 55.556 21.97 0.00 45.08 3.51
167 168 1.938814 CACACGCCGTGTTGCTTTG 60.939 57.895 21.97 4.35 45.08 2.77
168 169 2.403378 ACACGCCGTGTTGCTTTGT 61.403 52.632 18.60 0.00 45.08 2.83
169 170 1.090625 ACACGCCGTGTTGCTTTGTA 61.091 50.000 18.60 0.00 45.08 2.41
170 171 0.384230 CACGCCGTGTTGCTTTGTAG 60.384 55.000 9.53 0.00 0.00 2.74
181 182 1.797025 GCTTTGTAGCTTGAGGACGT 58.203 50.000 0.00 0.00 44.27 4.34
182 183 1.727335 GCTTTGTAGCTTGAGGACGTC 59.273 52.381 7.13 7.13 44.27 4.34
183 184 2.338500 CTTTGTAGCTTGAGGACGTCC 58.662 52.381 27.67 27.67 0.00 4.79
184 185 0.606604 TTGTAGCTTGAGGACGTCCC 59.393 55.000 30.82 21.56 36.42 4.46
185 186 0.541063 TGTAGCTTGAGGACGTCCCA 60.541 55.000 30.82 23.84 37.41 4.37
186 187 0.108756 GTAGCTTGAGGACGTCCCAC 60.109 60.000 30.82 23.90 37.41 4.61
187 188 0.251653 TAGCTTGAGGACGTCCCACT 60.252 55.000 30.82 21.21 37.41 4.00
188 189 1.122019 AGCTTGAGGACGTCCCACTT 61.122 55.000 30.82 12.83 37.41 3.16
189 190 0.670854 GCTTGAGGACGTCCCACTTC 60.671 60.000 30.82 21.26 37.41 3.01
190 191 0.037232 CTTGAGGACGTCCCACTTCC 60.037 60.000 30.82 13.29 36.84 3.46
191 192 1.477685 TTGAGGACGTCCCACTTCCC 61.478 60.000 30.82 11.62 37.24 3.97
192 193 2.995574 AGGACGTCCCACTTCCCG 60.996 66.667 30.82 0.00 37.24 5.14
193 194 4.754667 GGACGTCCCACTTCCCGC 62.755 72.222 24.75 0.00 30.94 6.13
194 195 3.998672 GACGTCCCACTTCCCGCA 61.999 66.667 3.51 0.00 0.00 5.69
195 196 3.934391 GACGTCCCACTTCCCGCAG 62.934 68.421 3.51 0.00 0.00 5.18
197 198 4.329545 GTCCCACTTCCCGCAGCA 62.330 66.667 0.00 0.00 0.00 4.41
198 199 3.565214 TCCCACTTCCCGCAGCAA 61.565 61.111 0.00 0.00 0.00 3.91
199 200 3.365265 CCCACTTCCCGCAGCAAC 61.365 66.667 0.00 0.00 0.00 4.17
200 201 3.726517 CCACTTCCCGCAGCAACG 61.727 66.667 0.00 0.00 0.00 4.10
201 202 2.664851 CACTTCCCGCAGCAACGA 60.665 61.111 0.00 0.00 34.06 3.85
202 203 2.665185 ACTTCCCGCAGCAACGAC 60.665 61.111 0.00 0.00 34.06 4.34
203 204 2.664851 CTTCCCGCAGCAACGACA 60.665 61.111 0.00 0.00 34.06 4.35
204 205 2.664851 TTCCCGCAGCAACGACAG 60.665 61.111 0.00 0.00 34.06 3.51
205 206 3.158537 TTCCCGCAGCAACGACAGA 62.159 57.895 0.00 0.00 34.06 3.41
206 207 2.434884 CCCGCAGCAACGACAGAT 60.435 61.111 0.00 0.00 34.06 2.90
207 208 2.743752 CCCGCAGCAACGACAGATG 61.744 63.158 0.00 0.00 34.06 2.90
208 209 2.097160 CGCAGCAACGACAGATGC 59.903 61.111 6.66 6.66 45.14 3.91
209 210 2.670210 CGCAGCAACGACAGATGCA 61.670 57.895 14.52 0.00 46.89 3.96
210 211 1.134075 GCAGCAACGACAGATGCAG 59.866 57.895 10.71 0.00 46.89 4.41
211 212 1.293963 GCAGCAACGACAGATGCAGA 61.294 55.000 10.71 0.00 46.89 4.26
212 213 0.441533 CAGCAACGACAGATGCAGAC 59.558 55.000 0.00 0.00 46.89 3.51
213 214 1.010935 AGCAACGACAGATGCAGACG 61.011 55.000 0.00 0.00 46.89 4.18
214 215 1.008875 GCAACGACAGATGCAGACGA 61.009 55.000 3.61 0.00 44.34 4.20
215 216 0.710567 CAACGACAGATGCAGACGAC 59.289 55.000 3.61 0.00 0.00 4.34
216 217 0.313987 AACGACAGATGCAGACGACA 59.686 50.000 3.61 0.00 0.00 4.35
217 218 0.313987 ACGACAGATGCAGACGACAA 59.686 50.000 3.61 0.00 0.00 3.18
218 219 0.710567 CGACAGATGCAGACGACAAC 59.289 55.000 0.00 0.00 0.00 3.32
219 220 1.071605 GACAGATGCAGACGACAACC 58.928 55.000 0.00 0.00 0.00 3.77
220 221 0.667487 ACAGATGCAGACGACAACCG 60.667 55.000 0.00 0.00 45.44 4.44
236 237 4.368808 CGTTGCAACGCCGGTGAG 62.369 66.667 35.89 14.78 46.06 3.51
237 238 3.276846 GTTGCAACGCCGGTGAGT 61.277 61.111 24.59 7.87 0.00 3.41
238 239 3.276091 TTGCAACGCCGGTGAGTG 61.276 61.111 24.59 19.39 0.00 3.51
241 242 3.716006 CAACGCCGGTGAGTGCTG 61.716 66.667 24.59 6.71 0.00 4.41
247 248 4.374702 CGGTGAGTGCTGCGCAAC 62.375 66.667 13.05 7.98 41.47 4.17
248 249 3.279116 GGTGAGTGCTGCGCAACA 61.279 61.111 13.05 11.40 41.47 3.33
249 250 2.715005 GTGAGTGCTGCGCAACAA 59.285 55.556 16.20 0.00 41.47 2.83
250 251 1.283793 GTGAGTGCTGCGCAACAAT 59.716 52.632 16.20 15.19 41.47 2.71
251 252 0.727122 GTGAGTGCTGCGCAACAATC 60.727 55.000 28.62 28.62 41.47 2.67
252 253 1.165284 TGAGTGCTGCGCAACAATCA 61.165 50.000 32.56 32.56 41.47 2.57
253 254 0.727122 GAGTGCTGCGCAACAATCAC 60.727 55.000 29.84 21.56 41.47 3.06
254 255 1.730547 GTGCTGCGCAACAATCACC 60.731 57.895 16.20 0.00 41.47 4.02
255 256 2.502510 GCTGCGCAACAATCACCG 60.503 61.111 13.05 0.00 0.00 4.94
256 257 2.176546 CTGCGCAACAATCACCGG 59.823 61.111 13.05 0.00 0.00 5.28
257 258 3.951655 CTGCGCAACAATCACCGGC 62.952 63.158 13.05 0.00 0.00 6.13
259 260 4.459331 CGCAACAATCACCGGCGG 62.459 66.667 27.06 27.06 43.63 6.13
260 261 3.361977 GCAACAATCACCGGCGGT 61.362 61.111 28.83 28.83 35.62 5.68
274 275 3.842126 CGGTGTCGATGCGTGCTG 61.842 66.667 0.00 0.00 39.00 4.41
275 276 4.152625 GGTGTCGATGCGTGCTGC 62.153 66.667 0.00 0.00 46.70 5.25
287 288 2.974148 TGCTGCACAGAAGCACCG 60.974 61.111 0.00 0.00 45.50 4.94
288 289 2.666190 GCTGCACAGAAGCACCGA 60.666 61.111 0.81 0.00 40.11 4.69
289 290 2.037136 GCTGCACAGAAGCACCGAT 61.037 57.895 0.81 0.00 40.11 4.18
290 291 1.792301 CTGCACAGAAGCACCGATG 59.208 57.895 0.00 0.00 40.11 3.84
291 292 0.952497 CTGCACAGAAGCACCGATGT 60.952 55.000 0.00 0.00 40.11 3.06
292 293 0.534877 TGCACAGAAGCACCGATGTT 60.535 50.000 0.00 0.00 40.11 2.71
293 294 0.166814 GCACAGAAGCACCGATGTTC 59.833 55.000 0.00 0.00 0.00 3.18
294 295 1.800805 CACAGAAGCACCGATGTTCT 58.199 50.000 0.00 0.00 30.82 3.01
295 296 1.462283 CACAGAAGCACCGATGTTCTG 59.538 52.381 16.07 16.07 42.93 3.02
296 297 0.445436 CAGAAGCACCGATGTTCTGC 59.555 55.000 8.53 0.00 37.26 4.26
297 298 1.016130 AGAAGCACCGATGTTCTGCG 61.016 55.000 0.00 0.00 35.98 5.18
298 299 1.005037 AAGCACCGATGTTCTGCGA 60.005 52.632 0.00 0.00 35.98 5.10
299 300 0.391661 AAGCACCGATGTTCTGCGAT 60.392 50.000 0.00 0.00 35.98 4.58
300 301 0.459899 AGCACCGATGTTCTGCGATA 59.540 50.000 0.00 0.00 35.98 2.92
301 302 0.855349 GCACCGATGTTCTGCGATAG 59.145 55.000 0.00 0.00 0.00 2.08
313 314 3.234390 CGATAGCGTTCATGGCGG 58.766 61.111 11.36 0.00 35.00 6.13
314 315 1.299850 CGATAGCGTTCATGGCGGA 60.300 57.895 11.36 0.00 35.00 5.54
315 316 1.278172 CGATAGCGTTCATGGCGGAG 61.278 60.000 11.36 0.00 35.00 4.63
316 317 0.032130 GATAGCGTTCATGGCGGAGA 59.968 55.000 11.36 0.00 35.00 3.71
317 318 0.681733 ATAGCGTTCATGGCGGAGAT 59.318 50.000 11.36 0.00 35.00 2.75
318 319 1.324383 TAGCGTTCATGGCGGAGATA 58.676 50.000 11.36 0.00 35.00 1.98
319 320 0.032678 AGCGTTCATGGCGGAGATAG 59.967 55.000 11.36 0.00 35.00 2.08
320 321 1.560860 GCGTTCATGGCGGAGATAGC 61.561 60.000 11.36 0.00 0.00 2.97
321 322 0.249447 CGTTCATGGCGGAGATAGCA 60.249 55.000 0.00 0.00 36.08 3.49
322 323 1.506493 GTTCATGGCGGAGATAGCAG 58.494 55.000 0.00 0.00 36.08 4.24
323 324 0.394192 TTCATGGCGGAGATAGCAGG 59.606 55.000 0.00 0.00 36.08 4.85
324 325 0.469892 TCATGGCGGAGATAGCAGGA 60.470 55.000 0.00 0.00 36.08 3.86
325 326 0.037512 CATGGCGGAGATAGCAGGAG 60.038 60.000 0.00 0.00 36.08 3.69
326 327 1.190833 ATGGCGGAGATAGCAGGAGG 61.191 60.000 0.00 0.00 36.08 4.30
327 328 1.834822 GGCGGAGATAGCAGGAGGT 60.835 63.158 0.00 0.00 36.08 3.85
328 329 1.403687 GGCGGAGATAGCAGGAGGTT 61.404 60.000 0.00 0.00 36.08 3.50
329 330 1.329256 GCGGAGATAGCAGGAGGTTA 58.671 55.000 0.00 0.00 34.19 2.85
330 331 1.271102 GCGGAGATAGCAGGAGGTTAG 59.729 57.143 0.00 0.00 34.19 2.34
331 332 2.865079 CGGAGATAGCAGGAGGTTAGA 58.135 52.381 0.00 0.00 0.00 2.10
332 333 2.817258 CGGAGATAGCAGGAGGTTAGAG 59.183 54.545 0.00 0.00 0.00 2.43
333 334 3.497048 CGGAGATAGCAGGAGGTTAGAGA 60.497 52.174 0.00 0.00 0.00 3.10
334 335 3.824443 GGAGATAGCAGGAGGTTAGAGAC 59.176 52.174 0.00 0.00 0.00 3.36
335 336 3.482436 AGATAGCAGGAGGTTAGAGACG 58.518 50.000 0.00 0.00 0.00 4.18
336 337 3.136809 AGATAGCAGGAGGTTAGAGACGA 59.863 47.826 0.00 0.00 0.00 4.20
337 338 2.217510 AGCAGGAGGTTAGAGACGAA 57.782 50.000 0.00 0.00 0.00 3.85
338 339 2.096248 AGCAGGAGGTTAGAGACGAAG 58.904 52.381 0.00 0.00 0.00 3.79
339 340 2.093106 GCAGGAGGTTAGAGACGAAGA 58.907 52.381 0.00 0.00 0.00 2.87
340 341 2.492484 GCAGGAGGTTAGAGACGAAGAA 59.508 50.000 0.00 0.00 0.00 2.52
341 342 3.428316 GCAGGAGGTTAGAGACGAAGAAG 60.428 52.174 0.00 0.00 0.00 2.85
342 343 4.011023 CAGGAGGTTAGAGACGAAGAAGA 58.989 47.826 0.00 0.00 0.00 2.87
343 344 4.095782 CAGGAGGTTAGAGACGAAGAAGAG 59.904 50.000 0.00 0.00 0.00 2.85
344 345 4.019141 AGGAGGTTAGAGACGAAGAAGAGA 60.019 45.833 0.00 0.00 0.00 3.10
345 346 4.701171 GGAGGTTAGAGACGAAGAAGAGAA 59.299 45.833 0.00 0.00 0.00 2.87
346 347 5.358725 GGAGGTTAGAGACGAAGAAGAGAAT 59.641 44.000 0.00 0.00 0.00 2.40
347 348 6.445357 AGGTTAGAGACGAAGAAGAGAATC 57.555 41.667 0.00 0.00 0.00 2.52
348 349 5.065474 AGGTTAGAGACGAAGAAGAGAATCG 59.935 44.000 0.00 0.00 42.67 3.34
349 350 3.414549 AGAGACGAAGAAGAGAATCGC 57.585 47.619 0.00 0.00 42.67 4.58
350 351 2.105659 GAGACGAAGAAGAGAATCGCG 58.894 52.381 0.00 0.00 42.67 5.87
351 352 1.469308 AGACGAAGAAGAGAATCGCGT 59.531 47.619 5.77 0.00 42.67 6.01
352 353 2.095161 AGACGAAGAAGAGAATCGCGTT 60.095 45.455 5.77 0.00 42.67 4.84
353 354 2.662156 GACGAAGAAGAGAATCGCGTTT 59.338 45.455 5.77 3.34 42.67 3.60
354 355 2.408704 ACGAAGAAGAGAATCGCGTTTG 59.591 45.455 7.23 0.00 42.67 2.93
355 356 2.222596 CGAAGAAGAGAATCGCGTTTGG 60.223 50.000 7.23 0.00 42.67 3.28
356 357 1.726853 AGAAGAGAATCGCGTTTGGG 58.273 50.000 7.23 0.00 42.67 4.12
357 358 0.727398 GAAGAGAATCGCGTTTGGGG 59.273 55.000 7.23 0.00 42.67 4.96
358 359 0.323629 AAGAGAATCGCGTTTGGGGA 59.676 50.000 7.23 0.00 42.67 4.81
359 360 0.323629 AGAGAATCGCGTTTGGGGAA 59.676 50.000 7.23 0.00 42.67 3.97
360 361 0.727398 GAGAATCGCGTTTGGGGAAG 59.273 55.000 7.23 0.00 41.37 3.46
361 362 0.323629 AGAATCGCGTTTGGGGAAGA 59.676 50.000 7.23 0.00 41.37 2.87
362 363 1.161843 GAATCGCGTTTGGGGAAGAA 58.838 50.000 7.23 0.00 41.37 2.52
363 364 1.130561 GAATCGCGTTTGGGGAAGAAG 59.869 52.381 7.23 0.00 41.37 2.85
364 365 0.323629 ATCGCGTTTGGGGAAGAAGA 59.676 50.000 5.77 0.00 41.37 2.87
365 366 0.320421 TCGCGTTTGGGGAAGAAGAG 60.320 55.000 5.77 0.00 34.22 2.85
366 367 0.320421 CGCGTTTGGGGAAGAAGAGA 60.320 55.000 0.00 0.00 0.00 3.10
367 368 1.876416 CGCGTTTGGGGAAGAAGAGAA 60.876 52.381 0.00 0.00 0.00 2.87
368 369 2.227194 GCGTTTGGGGAAGAAGAGAAA 58.773 47.619 0.00 0.00 0.00 2.52
369 370 2.031069 GCGTTTGGGGAAGAAGAGAAAC 60.031 50.000 0.00 0.00 0.00 2.78
370 371 2.223377 CGTTTGGGGAAGAAGAGAAACG 59.777 50.000 0.00 0.00 39.52 3.60
371 372 3.473625 GTTTGGGGAAGAAGAGAAACGA 58.526 45.455 0.00 0.00 0.00 3.85
372 373 3.402628 TTGGGGAAGAAGAGAAACGAG 57.597 47.619 0.00 0.00 0.00 4.18
373 374 2.326428 TGGGGAAGAAGAGAAACGAGT 58.674 47.619 0.00 0.00 0.00 4.18
374 375 2.037251 TGGGGAAGAAGAGAAACGAGTG 59.963 50.000 0.00 0.00 0.00 3.51
375 376 2.613223 GGGGAAGAAGAGAAACGAGTGG 60.613 54.545 0.00 0.00 0.00 4.00
376 377 2.037381 GGGAAGAAGAGAAACGAGTGGT 59.963 50.000 0.00 0.00 0.00 4.16
377 378 3.494573 GGGAAGAAGAGAAACGAGTGGTT 60.495 47.826 0.00 0.00 41.76 3.67
378 379 3.495001 GGAAGAAGAGAAACGAGTGGTTG 59.505 47.826 0.00 0.00 39.30 3.77
379 380 3.821421 AGAAGAGAAACGAGTGGTTGT 57.179 42.857 0.00 0.00 39.30 3.32
380 381 3.458189 AGAAGAGAAACGAGTGGTTGTG 58.542 45.455 0.00 0.00 39.30 3.33
381 382 2.240493 AGAGAAACGAGTGGTTGTGG 57.760 50.000 0.00 0.00 39.30 4.17
382 383 0.586802 GAGAAACGAGTGGTTGTGGC 59.413 55.000 0.00 0.00 39.30 5.01
383 384 0.180406 AGAAACGAGTGGTTGTGGCT 59.820 50.000 0.00 0.00 39.30 4.75
384 385 0.586802 GAAACGAGTGGTTGTGGCTC 59.413 55.000 0.00 0.00 39.30 4.70
385 386 0.107410 AAACGAGTGGTTGTGGCTCA 60.107 50.000 0.00 0.00 39.30 4.26
386 387 0.814010 AACGAGTGGTTGTGGCTCAC 60.814 55.000 0.00 0.00 37.50 3.51
387 388 1.961277 CGAGTGGTTGTGGCTCACC 60.961 63.158 3.33 0.00 32.73 4.02
388 389 1.961277 GAGTGGTTGTGGCTCACCG 60.961 63.158 3.33 0.00 39.70 4.94
395 396 3.807538 GTGGCTCACCGCATGCTG 61.808 66.667 17.13 12.36 46.41 4.41
398 399 3.503363 GCTCACCGCATGCTGGTC 61.503 66.667 24.93 14.25 37.72 4.02
399 400 2.267006 CTCACCGCATGCTGGTCT 59.733 61.111 24.93 8.16 37.72 3.85
400 401 1.376424 CTCACCGCATGCTGGTCTT 60.376 57.895 24.93 7.55 37.72 3.01
401 402 1.364626 CTCACCGCATGCTGGTCTTC 61.365 60.000 24.93 0.00 37.72 2.87
402 403 2.045926 ACCGCATGCTGGTCTTCC 60.046 61.111 22.94 0.00 33.35 3.46
403 404 2.046023 CCGCATGCTGGTCTTCCA 60.046 61.111 17.13 0.00 42.05 3.53
414 415 1.839994 TGGTCTTCCAGGCAGATAAGG 59.160 52.381 0.00 0.00 39.03 2.69
415 416 1.840635 GGTCTTCCAGGCAGATAAGGT 59.159 52.381 0.00 0.00 0.00 3.50
416 417 2.239907 GGTCTTCCAGGCAGATAAGGTT 59.760 50.000 0.00 0.00 0.00 3.50
417 418 3.274288 GTCTTCCAGGCAGATAAGGTTG 58.726 50.000 0.00 0.00 0.00 3.77
418 419 2.239654 TCTTCCAGGCAGATAAGGTTGG 59.760 50.000 0.00 0.00 0.00 3.77
419 420 1.965414 TCCAGGCAGATAAGGTTGGA 58.035 50.000 0.00 0.00 32.62 3.53
420 421 2.274542 TCCAGGCAGATAAGGTTGGAA 58.725 47.619 0.00 0.00 32.15 3.53
421 422 2.239654 TCCAGGCAGATAAGGTTGGAAG 59.760 50.000 0.00 0.00 32.15 3.46
422 423 2.025887 CCAGGCAGATAAGGTTGGAAGT 60.026 50.000 0.00 0.00 0.00 3.01
423 424 3.562176 CCAGGCAGATAAGGTTGGAAGTT 60.562 47.826 0.00 0.00 0.00 2.66
424 425 3.441572 CAGGCAGATAAGGTTGGAAGTTG 59.558 47.826 0.00 0.00 0.00 3.16
425 426 2.755103 GGCAGATAAGGTTGGAAGTTGG 59.245 50.000 0.00 0.00 0.00 3.77
426 427 3.421844 GCAGATAAGGTTGGAAGTTGGT 58.578 45.455 0.00 0.00 0.00 3.67
427 428 3.191371 GCAGATAAGGTTGGAAGTTGGTG 59.809 47.826 0.00 0.00 0.00 4.17
428 429 3.758554 CAGATAAGGTTGGAAGTTGGTGG 59.241 47.826 0.00 0.00 0.00 4.61
429 430 2.668144 TAAGGTTGGAAGTTGGTGGG 57.332 50.000 0.00 0.00 0.00 4.61
430 431 0.759060 AAGGTTGGAAGTTGGTGGGC 60.759 55.000 0.00 0.00 0.00 5.36
431 432 2.207229 GGTTGGAAGTTGGTGGGCC 61.207 63.158 0.00 0.00 0.00 5.80
432 433 2.200092 TTGGAAGTTGGTGGGCCC 59.800 61.111 17.59 17.59 0.00 5.80
433 434 3.801068 TTGGAAGTTGGTGGGCCCG 62.801 63.158 19.37 0.00 35.15 6.13
434 435 3.961414 GGAAGTTGGTGGGCCCGA 61.961 66.667 19.37 3.06 35.15 5.14
435 436 2.355115 GAAGTTGGTGGGCCCGAT 59.645 61.111 19.37 0.00 35.15 4.18
436 437 2.035626 AAGTTGGTGGGCCCGATG 59.964 61.111 19.37 0.00 35.15 3.84
437 438 2.478335 GAAGTTGGTGGGCCCGATGA 62.478 60.000 19.37 0.00 35.15 2.92
438 439 2.438434 GTTGGTGGGCCCGATGAG 60.438 66.667 19.37 0.00 35.15 2.90
439 440 2.609299 TTGGTGGGCCCGATGAGA 60.609 61.111 19.37 0.00 35.15 3.27
440 441 2.227757 TTGGTGGGCCCGATGAGAA 61.228 57.895 19.37 0.43 35.15 2.87
441 442 2.124695 GGTGGGCCCGATGAGAAC 60.125 66.667 19.37 7.55 0.00 3.01
442 443 2.511600 GTGGGCCCGATGAGAACG 60.512 66.667 19.37 0.00 0.00 3.95
443 444 3.000819 TGGGCCCGATGAGAACGT 61.001 61.111 19.37 0.00 0.00 3.99
444 445 2.511600 GGGCCCGATGAGAACGTG 60.512 66.667 5.69 0.00 0.00 4.49
445 446 2.511600 GGCCCGATGAGAACGTGG 60.512 66.667 0.00 0.00 0.00 4.94
446 447 2.264794 GCCCGATGAGAACGTGGT 59.735 61.111 0.00 0.00 0.00 4.16
447 448 1.375523 GCCCGATGAGAACGTGGTT 60.376 57.895 0.00 0.00 0.00 3.67
448 449 1.635663 GCCCGATGAGAACGTGGTTG 61.636 60.000 0.00 0.00 0.00 3.77
449 450 0.320421 CCCGATGAGAACGTGGTTGT 60.320 55.000 0.00 0.00 0.00 3.32
450 451 0.790207 CCGATGAGAACGTGGTTGTG 59.210 55.000 0.00 0.00 0.00 3.33
451 452 0.163788 CGATGAGAACGTGGTTGTGC 59.836 55.000 0.00 0.00 0.00 4.57
452 453 1.512926 GATGAGAACGTGGTTGTGCT 58.487 50.000 0.00 0.00 0.00 4.40
453 454 1.873591 GATGAGAACGTGGTTGTGCTT 59.126 47.619 0.00 0.00 0.00 3.91
454 455 1.295792 TGAGAACGTGGTTGTGCTTC 58.704 50.000 0.00 0.00 0.00 3.86
455 456 0.586802 GAGAACGTGGTTGTGCTTCC 59.413 55.000 0.00 0.00 0.00 3.46
456 457 0.107410 AGAACGTGGTTGTGCTTCCA 60.107 50.000 0.00 0.00 0.00 3.53
457 458 0.307760 GAACGTGGTTGTGCTTCCAG 59.692 55.000 0.00 0.00 34.16 3.86
458 459 1.101049 AACGTGGTTGTGCTTCCAGG 61.101 55.000 0.00 0.00 42.84 4.45
459 460 2.908073 CGTGGTTGTGCTTCCAGGC 61.908 63.158 0.00 0.00 33.86 4.85
460 461 2.203480 TGGTTGTGCTTCCAGGCC 60.203 61.111 0.00 0.00 0.00 5.19
461 462 2.203480 GGTTGTGCTTCCAGGCCA 60.203 61.111 5.01 0.00 0.00 5.36
462 463 1.832167 GGTTGTGCTTCCAGGCCAA 60.832 57.895 5.01 0.00 0.00 4.52
463 464 1.363807 GTTGTGCTTCCAGGCCAAC 59.636 57.895 5.01 0.00 36.79 3.77
464 465 1.109323 GTTGTGCTTCCAGGCCAACT 61.109 55.000 5.01 0.00 38.76 3.16
465 466 0.823356 TTGTGCTTCCAGGCCAACTC 60.823 55.000 5.01 0.00 0.00 3.01
466 467 1.228245 GTGCTTCCAGGCCAACTCA 60.228 57.895 5.01 0.00 0.00 3.41
467 468 0.610232 GTGCTTCCAGGCCAACTCAT 60.610 55.000 5.01 0.00 0.00 2.90
468 469 0.609957 TGCTTCCAGGCCAACTCATG 60.610 55.000 5.01 0.00 0.00 3.07
469 470 1.941999 GCTTCCAGGCCAACTCATGC 61.942 60.000 5.01 0.00 0.00 4.06
470 471 1.651240 CTTCCAGGCCAACTCATGCG 61.651 60.000 5.01 0.00 0.00 4.73
471 472 2.046023 CCAGGCCAACTCATGCGA 60.046 61.111 5.01 0.00 0.00 5.10
472 473 2.110967 CCAGGCCAACTCATGCGAG 61.111 63.158 5.01 0.00 45.49 5.03
473 474 1.078918 CAGGCCAACTCATGCGAGA 60.079 57.895 5.01 0.00 42.34 4.04
474 475 1.078848 AGGCCAACTCATGCGAGAC 60.079 57.895 5.01 0.00 42.34 3.36
475 476 2.109126 GGCCAACTCATGCGAGACC 61.109 63.158 0.00 0.00 42.34 3.85
476 477 2.456119 GCCAACTCATGCGAGACCG 61.456 63.158 0.00 0.00 42.34 4.79
487 488 2.815211 GAGACCGCATGCGAGCAA 60.815 61.111 39.90 0.00 42.83 3.91
488 489 2.806856 GAGACCGCATGCGAGCAAG 61.807 63.158 39.90 24.82 42.83 4.01
489 490 4.527157 GACCGCATGCGAGCAAGC 62.527 66.667 39.90 17.90 42.83 4.01
499 500 2.803670 GAGCAAGCACGCGTCGTA 60.804 61.111 9.86 0.00 38.32 3.43
500 501 2.126071 AGCAAGCACGCGTCGTAT 60.126 55.556 9.86 0.00 38.32 3.06
501 502 2.020016 GCAAGCACGCGTCGTATG 59.980 61.111 9.86 7.68 38.32 2.39
502 503 2.441378 GCAAGCACGCGTCGTATGA 61.441 57.895 9.86 0.00 38.32 2.15
503 504 1.752501 GCAAGCACGCGTCGTATGAT 61.753 55.000 9.86 0.00 38.32 2.45
504 505 0.645355 CAAGCACGCGTCGTATGATT 59.355 50.000 9.86 0.00 38.32 2.57
505 506 0.645355 AAGCACGCGTCGTATGATTG 59.355 50.000 9.86 0.00 38.32 2.67
506 507 0.179148 AGCACGCGTCGTATGATTGA 60.179 50.000 9.86 0.00 38.32 2.57
507 508 0.227234 GCACGCGTCGTATGATTGAG 59.773 55.000 9.86 0.00 38.32 3.02
508 509 1.545759 CACGCGTCGTATGATTGAGT 58.454 50.000 9.86 0.00 38.32 3.41
509 510 1.917955 CACGCGTCGTATGATTGAGTT 59.082 47.619 9.86 0.00 38.32 3.01
510 511 2.035674 CACGCGTCGTATGATTGAGTTC 60.036 50.000 9.86 0.00 38.32 3.01
511 512 1.185121 CGCGTCGTATGATTGAGTTCG 59.815 52.381 0.00 0.00 0.00 3.95
512 513 2.447250 GCGTCGTATGATTGAGTTCGA 58.553 47.619 0.00 0.00 0.00 3.71
513 514 3.043586 GCGTCGTATGATTGAGTTCGAT 58.956 45.455 0.00 0.00 0.00 3.59
514 515 3.118157 GCGTCGTATGATTGAGTTCGATC 59.882 47.826 2.91 2.91 37.30 3.69
515 516 3.664486 CGTCGTATGATTGAGTTCGATCC 59.336 47.826 6.85 0.00 36.20 3.36
516 517 4.607955 GTCGTATGATTGAGTTCGATCCA 58.392 43.478 6.85 0.00 36.20 3.41
517 518 5.041287 GTCGTATGATTGAGTTCGATCCAA 58.959 41.667 6.85 0.00 36.20 3.53
518 519 5.041287 TCGTATGATTGAGTTCGATCCAAC 58.959 41.667 6.85 0.00 36.20 3.77
519 520 4.085568 CGTATGATTGAGTTCGATCCAACG 60.086 45.833 14.12 14.12 37.45 4.10
520 521 1.999735 TGATTGAGTTCGATCCAACGC 59.000 47.619 0.12 0.12 36.20 4.84
521 522 1.327764 GATTGAGTTCGATCCAACGCC 59.672 52.381 4.64 0.00 31.90 5.68
522 523 0.320374 TTGAGTTCGATCCAACGCCT 59.680 50.000 4.64 0.00 0.00 5.52
523 524 0.108804 TGAGTTCGATCCAACGCCTC 60.109 55.000 4.64 0.00 34.31 4.70
524 525 1.140407 GAGTTCGATCCAACGCCTCG 61.140 60.000 0.00 0.00 0.00 4.63
525 526 2.508439 TTCGATCCAACGCCTCGC 60.508 61.111 0.00 0.00 32.62 5.03
537 538 3.103911 CCTCGCGACGTGGTTGAC 61.104 66.667 3.71 0.00 36.03 3.18
545 546 4.588084 CGTGGTTGACGCAACAAG 57.412 55.556 19.45 9.55 45.11 3.16
546 547 2.010670 CGTGGTTGACGCAACAAGA 58.989 52.632 19.45 5.20 45.11 3.02
547 548 0.375454 CGTGGTTGACGCAACAAGAA 59.625 50.000 19.45 4.64 45.11 2.52
548 549 1.202087 CGTGGTTGACGCAACAAGAAA 60.202 47.619 19.45 2.79 45.11 2.52
549 550 2.540769 CGTGGTTGACGCAACAAGAAAT 60.541 45.455 19.45 0.00 45.11 2.17
550 551 3.042887 GTGGTTGACGCAACAAGAAATC 58.957 45.455 19.45 5.83 45.11 2.17
551 552 2.685388 TGGTTGACGCAACAAGAAATCA 59.315 40.909 19.45 7.76 45.11 2.57
552 553 3.243035 TGGTTGACGCAACAAGAAATCAG 60.243 43.478 19.45 0.00 45.11 2.90
553 554 3.243068 GGTTGACGCAACAAGAAATCAGT 60.243 43.478 19.45 0.00 45.11 3.41
554 555 3.878086 TGACGCAACAAGAAATCAGTC 57.122 42.857 0.00 0.00 0.00 3.51
555 556 2.220824 TGACGCAACAAGAAATCAGTCG 59.779 45.455 0.00 0.00 0.00 4.18
556 557 1.531149 ACGCAACAAGAAATCAGTCGG 59.469 47.619 0.00 0.00 0.00 4.79
557 558 1.531149 CGCAACAAGAAATCAGTCGGT 59.469 47.619 0.00 0.00 0.00 4.69
558 559 2.411547 CGCAACAAGAAATCAGTCGGTC 60.412 50.000 0.00 0.00 0.00 4.79
559 560 2.808543 GCAACAAGAAATCAGTCGGTCT 59.191 45.455 0.00 0.00 0.00 3.85
560 561 3.994392 GCAACAAGAAATCAGTCGGTCTA 59.006 43.478 0.00 0.00 0.00 2.59
561 562 4.451096 GCAACAAGAAATCAGTCGGTCTAA 59.549 41.667 0.00 0.00 0.00 2.10
562 563 5.389935 GCAACAAGAAATCAGTCGGTCTAAG 60.390 44.000 0.00 0.00 0.00 2.18
563 564 5.470047 ACAAGAAATCAGTCGGTCTAAGT 57.530 39.130 0.00 0.00 0.00 2.24
564 565 5.855045 ACAAGAAATCAGTCGGTCTAAGTT 58.145 37.500 0.00 0.00 0.00 2.66
565 566 6.989659 ACAAGAAATCAGTCGGTCTAAGTTA 58.010 36.000 0.00 0.00 0.00 2.24
566 567 7.439381 ACAAGAAATCAGTCGGTCTAAGTTAA 58.561 34.615 0.00 0.00 0.00 2.01
567 568 7.929785 ACAAGAAATCAGTCGGTCTAAGTTAAA 59.070 33.333 0.00 0.00 0.00 1.52
568 569 7.886405 AGAAATCAGTCGGTCTAAGTTAAAC 57.114 36.000 0.00 0.00 0.00 2.01
569 570 7.439381 AGAAATCAGTCGGTCTAAGTTAAACA 58.561 34.615 0.00 0.00 0.00 2.83
570 571 8.095169 AGAAATCAGTCGGTCTAAGTTAAACAT 58.905 33.333 0.00 0.00 0.00 2.71
571 572 8.617290 AAATCAGTCGGTCTAAGTTAAACATT 57.383 30.769 0.00 0.00 0.00 2.71
572 573 8.617290 AATCAGTCGGTCTAAGTTAAACATTT 57.383 30.769 0.00 0.00 0.00 2.32
573 574 8.617290 ATCAGTCGGTCTAAGTTAAACATTTT 57.383 30.769 0.00 0.00 0.00 1.82
574 575 8.080083 TCAGTCGGTCTAAGTTAAACATTTTC 57.920 34.615 0.00 0.00 0.00 2.29
575 576 7.172019 TCAGTCGGTCTAAGTTAAACATTTTCC 59.828 37.037 0.00 0.00 0.00 3.13
578 579 8.294577 GTCGGTCTAAGTTAAACATTTTCCATT 58.705 33.333 0.00 0.00 0.00 3.16
596 597 3.608796 CATTTTCAAATGGGCCGGAATT 58.391 40.909 5.05 0.00 41.54 2.17
687 688 8.595362 ATTCATGGATCCGTAGAGAATACATA 57.405 34.615 13.70 0.00 0.00 2.29
688 689 8.417273 TTCATGGATCCGTAGAGAATACATAA 57.583 34.615 6.04 0.00 0.00 1.90
838 848 1.574428 CGTCAAAAGAACTGGGCCG 59.426 57.895 0.00 0.00 0.00 6.13
839 849 0.882927 CGTCAAAAGAACTGGGCCGA 60.883 55.000 0.00 0.00 0.00 5.54
840 850 1.314730 GTCAAAAGAACTGGGCCGAA 58.685 50.000 0.00 0.00 0.00 4.30
841 851 1.001706 GTCAAAAGAACTGGGCCGAAC 60.002 52.381 0.00 0.00 0.00 3.95
842 852 1.133915 TCAAAAGAACTGGGCCGAACT 60.134 47.619 0.00 0.00 0.00 3.01
843 853 1.001378 CAAAAGAACTGGGCCGAACTG 60.001 52.381 0.00 0.00 0.00 3.16
844 854 0.182775 AAAGAACTGGGCCGAACTGT 59.817 50.000 0.00 0.00 0.00 3.55
845 855 1.053424 AAGAACTGGGCCGAACTGTA 58.947 50.000 0.00 0.00 0.00 2.74
846 856 0.320697 AGAACTGGGCCGAACTGTAC 59.679 55.000 0.00 0.00 0.00 2.90
847 857 0.034337 GAACTGGGCCGAACTGTACA 59.966 55.000 0.00 0.00 0.00 2.90
848 858 0.034896 AACTGGGCCGAACTGTACAG 59.965 55.000 21.44 21.44 0.00 2.74
849 859 1.079127 CTGGGCCGAACTGTACAGG 60.079 63.158 26.12 10.99 0.00 4.00
852 862 2.663196 GCCGAACTGTACAGGCCT 59.337 61.111 26.12 0.00 43.54 5.19
853 863 1.448013 GCCGAACTGTACAGGCCTC 60.448 63.158 26.12 17.26 43.54 4.70
854 864 1.889530 GCCGAACTGTACAGGCCTCT 61.890 60.000 26.12 2.28 43.54 3.69
855 865 1.471119 CCGAACTGTACAGGCCTCTA 58.529 55.000 26.12 0.00 0.00 2.43
856 866 2.032620 CCGAACTGTACAGGCCTCTAT 58.967 52.381 26.12 0.73 0.00 1.98
857 867 2.431057 CCGAACTGTACAGGCCTCTATT 59.569 50.000 26.12 9.87 0.00 1.73
858 868 3.635373 CCGAACTGTACAGGCCTCTATTA 59.365 47.826 26.12 0.00 0.00 0.98
859 869 4.098960 CCGAACTGTACAGGCCTCTATTAA 59.901 45.833 26.12 0.00 0.00 1.40
860 870 5.282510 CGAACTGTACAGGCCTCTATTAAG 58.717 45.833 26.12 0.00 0.00 1.85
861 871 5.602628 GAACTGTACAGGCCTCTATTAAGG 58.397 45.833 26.12 0.00 39.62 2.69
862 872 4.621769 ACTGTACAGGCCTCTATTAAGGT 58.378 43.478 26.12 0.00 38.79 3.50
863 873 4.406003 ACTGTACAGGCCTCTATTAAGGTG 59.594 45.833 26.12 0.00 38.79 4.00
864 874 3.134081 TGTACAGGCCTCTATTAAGGTGC 59.866 47.826 0.00 0.00 38.79 5.01
913 923 2.049802 CAAGCCTTGTGCCTTGCG 60.050 61.111 0.00 0.00 42.71 4.85
926 942 3.621892 CTTGCGGCTCAGCTTTGCC 62.622 63.158 14.91 14.91 45.25 4.52
944 960 2.031012 CTTCACTCGCCACTGCCA 59.969 61.111 0.00 0.00 0.00 4.92
950 966 0.314935 ACTCGCCACTGCCATTTTTG 59.685 50.000 0.00 0.00 0.00 2.44
951 967 0.314935 CTCGCCACTGCCATTTTTGT 59.685 50.000 0.00 0.00 0.00 2.83
952 968 0.313672 TCGCCACTGCCATTTTTGTC 59.686 50.000 0.00 0.00 0.00 3.18
953 969 0.314935 CGCCACTGCCATTTTTGTCT 59.685 50.000 0.00 0.00 0.00 3.41
999 1018 1.067495 CCTCCTCGTCTCACTCAAACC 60.067 57.143 0.00 0.00 0.00 3.27
1095 1114 3.449227 CTCCACGCGCACCTCCTA 61.449 66.667 5.73 0.00 0.00 2.94
1425 1444 2.572284 GGCTACGGCGACTCTGTT 59.428 61.111 16.62 0.00 39.81 3.16
1428 1447 0.798771 GCTACGGCGACTCTGTTCTG 60.799 60.000 16.62 0.00 35.51 3.02
1544 1780 1.741706 CAGGCTGTTCGATCAAATGCT 59.258 47.619 6.28 0.00 0.00 3.79
1548 1784 3.166657 GCTGTTCGATCAAATGCTTGTC 58.833 45.455 0.00 0.00 33.94 3.18
1560 1796 1.951209 TGCTTGTCAGGGATCTGGTA 58.049 50.000 0.00 0.00 41.23 3.25
1656 1892 3.785859 GAGGATGGGACGCTGGCA 61.786 66.667 0.00 0.00 0.00 4.92
1662 1898 4.101448 GGGACGCTGGCACCTGAT 62.101 66.667 0.00 0.00 0.00 2.90
1695 1931 3.239253 GGGGTCGTGTCAGGGTGT 61.239 66.667 0.00 0.00 0.00 4.16
1701 1937 2.194597 GTGTCAGGGTGTGGGCAA 59.805 61.111 0.00 0.00 0.00 4.52
1735 1971 0.465278 GCTTGGGAAGAGGCTCCATC 60.465 60.000 11.71 10.07 37.20 3.51
1809 2045 8.786898 GTGCTAATGGATATGTATGTCAAATGT 58.213 33.333 0.00 0.00 0.00 2.71
1812 2048 9.288576 CTAATGGATATGTATGTCAAATGTGGT 57.711 33.333 0.00 0.00 0.00 4.16
1906 2142 3.244630 TGTTGCCTATACAAAGTTCGGGT 60.245 43.478 0.00 0.00 0.00 5.28
1980 2216 2.117156 GTGGAATGCGCTGATGGCT 61.117 57.895 9.73 0.00 39.13 4.75
2019 2255 2.044551 GGCAAGGAGGCTCTTGGG 60.045 66.667 15.23 4.35 43.06 4.12
2022 2258 0.328258 GCAAGGAGGCTCTTGGGTTA 59.672 55.000 15.23 0.00 43.06 2.85
2160 2396 3.550656 CGACACCGGCTTTCACTC 58.449 61.111 0.00 0.00 0.00 3.51
2245 2481 6.536224 GGCCATCCATGTTTTCAAAGATTTAG 59.464 38.462 0.00 0.00 0.00 1.85
2278 2514 0.950555 GCTCACGTGGACAGCAATGA 60.951 55.000 19.54 0.00 33.06 2.57
2427 2663 0.672401 TGGTTAAAGAAGGCCGCGAG 60.672 55.000 8.23 0.00 0.00 5.03
2457 2693 7.496346 TTCCTTACTGGTCTCAAAGTATCAT 57.504 36.000 0.00 0.00 37.07 2.45
2509 2745 5.777223 TGTATGATAGACTTGCTAGGCAGAT 59.223 40.000 3.21 0.00 40.61 2.90
2620 2856 7.058023 TGTAGGATGCACGGTAATATTACTT 57.942 36.000 21.86 9.35 34.16 2.24
3116 3352 1.469251 GCAATTCCAGTGCAGATGCTG 60.469 52.381 6.35 0.00 41.80 4.41
3469 3726 7.025963 GGAAGTTGCAAAAGATGACTCTTATG 58.974 38.462 0.00 0.00 40.93 1.90
3493 3750 3.990318 AACCAAAAGAGCACTGTAAGC 57.010 42.857 0.00 0.00 37.60 3.09
3660 3920 4.872664 ACGTCACTTAGAGTCTGGAAAAG 58.127 43.478 1.86 0.63 0.00 2.27
3677 3937 5.115480 GGAAAAGTAGCATCTCTTCTCCTG 58.885 45.833 0.00 0.00 30.66 3.86
3678 3938 5.105146 GGAAAAGTAGCATCTCTTCTCCTGA 60.105 44.000 0.00 0.00 30.66 3.86
3721 3981 3.902881 TTGAATCTCCTGAGAGCCTTC 57.097 47.619 2.95 3.10 41.33 3.46
3751 4012 4.218852 TCTTCGTGGTCCAACAAAACTTTT 59.781 37.500 0.00 0.00 0.00 2.27
3820 4081 3.448301 CCCATTGTATTCAGCCATGTGTT 59.552 43.478 0.00 0.00 0.00 3.32
3868 4129 4.467769 CCAATTGGCATCAGACTCCTTAT 58.532 43.478 12.53 0.00 0.00 1.73
3926 4188 6.267242 TGTTATGCCATATGCCAATGTTATGT 59.733 34.615 0.00 0.00 40.16 2.29
3927 4189 4.852134 TGCCATATGCCAATGTTATGTC 57.148 40.909 0.00 0.00 40.16 3.06
3929 4191 3.828451 GCCATATGCCAATGTTATGTCCT 59.172 43.478 0.00 0.00 0.00 3.85
3930 4192 4.082571 GCCATATGCCAATGTTATGTCCTC 60.083 45.833 0.00 0.00 0.00 3.71
3931 4193 5.072055 CCATATGCCAATGTTATGTCCTCA 58.928 41.667 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.030638 TGCGTTGGAGCTTTTTCTGC 59.969 50.000 0.00 0.00 38.13 4.26
32 33 1.131771 GCTTGCGTTGGAGCTTTTTC 58.868 50.000 0.00 0.00 38.13 2.29
62 63 3.530260 CCGCAACCCATCCATGGC 61.530 66.667 6.96 0.00 46.70 4.40
65 66 2.755469 GTGCCGCAACCCATCCAT 60.755 61.111 0.00 0.00 0.00 3.41
122 123 3.423154 GAAAGGCGGTCGGTGCAG 61.423 66.667 0.00 0.00 0.00 4.41
123 124 3.758973 TTGAAAGGCGGTCGGTGCA 62.759 57.895 0.00 0.00 0.00 4.57
124 125 2.975799 TTGAAAGGCGGTCGGTGC 60.976 61.111 0.00 0.00 0.00 5.01
125 126 1.440938 TTGTTGAAAGGCGGTCGGTG 61.441 55.000 0.00 0.00 0.00 4.94
126 127 1.153127 TTGTTGAAAGGCGGTCGGT 60.153 52.632 0.00 0.00 0.00 4.69
127 128 1.164041 AGTTGTTGAAAGGCGGTCGG 61.164 55.000 0.00 0.00 0.00 4.79
128 129 0.234884 GAGTTGTTGAAAGGCGGTCG 59.765 55.000 0.00 0.00 0.00 4.79
129 130 0.234884 CGAGTTGTTGAAAGGCGGTC 59.765 55.000 0.00 0.00 0.00 4.79
130 131 1.782028 GCGAGTTGTTGAAAGGCGGT 61.782 55.000 0.00 0.00 0.00 5.68
131 132 1.082104 GCGAGTTGTTGAAAGGCGG 60.082 57.895 0.00 0.00 0.00 6.13
132 133 0.657368 GTGCGAGTTGTTGAAAGGCG 60.657 55.000 0.00 0.00 0.00 5.52
133 134 0.380378 TGTGCGAGTTGTTGAAAGGC 59.620 50.000 0.00 0.00 0.00 4.35
134 135 1.594518 CGTGTGCGAGTTGTTGAAAGG 60.595 52.381 0.00 0.00 41.33 3.11
135 136 1.730176 CGTGTGCGAGTTGTTGAAAG 58.270 50.000 0.00 0.00 41.33 2.62
136 137 0.247894 GCGTGTGCGAGTTGTTGAAA 60.248 50.000 0.00 0.00 41.33 2.69
137 138 1.350319 GCGTGTGCGAGTTGTTGAA 59.650 52.632 0.00 0.00 41.33 2.69
138 139 2.530497 GGCGTGTGCGAGTTGTTGA 61.530 57.895 0.00 0.00 44.10 3.18
139 140 2.052237 GGCGTGTGCGAGTTGTTG 60.052 61.111 0.00 0.00 44.10 3.33
140 141 3.636043 CGGCGTGTGCGAGTTGTT 61.636 61.111 0.00 0.00 44.10 2.83
141 142 4.884257 ACGGCGTGTGCGAGTTGT 62.884 61.111 13.76 0.00 44.10 3.32
142 143 4.354212 CACGGCGTGTGCGAGTTG 62.354 66.667 30.56 2.64 42.70 3.16
151 152 0.384230 CTACAAAGCAACACGGCGTG 60.384 55.000 35.89 35.89 39.27 5.34
152 153 1.938861 CTACAAAGCAACACGGCGT 59.061 52.632 6.77 6.77 39.27 5.68
153 154 4.818417 CTACAAAGCAACACGGCG 57.182 55.556 4.80 4.80 39.27 6.46
163 164 2.338500 GGACGTCCTCAAGCTACAAAG 58.662 52.381 27.64 0.00 0.00 2.77
164 165 1.001633 GGGACGTCCTCAAGCTACAAA 59.998 52.381 32.52 0.00 35.95 2.83
165 166 0.606604 GGGACGTCCTCAAGCTACAA 59.393 55.000 32.52 0.00 35.95 2.41
166 167 0.541063 TGGGACGTCCTCAAGCTACA 60.541 55.000 32.52 17.18 36.20 2.74
167 168 0.108756 GTGGGACGTCCTCAAGCTAC 60.109 60.000 32.52 14.74 36.20 3.58
168 169 0.251653 AGTGGGACGTCCTCAAGCTA 60.252 55.000 32.52 9.04 36.20 3.32
169 170 1.122019 AAGTGGGACGTCCTCAAGCT 61.122 55.000 32.52 18.95 36.20 3.74
170 171 0.670854 GAAGTGGGACGTCCTCAAGC 60.671 60.000 32.52 16.93 36.20 4.01
171 172 0.037232 GGAAGTGGGACGTCCTCAAG 60.037 60.000 32.52 0.00 42.40 3.02
172 173 1.477685 GGGAAGTGGGACGTCCTCAA 61.478 60.000 32.52 16.76 44.60 3.02
173 174 1.911766 GGGAAGTGGGACGTCCTCA 60.912 63.158 32.52 24.83 44.60 3.86
174 175 2.979649 GGGAAGTGGGACGTCCTC 59.020 66.667 32.52 24.30 44.60 3.71
175 176 2.995574 CGGGAAGTGGGACGTCCT 60.996 66.667 32.52 14.45 44.60 3.85
176 177 4.754667 GCGGGAAGTGGGACGTCC 62.755 72.222 27.04 27.04 44.50 4.79
177 178 3.934391 CTGCGGGAAGTGGGACGTC 62.934 68.421 7.13 7.13 0.00 4.34
178 179 4.003788 CTGCGGGAAGTGGGACGT 62.004 66.667 0.00 0.00 0.00 4.34
180 181 3.842925 TTGCTGCGGGAAGTGGGAC 62.843 63.158 0.00 0.00 0.00 4.46
181 182 3.565214 TTGCTGCGGGAAGTGGGA 61.565 61.111 0.00 0.00 0.00 4.37
182 183 3.365265 GTTGCTGCGGGAAGTGGG 61.365 66.667 0.00 0.00 0.00 4.61
183 184 3.726517 CGTTGCTGCGGGAAGTGG 61.727 66.667 0.00 0.00 0.00 4.00
184 185 2.664851 TCGTTGCTGCGGGAAGTG 60.665 61.111 0.00 0.00 0.00 3.16
185 186 2.665185 GTCGTTGCTGCGGGAAGT 60.665 61.111 0.00 0.00 0.00 3.01
186 187 2.664851 TGTCGTTGCTGCGGGAAG 60.665 61.111 0.00 0.00 0.00 3.46
187 188 2.449031 ATCTGTCGTTGCTGCGGGAA 62.449 55.000 0.00 0.00 0.00 3.97
188 189 2.942796 ATCTGTCGTTGCTGCGGGA 61.943 57.895 0.00 0.00 0.00 5.14
189 190 2.434884 ATCTGTCGTTGCTGCGGG 60.435 61.111 0.00 0.00 0.00 6.13
190 191 2.780643 CATCTGTCGTTGCTGCGG 59.219 61.111 0.00 0.00 0.00 5.69
191 192 2.097160 GCATCTGTCGTTGCTGCG 59.903 61.111 0.00 0.00 35.95 5.18
192 193 1.134075 CTGCATCTGTCGTTGCTGC 59.866 57.895 0.00 0.00 39.60 5.25
193 194 0.441533 GTCTGCATCTGTCGTTGCTG 59.558 55.000 0.00 0.00 39.60 4.41
194 195 1.010935 CGTCTGCATCTGTCGTTGCT 61.011 55.000 0.00 0.00 39.60 3.91
195 196 1.008875 TCGTCTGCATCTGTCGTTGC 61.009 55.000 0.00 0.00 39.33 4.17
196 197 0.710567 GTCGTCTGCATCTGTCGTTG 59.289 55.000 0.00 0.00 0.00 4.10
197 198 0.313987 TGTCGTCTGCATCTGTCGTT 59.686 50.000 0.00 0.00 0.00 3.85
198 199 0.313987 TTGTCGTCTGCATCTGTCGT 59.686 50.000 0.00 0.00 0.00 4.34
199 200 0.710567 GTTGTCGTCTGCATCTGTCG 59.289 55.000 0.00 0.00 0.00 4.35
200 201 1.071605 GGTTGTCGTCTGCATCTGTC 58.928 55.000 0.00 0.00 0.00 3.51
201 202 0.667487 CGGTTGTCGTCTGCATCTGT 60.667 55.000 0.00 0.00 0.00 3.41
202 203 2.073307 CGGTTGTCGTCTGCATCTG 58.927 57.895 0.00 0.00 0.00 2.90
203 204 4.578913 CGGTTGTCGTCTGCATCT 57.421 55.556 0.00 0.00 0.00 2.90
220 221 3.276846 ACTCACCGGCGTTGCAAC 61.277 61.111 19.89 19.89 0.00 4.17
221 222 3.276091 CACTCACCGGCGTTGCAA 61.276 61.111 6.01 0.00 0.00 4.08
224 225 3.716006 CAGCACTCACCGGCGTTG 61.716 66.667 6.01 0.62 34.54 4.10
239 240 2.176546 CCGGTGATTGTTGCGCAG 59.823 61.111 11.31 0.00 0.00 5.18
240 241 4.036804 GCCGGTGATTGTTGCGCA 62.037 61.111 5.66 5.66 0.00 6.09
242 243 4.459331 CCGCCGGTGATTGTTGCG 62.459 66.667 18.79 2.85 44.47 4.85
243 244 3.361977 ACCGCCGGTGATTGTTGC 61.362 61.111 18.79 0.00 32.98 4.17
257 258 3.842126 CAGCACGCATCGACACCG 61.842 66.667 0.00 0.00 37.07 4.94
258 259 4.152625 GCAGCACGCATCGACACC 62.153 66.667 0.00 0.00 41.79 4.16
267 268 3.653009 TGCTTCTGTGCAGCACGC 61.653 61.111 20.67 17.19 42.49 5.34
272 273 0.952497 ACATCGGTGCTTCTGTGCAG 60.952 55.000 0.00 0.00 44.20 4.41
273 274 0.534877 AACATCGGTGCTTCTGTGCA 60.535 50.000 0.00 0.00 41.05 4.57
274 275 0.166814 GAACATCGGTGCTTCTGTGC 59.833 55.000 0.00 0.00 0.00 4.57
275 276 1.462283 CAGAACATCGGTGCTTCTGTG 59.538 52.381 22.35 8.39 37.95 3.66
276 277 1.800805 CAGAACATCGGTGCTTCTGT 58.199 50.000 22.35 1.82 37.95 3.41
277 278 0.445436 GCAGAACATCGGTGCTTCTG 59.555 55.000 24.55 24.55 41.36 3.02
278 279 1.016130 CGCAGAACATCGGTGCTTCT 61.016 55.000 0.00 1.45 34.92 2.85
279 280 1.014044 TCGCAGAACATCGGTGCTTC 61.014 55.000 0.00 0.00 34.92 3.86
280 281 0.391661 ATCGCAGAACATCGGTGCTT 60.392 50.000 0.00 0.00 43.58 3.91
281 282 0.459899 TATCGCAGAACATCGGTGCT 59.540 50.000 0.00 0.00 43.58 4.40
282 283 0.855349 CTATCGCAGAACATCGGTGC 59.145 55.000 0.00 0.00 43.58 5.01
283 284 0.855349 GCTATCGCAGAACATCGGTG 59.145 55.000 0.00 0.00 43.58 4.94
284 285 0.595053 CGCTATCGCAGAACATCGGT 60.595 55.000 0.00 0.00 43.58 4.69
285 286 0.595053 ACGCTATCGCAGAACATCGG 60.595 55.000 0.00 0.00 43.58 4.18
286 287 1.188138 GAACGCTATCGCAGAACATCG 59.812 52.381 0.00 0.00 43.58 3.84
287 288 2.193447 TGAACGCTATCGCAGAACATC 58.807 47.619 0.00 0.00 43.58 3.06
288 289 2.293677 TGAACGCTATCGCAGAACAT 57.706 45.000 0.00 0.00 43.58 2.71
289 290 1.926510 CATGAACGCTATCGCAGAACA 59.073 47.619 0.00 0.00 43.58 3.18
290 291 1.258982 CCATGAACGCTATCGCAGAAC 59.741 52.381 0.00 0.00 43.58 3.01
291 292 1.570813 CCATGAACGCTATCGCAGAA 58.429 50.000 0.00 0.00 43.58 3.02
292 293 0.875908 GCCATGAACGCTATCGCAGA 60.876 55.000 0.00 0.00 45.75 4.26
293 294 1.566563 GCCATGAACGCTATCGCAG 59.433 57.895 0.00 0.00 39.84 5.18
294 295 2.237066 CGCCATGAACGCTATCGCA 61.237 57.895 0.00 0.00 39.84 5.10
295 296 2.546321 CGCCATGAACGCTATCGC 59.454 61.111 0.00 0.00 39.84 4.58
296 297 1.278172 CTCCGCCATGAACGCTATCG 61.278 60.000 0.00 0.00 42.43 2.92
297 298 0.032130 TCTCCGCCATGAACGCTATC 59.968 55.000 0.00 0.00 0.00 2.08
298 299 0.681733 ATCTCCGCCATGAACGCTAT 59.318 50.000 0.00 0.00 0.00 2.97
299 300 1.269723 CTATCTCCGCCATGAACGCTA 59.730 52.381 0.00 0.00 0.00 4.26
300 301 0.032678 CTATCTCCGCCATGAACGCT 59.967 55.000 0.00 0.00 0.00 5.07
301 302 1.560860 GCTATCTCCGCCATGAACGC 61.561 60.000 0.00 0.00 0.00 4.84
302 303 0.249447 TGCTATCTCCGCCATGAACG 60.249 55.000 0.00 0.00 0.00 3.95
303 304 1.506493 CTGCTATCTCCGCCATGAAC 58.494 55.000 0.00 0.00 0.00 3.18
304 305 0.394192 CCTGCTATCTCCGCCATGAA 59.606 55.000 0.00 0.00 0.00 2.57
305 306 0.469892 TCCTGCTATCTCCGCCATGA 60.470 55.000 0.00 0.00 0.00 3.07
306 307 0.037512 CTCCTGCTATCTCCGCCATG 60.038 60.000 0.00 0.00 0.00 3.66
307 308 1.190833 CCTCCTGCTATCTCCGCCAT 61.191 60.000 0.00 0.00 0.00 4.40
308 309 1.834378 CCTCCTGCTATCTCCGCCA 60.834 63.158 0.00 0.00 0.00 5.69
309 310 1.403687 AACCTCCTGCTATCTCCGCC 61.404 60.000 0.00 0.00 0.00 6.13
310 311 1.271102 CTAACCTCCTGCTATCTCCGC 59.729 57.143 0.00 0.00 0.00 5.54
311 312 2.817258 CTCTAACCTCCTGCTATCTCCG 59.183 54.545 0.00 0.00 0.00 4.63
312 313 3.824443 GTCTCTAACCTCCTGCTATCTCC 59.176 52.174 0.00 0.00 0.00 3.71
313 314 3.500680 CGTCTCTAACCTCCTGCTATCTC 59.499 52.174 0.00 0.00 0.00 2.75
314 315 3.136809 TCGTCTCTAACCTCCTGCTATCT 59.863 47.826 0.00 0.00 0.00 1.98
315 316 3.478509 TCGTCTCTAACCTCCTGCTATC 58.521 50.000 0.00 0.00 0.00 2.08
316 317 3.579534 TCGTCTCTAACCTCCTGCTAT 57.420 47.619 0.00 0.00 0.00 2.97
317 318 3.054582 TCTTCGTCTCTAACCTCCTGCTA 60.055 47.826 0.00 0.00 0.00 3.49
318 319 2.096248 CTTCGTCTCTAACCTCCTGCT 58.904 52.381 0.00 0.00 0.00 4.24
319 320 2.093106 TCTTCGTCTCTAACCTCCTGC 58.907 52.381 0.00 0.00 0.00 4.85
320 321 4.011023 TCTTCTTCGTCTCTAACCTCCTG 58.989 47.826 0.00 0.00 0.00 3.86
321 322 4.019141 TCTCTTCTTCGTCTCTAACCTCCT 60.019 45.833 0.00 0.00 0.00 3.69
322 323 4.263435 TCTCTTCTTCGTCTCTAACCTCC 58.737 47.826 0.00 0.00 0.00 4.30
323 324 5.883503 TTCTCTTCTTCGTCTCTAACCTC 57.116 43.478 0.00 0.00 0.00 3.85
324 325 5.065474 CGATTCTCTTCTTCGTCTCTAACCT 59.935 44.000 0.00 0.00 0.00 3.50
325 326 5.267776 CGATTCTCTTCTTCGTCTCTAACC 58.732 45.833 0.00 0.00 0.00 2.85
326 327 4.731480 GCGATTCTCTTCTTCGTCTCTAAC 59.269 45.833 0.00 0.00 35.40 2.34
327 328 4.494362 CGCGATTCTCTTCTTCGTCTCTAA 60.494 45.833 0.00 0.00 35.40 2.10
328 329 3.001431 CGCGATTCTCTTCTTCGTCTCTA 59.999 47.826 0.00 0.00 35.40 2.43
329 330 2.223157 CGCGATTCTCTTCTTCGTCTCT 60.223 50.000 0.00 0.00 35.40 3.10
330 331 2.105659 CGCGATTCTCTTCTTCGTCTC 58.894 52.381 0.00 0.00 35.40 3.36
331 332 1.469308 ACGCGATTCTCTTCTTCGTCT 59.531 47.619 15.93 0.00 35.40 4.18
332 333 1.897641 ACGCGATTCTCTTCTTCGTC 58.102 50.000 15.93 0.00 35.40 4.20
333 334 2.349297 AACGCGATTCTCTTCTTCGT 57.651 45.000 15.93 0.00 35.40 3.85
334 335 2.222596 CCAAACGCGATTCTCTTCTTCG 60.223 50.000 15.93 0.00 36.02 3.79
335 336 2.094417 CCCAAACGCGATTCTCTTCTTC 59.906 50.000 15.93 0.00 0.00 2.87
336 337 2.076863 CCCAAACGCGATTCTCTTCTT 58.923 47.619 15.93 0.00 0.00 2.52
337 338 1.676014 CCCCAAACGCGATTCTCTTCT 60.676 52.381 15.93 0.00 0.00 2.85
338 339 0.727398 CCCCAAACGCGATTCTCTTC 59.273 55.000 15.93 0.00 0.00 2.87
339 340 0.323629 TCCCCAAACGCGATTCTCTT 59.676 50.000 15.93 0.00 0.00 2.85
340 341 0.323629 TTCCCCAAACGCGATTCTCT 59.676 50.000 15.93 0.00 0.00 3.10
341 342 0.727398 CTTCCCCAAACGCGATTCTC 59.273 55.000 15.93 0.00 0.00 2.87
342 343 0.323629 TCTTCCCCAAACGCGATTCT 59.676 50.000 15.93 0.00 0.00 2.40
343 344 1.130561 CTTCTTCCCCAAACGCGATTC 59.869 52.381 15.93 0.00 0.00 2.52
344 345 1.165270 CTTCTTCCCCAAACGCGATT 58.835 50.000 15.93 3.59 0.00 3.34
345 346 0.323629 TCTTCTTCCCCAAACGCGAT 59.676 50.000 15.93 0.00 0.00 4.58
346 347 0.320421 CTCTTCTTCCCCAAACGCGA 60.320 55.000 15.93 0.00 0.00 5.87
347 348 0.320421 TCTCTTCTTCCCCAAACGCG 60.320 55.000 3.53 3.53 0.00 6.01
348 349 1.892209 TTCTCTTCTTCCCCAAACGC 58.108 50.000 0.00 0.00 0.00 4.84
349 350 2.223377 CGTTTCTCTTCTTCCCCAAACG 59.777 50.000 0.00 0.00 39.85 3.60
350 351 3.473625 TCGTTTCTCTTCTTCCCCAAAC 58.526 45.455 0.00 0.00 0.00 2.93
351 352 3.135895 ACTCGTTTCTCTTCTTCCCCAAA 59.864 43.478 0.00 0.00 0.00 3.28
352 353 2.704065 ACTCGTTTCTCTTCTTCCCCAA 59.296 45.455 0.00 0.00 0.00 4.12
353 354 2.037251 CACTCGTTTCTCTTCTTCCCCA 59.963 50.000 0.00 0.00 0.00 4.96
354 355 2.613223 CCACTCGTTTCTCTTCTTCCCC 60.613 54.545 0.00 0.00 0.00 4.81
355 356 2.037381 ACCACTCGTTTCTCTTCTTCCC 59.963 50.000 0.00 0.00 0.00 3.97
356 357 3.388345 ACCACTCGTTTCTCTTCTTCC 57.612 47.619 0.00 0.00 0.00 3.46
357 358 4.025647 CACAACCACTCGTTTCTCTTCTTC 60.026 45.833 0.00 0.00 29.93 2.87
358 359 3.871594 CACAACCACTCGTTTCTCTTCTT 59.128 43.478 0.00 0.00 29.93 2.52
359 360 3.458189 CACAACCACTCGTTTCTCTTCT 58.542 45.455 0.00 0.00 29.93 2.85
360 361 2.544267 CCACAACCACTCGTTTCTCTTC 59.456 50.000 0.00 0.00 29.93 2.87
361 362 2.561569 CCACAACCACTCGTTTCTCTT 58.438 47.619 0.00 0.00 29.93 2.85
362 363 1.810412 GCCACAACCACTCGTTTCTCT 60.810 52.381 0.00 0.00 29.93 3.10
363 364 0.586802 GCCACAACCACTCGTTTCTC 59.413 55.000 0.00 0.00 29.93 2.87
364 365 0.180406 AGCCACAACCACTCGTTTCT 59.820 50.000 0.00 0.00 29.93 2.52
365 366 0.586802 GAGCCACAACCACTCGTTTC 59.413 55.000 0.00 0.00 29.93 2.78
366 367 0.107410 TGAGCCACAACCACTCGTTT 60.107 50.000 0.00 0.00 32.98 3.60
367 368 0.814010 GTGAGCCACAACCACTCGTT 60.814 55.000 1.01 0.00 34.08 3.85
368 369 1.227556 GTGAGCCACAACCACTCGT 60.228 57.895 1.01 0.00 34.08 4.18
369 370 1.961277 GGTGAGCCACAACCACTCG 60.961 63.158 7.49 0.00 35.86 4.18
370 371 1.961277 CGGTGAGCCACAACCACTC 60.961 63.158 7.49 0.00 35.86 3.51
371 372 2.111043 CGGTGAGCCACAACCACT 59.889 61.111 7.49 0.00 35.86 4.00
372 373 3.660111 GCGGTGAGCCACAACCAC 61.660 66.667 7.49 0.00 40.81 4.16
381 382 3.503363 GACCAGCATGCGGTGAGC 61.503 66.667 30.08 16.91 43.56 4.26
382 383 1.364626 GAAGACCAGCATGCGGTGAG 61.365 60.000 30.08 13.51 43.56 3.51
383 384 1.375908 GAAGACCAGCATGCGGTGA 60.376 57.895 30.08 0.00 43.56 4.02
384 385 2.401766 GGAAGACCAGCATGCGGTG 61.402 63.158 30.08 17.38 36.69 4.94
385 386 2.045926 GGAAGACCAGCATGCGGT 60.046 61.111 26.88 26.88 40.30 5.68
386 387 2.046023 TGGAAGACCAGCATGCGG 60.046 61.111 21.83 21.83 41.77 5.69
394 395 1.839994 CCTTATCTGCCTGGAAGACCA 59.160 52.381 6.51 0.00 44.76 4.02
395 396 1.840635 ACCTTATCTGCCTGGAAGACC 59.159 52.381 6.51 0.00 34.07 3.85
396 397 3.274288 CAACCTTATCTGCCTGGAAGAC 58.726 50.000 6.51 0.00 34.07 3.01
397 398 2.239654 CCAACCTTATCTGCCTGGAAGA 59.760 50.000 6.90 6.90 34.07 2.87
398 399 2.239654 TCCAACCTTATCTGCCTGGAAG 59.760 50.000 0.00 0.00 30.12 3.46
399 400 2.274542 TCCAACCTTATCTGCCTGGAA 58.725 47.619 0.00 0.00 30.12 3.53
400 401 1.965414 TCCAACCTTATCTGCCTGGA 58.035 50.000 0.00 0.00 0.00 3.86
401 402 2.025887 ACTTCCAACCTTATCTGCCTGG 60.026 50.000 0.00 0.00 0.00 4.45
402 403 3.356529 ACTTCCAACCTTATCTGCCTG 57.643 47.619 0.00 0.00 0.00 4.85
403 404 3.562176 CCAACTTCCAACCTTATCTGCCT 60.562 47.826 0.00 0.00 0.00 4.75
404 405 2.755103 CCAACTTCCAACCTTATCTGCC 59.245 50.000 0.00 0.00 0.00 4.85
405 406 3.191371 CACCAACTTCCAACCTTATCTGC 59.809 47.826 0.00 0.00 0.00 4.26
406 407 3.758554 CCACCAACTTCCAACCTTATCTG 59.241 47.826 0.00 0.00 0.00 2.90
407 408 3.245264 CCCACCAACTTCCAACCTTATCT 60.245 47.826 0.00 0.00 0.00 1.98
408 409 3.089284 CCCACCAACTTCCAACCTTATC 58.911 50.000 0.00 0.00 0.00 1.75
409 410 2.821625 GCCCACCAACTTCCAACCTTAT 60.822 50.000 0.00 0.00 0.00 1.73
410 411 1.479757 GCCCACCAACTTCCAACCTTA 60.480 52.381 0.00 0.00 0.00 2.69
411 412 0.759060 GCCCACCAACTTCCAACCTT 60.759 55.000 0.00 0.00 0.00 3.50
412 413 1.152546 GCCCACCAACTTCCAACCT 60.153 57.895 0.00 0.00 0.00 3.50
413 414 2.207229 GGCCCACCAACTTCCAACC 61.207 63.158 0.00 0.00 35.26 3.77
414 415 2.207229 GGGCCCACCAACTTCCAAC 61.207 63.158 19.95 0.00 39.85 3.77
415 416 2.200092 GGGCCCACCAACTTCCAA 59.800 61.111 19.95 0.00 39.85 3.53
416 417 4.278513 CGGGCCCACCAACTTCCA 62.279 66.667 24.92 0.00 40.22 3.53
417 418 3.282374 ATCGGGCCCACCAACTTCC 62.282 63.158 24.92 0.00 40.22 3.46
418 419 2.046285 CATCGGGCCCACCAACTTC 61.046 63.158 24.92 0.00 40.22 3.01
419 420 2.035626 CATCGGGCCCACCAACTT 59.964 61.111 24.92 0.00 40.22 2.66
420 421 2.933287 TCATCGGGCCCACCAACT 60.933 61.111 24.92 0.00 40.22 3.16
421 422 2.438434 CTCATCGGGCCCACCAAC 60.438 66.667 24.92 0.00 40.22 3.77
422 423 2.227757 TTCTCATCGGGCCCACCAA 61.228 57.895 24.92 3.76 40.22 3.67
423 424 2.609299 TTCTCATCGGGCCCACCA 60.609 61.111 24.92 4.78 40.22 4.17
424 425 2.124695 GTTCTCATCGGGCCCACC 60.125 66.667 24.92 0.00 0.00 4.61
425 426 2.511600 CGTTCTCATCGGGCCCAC 60.512 66.667 24.92 9.56 0.00 4.61
426 427 3.000819 ACGTTCTCATCGGGCCCA 61.001 61.111 24.92 9.77 0.00 5.36
427 428 2.511600 CACGTTCTCATCGGGCCC 60.512 66.667 13.57 13.57 0.00 5.80
428 429 2.511600 CCACGTTCTCATCGGGCC 60.512 66.667 0.00 0.00 0.00 5.80
429 430 1.375523 AACCACGTTCTCATCGGGC 60.376 57.895 0.00 0.00 0.00 6.13
430 431 0.320421 ACAACCACGTTCTCATCGGG 60.320 55.000 0.00 0.00 0.00 5.14
431 432 0.790207 CACAACCACGTTCTCATCGG 59.210 55.000 0.00 0.00 0.00 4.18
432 433 0.163788 GCACAACCACGTTCTCATCG 59.836 55.000 0.00 0.00 0.00 3.84
433 434 1.512926 AGCACAACCACGTTCTCATC 58.487 50.000 0.00 0.00 0.00 2.92
434 435 1.873591 GAAGCACAACCACGTTCTCAT 59.126 47.619 0.00 0.00 0.00 2.90
435 436 1.295792 GAAGCACAACCACGTTCTCA 58.704 50.000 0.00 0.00 0.00 3.27
436 437 0.586802 GGAAGCACAACCACGTTCTC 59.413 55.000 0.00 0.00 0.00 2.87
437 438 0.107410 TGGAAGCACAACCACGTTCT 60.107 50.000 0.00 0.00 0.00 3.01
438 439 0.307760 CTGGAAGCACAACCACGTTC 59.692 55.000 0.00 0.00 32.44 3.95
439 440 1.101049 CCTGGAAGCACAACCACGTT 61.101 55.000 0.00 0.00 32.44 3.99
440 441 1.525995 CCTGGAAGCACAACCACGT 60.526 57.895 0.00 0.00 32.44 4.49
441 442 2.908073 GCCTGGAAGCACAACCACG 61.908 63.158 0.00 0.00 32.44 4.94
442 443 2.564721 GGCCTGGAAGCACAACCAC 61.565 63.158 0.00 0.00 32.44 4.16
443 444 2.203480 GGCCTGGAAGCACAACCA 60.203 61.111 0.00 0.00 34.81 3.67
444 445 1.832167 TTGGCCTGGAAGCACAACC 60.832 57.895 3.32 0.00 0.00 3.77
445 446 1.109323 AGTTGGCCTGGAAGCACAAC 61.109 55.000 3.32 4.37 40.87 3.32
446 447 0.823356 GAGTTGGCCTGGAAGCACAA 60.823 55.000 3.32 0.00 0.00 3.33
447 448 1.228245 GAGTTGGCCTGGAAGCACA 60.228 57.895 3.32 0.00 0.00 4.57
448 449 0.610232 ATGAGTTGGCCTGGAAGCAC 60.610 55.000 3.32 0.00 0.00 4.40
449 450 0.609957 CATGAGTTGGCCTGGAAGCA 60.610 55.000 3.32 0.00 0.00 3.91
450 451 1.941999 GCATGAGTTGGCCTGGAAGC 61.942 60.000 3.32 0.00 0.00 3.86
451 452 1.651240 CGCATGAGTTGGCCTGGAAG 61.651 60.000 3.32 0.00 0.00 3.46
452 453 1.675310 CGCATGAGTTGGCCTGGAA 60.675 57.895 3.32 0.00 0.00 3.53
453 454 2.046023 CGCATGAGTTGGCCTGGA 60.046 61.111 3.32 0.00 0.00 3.86
454 455 2.046023 TCGCATGAGTTGGCCTGG 60.046 61.111 3.32 0.00 0.00 4.45
455 456 1.078918 TCTCGCATGAGTTGGCCTG 60.079 57.895 3.32 0.00 43.09 4.85
456 457 1.078848 GTCTCGCATGAGTTGGCCT 60.079 57.895 3.32 0.00 43.09 5.19
457 458 2.109126 GGTCTCGCATGAGTTGGCC 61.109 63.158 0.00 0.00 43.09 5.36
458 459 2.456119 CGGTCTCGCATGAGTTGGC 61.456 63.158 0.00 0.00 43.09 4.52
459 460 3.786101 CGGTCTCGCATGAGTTGG 58.214 61.111 0.00 0.00 43.09 3.77
470 471 2.806856 CTTGCTCGCATGCGGTCTC 61.807 63.158 37.18 23.22 40.25 3.36
471 472 2.816958 CTTGCTCGCATGCGGTCT 60.817 61.111 37.18 0.00 40.25 3.85
472 473 4.527157 GCTTGCTCGCATGCGGTC 62.527 66.667 37.18 27.78 37.36 4.79
474 475 4.824166 GTGCTTGCTCGCATGCGG 62.824 66.667 37.18 27.82 46.08 5.69
482 483 2.158959 ATACGACGCGTGCTTGCTC 61.159 57.895 20.70 0.00 41.39 4.26
483 484 2.126071 ATACGACGCGTGCTTGCT 60.126 55.556 20.70 0.00 41.39 3.91
484 485 1.752501 ATCATACGACGCGTGCTTGC 61.753 55.000 20.70 0.00 41.39 4.01
485 486 0.645355 AATCATACGACGCGTGCTTG 59.355 50.000 20.70 9.21 41.39 4.01
486 487 0.645355 CAATCATACGACGCGTGCTT 59.355 50.000 20.70 2.07 41.39 3.91
487 488 0.179148 TCAATCATACGACGCGTGCT 60.179 50.000 20.70 2.84 41.39 4.40
488 489 0.227234 CTCAATCATACGACGCGTGC 59.773 55.000 20.70 7.65 41.39 5.34
489 490 1.545759 ACTCAATCATACGACGCGTG 58.454 50.000 20.70 12.18 41.39 5.34
490 491 2.182825 GAACTCAATCATACGACGCGT 58.817 47.619 13.85 13.85 44.35 6.01
491 492 1.185121 CGAACTCAATCATACGACGCG 59.815 52.381 3.53 3.53 0.00 6.01
492 493 2.447250 TCGAACTCAATCATACGACGC 58.553 47.619 0.00 0.00 0.00 5.19
493 494 3.664486 GGATCGAACTCAATCATACGACG 59.336 47.826 0.00 0.00 32.93 5.12
494 495 4.607955 TGGATCGAACTCAATCATACGAC 58.392 43.478 0.00 0.00 32.93 4.34
495 496 4.911514 TGGATCGAACTCAATCATACGA 57.088 40.909 0.00 0.00 0.00 3.43
496 497 4.085568 CGTTGGATCGAACTCAATCATACG 60.086 45.833 17.12 0.00 0.00 3.06
497 498 4.318121 GCGTTGGATCGAACTCAATCATAC 60.318 45.833 17.12 0.00 0.00 2.39
498 499 3.802139 GCGTTGGATCGAACTCAATCATA 59.198 43.478 17.12 0.00 0.00 2.15
499 500 2.609459 GCGTTGGATCGAACTCAATCAT 59.391 45.455 17.12 0.00 0.00 2.45
500 501 1.999735 GCGTTGGATCGAACTCAATCA 59.000 47.619 17.12 0.00 0.00 2.57
501 502 1.327764 GGCGTTGGATCGAACTCAATC 59.672 52.381 17.12 3.11 0.00 2.67
502 503 1.066143 AGGCGTTGGATCGAACTCAAT 60.066 47.619 17.12 1.24 0.00 2.57
503 504 0.320374 AGGCGTTGGATCGAACTCAA 59.680 50.000 17.12 0.00 0.00 3.02
504 505 0.108804 GAGGCGTTGGATCGAACTCA 60.109 55.000 17.12 0.00 36.83 3.41
505 506 1.140407 CGAGGCGTTGGATCGAACTC 61.140 60.000 17.12 10.11 38.72 3.01
506 507 1.153823 CGAGGCGTTGGATCGAACT 60.154 57.895 17.12 0.18 38.72 3.01
507 508 2.799540 GCGAGGCGTTGGATCGAAC 61.800 63.158 10.32 10.32 38.72 3.95
508 509 2.508439 GCGAGGCGTTGGATCGAA 60.508 61.111 0.00 0.00 38.72 3.71
520 521 3.103911 GTCAACCACGTCGCGAGG 61.104 66.667 25.84 25.84 42.89 4.63
521 522 3.458579 CGTCAACCACGTCGCGAG 61.459 66.667 10.24 6.53 44.07 5.03
529 530 2.553079 TTTCTTGTTGCGTCAACCAC 57.447 45.000 16.47 0.00 42.96 4.16
530 531 2.685388 TGATTTCTTGTTGCGTCAACCA 59.315 40.909 16.47 7.86 42.96 3.67
531 532 3.243068 ACTGATTTCTTGTTGCGTCAACC 60.243 43.478 16.47 4.11 42.96 3.77
532 533 3.952535 ACTGATTTCTTGTTGCGTCAAC 58.047 40.909 13.54 13.54 43.78 3.18
533 534 3.303066 CGACTGATTTCTTGTTGCGTCAA 60.303 43.478 0.00 0.00 0.00 3.18
534 535 2.220824 CGACTGATTTCTTGTTGCGTCA 59.779 45.455 0.00 0.00 0.00 4.35
535 536 2.411547 CCGACTGATTTCTTGTTGCGTC 60.412 50.000 0.00 0.00 0.00 5.19
536 537 1.531149 CCGACTGATTTCTTGTTGCGT 59.469 47.619 0.00 0.00 0.00 5.24
537 538 1.531149 ACCGACTGATTTCTTGTTGCG 59.469 47.619 0.00 0.00 0.00 4.85
538 539 2.808543 AGACCGACTGATTTCTTGTTGC 59.191 45.455 0.00 0.00 0.00 4.17
539 540 5.696724 ACTTAGACCGACTGATTTCTTGTTG 59.303 40.000 0.00 0.00 0.00 3.33
540 541 5.855045 ACTTAGACCGACTGATTTCTTGTT 58.145 37.500 0.00 0.00 0.00 2.83
541 542 5.470047 ACTTAGACCGACTGATTTCTTGT 57.530 39.130 0.00 0.00 0.00 3.16
542 543 7.884816 TTAACTTAGACCGACTGATTTCTTG 57.115 36.000 0.00 0.00 0.00 3.02
543 544 7.929785 TGTTTAACTTAGACCGACTGATTTCTT 59.070 33.333 0.00 0.00 0.00 2.52
544 545 7.439381 TGTTTAACTTAGACCGACTGATTTCT 58.561 34.615 0.00 0.00 0.00 2.52
545 546 7.647907 TGTTTAACTTAGACCGACTGATTTC 57.352 36.000 0.00 0.00 0.00 2.17
546 547 8.617290 AATGTTTAACTTAGACCGACTGATTT 57.383 30.769 0.00 0.00 0.00 2.17
547 548 8.617290 AAATGTTTAACTTAGACCGACTGATT 57.383 30.769 0.00 0.00 0.00 2.57
548 549 8.617290 AAAATGTTTAACTTAGACCGACTGAT 57.383 30.769 0.00 0.00 0.00 2.90
549 550 7.172019 GGAAAATGTTTAACTTAGACCGACTGA 59.828 37.037 0.00 0.00 0.00 3.41
550 551 7.041644 TGGAAAATGTTTAACTTAGACCGACTG 60.042 37.037 0.00 0.00 0.00 3.51
551 552 6.993902 TGGAAAATGTTTAACTTAGACCGACT 59.006 34.615 0.00 0.00 0.00 4.18
552 553 7.193377 TGGAAAATGTTTAACTTAGACCGAC 57.807 36.000 0.00 0.00 0.00 4.79
553 554 7.989416 ATGGAAAATGTTTAACTTAGACCGA 57.011 32.000 0.00 0.00 0.00 4.69
554 555 9.471084 AAAATGGAAAATGTTTAACTTAGACCG 57.529 29.630 0.00 0.00 0.00 4.79
575 576 2.758736 TTCCGGCCCATTTGAAAATG 57.241 45.000 8.51 8.51 44.12 2.32
578 579 3.778954 AAAATTCCGGCCCATTTGAAA 57.221 38.095 0.00 0.00 0.00 2.69
596 597 8.171164 ACAAAATTCTGGTCCAAAAACAAAAA 57.829 26.923 0.00 0.00 0.00 1.94
600 601 7.751768 AAAACAAAATTCTGGTCCAAAAACA 57.248 28.000 0.00 0.00 0.00 2.83
658 659 9.057089 GTATTCTCTACGGATCCATGAATTTTT 57.943 33.333 13.41 0.00 0.00 1.94
661 662 7.303182 TGTATTCTCTACGGATCCATGAATT 57.697 36.000 13.41 2.34 0.00 2.17
663 664 6.918067 ATGTATTCTCTACGGATCCATGAA 57.082 37.500 13.41 8.24 0.00 2.57
749 750 3.454082 ACCATGGTGCCTTTTCTTGAAAA 59.546 39.130 18.99 8.07 0.00 2.29
753 754 2.443887 CACCATGGTGCCTTTTCTTG 57.556 50.000 31.13 4.54 39.39 3.02
838 848 5.128991 ACCTTAATAGAGGCCTGTACAGTTC 59.871 44.000 21.18 14.80 40.65 3.01
839 849 5.030820 ACCTTAATAGAGGCCTGTACAGTT 58.969 41.667 21.18 4.52 40.65 3.16
840 850 4.406003 CACCTTAATAGAGGCCTGTACAGT 59.594 45.833 21.18 1.97 40.65 3.55
841 851 4.740934 GCACCTTAATAGAGGCCTGTACAG 60.741 50.000 12.00 16.34 40.65 2.74
842 852 3.134081 GCACCTTAATAGAGGCCTGTACA 59.866 47.826 12.00 0.00 40.65 2.90
843 853 3.494573 GGCACCTTAATAGAGGCCTGTAC 60.495 52.174 12.00 0.00 40.65 2.90
844 854 2.704065 GGCACCTTAATAGAGGCCTGTA 59.296 50.000 12.00 12.45 40.65 2.74
845 855 1.490910 GGCACCTTAATAGAGGCCTGT 59.509 52.381 12.00 9.69 40.65 4.00
846 856 1.771255 AGGCACCTTAATAGAGGCCTG 59.229 52.381 12.00 0.00 44.15 4.85
847 857 2.050918 GAGGCACCTTAATAGAGGCCT 58.949 52.381 3.86 3.86 46.64 5.19
848 858 1.270358 CGAGGCACCTTAATAGAGGCC 60.270 57.143 0.00 0.00 40.65 5.19
849 859 1.874320 GCGAGGCACCTTAATAGAGGC 60.874 57.143 0.00 0.00 40.65 4.70
850 860 1.689273 AGCGAGGCACCTTAATAGAGG 59.311 52.381 0.00 0.00 42.75 3.69
851 861 2.546795 CCAGCGAGGCACCTTAATAGAG 60.547 54.545 0.00 0.00 0.00 2.43
852 862 1.412710 CCAGCGAGGCACCTTAATAGA 59.587 52.381 0.00 0.00 0.00 1.98
853 863 1.412710 TCCAGCGAGGCACCTTAATAG 59.587 52.381 0.00 0.00 37.29 1.73
854 864 1.412710 CTCCAGCGAGGCACCTTAATA 59.587 52.381 0.00 0.00 37.29 0.98
855 865 0.179000 CTCCAGCGAGGCACCTTAAT 59.821 55.000 0.00 0.00 37.29 1.40
856 866 1.596934 CTCCAGCGAGGCACCTTAA 59.403 57.895 0.00 0.00 37.29 1.85
857 867 3.298958 CTCCAGCGAGGCACCTTA 58.701 61.111 0.00 0.00 37.29 2.69
916 932 0.603707 CGAGTGAAGGGCAAAGCTGA 60.604 55.000 0.00 0.00 0.00 4.26
922 938 2.281484 GTGGCGAGTGAAGGGCAA 60.281 61.111 0.00 0.00 40.61 4.52
926 942 2.743928 GGCAGTGGCGAGTGAAGG 60.744 66.667 7.85 0.00 42.47 3.46
1095 1114 4.162690 GAGATGAGGCCGGCGGTT 62.163 66.667 28.82 16.57 0.00 4.44
1350 1369 0.836400 GGAAGGTGAGGTGGTCTGGA 60.836 60.000 0.00 0.00 0.00 3.86
1353 1372 1.539124 GGGGAAGGTGAGGTGGTCT 60.539 63.158 0.00 0.00 0.00 3.85
1416 1435 1.374758 GTGCCCCAGAACAGAGTCG 60.375 63.158 0.00 0.00 0.00 4.18
1420 1439 1.407656 AAGACGTGCCCCAGAACAGA 61.408 55.000 0.00 0.00 0.00 3.41
1425 1444 2.583441 CCTGAAGACGTGCCCCAGA 61.583 63.158 0.00 0.00 0.00 3.86
1428 1447 3.959991 GAGCCTGAAGACGTGCCCC 62.960 68.421 0.00 0.00 0.00 5.80
1544 1780 2.430694 CACGATACCAGATCCCTGACAA 59.569 50.000 0.00 0.00 43.02 3.18
1548 1784 1.704641 TCCACGATACCAGATCCCTG 58.295 55.000 0.00 0.00 40.09 4.45
1605 1841 4.016706 AACTCCAACGCCTCCCCG 62.017 66.667 0.00 0.00 0.00 5.73
1614 1850 2.930826 TCCTCCAGAACAACTCCAAC 57.069 50.000 0.00 0.00 0.00 3.77
1621 1857 1.280133 CTCTGCCATCCTCCAGAACAA 59.720 52.381 0.00 0.00 37.61 2.83
1662 1898 0.541392 CCCCAATCATCGTCACCTCA 59.459 55.000 0.00 0.00 0.00 3.86
1695 1931 3.329889 AGATCCCGCAGTTGCCCA 61.330 61.111 0.00 0.00 37.91 5.36
1701 1937 1.992277 AAGCTCCAGATCCCGCAGT 60.992 57.895 0.00 0.00 0.00 4.40
1735 1971 5.241728 TCACTCCATTACTCTCCACATATCG 59.758 44.000 0.00 0.00 0.00 2.92
1809 2045 2.361104 GCCCGCTCCAAATCACCA 60.361 61.111 0.00 0.00 0.00 4.17
1812 2048 1.678635 CTTGGCCCGCTCCAAATCA 60.679 57.895 0.00 0.00 44.73 2.57
1906 2142 0.103026 CTCCTCGCATCGTCCATCAA 59.897 55.000 0.00 0.00 0.00 2.57
1980 2216 3.073678 CTGCTTACACTGCACATAACCA 58.926 45.455 0.00 0.00 36.37 3.67
2019 2255 5.517904 GCTTCCTGCATCTCATGAAATAAC 58.482 41.667 0.00 0.00 42.31 1.89
2160 2396 4.997395 AGATTTGTGCCTAGTGTAACACTG 59.003 41.667 0.00 0.00 45.01 3.66
2245 2481 0.794605 GTGAGCGCATTTTTCTCCGC 60.795 55.000 11.47 0.00 46.14 5.54
2278 2514 2.479389 CGTGATTTGCCAAACCGCATAT 60.479 45.455 0.00 0.00 38.87 1.78
2286 2522 2.709170 ACGTCCGTGATTTGCCAAA 58.291 47.368 0.00 0.00 0.00 3.28
2287 2523 4.466133 ACGTCCGTGATTTGCCAA 57.534 50.000 0.00 0.00 0.00 4.52
2298 2534 2.887568 GCCTCATCAGCACGTCCG 60.888 66.667 0.00 0.00 0.00 4.79
2437 2673 8.134202 TCAAGATGATACTTTGAGACCAGTAA 57.866 34.615 0.00 0.00 0.00 2.24
2451 2687 8.950210 TGTTTCATTTTCCTCTCAAGATGATAC 58.050 33.333 0.00 0.00 0.00 2.24
2509 2745 5.682234 TCTGCTTCATCTAAATGACCTGA 57.318 39.130 0.00 0.00 41.62 3.86
2620 2856 0.471591 ATTGCTGCCCTTTCACCCAA 60.472 50.000 0.00 0.00 0.00 4.12
2904 3140 7.332430 CAACCAGTTGCATAAATGTCAATCATT 59.668 33.333 0.00 0.00 39.72 2.57
3116 3352 6.151817 ACCTTTTGAATTGAGATACTGCCTTC 59.848 38.462 0.00 0.00 0.00 3.46
3185 3430 1.753073 GCAGCTAAGCACCAATCCAAT 59.247 47.619 0.00 0.00 0.00 3.16
3397 3643 8.143193 TGTATTTGACAGAGTCATTTGCAAAAT 58.857 29.630 17.19 2.54 42.40 1.82
3411 3664 6.150976 GTCCATTTGGTGATGTATTTGACAGA 59.849 38.462 0.00 0.00 37.76 3.41
3412 3665 6.324819 GTCCATTTGGTGATGTATTTGACAG 58.675 40.000 0.00 0.00 37.76 3.51
3469 3726 3.990318 ACAGTGCTCTTTTGGTTTAGC 57.010 42.857 0.00 0.00 35.51 3.09
3590 3848 8.511604 TTCTGTTTTATCCCTCTTGATGAATC 57.488 34.615 0.00 0.00 0.00 2.52
3640 3899 5.865013 GCTACTTTTCCAGACTCTAAGTGAC 59.135 44.000 0.00 0.00 31.94 3.67
3660 3920 3.704061 AGGTTCAGGAGAAGAGATGCTAC 59.296 47.826 0.00 0.00 33.63 3.58
3677 3937 2.102588 TCGGCTTAATGGCTAGAGGTTC 59.897 50.000 0.00 0.00 39.32 3.62
3678 3938 2.116238 TCGGCTTAATGGCTAGAGGTT 58.884 47.619 0.00 0.00 39.32 3.50
3721 3981 2.472695 TGGACCACGAAGATTTCCTG 57.527 50.000 0.00 0.00 0.00 3.86
3794 4055 3.228188 TGGCTGAATACAATGGGATCC 57.772 47.619 1.92 1.92 0.00 3.36
3798 4059 3.025978 ACACATGGCTGAATACAATGGG 58.974 45.455 0.00 0.00 0.00 4.00
3820 4081 8.497554 GCATAAATGTTTTTGCTGATTCTTTCA 58.502 29.630 11.86 0.00 40.45 2.69
3888 4150 9.844790 CATATGGCATAACATGTTTTTCGATAT 57.155 29.630 17.78 12.29 32.39 1.63
3893 4155 6.047870 TGGCATATGGCATAACATGTTTTTC 58.952 36.000 26.67 3.06 46.12 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.