Multiple sequence alignment - TraesCS7B01G300900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G300900 chr7B 100.000 3014 0 0 1 3014 538052012 538048999 0.000000e+00 5566.0
1 TraesCS7B01G300900 chr7B 83.626 171 26 2 2422 2590 566150115 566149945 3.110000e-35 159.0
2 TraesCS7B01G300900 chr7B 96.491 57 2 0 2958 3014 268320025 268320081 8.900000e-16 95.3
3 TraesCS7B01G300900 chr7B 91.304 69 3 3 2051 2119 622300474 622300409 1.150000e-14 91.6
4 TraesCS7B01G300900 chr7A 93.127 873 37 10 831 1681 580630075 580629204 0.000000e+00 1258.0
5 TraesCS7B01G300900 chr7A 93.994 333 20 0 1681 2013 580628928 580628596 3.470000e-139 505.0
6 TraesCS7B01G300900 chr7A 92.775 346 19 3 4 343 580631823 580631478 2.090000e-136 496.0
7 TraesCS7B01G300900 chr7A 85.931 462 35 10 340 775 580631448 580630991 1.640000e-127 466.0
8 TraesCS7B01G300900 chr7A 74.747 594 92 33 2251 2829 233341603 233341053 2.350000e-51 213.0
9 TraesCS7B01G300900 chr7A 76.699 412 54 24 2243 2650 639295528 639295155 1.100000e-44 191.0
10 TraesCS7B01G300900 chr7A 75.862 406 56 23 2251 2652 686230666 686231033 5.170000e-38 169.0
11 TraesCS7B01G300900 chr6A 87.618 743 60 11 2252 2964 85253387 85254127 0.000000e+00 833.0
12 TraesCS7B01G300900 chr6A 89.338 272 29 0 23 294 40299839 40300110 2.880000e-90 342.0
13 TraesCS7B01G300900 chr6A 76.296 405 56 22 2251 2652 224249755 224249388 2.390000e-41 180.0
14 TraesCS7B01G300900 chr1A 86.207 725 77 14 2254 2962 535686548 535687265 0.000000e+00 763.0
15 TraesCS7B01G300900 chr3D 90.877 570 41 5 2403 2964 38613180 38612614 0.000000e+00 754.0
16 TraesCS7B01G300900 chr5B 85.040 742 81 13 2252 2964 192178706 192179446 0.000000e+00 728.0
17 TraesCS7B01G300900 chr5B 82.310 554 74 17 1149 1681 699394381 699394931 2.740000e-125 459.0
18 TraesCS7B01G300900 chr5B 82.246 552 75 17 1149 1681 703506779 703507326 3.540000e-124 455.0
19 TraesCS7B01G300900 chr7D 95.294 340 16 0 4 343 509630685 509630346 9.510000e-150 540.0
20 TraesCS7B01G300900 chr7D 93.732 351 19 1 1334 1681 509628432 509628082 9.570000e-145 523.0
21 TraesCS7B01G300900 chr7D 92.988 328 23 0 1681 2008 509626016 509625689 2.100000e-131 479.0
22 TraesCS7B01G300900 chr7D 84.351 262 16 10 340 584 509630316 509630063 1.810000e-57 233.0
23 TraesCS7B01G300900 chr7D 87.437 199 14 5 830 1019 509628623 509628427 5.060000e-53 219.0
24 TraesCS7B01G300900 chr7D 85.784 204 21 4 615 813 509628868 509628668 3.040000e-50 209.0
25 TraesCS7B01G300900 chr7D 93.651 63 3 1 2047 2109 477388085 477388024 3.200000e-15 93.5
26 TraesCS7B01G300900 chr6D 87.037 432 40 8 2250 2668 454742709 454743137 9.780000e-130 473.0
27 TraesCS7B01G300900 chr6D 92.473 279 20 1 2686 2964 454744797 454745074 6.050000e-107 398.0
28 TraesCS7B01G300900 chr6D 90.809 272 25 0 23 294 36254535 36254806 6.140000e-97 364.0
29 TraesCS7B01G300900 chr6D 80.097 206 30 11 2394 2593 365733610 365733810 3.130000e-30 143.0
30 TraesCS7B01G300900 chr6D 100.000 50 0 0 2965 3014 38277078 38277029 3.200000e-15 93.5
31 TraesCS7B01G300900 chr6D 100.000 50 0 0 2965 3014 285381978 285381929 3.200000e-15 93.5
32 TraesCS7B01G300900 chr6D 100.000 50 0 0 2965 3014 439002511 439002560 3.200000e-15 93.5
33 TraesCS7B01G300900 chr6D 92.308 65 4 1 2047 2111 227487998 227488061 1.150000e-14 91.6
34 TraesCS7B01G300900 chr6D 93.548 62 3 1 2047 2108 450262732 450262792 1.150000e-14 91.6
35 TraesCS7B01G300900 chr6D 89.041 73 5 3 2047 2119 14268372 14268441 1.490000e-13 87.9
36 TraesCS7B01G300900 chr6D 98.039 51 0 1 2965 3014 332196394 332196344 1.490000e-13 87.9
37 TraesCS7B01G300900 chr5D 82.765 557 71 14 1148 1681 551093629 551094183 9.780000e-130 473.0
38 TraesCS7B01G300900 chr5D 89.860 286 28 1 18 302 406417285 406417570 1.710000e-97 366.0
39 TraesCS7B01G300900 chr5D 82.063 223 30 7 1163 1377 410346740 410346960 6.640000e-42 182.0
40 TraesCS7B01G300900 chr5D 100.000 50 0 0 2965 3014 226564156 226564205 3.200000e-15 93.5
41 TraesCS7B01G300900 chr5D 100.000 50 0 0 2965 3014 519052015 519051966 3.200000e-15 93.5
42 TraesCS7B01G300900 chr5D 92.308 65 4 1 2047 2111 547541741 547541804 1.150000e-14 91.6
43 TraesCS7B01G300900 chr5A 89.860 286 28 1 18 302 512061392 512061677 1.710000e-97 366.0
44 TraesCS7B01G300900 chr5A 83.857 223 26 8 1163 1377 521768588 521768808 1.420000e-48 204.0
45 TraesCS7B01G300900 chr6B 90.074 272 27 0 23 294 75943409 75943680 1.330000e-93 353.0
46 TraesCS7B01G300900 chr1D 88.476 269 31 0 26 294 440720280 440720548 2.900000e-85 326.0
47 TraesCS7B01G300900 chr1D 78.788 363 54 14 2256 2597 461301285 461301645 3.910000e-54 222.0
48 TraesCS7B01G300900 chr1D 100.000 50 0 0 2965 3014 348585805 348585854 3.200000e-15 93.5
49 TraesCS7B01G300900 chr1B 88.104 269 32 0 26 294 598192502 598192770 1.350000e-83 320.0
50 TraesCS7B01G300900 chr1B 82.828 198 30 4 1148 1343 20712002 20712197 1.110000e-39 174.0
51 TraesCS7B01G300900 chr2D 75.816 521 78 19 1167 1681 613127951 613127473 1.410000e-53 220.0
52 TraesCS7B01G300900 chr2D 82.000 200 25 11 2400 2593 503572606 503572412 3.110000e-35 159.0
53 TraesCS7B01G300900 chrUn 85.621 153 21 1 2447 2599 88794154 88794003 3.110000e-35 159.0
54 TraesCS7B01G300900 chr2A 91.304 69 5 1 2047 2115 71627267 71627334 3.200000e-15 93.5
55 TraesCS7B01G300900 chr3B 90.000 70 5 2 2042 2111 674421144 674421077 4.140000e-14 89.8
56 TraesCS7B01G300900 chr3B 92.188 64 1 4 2955 3014 539369796 539369733 1.490000e-13 87.9
57 TraesCS7B01G300900 chr3A 91.667 60 3 2 2047 2105 14856550 14856608 6.930000e-12 82.4
58 TraesCS7B01G300900 chr3A 88.000 50 3 3 2253 2300 229183582 229183534 4.200000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G300900 chr7B 538048999 538052012 3013 True 5566.000000 5566 100.00000 1 3014 1 chr7B.!!$R1 3013
1 TraesCS7B01G300900 chr7A 580628596 580631823 3227 True 681.250000 1258 91.45675 4 2013 4 chr7A.!!$R3 2009
2 TraesCS7B01G300900 chr7A 233341053 233341603 550 True 213.000000 213 74.74700 2251 2829 1 chr7A.!!$R1 578
3 TraesCS7B01G300900 chr6A 85253387 85254127 740 False 833.000000 833 87.61800 2252 2964 1 chr6A.!!$F2 712
4 TraesCS7B01G300900 chr1A 535686548 535687265 717 False 763.000000 763 86.20700 2254 2962 1 chr1A.!!$F1 708
5 TraesCS7B01G300900 chr3D 38612614 38613180 566 True 754.000000 754 90.87700 2403 2964 1 chr3D.!!$R1 561
6 TraesCS7B01G300900 chr5B 192178706 192179446 740 False 728.000000 728 85.04000 2252 2964 1 chr5B.!!$F1 712
7 TraesCS7B01G300900 chr5B 699394381 699394931 550 False 459.000000 459 82.31000 1149 1681 1 chr5B.!!$F2 532
8 TraesCS7B01G300900 chr5B 703506779 703507326 547 False 455.000000 455 82.24600 1149 1681 1 chr5B.!!$F3 532
9 TraesCS7B01G300900 chr7D 509625689 509630685 4996 True 367.166667 540 89.93100 4 2008 6 chr7D.!!$R2 2004
10 TraesCS7B01G300900 chr6D 454742709 454745074 2365 False 435.500000 473 89.75500 2250 2964 2 chr6D.!!$F7 714
11 TraesCS7B01G300900 chr5D 551093629 551094183 554 False 473.000000 473 82.76500 1148 1681 1 chr5D.!!$F5 533

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
905 3002 0.238289 AACTTCTCGGCATTGCGTTG 59.762 50.0 1.91 0.0 0.0 4.1 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2155 6389 0.0293 GCAGCGAGCAGACAAAAACA 59.971 50.0 0.0 0.0 44.79 2.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
42 43 0.460284 GTCGTGGGGCACAGACTATG 60.460 60.000 10.76 0.00 36.14 2.23
44 45 0.249120 CGTGGGGCACAGACTATGAA 59.751 55.000 0.00 0.00 33.40 2.57
116 117 0.250234 TCATCTTCTGGAACCTGCGG 59.750 55.000 0.00 0.00 0.00 5.69
122 123 2.203788 TGGAACCTGCGGGACTCT 60.204 61.111 21.41 0.00 36.25 3.24
221 222 1.737008 GAAGAAGGACGGCGTGGTC 60.737 63.158 21.19 11.84 36.18 4.02
452 511 5.390251 CCAGTTCGTTGACTTTGATCATCTG 60.390 44.000 0.00 0.00 0.00 2.90
456 515 3.181513 CGTTGACTTTGATCATCTGCAGG 60.182 47.826 15.13 0.00 0.00 4.85
477 536 3.306019 GGATTCAAAACCAAATCGTGCCT 60.306 43.478 0.00 0.00 33.57 4.75
478 537 2.791383 TCAAAACCAAATCGTGCCTG 57.209 45.000 0.00 0.00 0.00 4.85
515 574 1.174712 ATGCTGCGCTTGAGTTGGTT 61.175 50.000 9.73 0.00 0.00 3.67
530 589 6.785076 TGAGTTGGTTATCATTCTTGGGTAA 58.215 36.000 0.00 0.00 0.00 2.85
546 605 4.721132 TGGGTAAATTTATCCCATCGACC 58.279 43.478 22.21 8.46 45.19 4.79
547 606 4.166337 TGGGTAAATTTATCCCATCGACCA 59.834 41.667 22.21 0.93 45.19 4.02
559 618 2.816087 CCATCGACCAATGAATCATCCC 59.184 50.000 0.00 0.00 0.00 3.85
576 635 1.064463 TCCCTTGGAGTGCATGAATCC 60.064 52.381 0.00 0.06 0.00 3.01
601 662 4.000988 TGGATTTCTAAACTCCGAACAGC 58.999 43.478 0.00 0.00 31.36 4.40
606 667 2.028112 TCTAAACTCCGAACAGCATGCT 60.028 45.455 16.30 16.30 42.53 3.79
622 1845 1.795768 TGCTGTCGTGGAGTTTGATC 58.204 50.000 0.00 0.00 0.00 2.92
641 1870 2.195727 TCAGGGTGCTATGTGAATCCA 58.804 47.619 0.00 0.00 0.00 3.41
647 1876 3.815401 GGTGCTATGTGAATCCATACCAC 59.185 47.826 7.83 7.83 34.96 4.16
694 1924 5.867903 TTCTGAATTCAAAAAGGAAGGCA 57.132 34.783 9.88 0.00 0.00 4.75
777 2841 3.636231 CAACACCTCCCCGCTCCA 61.636 66.667 0.00 0.00 0.00 3.86
781 2845 1.146263 CACCTCCCCGCTCCATAAC 59.854 63.158 0.00 0.00 0.00 1.89
787 2851 1.093496 CCCCGCTCCATAACGAAACC 61.093 60.000 0.00 0.00 0.00 3.27
808 2872 3.713764 CCACTCCCTCTTTAGTGATCCAT 59.286 47.826 4.11 0.00 44.79 3.41
813 2877 5.205821 TCCCTCTTTAGTGATCCATAACGA 58.794 41.667 0.00 0.00 0.00 3.85
814 2878 5.659525 TCCCTCTTTAGTGATCCATAACGAA 59.340 40.000 0.00 0.00 0.00 3.85
815 2879 6.155565 TCCCTCTTTAGTGATCCATAACGAAA 59.844 38.462 0.00 0.00 0.00 3.46
817 2881 7.171678 CCCTCTTTAGTGATCCATAACGAAATC 59.828 40.741 0.00 0.00 0.00 2.17
819 2883 8.420374 TCTTTAGTGATCCATAACGAAATCAC 57.580 34.615 6.28 6.28 45.30 3.06
822 2886 5.659048 GTGATCCATAACGAAATCACTCC 57.341 43.478 7.00 0.00 42.91 3.85
823 2887 4.511826 GTGATCCATAACGAAATCACTCCC 59.488 45.833 7.00 0.00 42.91 4.30
825 2889 4.402056 TCCATAACGAAATCACTCCCTC 57.598 45.455 0.00 0.00 0.00 4.30
826 2890 4.030913 TCCATAACGAAATCACTCCCTCT 58.969 43.478 0.00 0.00 0.00 3.69
830 2894 6.480320 CCATAACGAAATCACTCCCTCTTTAG 59.520 42.308 0.00 0.00 0.00 1.85
832 2896 5.941555 ACGAAATCACTCCCTCTTTAGAT 57.058 39.130 0.00 0.00 0.00 1.98
834 2898 7.604657 ACGAAATCACTCCCTCTTTAGATAT 57.395 36.000 0.00 0.00 0.00 1.63
905 3002 0.238289 AACTTCTCGGCATTGCGTTG 59.762 50.000 1.91 0.00 0.00 4.10
1014 3115 7.755373 GGTAAGTCAGGAATGATAAAAACAAGC 59.245 37.037 0.00 0.00 0.00 4.01
1021 3122 5.994668 GGAATGATAAAAACAAGCCCACAAA 59.005 36.000 0.00 0.00 0.00 2.83
1057 3158 0.811281 GGGCTCCGATGAACCTTTTG 59.189 55.000 0.00 0.00 0.00 2.44
1058 3159 0.171231 GGCTCCGATGAACCTTTTGC 59.829 55.000 0.00 0.00 0.00 3.68
1124 3228 1.283905 GGGGGAAGGGAAAAGATCGAA 59.716 52.381 0.00 0.00 0.00 3.71
1129 3233 3.381590 GGAAGGGAAAAGATCGAATTGGG 59.618 47.826 0.00 0.00 0.00 4.12
1146 3250 1.265454 GGGAATCCACGGAGACCACT 61.265 60.000 0.09 0.00 0.00 4.00
1311 3415 2.930019 CCCCTCCTCTGGCACACA 60.930 66.667 0.00 0.00 0.00 3.72
1580 3711 0.832135 ACGGAGAAGTGGAGCAAGGA 60.832 55.000 0.00 0.00 0.00 3.36
1620 3751 4.382320 TGCTTCGCGTACCACCCC 62.382 66.667 5.77 0.00 0.00 4.95
1857 6091 2.509336 CGGAAAGATGCGGCGTCT 60.509 61.111 18.70 18.70 36.66 4.18
1982 6216 2.817470 TACCGGACGTTTGCCTACGC 62.817 60.000 9.46 1.77 45.06 4.42
2001 6235 0.824109 CCAAGACGATGGAGCCACTA 59.176 55.000 0.00 0.00 43.54 2.74
2003 6237 1.204704 CAAGACGATGGAGCCACTACA 59.795 52.381 0.00 0.00 0.00 2.74
2008 6242 3.009723 ACGATGGAGCCACTACAAATTG 58.990 45.455 0.00 0.00 0.00 2.32
2013 6247 4.730966 TGGAGCCACTACAAATTGGTTAA 58.269 39.130 0.00 0.00 35.09 2.01
2014 6248 5.141182 TGGAGCCACTACAAATTGGTTAAA 58.859 37.500 0.00 0.00 35.09 1.52
2015 6249 5.777732 TGGAGCCACTACAAATTGGTTAAAT 59.222 36.000 0.00 0.00 35.09 1.40
2016 6250 6.099341 GGAGCCACTACAAATTGGTTAAATG 58.901 40.000 0.00 0.00 35.09 2.32
2017 6251 6.295067 GGAGCCACTACAAATTGGTTAAATGT 60.295 38.462 0.00 0.00 35.09 2.71
2018 6252 7.061566 AGCCACTACAAATTGGTTAAATGTT 57.938 32.000 0.00 0.00 35.09 2.71
2019 6253 7.505258 AGCCACTACAAATTGGTTAAATGTTT 58.495 30.769 0.00 0.00 35.09 2.83
2020 6254 7.990314 AGCCACTACAAATTGGTTAAATGTTTT 59.010 29.630 0.00 0.00 35.09 2.43
2021 6255 8.616942 GCCACTACAAATTGGTTAAATGTTTTT 58.383 29.630 0.00 0.00 35.09 1.94
2051 6285 4.846168 GGATACTCCCTTCCTCAAGTTT 57.154 45.455 0.00 0.00 0.00 2.66
2052 6286 4.518249 GGATACTCCCTTCCTCAAGTTTG 58.482 47.826 0.00 0.00 0.00 2.93
2053 6287 4.019231 GGATACTCCCTTCCTCAAGTTTGT 60.019 45.833 0.00 0.00 0.00 2.83
2054 6288 3.493767 ACTCCCTTCCTCAAGTTTGTC 57.506 47.619 0.00 0.00 0.00 3.18
2055 6289 2.106684 ACTCCCTTCCTCAAGTTTGTCC 59.893 50.000 0.00 0.00 0.00 4.02
2056 6290 1.423921 TCCCTTCCTCAAGTTTGTCCC 59.576 52.381 0.00 0.00 0.00 4.46
2057 6291 1.425448 CCCTTCCTCAAGTTTGTCCCT 59.575 52.381 0.00 0.00 0.00 4.20
2058 6292 2.553247 CCCTTCCTCAAGTTTGTCCCTC 60.553 54.545 0.00 0.00 0.00 4.30
2059 6293 2.106511 CCTTCCTCAAGTTTGTCCCTCA 59.893 50.000 0.00 0.00 0.00 3.86
2060 6294 3.435026 CCTTCCTCAAGTTTGTCCCTCAA 60.435 47.826 0.00 0.00 0.00 3.02
2061 6295 3.943671 TCCTCAAGTTTGTCCCTCAAA 57.056 42.857 0.00 0.00 42.79 2.69
2062 6296 4.453480 TCCTCAAGTTTGTCCCTCAAAT 57.547 40.909 0.00 0.00 45.88 2.32
2063 6297 4.144297 TCCTCAAGTTTGTCCCTCAAATG 58.856 43.478 0.00 0.00 45.88 2.32
2064 6298 3.256631 CCTCAAGTTTGTCCCTCAAATGG 59.743 47.826 0.00 0.00 45.88 3.16
2065 6299 4.144297 CTCAAGTTTGTCCCTCAAATGGA 58.856 43.478 0.00 0.00 45.88 3.41
2066 6300 4.739793 TCAAGTTTGTCCCTCAAATGGAT 58.260 39.130 0.00 0.00 45.88 3.41
2067 6301 4.523943 TCAAGTTTGTCCCTCAAATGGATG 59.476 41.667 0.00 0.00 45.88 3.51
2068 6302 4.118168 AGTTTGTCCCTCAAATGGATGT 57.882 40.909 0.00 0.00 45.88 3.06
2069 6303 5.255397 AGTTTGTCCCTCAAATGGATGTA 57.745 39.130 0.00 0.00 45.88 2.29
2070 6304 5.831103 AGTTTGTCCCTCAAATGGATGTAT 58.169 37.500 0.00 0.00 45.88 2.29
2071 6305 5.888161 AGTTTGTCCCTCAAATGGATGTATC 59.112 40.000 0.00 0.00 45.88 2.24
2072 6306 5.715439 TTGTCCCTCAAATGGATGTATCT 57.285 39.130 0.00 0.00 33.65 1.98
2073 6307 6.823286 TTGTCCCTCAAATGGATGTATCTA 57.177 37.500 0.00 0.00 33.65 1.98
2074 6308 6.425210 TGTCCCTCAAATGGATGTATCTAG 57.575 41.667 0.00 0.00 33.65 2.43
2075 6309 5.221722 TGTCCCTCAAATGGATGTATCTAGC 60.222 44.000 0.00 0.00 33.65 3.42
2076 6310 4.907269 TCCCTCAAATGGATGTATCTAGCA 59.093 41.667 0.00 0.00 0.00 3.49
2077 6311 4.999950 CCCTCAAATGGATGTATCTAGCAC 59.000 45.833 0.00 0.00 0.00 4.40
2078 6312 4.999950 CCTCAAATGGATGTATCTAGCACC 59.000 45.833 0.00 0.00 0.00 5.01
2079 6313 5.455183 CCTCAAATGGATGTATCTAGCACCA 60.455 44.000 0.00 0.00 0.00 4.17
2080 6314 5.368145 TCAAATGGATGTATCTAGCACCAC 58.632 41.667 0.00 0.00 0.00 4.16
2081 6315 3.667497 ATGGATGTATCTAGCACCACG 57.333 47.619 0.00 0.00 0.00 4.94
2082 6316 2.661718 TGGATGTATCTAGCACCACGA 58.338 47.619 0.00 0.00 0.00 4.35
2083 6317 3.230976 TGGATGTATCTAGCACCACGAT 58.769 45.455 0.00 0.00 0.00 3.73
2084 6318 3.641436 TGGATGTATCTAGCACCACGATT 59.359 43.478 0.00 0.00 0.00 3.34
2085 6319 4.830600 TGGATGTATCTAGCACCACGATTA 59.169 41.667 0.00 0.00 0.00 1.75
2086 6320 5.048013 TGGATGTATCTAGCACCACGATTAG 60.048 44.000 0.00 0.00 0.00 1.73
2087 6321 5.047943 GGATGTATCTAGCACCACGATTAGT 60.048 44.000 0.00 0.00 0.00 2.24
2101 6335 6.502136 CACGATTAGTGCTAGATAGATCCA 57.498 41.667 0.00 0.00 44.72 3.41
2102 6336 7.094508 CACGATTAGTGCTAGATAGATCCAT 57.905 40.000 0.00 0.00 44.72 3.41
2103 6337 7.542890 CACGATTAGTGCTAGATAGATCCATT 58.457 38.462 0.00 0.00 44.72 3.16
2104 6338 8.031864 CACGATTAGTGCTAGATAGATCCATTT 58.968 37.037 0.00 0.00 44.72 2.32
2105 6339 9.244292 ACGATTAGTGCTAGATAGATCCATTTA 57.756 33.333 0.00 0.00 0.00 1.40
2110 6344 8.948401 AGTGCTAGATAGATCCATTTAAGAGA 57.052 34.615 0.00 0.00 0.00 3.10
2111 6345 9.023962 AGTGCTAGATAGATCCATTTAAGAGAG 57.976 37.037 0.00 0.00 0.00 3.20
2112 6346 8.802267 GTGCTAGATAGATCCATTTAAGAGAGT 58.198 37.037 0.00 0.00 0.00 3.24
2120 6354 8.970859 AGATCCATTTAAGAGAGTACAATTGG 57.029 34.615 10.83 0.00 0.00 3.16
2121 6355 8.552296 AGATCCATTTAAGAGAGTACAATTGGT 58.448 33.333 10.83 0.00 0.00 3.67
2122 6356 9.178758 GATCCATTTAAGAGAGTACAATTGGTT 57.821 33.333 10.83 0.00 0.00 3.67
2129 6363 9.802039 TTAAGAGAGTACAATTGGTTAAATGGT 57.198 29.630 10.83 0.00 36.35 3.55
2130 6364 7.687941 AGAGAGTACAATTGGTTAAATGGTG 57.312 36.000 10.83 0.00 33.14 4.17
2131 6365 7.458397 AGAGAGTACAATTGGTTAAATGGTGA 58.542 34.615 10.83 0.00 33.14 4.02
2132 6366 7.942341 AGAGAGTACAATTGGTTAAATGGTGAA 59.058 33.333 10.83 0.00 33.14 3.18
2133 6367 8.650143 AGAGTACAATTGGTTAAATGGTGAAT 57.350 30.769 10.83 0.00 33.14 2.57
2134 6368 8.739972 AGAGTACAATTGGTTAAATGGTGAATC 58.260 33.333 10.83 0.00 33.14 2.52
2135 6369 8.415950 AGTACAATTGGTTAAATGGTGAATCA 57.584 30.769 10.83 0.00 33.14 2.57
2136 6370 8.865090 AGTACAATTGGTTAAATGGTGAATCAA 58.135 29.630 10.83 0.00 33.14 2.57
2137 6371 9.651913 GTACAATTGGTTAAATGGTGAATCAAT 57.348 29.630 10.83 0.00 37.87 2.57
2138 6372 8.550710 ACAATTGGTTAAATGGTGAATCAATG 57.449 30.769 10.83 0.00 36.68 2.82
2139 6373 8.156165 ACAATTGGTTAAATGGTGAATCAATGT 58.844 29.630 10.83 0.00 36.68 2.71
2140 6374 8.658609 CAATTGGTTAAATGGTGAATCAATGTC 58.341 33.333 0.00 0.00 36.68 3.06
2141 6375 7.537596 TTGGTTAAATGGTGAATCAATGTCT 57.462 32.000 0.00 0.00 0.00 3.41
2142 6376 8.642935 TTGGTTAAATGGTGAATCAATGTCTA 57.357 30.769 0.00 0.00 0.00 2.59
2143 6377 8.642935 TGGTTAAATGGTGAATCAATGTCTAA 57.357 30.769 0.00 0.00 0.00 2.10
2144 6378 9.253832 TGGTTAAATGGTGAATCAATGTCTAAT 57.746 29.630 0.00 0.00 0.00 1.73
2148 6382 8.469309 AAATGGTGAATCAATGTCTAATAGGG 57.531 34.615 0.00 0.00 0.00 3.53
2149 6383 6.823286 TGGTGAATCAATGTCTAATAGGGA 57.177 37.500 0.00 0.00 0.00 4.20
2150 6384 7.206789 TGGTGAATCAATGTCTAATAGGGAA 57.793 36.000 0.00 0.00 0.00 3.97
2151 6385 7.815383 TGGTGAATCAATGTCTAATAGGGAAT 58.185 34.615 0.00 0.00 0.00 3.01
2152 6386 8.281531 TGGTGAATCAATGTCTAATAGGGAATT 58.718 33.333 0.00 0.00 0.00 2.17
2153 6387 9.136323 GGTGAATCAATGTCTAATAGGGAATTT 57.864 33.333 0.00 0.00 0.00 1.82
2167 6401 7.728847 ATAGGGAATTTTTGTTTTTGTCTGC 57.271 32.000 0.00 0.00 0.00 4.26
2168 6402 5.744171 AGGGAATTTTTGTTTTTGTCTGCT 58.256 33.333 0.00 0.00 0.00 4.24
2169 6403 5.817296 AGGGAATTTTTGTTTTTGTCTGCTC 59.183 36.000 0.00 0.00 0.00 4.26
2170 6404 5.276820 GGGAATTTTTGTTTTTGTCTGCTCG 60.277 40.000 0.00 0.00 0.00 5.03
2171 6405 4.777140 ATTTTTGTTTTTGTCTGCTCGC 57.223 36.364 0.00 0.00 0.00 5.03
2172 6406 3.502191 TTTTGTTTTTGTCTGCTCGCT 57.498 38.095 0.00 0.00 0.00 4.93
2173 6407 2.473530 TTGTTTTTGTCTGCTCGCTG 57.526 45.000 0.00 0.00 0.00 5.18
2174 6408 0.029300 TGTTTTTGTCTGCTCGCTGC 59.971 50.000 0.00 0.00 43.25 5.25
2175 6409 0.308993 GTTTTTGTCTGCTCGCTGCT 59.691 50.000 0.00 0.00 43.37 4.24
2176 6410 1.024271 TTTTTGTCTGCTCGCTGCTT 58.976 45.000 0.00 0.00 43.37 3.91
2177 6411 1.877637 TTTTGTCTGCTCGCTGCTTA 58.122 45.000 0.00 0.00 43.37 3.09
2178 6412 1.877637 TTTGTCTGCTCGCTGCTTAA 58.122 45.000 0.00 0.00 43.37 1.85
2179 6413 2.099141 TTGTCTGCTCGCTGCTTAAT 57.901 45.000 0.00 0.00 43.37 1.40
2180 6414 1.645034 TGTCTGCTCGCTGCTTAATC 58.355 50.000 0.00 0.00 43.37 1.75
2181 6415 1.205655 TGTCTGCTCGCTGCTTAATCT 59.794 47.619 0.00 0.00 43.37 2.40
2182 6416 1.592081 GTCTGCTCGCTGCTTAATCTG 59.408 52.381 0.00 0.00 43.37 2.90
2183 6417 0.304098 CTGCTCGCTGCTTAATCTGC 59.696 55.000 0.00 0.00 43.37 4.26
2184 6418 1.091771 TGCTCGCTGCTTAATCTGCC 61.092 55.000 0.00 0.00 43.37 4.85
2185 6419 1.930100 CTCGCTGCTTAATCTGCCG 59.070 57.895 0.00 0.00 0.00 5.69
2186 6420 0.807667 CTCGCTGCTTAATCTGCCGT 60.808 55.000 0.00 0.00 0.00 5.68
2187 6421 0.806102 TCGCTGCTTAATCTGCCGTC 60.806 55.000 0.00 0.00 0.00 4.79
2188 6422 1.083806 CGCTGCTTAATCTGCCGTCA 61.084 55.000 0.00 0.00 0.00 4.35
2189 6423 0.654683 GCTGCTTAATCTGCCGTCAG 59.345 55.000 0.00 0.00 41.67 3.51
2190 6424 1.293924 CTGCTTAATCTGCCGTCAGG 58.706 55.000 0.00 0.00 40.69 3.86
2191 6425 0.901827 TGCTTAATCTGCCGTCAGGA 59.098 50.000 0.00 0.00 40.69 3.86
2192 6426 1.291132 GCTTAATCTGCCGTCAGGAC 58.709 55.000 0.00 0.00 40.69 3.85
2193 6427 1.134670 GCTTAATCTGCCGTCAGGACT 60.135 52.381 0.00 0.00 40.69 3.85
2194 6428 2.544685 CTTAATCTGCCGTCAGGACTG 58.455 52.381 0.00 0.00 40.69 3.51
2195 6429 1.847328 TAATCTGCCGTCAGGACTGA 58.153 50.000 0.00 0.00 40.69 3.41
2196 6430 1.198713 AATCTGCCGTCAGGACTGAT 58.801 50.000 5.19 0.00 42.18 2.90
2197 6431 1.198713 ATCTGCCGTCAGGACTGATT 58.801 50.000 5.19 0.00 42.18 2.57
2198 6432 0.532573 TCTGCCGTCAGGACTGATTC 59.467 55.000 5.19 0.00 42.18 2.52
2199 6433 0.534412 CTGCCGTCAGGACTGATTCT 59.466 55.000 5.19 0.00 42.18 2.40
2200 6434 0.247460 TGCCGTCAGGACTGATTCTG 59.753 55.000 5.19 0.00 42.18 3.02
2201 6435 0.247736 GCCGTCAGGACTGATTCTGT 59.752 55.000 5.19 0.00 42.18 3.41
2202 6436 1.338200 GCCGTCAGGACTGATTCTGTT 60.338 52.381 5.19 0.00 42.18 3.16
2203 6437 2.872038 GCCGTCAGGACTGATTCTGTTT 60.872 50.000 5.19 0.00 42.18 2.83
2204 6438 3.403038 CCGTCAGGACTGATTCTGTTTT 58.597 45.455 5.19 0.00 42.18 2.43
2205 6439 3.433615 CCGTCAGGACTGATTCTGTTTTC 59.566 47.826 5.19 0.00 42.18 2.29
2206 6440 4.310769 CGTCAGGACTGATTCTGTTTTCT 58.689 43.478 5.19 0.00 42.18 2.52
2207 6441 4.151335 CGTCAGGACTGATTCTGTTTTCTG 59.849 45.833 5.19 6.88 42.18 3.02
2208 6442 5.300752 GTCAGGACTGATTCTGTTTTCTGA 58.699 41.667 5.19 14.79 42.18 3.27
2209 6443 5.936956 GTCAGGACTGATTCTGTTTTCTGAT 59.063 40.000 18.38 0.00 42.18 2.90
2210 6444 7.099764 GTCAGGACTGATTCTGTTTTCTGATA 58.900 38.462 18.38 5.27 42.18 2.15
2211 6445 7.604164 GTCAGGACTGATTCTGTTTTCTGATAA 59.396 37.037 18.38 4.84 42.18 1.75
2212 6446 8.156820 TCAGGACTGATTCTGTTTTCTGATAAA 58.843 33.333 14.79 0.00 34.14 1.40
2213 6447 8.449397 CAGGACTGATTCTGTTTTCTGATAAAG 58.551 37.037 12.65 0.00 0.00 1.85
2214 6448 7.609532 AGGACTGATTCTGTTTTCTGATAAAGG 59.390 37.037 0.00 0.00 0.00 3.11
2215 6449 7.607991 GGACTGATTCTGTTTTCTGATAAAGGA 59.392 37.037 0.00 0.00 0.00 3.36
2216 6450 8.924511 ACTGATTCTGTTTTCTGATAAAGGAA 57.075 30.769 0.00 0.00 0.00 3.36
2217 6451 9.354673 ACTGATTCTGTTTTCTGATAAAGGAAA 57.645 29.630 0.00 0.00 30.31 3.13
2218 6452 9.837525 CTGATTCTGTTTTCTGATAAAGGAAAG 57.162 33.333 0.00 0.00 33.81 2.62
2219 6453 8.796475 TGATTCTGTTTTCTGATAAAGGAAAGG 58.204 33.333 0.00 0.00 33.81 3.11
2220 6454 7.524717 TTCTGTTTTCTGATAAAGGAAAGGG 57.475 36.000 0.00 0.00 33.81 3.95
2221 6455 6.610830 TCTGTTTTCTGATAAAGGAAAGGGT 58.389 36.000 0.00 0.00 33.81 4.34
2222 6456 6.490040 TCTGTTTTCTGATAAAGGAAAGGGTG 59.510 38.462 0.00 0.00 33.81 4.61
2223 6457 6.369629 TGTTTTCTGATAAAGGAAAGGGTGA 58.630 36.000 0.00 0.00 33.81 4.02
2224 6458 6.490040 TGTTTTCTGATAAAGGAAAGGGTGAG 59.510 38.462 0.00 0.00 33.81 3.51
2225 6459 5.843019 TTCTGATAAAGGAAAGGGTGAGT 57.157 39.130 0.00 0.00 0.00 3.41
2226 6460 5.165961 TCTGATAAAGGAAAGGGTGAGTG 57.834 43.478 0.00 0.00 0.00 3.51
2227 6461 4.597507 TCTGATAAAGGAAAGGGTGAGTGT 59.402 41.667 0.00 0.00 0.00 3.55
2228 6462 4.906618 TGATAAAGGAAAGGGTGAGTGTC 58.093 43.478 0.00 0.00 0.00 3.67
2229 6463 4.597507 TGATAAAGGAAAGGGTGAGTGTCT 59.402 41.667 0.00 0.00 0.00 3.41
2230 6464 3.493767 AAAGGAAAGGGTGAGTGTCTC 57.506 47.619 0.00 0.00 0.00 3.36
2231 6465 0.969894 AGGAAAGGGTGAGTGTCTCG 59.030 55.000 0.00 0.00 32.35 4.04
2232 6466 0.966920 GGAAAGGGTGAGTGTCTCGA 59.033 55.000 0.00 0.00 32.35 4.04
2233 6467 1.336980 GGAAAGGGTGAGTGTCTCGAC 60.337 57.143 0.00 0.00 32.35 4.20
2234 6468 0.680061 AAAGGGTGAGTGTCTCGACC 59.320 55.000 0.00 8.67 33.84 4.79
2235 6469 0.469331 AAGGGTGAGTGTCTCGACCA 60.469 55.000 14.87 0.00 35.18 4.02
2236 6470 0.469331 AGGGTGAGTGTCTCGACCAA 60.469 55.000 14.87 0.00 35.18 3.67
2237 6471 0.319641 GGGTGAGTGTCTCGACCAAC 60.320 60.000 14.87 0.00 35.18 3.77
2238 6472 0.674534 GGTGAGTGTCTCGACCAACT 59.325 55.000 10.88 0.00 34.34 3.16
2239 6473 1.068741 GGTGAGTGTCTCGACCAACTT 59.931 52.381 10.88 0.00 34.34 2.66
2240 6474 2.128035 GTGAGTGTCTCGACCAACTTG 58.872 52.381 0.00 0.00 32.35 3.16
2241 6475 2.028876 TGAGTGTCTCGACCAACTTGA 58.971 47.619 0.00 0.00 32.35 3.02
2242 6476 2.628178 TGAGTGTCTCGACCAACTTGAT 59.372 45.455 0.00 0.00 32.35 2.57
2243 6477 3.069586 TGAGTGTCTCGACCAACTTGATT 59.930 43.478 0.00 0.00 32.35 2.57
2244 6478 4.058817 GAGTGTCTCGACCAACTTGATTT 58.941 43.478 0.00 0.00 0.00 2.17
2245 6479 4.451900 AGTGTCTCGACCAACTTGATTTT 58.548 39.130 0.00 0.00 0.00 1.82
2246 6480 4.273480 AGTGTCTCGACCAACTTGATTTTG 59.727 41.667 0.00 0.00 0.00 2.44
2247 6481 4.035208 GTGTCTCGACCAACTTGATTTTGT 59.965 41.667 0.00 0.00 0.00 2.83
2248 6482 4.638421 TGTCTCGACCAACTTGATTTTGTT 59.362 37.500 0.00 0.00 0.00 2.83
2287 6522 2.630098 TCAGCCGGATGATTCTTAGAGG 59.370 50.000 20.59 0.00 0.00 3.69
2327 6562 2.065789 TCCGATCAGCATGCTGGGA 61.066 57.895 39.72 34.24 43.75 4.37
2347 6583 1.123077 TCGTTGGATCATAGCAGGCT 58.877 50.000 0.00 0.00 0.00 4.58
2385 6623 1.302192 AACACCGCCGTATTGCAGT 60.302 52.632 0.00 0.00 0.00 4.40
2389 6627 2.125310 CGCCGTATTGCAGTCCCA 60.125 61.111 0.00 0.00 0.00 4.37
2391 6629 1.376683 GCCGTATTGCAGTCCCACA 60.377 57.895 0.00 0.00 0.00 4.17
2416 6654 2.809174 CCAACGCAGCATCGTCGA 60.809 61.111 0.00 0.00 42.46 4.20
2442 6680 0.895100 GTGAGCTCCATTGCAACCCA 60.895 55.000 12.15 0.00 34.99 4.51
2445 6683 2.277591 GCTCCATTGCAACCCAGCA 61.278 57.895 16.65 0.00 43.99 4.41
2571 6809 1.377725 CTCCATTGCAACTCCGGCT 60.378 57.895 0.00 0.00 0.00 5.52
2637 6875 3.889134 CTTCACTGCAGCTCCGGCA 62.889 63.158 15.27 0.00 41.70 5.69
2673 8581 2.823829 GCTTCATTGTAGGCGCGGG 61.824 63.158 8.83 0.00 0.00 6.13
2674 8582 2.822255 TTCATTGTAGGCGCGGGC 60.822 61.111 17.31 17.31 38.90 6.13
2865 8777 0.038744 CCTCCCCTGAATGTTGTGCT 59.961 55.000 0.00 0.00 0.00 4.40
2948 8861 3.740832 CGTTGCTCTTCACAACACTATGA 59.259 43.478 7.34 0.00 46.14 2.15
2957 8870 1.804326 AACACTATGACGGCGCGAC 60.804 57.895 12.10 5.80 0.00 5.19
2970 8883 4.409218 GCGACGGGCGACACTACA 62.409 66.667 7.81 0.00 44.57 2.74
2971 8884 2.256158 CGACGGGCGACACTACAA 59.744 61.111 0.00 0.00 44.57 2.41
2972 8885 1.372004 CGACGGGCGACACTACAAA 60.372 57.895 0.00 0.00 44.57 2.83
2973 8886 0.940519 CGACGGGCGACACTACAAAA 60.941 55.000 0.00 0.00 44.57 2.44
2974 8887 1.219646 GACGGGCGACACTACAAAAA 58.780 50.000 0.00 0.00 0.00 1.94
2995 8908 5.514274 AAAAAGACACATCCGTGACATTT 57.486 34.783 0.00 0.00 46.80 2.32
2996 8909 5.514274 AAAAGACACATCCGTGACATTTT 57.486 34.783 0.00 1.58 46.80 1.82
2997 8910 4.488126 AAGACACATCCGTGACATTTTG 57.512 40.909 0.00 0.00 46.80 2.44
2998 8911 3.738982 AGACACATCCGTGACATTTTGA 58.261 40.909 0.00 0.00 46.80 2.69
2999 8912 3.748048 AGACACATCCGTGACATTTTGAG 59.252 43.478 0.00 0.00 46.80 3.02
3000 8913 2.226437 ACACATCCGTGACATTTTGAGC 59.774 45.455 0.00 0.00 46.80 4.26
3001 8914 1.812571 ACATCCGTGACATTTTGAGCC 59.187 47.619 0.00 0.00 0.00 4.70
3002 8915 1.086696 ATCCGTGACATTTTGAGCCG 58.913 50.000 0.00 0.00 0.00 5.52
3003 8916 0.034198 TCCGTGACATTTTGAGCCGA 59.966 50.000 0.00 0.00 0.00 5.54
3004 8917 0.871722 CCGTGACATTTTGAGCCGAA 59.128 50.000 0.00 0.00 0.00 4.30
3005 8918 1.399727 CCGTGACATTTTGAGCCGAAC 60.400 52.381 0.00 0.00 0.00 3.95
3006 8919 1.721489 CGTGACATTTTGAGCCGAACG 60.721 52.381 0.00 0.00 0.00 3.95
3007 8920 1.529438 GTGACATTTTGAGCCGAACGA 59.471 47.619 0.00 0.00 0.00 3.85
3008 8921 2.032377 GTGACATTTTGAGCCGAACGAA 60.032 45.455 0.00 0.00 0.00 3.85
3009 8922 2.811431 TGACATTTTGAGCCGAACGAAT 59.189 40.909 0.00 0.00 0.00 3.34
3010 8923 3.252215 TGACATTTTGAGCCGAACGAATT 59.748 39.130 0.00 0.00 0.00 2.17
3011 8924 4.226761 GACATTTTGAGCCGAACGAATTT 58.773 39.130 0.00 0.00 0.00 1.82
3012 8925 4.616953 ACATTTTGAGCCGAACGAATTTT 58.383 34.783 0.00 0.00 0.00 1.82
3013 8926 5.047188 ACATTTTGAGCCGAACGAATTTTT 58.953 33.333 0.00 0.00 0.00 1.94
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 2.366570 GCACCTCCTCCTCCTCCT 59.633 66.667 0.00 0.00 0.00 3.69
2 3 2.039624 TGCACCTCCTCCTCCTCC 59.960 66.667 0.00 0.00 0.00 4.30
30 31 4.118410 CAGATCACTTCATAGTCTGTGCC 58.882 47.826 0.00 0.00 30.26 5.01
31 32 3.555139 GCAGATCACTTCATAGTCTGTGC 59.445 47.826 0.00 0.00 30.92 4.57
42 43 4.633565 CCTAAACTTCTGGCAGATCACTTC 59.366 45.833 19.50 0.00 0.00 3.01
44 45 3.054802 CCCTAAACTTCTGGCAGATCACT 60.055 47.826 19.50 6.48 0.00 3.41
116 117 0.594284 CCGGCGTCGATTTAGAGTCC 60.594 60.000 12.93 0.00 39.00 3.85
122 123 1.514657 CGTCACCGGCGTCGATTTA 60.515 57.895 12.93 0.00 39.00 1.40
221 222 0.182537 TCATAATGGCCTCGGGGTTG 59.817 55.000 1.62 0.00 34.45 3.77
252 253 3.129502 CTGGTACTCGTCGCCGGA 61.130 66.667 5.05 0.00 33.95 5.14
373 413 2.640184 AGCGTACTCCTTAATTTGCCC 58.360 47.619 0.00 0.00 0.00 5.36
439 498 4.851843 TGAATCCTGCAGATGATCAAAGT 58.148 39.130 17.39 0.00 34.56 2.66
452 511 3.674753 CACGATTTGGTTTTGAATCCTGC 59.325 43.478 0.00 0.00 0.00 4.85
456 515 3.674753 CAGGCACGATTTGGTTTTGAATC 59.325 43.478 0.00 0.00 0.00 2.52
501 560 3.375299 AGAATGATAACCAACTCAAGCGC 59.625 43.478 0.00 0.00 0.00 5.92
502 561 5.327091 CAAGAATGATAACCAACTCAAGCG 58.673 41.667 0.00 0.00 0.00 4.68
530 589 6.777091 TGATTCATTGGTCGATGGGATAAATT 59.223 34.615 0.00 0.00 0.00 1.82
543 602 3.887716 CTCCAAGGGATGATTCATTGGTC 59.112 47.826 16.05 0.00 39.50 4.02
546 605 3.067742 GCACTCCAAGGGATGATTCATTG 59.932 47.826 0.00 0.00 0.00 2.82
547 606 3.294214 GCACTCCAAGGGATGATTCATT 58.706 45.455 0.00 0.00 0.00 2.57
576 635 6.494893 TGTTCGGAGTTTAGAAATCCATTG 57.505 37.500 7.77 0.00 32.31 2.82
584 643 2.742053 GCATGCTGTTCGGAGTTTAGAA 59.258 45.455 11.37 0.00 0.00 2.10
601 662 1.511850 TCAAACTCCACGACAGCATG 58.488 50.000 0.00 0.00 46.00 4.06
606 667 1.001974 CCCTGATCAAACTCCACGACA 59.998 52.381 0.00 0.00 0.00 4.35
622 1845 2.715749 TGGATTCACATAGCACCCTG 57.284 50.000 0.00 0.00 0.00 4.45
641 1870 6.489603 TCAATTACAAGGATGGTTGTGGTAT 58.510 36.000 0.00 0.00 40.89 2.73
647 1876 6.528537 TCCATTCAATTACAAGGATGGTTG 57.471 37.500 0.00 0.00 0.00 3.77
701 1931 9.594478 AAAAACATCTTTTCCGTAAAACTGAAT 57.406 25.926 0.00 0.00 31.37 2.57
702 1932 8.989653 AAAAACATCTTTTCCGTAAAACTGAA 57.010 26.923 0.00 0.00 31.37 3.02
730 1960 2.939103 CAACTCGAATGGCTCCCTTAAG 59.061 50.000 0.00 0.00 0.00 1.85
731 1961 2.569853 TCAACTCGAATGGCTCCCTTAA 59.430 45.455 0.00 0.00 0.00 1.85
777 2841 4.635699 AAAGAGGGAGTGGTTTCGTTAT 57.364 40.909 0.00 0.00 0.00 1.89
781 2845 3.006537 TCACTAAAGAGGGAGTGGTTTCG 59.993 47.826 2.44 0.00 42.77 3.46
787 2851 6.284459 GTTATGGATCACTAAAGAGGGAGTG 58.716 44.000 0.00 0.00 38.94 3.51
808 2872 6.845758 TCTAAAGAGGGAGTGATTTCGTTA 57.154 37.500 0.00 0.00 0.00 3.18
813 2877 7.934120 CGGAAATATCTAAAGAGGGAGTGATTT 59.066 37.037 0.00 0.00 0.00 2.17
814 2878 7.445945 CGGAAATATCTAAAGAGGGAGTGATT 58.554 38.462 0.00 0.00 0.00 2.57
815 2879 6.014156 CCGGAAATATCTAAAGAGGGAGTGAT 60.014 42.308 0.00 0.00 0.00 3.06
817 2881 5.070580 ACCGGAAATATCTAAAGAGGGAGTG 59.929 44.000 9.46 0.00 0.00 3.51
819 2883 5.279556 GGACCGGAAATATCTAAAGAGGGAG 60.280 48.000 9.46 0.00 0.00 4.30
820 2884 4.591924 GGACCGGAAATATCTAAAGAGGGA 59.408 45.833 9.46 0.00 0.00 4.20
821 2885 4.593634 AGGACCGGAAATATCTAAAGAGGG 59.406 45.833 9.46 0.00 0.00 4.30
822 2886 5.810080 AGGACCGGAAATATCTAAAGAGG 57.190 43.478 9.46 0.00 0.00 3.69
823 2887 9.425577 GATTAAGGACCGGAAATATCTAAAGAG 57.574 37.037 9.46 0.00 0.00 2.85
825 2889 8.154856 TGGATTAAGGACCGGAAATATCTAAAG 58.845 37.037 9.46 0.00 0.00 1.85
826 2890 7.935210 GTGGATTAAGGACCGGAAATATCTAAA 59.065 37.037 9.46 0.00 0.00 1.85
830 2894 4.689345 CGTGGATTAAGGACCGGAAATATC 59.311 45.833 9.46 2.98 0.00 1.63
832 2896 3.181463 CCGTGGATTAAGGACCGGAAATA 60.181 47.826 9.46 0.00 37.66 1.40
834 2898 1.065998 CCGTGGATTAAGGACCGGAAA 60.066 52.381 9.46 0.00 37.66 3.13
882 2975 0.455633 GCAATGCCGAGAAGTTGCAG 60.456 55.000 0.00 0.00 44.63 4.41
890 2983 0.882484 TTGACAACGCAATGCCGAGA 60.882 50.000 0.00 0.00 0.00 4.04
905 3002 4.217550 TGAAAGGTTCGGATGGAATTTGAC 59.782 41.667 0.00 0.00 36.92 3.18
958 3055 0.869880 AACTTGCGCTCGTTTTTGGC 60.870 50.000 9.73 0.00 0.00 4.52
1014 3115 3.332034 CTTAGTTACCGAGGTTTGTGGG 58.668 50.000 0.00 0.00 0.00 4.61
1047 3148 4.182339 GTTTAAAACGGGCAAAAGGTTCA 58.818 39.130 0.00 0.00 0.00 3.18
1076 3179 0.525668 CTTCCGCGTAGTTGCTCGAT 60.526 55.000 4.92 0.00 0.00 3.59
1084 3187 0.249398 ATTGAAGCCTTCCGCGTAGT 59.751 50.000 4.92 0.00 44.76 2.73
1085 3188 0.652592 CATTGAAGCCTTCCGCGTAG 59.347 55.000 4.92 1.38 44.76 3.51
1086 3189 0.742990 CCATTGAAGCCTTCCGCGTA 60.743 55.000 4.92 0.00 44.76 4.42
1124 3228 0.546598 GGTCTCCGTGGATTCCCAAT 59.453 55.000 0.00 0.00 45.59 3.16
1129 3233 0.741221 GCAGTGGTCTCCGTGGATTC 60.741 60.000 0.00 0.00 0.00 2.52
1146 3250 0.613260 AGAAGTAGCGTTCCATGGCA 59.387 50.000 6.96 0.00 0.00 4.92
1261 3365 2.887568 CATCTCCGTGGTGCGCTC 60.888 66.667 9.73 4.47 39.71 5.03
1580 3711 3.790437 CCTCGTGCCATGCCTCCT 61.790 66.667 0.00 0.00 0.00 3.69
1620 3751 2.280524 TTGTGCTTCCCCGTCGTG 60.281 61.111 0.00 0.00 0.00 4.35
1704 5938 1.918957 CCTTCTTCCTCCAGAACCCAT 59.081 52.381 0.00 0.00 0.00 4.00
1839 6073 3.564027 GACGCCGCATCTTTCCGG 61.564 66.667 0.00 0.00 46.94 5.14
1851 6085 4.821589 CTCCTGCCCGAAGACGCC 62.822 72.222 0.00 0.00 38.29 5.68
1908 6142 1.075970 CCTCCCCTCATCCTCGTGA 60.076 63.158 0.00 0.00 0.00 4.35
1982 6216 0.824109 TAGTGGCTCCATCGTCTTGG 59.176 55.000 0.00 0.00 38.18 3.61
2031 6265 5.167303 ACAAACTTGAGGAAGGGAGTATC 57.833 43.478 0.00 0.00 32.95 2.24
2032 6266 4.019231 GGACAAACTTGAGGAAGGGAGTAT 60.019 45.833 0.00 0.00 32.95 2.12
2033 6267 3.326880 GGACAAACTTGAGGAAGGGAGTA 59.673 47.826 0.00 0.00 32.95 2.59
2034 6268 2.106684 GGACAAACTTGAGGAAGGGAGT 59.893 50.000 0.00 0.00 32.95 3.85
2035 6269 2.553247 GGGACAAACTTGAGGAAGGGAG 60.553 54.545 0.00 0.00 32.95 4.30
2036 6270 1.423921 GGGACAAACTTGAGGAAGGGA 59.576 52.381 0.00 0.00 32.95 4.20
2037 6271 1.425448 AGGGACAAACTTGAGGAAGGG 59.575 52.381 0.00 0.00 32.95 3.95
2038 6272 2.106511 TGAGGGACAAACTTGAGGAAGG 59.893 50.000 0.00 0.00 32.95 3.46
2039 6273 3.492102 TGAGGGACAAACTTGAGGAAG 57.508 47.619 0.00 0.00 35.07 3.46
2040 6274 3.943671 TTGAGGGACAAACTTGAGGAA 57.056 42.857 0.00 0.00 35.39 3.36
2041 6275 3.943671 TTTGAGGGACAAACTTGAGGA 57.056 42.857 0.00 0.00 42.57 3.71
2050 6284 5.715439 AGATACATCCATTTGAGGGACAA 57.285 39.130 0.00 0.00 37.23 3.18
2051 6285 5.221722 GCTAGATACATCCATTTGAGGGACA 60.222 44.000 0.00 0.00 37.23 4.02
2052 6286 5.221722 TGCTAGATACATCCATTTGAGGGAC 60.222 44.000 0.00 0.00 37.23 4.46
2053 6287 4.907269 TGCTAGATACATCCATTTGAGGGA 59.093 41.667 0.00 0.00 39.14 4.20
2054 6288 4.999950 GTGCTAGATACATCCATTTGAGGG 59.000 45.833 0.00 0.00 0.00 4.30
2055 6289 4.999950 GGTGCTAGATACATCCATTTGAGG 59.000 45.833 0.00 0.00 0.00 3.86
2056 6290 5.468072 GTGGTGCTAGATACATCCATTTGAG 59.532 44.000 0.00 0.00 0.00 3.02
2057 6291 5.368145 GTGGTGCTAGATACATCCATTTGA 58.632 41.667 0.00 0.00 0.00 2.69
2058 6292 4.212004 CGTGGTGCTAGATACATCCATTTG 59.788 45.833 0.00 0.00 0.00 2.32
2059 6293 4.100963 TCGTGGTGCTAGATACATCCATTT 59.899 41.667 0.00 0.00 0.00 2.32
2060 6294 3.641436 TCGTGGTGCTAGATACATCCATT 59.359 43.478 0.00 0.00 0.00 3.16
2061 6295 3.230976 TCGTGGTGCTAGATACATCCAT 58.769 45.455 0.00 0.00 0.00 3.41
2062 6296 2.661718 TCGTGGTGCTAGATACATCCA 58.338 47.619 0.00 0.00 0.00 3.41
2063 6297 3.944055 ATCGTGGTGCTAGATACATCC 57.056 47.619 0.00 0.00 0.00 3.51
2064 6298 5.859114 CACTAATCGTGGTGCTAGATACATC 59.141 44.000 0.00 0.00 40.02 3.06
2065 6299 5.773575 CACTAATCGTGGTGCTAGATACAT 58.226 41.667 0.00 0.00 40.02 2.29
2066 6300 5.183014 CACTAATCGTGGTGCTAGATACA 57.817 43.478 0.00 0.00 40.02 2.29
2077 6311 5.416013 TGGATCTATCTAGCACTAATCGTGG 59.584 44.000 0.00 0.00 43.97 4.94
2078 6312 6.502136 TGGATCTATCTAGCACTAATCGTG 57.498 41.667 0.00 0.00 46.58 4.35
2079 6313 7.710676 AATGGATCTATCTAGCACTAATCGT 57.289 36.000 0.00 0.00 0.00 3.73
2085 6319 8.948401 TCTCTTAAATGGATCTATCTAGCACT 57.052 34.615 0.00 0.00 0.00 4.40
2086 6320 8.802267 ACTCTCTTAAATGGATCTATCTAGCAC 58.198 37.037 0.00 0.00 0.00 4.40
2087 6321 8.948401 ACTCTCTTAAATGGATCTATCTAGCA 57.052 34.615 0.00 0.00 0.00 3.49
2095 6329 8.552296 ACCAATTGTACTCTCTTAAATGGATCT 58.448 33.333 4.43 0.00 0.00 2.75
2096 6330 8.738645 ACCAATTGTACTCTCTTAAATGGATC 57.261 34.615 4.43 0.00 0.00 3.36
2103 6337 9.802039 ACCATTTAACCAATTGTACTCTCTTAA 57.198 29.630 4.43 0.00 0.00 1.85
2104 6338 9.226606 CACCATTTAACCAATTGTACTCTCTTA 57.773 33.333 4.43 0.00 0.00 2.10
2105 6339 7.942341 TCACCATTTAACCAATTGTACTCTCTT 59.058 33.333 4.43 0.00 0.00 2.85
2106 6340 7.458397 TCACCATTTAACCAATTGTACTCTCT 58.542 34.615 4.43 0.00 0.00 3.10
2107 6341 7.681939 TCACCATTTAACCAATTGTACTCTC 57.318 36.000 4.43 0.00 0.00 3.20
2108 6342 8.650143 ATTCACCATTTAACCAATTGTACTCT 57.350 30.769 4.43 0.00 0.00 3.24
2109 6343 8.519526 TGATTCACCATTTAACCAATTGTACTC 58.480 33.333 4.43 0.00 0.00 2.59
2110 6344 8.415950 TGATTCACCATTTAACCAATTGTACT 57.584 30.769 4.43 0.00 0.00 2.73
2111 6345 9.651913 ATTGATTCACCATTTAACCAATTGTAC 57.348 29.630 4.43 0.00 0.00 2.90
2112 6346 9.650539 CATTGATTCACCATTTAACCAATTGTA 57.349 29.630 4.43 0.00 0.00 2.41
2113 6347 8.156165 ACATTGATTCACCATTTAACCAATTGT 58.844 29.630 4.43 0.00 0.00 2.71
2114 6348 8.550710 ACATTGATTCACCATTTAACCAATTG 57.449 30.769 0.00 0.00 0.00 2.32
2115 6349 8.596293 AGACATTGATTCACCATTTAACCAATT 58.404 29.630 0.00 0.00 0.00 2.32
2116 6350 8.137745 AGACATTGATTCACCATTTAACCAAT 57.862 30.769 0.00 0.00 0.00 3.16
2117 6351 7.537596 AGACATTGATTCACCATTTAACCAA 57.462 32.000 0.00 0.00 0.00 3.67
2118 6352 8.642935 TTAGACATTGATTCACCATTTAACCA 57.357 30.769 0.00 0.00 0.00 3.67
2122 6356 9.573166 CCCTATTAGACATTGATTCACCATTTA 57.427 33.333 0.00 0.00 0.00 1.40
2123 6357 8.281531 TCCCTATTAGACATTGATTCACCATTT 58.718 33.333 0.00 0.00 0.00 2.32
2124 6358 7.815383 TCCCTATTAGACATTGATTCACCATT 58.185 34.615 0.00 0.00 0.00 3.16
2125 6359 7.392766 TCCCTATTAGACATTGATTCACCAT 57.607 36.000 0.00 0.00 0.00 3.55
2126 6360 6.823286 TCCCTATTAGACATTGATTCACCA 57.177 37.500 0.00 0.00 0.00 4.17
2127 6361 8.697507 AATTCCCTATTAGACATTGATTCACC 57.302 34.615 0.00 0.00 0.00 4.02
2141 6375 9.267084 GCAGACAAAAACAAAAATTCCCTATTA 57.733 29.630 0.00 0.00 0.00 0.98
2142 6376 7.992608 AGCAGACAAAAACAAAAATTCCCTATT 59.007 29.630 0.00 0.00 0.00 1.73
2143 6377 7.508687 AGCAGACAAAAACAAAAATTCCCTAT 58.491 30.769 0.00 0.00 0.00 2.57
2144 6378 6.883744 AGCAGACAAAAACAAAAATTCCCTA 58.116 32.000 0.00 0.00 0.00 3.53
2145 6379 5.744171 AGCAGACAAAAACAAAAATTCCCT 58.256 33.333 0.00 0.00 0.00 4.20
2146 6380 5.276820 CGAGCAGACAAAAACAAAAATTCCC 60.277 40.000 0.00 0.00 0.00 3.97
2147 6381 5.727249 CGAGCAGACAAAAACAAAAATTCC 58.273 37.500 0.00 0.00 0.00 3.01
2148 6382 5.005682 AGCGAGCAGACAAAAACAAAAATTC 59.994 36.000 0.00 0.00 0.00 2.17
2149 6383 4.869861 AGCGAGCAGACAAAAACAAAAATT 59.130 33.333 0.00 0.00 0.00 1.82
2150 6384 4.268405 CAGCGAGCAGACAAAAACAAAAAT 59.732 37.500 0.00 0.00 0.00 1.82
2151 6385 3.611986 CAGCGAGCAGACAAAAACAAAAA 59.388 39.130 0.00 0.00 0.00 1.94
2152 6386 3.178267 CAGCGAGCAGACAAAAACAAAA 58.822 40.909 0.00 0.00 0.00 2.44
2153 6387 2.796304 CAGCGAGCAGACAAAAACAAA 58.204 42.857 0.00 0.00 0.00 2.83
2154 6388 1.533756 GCAGCGAGCAGACAAAAACAA 60.534 47.619 0.00 0.00 44.79 2.83
2155 6389 0.029300 GCAGCGAGCAGACAAAAACA 59.971 50.000 0.00 0.00 44.79 2.83
2156 6390 2.788535 GCAGCGAGCAGACAAAAAC 58.211 52.632 0.00 0.00 44.79 2.43
2166 6400 1.645997 GGCAGATTAAGCAGCGAGC 59.354 57.895 1.86 0.00 46.19 5.03
2167 6401 0.807667 ACGGCAGATTAAGCAGCGAG 60.808 55.000 1.86 1.84 0.00 5.03
2168 6402 0.806102 GACGGCAGATTAAGCAGCGA 60.806 55.000 1.86 0.00 0.00 4.93
2169 6403 1.083806 TGACGGCAGATTAAGCAGCG 61.084 55.000 1.86 0.91 0.00 5.18
2170 6404 0.654683 CTGACGGCAGATTAAGCAGC 59.345 55.000 14.96 0.00 45.17 5.25
2171 6405 1.134699 TCCTGACGGCAGATTAAGCAG 60.135 52.381 23.07 0.00 45.17 4.24
2172 6406 0.901827 TCCTGACGGCAGATTAAGCA 59.098 50.000 23.07 0.00 45.17 3.91
2173 6407 1.134670 AGTCCTGACGGCAGATTAAGC 60.135 52.381 23.07 2.67 45.17 3.09
2174 6408 2.166459 TCAGTCCTGACGGCAGATTAAG 59.834 50.000 23.07 1.63 45.17 1.85
2175 6409 2.176045 TCAGTCCTGACGGCAGATTAA 58.824 47.619 23.07 0.00 45.17 1.40
2176 6410 1.847328 TCAGTCCTGACGGCAGATTA 58.153 50.000 23.07 1.00 45.17 1.75
2177 6411 1.198713 ATCAGTCCTGACGGCAGATT 58.801 50.000 23.07 0.77 45.17 2.40
2178 6412 1.137872 GAATCAGTCCTGACGGCAGAT 59.862 52.381 23.07 0.95 45.17 2.90
2179 6413 0.532573 GAATCAGTCCTGACGGCAGA 59.467 55.000 23.07 2.49 45.17 4.26
2180 6414 0.534412 AGAATCAGTCCTGACGGCAG 59.466 55.000 12.69 12.69 43.11 4.85
2181 6415 0.247460 CAGAATCAGTCCTGACGGCA 59.753 55.000 0.00 0.00 43.11 5.69
2182 6416 0.247736 ACAGAATCAGTCCTGACGGC 59.752 55.000 0.00 0.00 43.11 5.68
2183 6417 2.751166 AACAGAATCAGTCCTGACGG 57.249 50.000 0.00 0.00 43.11 4.79
2184 6418 4.151335 CAGAAAACAGAATCAGTCCTGACG 59.849 45.833 0.00 0.00 43.11 4.35
2185 6419 5.300752 TCAGAAAACAGAATCAGTCCTGAC 58.699 41.667 0.00 0.00 43.11 3.51
2186 6420 5.551305 TCAGAAAACAGAATCAGTCCTGA 57.449 39.130 0.00 0.00 44.59 3.86
2187 6421 7.912056 TTATCAGAAAACAGAATCAGTCCTG 57.088 36.000 0.00 0.00 36.53 3.86
2188 6422 7.609532 CCTTTATCAGAAAACAGAATCAGTCCT 59.390 37.037 0.00 0.00 0.00 3.85
2189 6423 7.607991 TCCTTTATCAGAAAACAGAATCAGTCC 59.392 37.037 0.00 0.00 0.00 3.85
2190 6424 8.553459 TCCTTTATCAGAAAACAGAATCAGTC 57.447 34.615 0.00 0.00 0.00 3.51
2191 6425 8.924511 TTCCTTTATCAGAAAACAGAATCAGT 57.075 30.769 0.00 0.00 0.00 3.41
2192 6426 9.837525 CTTTCCTTTATCAGAAAACAGAATCAG 57.162 33.333 0.00 0.00 31.91 2.90
2193 6427 8.796475 CCTTTCCTTTATCAGAAAACAGAATCA 58.204 33.333 0.00 0.00 31.91 2.57
2194 6428 8.246871 CCCTTTCCTTTATCAGAAAACAGAATC 58.753 37.037 0.00 0.00 31.91 2.52
2195 6429 7.730332 ACCCTTTCCTTTATCAGAAAACAGAAT 59.270 33.333 0.00 0.00 31.91 2.40
2196 6430 7.014230 CACCCTTTCCTTTATCAGAAAACAGAA 59.986 37.037 0.00 0.00 31.91 3.02
2197 6431 6.490040 CACCCTTTCCTTTATCAGAAAACAGA 59.510 38.462 0.00 0.00 31.91 3.41
2198 6432 6.490040 TCACCCTTTCCTTTATCAGAAAACAG 59.510 38.462 0.00 0.00 31.91 3.16
2199 6433 6.369629 TCACCCTTTCCTTTATCAGAAAACA 58.630 36.000 0.00 0.00 31.91 2.83
2200 6434 6.490381 ACTCACCCTTTCCTTTATCAGAAAAC 59.510 38.462 0.00 0.00 31.91 2.43
2201 6435 6.490040 CACTCACCCTTTCCTTTATCAGAAAA 59.510 38.462 0.00 0.00 31.91 2.29
2202 6436 6.003950 CACTCACCCTTTCCTTTATCAGAAA 58.996 40.000 0.00 0.00 0.00 2.52
2203 6437 5.073144 ACACTCACCCTTTCCTTTATCAGAA 59.927 40.000 0.00 0.00 0.00 3.02
2204 6438 4.597507 ACACTCACCCTTTCCTTTATCAGA 59.402 41.667 0.00 0.00 0.00 3.27
2205 6439 4.911390 ACACTCACCCTTTCCTTTATCAG 58.089 43.478 0.00 0.00 0.00 2.90
2206 6440 4.597507 AGACACTCACCCTTTCCTTTATCA 59.402 41.667 0.00 0.00 0.00 2.15
2207 6441 5.167303 AGACACTCACCCTTTCCTTTATC 57.833 43.478 0.00 0.00 0.00 1.75
2208 6442 4.322801 CGAGACACTCACCCTTTCCTTTAT 60.323 45.833 0.00 0.00 0.00 1.40
2209 6443 3.006537 CGAGACACTCACCCTTTCCTTTA 59.993 47.826 0.00 0.00 0.00 1.85
2210 6444 2.224305 CGAGACACTCACCCTTTCCTTT 60.224 50.000 0.00 0.00 0.00 3.11
2211 6445 1.344763 CGAGACACTCACCCTTTCCTT 59.655 52.381 0.00 0.00 0.00 3.36
2212 6446 0.969894 CGAGACACTCACCCTTTCCT 59.030 55.000 0.00 0.00 0.00 3.36
2213 6447 0.966920 TCGAGACACTCACCCTTTCC 59.033 55.000 0.00 0.00 0.00 3.13
2214 6448 1.336980 GGTCGAGACACTCACCCTTTC 60.337 57.143 5.55 0.00 30.84 2.62
2215 6449 0.680061 GGTCGAGACACTCACCCTTT 59.320 55.000 5.55 0.00 30.84 3.11
2216 6450 0.469331 TGGTCGAGACACTCACCCTT 60.469 55.000 5.55 0.00 33.74 3.95
2217 6451 0.469331 TTGGTCGAGACACTCACCCT 60.469 55.000 5.55 0.00 33.74 4.34
2218 6452 0.319641 GTTGGTCGAGACACTCACCC 60.320 60.000 5.55 7.10 33.74 4.61
2219 6453 0.674534 AGTTGGTCGAGACACTCACC 59.325 55.000 5.55 0.00 34.58 4.02
2220 6454 2.128035 CAAGTTGGTCGAGACACTCAC 58.872 52.381 5.55 0.00 0.00 3.51
2221 6455 2.028876 TCAAGTTGGTCGAGACACTCA 58.971 47.619 2.34 0.00 0.00 3.41
2222 6456 2.795175 TCAAGTTGGTCGAGACACTC 57.205 50.000 2.34 0.00 0.00 3.51
2223 6457 3.753294 AATCAAGTTGGTCGAGACACT 57.247 42.857 2.34 0.00 0.00 3.55
2224 6458 4.035208 ACAAAATCAAGTTGGTCGAGACAC 59.965 41.667 2.34 0.00 0.00 3.67
2225 6459 4.196193 ACAAAATCAAGTTGGTCGAGACA 58.804 39.130 2.34 0.00 0.00 3.41
2226 6460 4.813296 ACAAAATCAAGTTGGTCGAGAC 57.187 40.909 2.34 0.00 0.00 3.36
2227 6461 5.828299 AAACAAAATCAAGTTGGTCGAGA 57.172 34.783 2.34 0.00 0.00 4.04
2228 6462 5.231991 CCAAAACAAAATCAAGTTGGTCGAG 59.768 40.000 2.34 0.00 32.58 4.04
2229 6463 5.105752 CCAAAACAAAATCAAGTTGGTCGA 58.894 37.500 2.34 0.00 32.58 4.20
2230 6464 4.269844 CCCAAAACAAAATCAAGTTGGTCG 59.730 41.667 2.34 0.00 34.89 4.79
2231 6465 4.574421 CCCCAAAACAAAATCAAGTTGGTC 59.426 41.667 2.34 0.00 34.89 4.02
2232 6466 4.522114 CCCCAAAACAAAATCAAGTTGGT 58.478 39.130 2.34 0.00 34.89 3.67
2233 6467 3.882288 CCCCCAAAACAAAATCAAGTTGG 59.118 43.478 2.34 0.00 36.17 3.77
2234 6468 3.314913 GCCCCCAAAACAAAATCAAGTTG 59.685 43.478 0.00 0.00 0.00 3.16
2235 6469 3.201930 AGCCCCCAAAACAAAATCAAGTT 59.798 39.130 0.00 0.00 0.00 2.66
2236 6470 2.777114 AGCCCCCAAAACAAAATCAAGT 59.223 40.909 0.00 0.00 0.00 3.16
2237 6471 3.140623 CAGCCCCCAAAACAAAATCAAG 58.859 45.455 0.00 0.00 0.00 3.02
2238 6472 2.747799 GCAGCCCCCAAAACAAAATCAA 60.748 45.455 0.00 0.00 0.00 2.57
2239 6473 1.202746 GCAGCCCCCAAAACAAAATCA 60.203 47.619 0.00 0.00 0.00 2.57
2240 6474 1.072173 AGCAGCCCCCAAAACAAAATC 59.928 47.619 0.00 0.00 0.00 2.17
2241 6475 1.139439 AGCAGCCCCCAAAACAAAAT 58.861 45.000 0.00 0.00 0.00 1.82
2242 6476 1.414550 GTAGCAGCCCCCAAAACAAAA 59.585 47.619 0.00 0.00 0.00 2.44
2243 6477 1.044611 GTAGCAGCCCCCAAAACAAA 58.955 50.000 0.00 0.00 0.00 2.83
2244 6478 0.105964 TGTAGCAGCCCCCAAAACAA 60.106 50.000 0.00 0.00 0.00 2.83
2245 6479 0.105964 TTGTAGCAGCCCCCAAAACA 60.106 50.000 0.00 0.00 0.00 2.83
2246 6480 1.044611 TTTGTAGCAGCCCCCAAAAC 58.955 50.000 0.00 0.00 0.00 2.43
2247 6481 1.899142 GATTTGTAGCAGCCCCCAAAA 59.101 47.619 5.98 0.00 31.30 2.44
2248 6482 1.203112 TGATTTGTAGCAGCCCCCAAA 60.203 47.619 4.68 4.68 0.00 3.28
2287 6522 1.801178 GGCTAAGCAGGCGTATGATTC 59.199 52.381 0.00 0.00 37.63 2.52
2327 6562 1.696336 AGCCTGCTATGATCCAACGAT 59.304 47.619 0.00 0.00 0.00 3.73
2347 6583 4.908687 ACCTGTCGTGCTTGCGCA 62.909 61.111 5.66 5.66 45.60 6.09
2385 6623 1.074775 GTTGGCACTCCATGTGGGA 59.925 57.895 0.00 0.00 46.27 4.37
2389 6627 1.968017 CTGCGTTGGCACTCCATGT 60.968 57.895 0.00 0.00 46.21 3.21
2391 6629 3.058160 GCTGCGTTGGCACTCCAT 61.058 61.111 0.00 0.00 46.21 3.41
2398 6636 4.505217 CGACGATGCTGCGTTGGC 62.505 66.667 13.43 9.42 45.72 4.52
2416 6654 0.670546 CAATGGAGCTCACCGAACGT 60.671 55.000 17.19 0.00 0.00 3.99
2442 6680 2.977178 CTCCGTTGGAGCTCTGCT 59.023 61.111 14.64 0.00 43.29 4.24
2470 6708 2.819595 GCAATGGAGCTTCGCCGA 60.820 61.111 0.00 0.00 0.00 5.54
2525 6763 2.429571 GCGTCGGTGCTACGTTGA 60.430 61.111 0.00 0.00 42.26 3.18
2571 6809 2.044650 GGGCTGCAATGGAGCTCA 60.045 61.111 25.07 1.87 36.87 4.26
2647 6885 0.647410 CTACAATGAAGCGACGCTGG 59.353 55.000 25.24 12.96 39.62 4.85
2676 8584 1.067821 CTCTCTCGGTCAATAGCCACC 59.932 57.143 0.00 0.00 0.00 4.61
2678 8586 0.747255 GCTCTCTCGGTCAATAGCCA 59.253 55.000 0.00 0.00 0.00 4.75
2679 8587 0.318275 CGCTCTCTCGGTCAATAGCC 60.318 60.000 0.00 0.00 0.00 3.93
2680 8588 0.937231 GCGCTCTCTCGGTCAATAGC 60.937 60.000 0.00 0.00 0.00 2.97
2682 8590 2.795165 AGCGCTCTCTCGGTCAATA 58.205 52.632 2.64 0.00 34.96 1.90
2841 8752 1.792757 AACATTCAGGGGAGGCTGCA 61.793 55.000 8.68 0.00 0.00 4.41
2844 8755 0.038744 CACAACATTCAGGGGAGGCT 59.961 55.000 0.00 0.00 0.00 4.58
2929 8842 3.317150 CGTCATAGTGTTGTGAAGAGCA 58.683 45.455 0.00 0.00 0.00 4.26
2973 8886 5.514274 AAATGTCACGGATGTGTCTTTTT 57.486 34.783 0.00 0.00 46.49 1.94
2974 8887 5.067153 TCAAAATGTCACGGATGTGTCTTTT 59.933 36.000 0.00 0.00 46.49 2.27
2975 8888 4.578516 TCAAAATGTCACGGATGTGTCTTT 59.421 37.500 0.00 0.00 46.49 2.52
2976 8889 4.133820 TCAAAATGTCACGGATGTGTCTT 58.866 39.130 0.00 0.00 46.49 3.01
2977 8890 3.738982 TCAAAATGTCACGGATGTGTCT 58.261 40.909 0.00 0.00 46.49 3.41
2978 8891 3.667960 GCTCAAAATGTCACGGATGTGTC 60.668 47.826 0.00 0.00 46.49 3.67
2979 8892 2.226437 GCTCAAAATGTCACGGATGTGT 59.774 45.455 0.00 0.00 46.49 3.72
2981 8894 1.812571 GGCTCAAAATGTCACGGATGT 59.187 47.619 0.00 0.00 0.00 3.06
2982 8895 1.202065 CGGCTCAAAATGTCACGGATG 60.202 52.381 0.00 0.00 0.00 3.51
2983 8896 1.086696 CGGCTCAAAATGTCACGGAT 58.913 50.000 0.00 0.00 0.00 4.18
2984 8897 0.034198 TCGGCTCAAAATGTCACGGA 59.966 50.000 0.00 0.00 0.00 4.69
2985 8898 0.871722 TTCGGCTCAAAATGTCACGG 59.128 50.000 0.00 0.00 0.00 4.94
2986 8899 1.721489 CGTTCGGCTCAAAATGTCACG 60.721 52.381 0.00 0.00 0.00 4.35
2987 8900 1.529438 TCGTTCGGCTCAAAATGTCAC 59.471 47.619 0.00 0.00 0.00 3.67
2988 8901 1.872388 TCGTTCGGCTCAAAATGTCA 58.128 45.000 0.00 0.00 0.00 3.58
2989 8902 2.961522 TTCGTTCGGCTCAAAATGTC 57.038 45.000 0.00 0.00 0.00 3.06
2990 8903 3.915437 AATTCGTTCGGCTCAAAATGT 57.085 38.095 0.00 0.00 0.00 2.71
2991 8904 5.574815 AAAAATTCGTTCGGCTCAAAATG 57.425 34.783 0.00 0.00 0.00 2.32


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.