AutoCloner

Multiple sequence alignment - TraesCS7B01G300300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G300300	chr7B	100.000	3297	0	0	1	3297	537670899	537674195	0.000000e+00	6089.0
1	TraesCS7B01G300300	chr7B	85.695	741	65	25	1605	2308	537826690	537827426	0.000000e+00	743.0
2	TraesCS7B01G300300	chr7B	92.917	240	12	2	971	1205	576358339	576358100	8.760000e-91	344.0
3	TraesCS7B01G300300	chr7B	90.909	242	13	5	2068	2309	537791857	537792089	1.910000e-82	316.0
4	TraesCS7B01G300300	chr7B	82.222	135	21	3	1719	1851	537780594	537780727	2.690000e-21	113.0
5	TraesCS7B01G300300	chr7D	94.906	1590	64	10	1719	3295	509555511	509557096	0.000000e+00	2471.0
6	TraesCS7B01G300300	chr7D	92.668	1473	74	20	266	1719	509554015	509555472	0.000000e+00	2091.0
7	TraesCS7B01G300300	chr7D	83.670	594	57	24	267	830	509571814	509572397	1.050000e-144	523.0
8	TraesCS7B01G300300	chr7D	91.512	377	31	1	1933	2309	509610953	509611328	4.880000e-143	518.0
9	TraesCS7B01G300300	chr7D	85.799	169	7	5	102	270	509553360	509553511	2.630000e-36	163.0
10	TraesCS7B01G300300	chr7D	94.521	73	2	2	2	74	509553005	509553075	9.670000e-21	111.0
11	TraesCS7B01G300300	chr7A	92.865	1724	82	18	1	1710	580468513	580470209	0.000000e+00	2464.0
12	TraesCS7B01G300300	chr7A	94.062	943	34	7	1758	2697	580470323	580471246	0.000000e+00	1411.0
13	TraesCS7B01G300300	chr7A	93.684	570	30	6	2731	3297	580471247	580471813	0.000000e+00	848.0
14	TraesCS7B01G300300	chr7A	89.870	385	24	6	1933	2309	580506125	580506502	6.400000e-132	481.0
15	TraesCS7B01G300300	chr7A	84.048	420	39	19	267	666	580481328	580481739	2.400000e-101	379.0
16	TraesCS7B01G300300	chr7A	90.079	252	22	3	581	830	580481756	580482006	1.140000e-84	324.0
17	TraesCS7B01G300300	chr7A	90.270	185	15	2	2949	3130	158300192	158300376	4.250000e-59	239.0
18	TraesCS7B01G300300	chr5A	95.833	456	18	1	2676	3130	425485550	425486005	0.000000e+00	736.0
19	TraesCS7B01G300300	chr5A	92.982	456	31	1	2676	3130	44116949	44117404	0.000000e+00	664.0
20	TraesCS7B01G300300	chr3D	95.175	456	21	1	2676	3130	258275477	258275022	0.000000e+00	719.0
21	TraesCS7B01G300300	chr1A	95.745	423	17	1	2676	3097	13963284	13962862	0.000000e+00	680.0
22	TraesCS7B01G300300	chr1A	80.392	510	58	19	1642	2117	531824759	531824258	1.880000e-92	350.0
23	TraesCS7B01G300300	chr2B	86.420	486	42	9	2179	2663	126731509	126731047	8.160000e-141	510.0
24	TraesCS7B01G300300	chr2B	87.972	424	23	11	1719	2142	126731904	126731509	2.980000e-130	475.0
25	TraesCS7B01G300300	chr2B	92.531	241	12	3	971	1205	529046309	529046549	1.130000e-89	340.0
26	TraesCS7B01G300300	chr2B	93.258	89	6	0	1618	1706	126732041	126731953	7.420000e-27	132.0
27	TraesCS7B01G300300	chr6D	93.333	240	12	1	971	1206	201584803	201585042	5.230000e-93	351.0
28	TraesCS7B01G300300	chr6D	89.394	66	3	1	4	65	201578765	201578830	2.730000e-11	80.5
29	TraesCS7B01G300300	chr3B	93.333	240	11	2	971	1205	385853902	385853663	1.880000e-92	350.0
30	TraesCS7B01G300300	chr5B	80.198	505	62	14	1642	2114	667412950	667412452	8.760000e-91	344.0
31	TraesCS7B01G300300	chr6B	92.405	237	13	2	973	1205	233933906	233933671	1.900000e-87	333.0
32	TraesCS7B01G300300	chr1B	90.361	249	17	3	962	1205	303874638	303874884	1.480000e-83	320.0
33	TraesCS7B01G300300	chr2A	90.417	240	17	3	971	1205	741426643	741426405	8.880000e-81	311.0

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G300300	chr7B	537670899	537674195	3296	False	6089.000000	6089	100.000000	1	3297	1	chr7B.!!$F1	3296
1	TraesCS7B01G300300	chr7B	537826690	537827426	736	False	743.000000	743	85.695000	1605	2308	1	chr7B.!!$F4	703
2	TraesCS7B01G300300	chr7D	509553005	509557096	4091	False	1209.000000	2471	91.973500	2	3295	4	chr7D.!!$F3	3293
3	TraesCS7B01G300300	chr7D	509571814	509572397	583	False	523.000000	523	83.670000	267	830	1	chr7D.!!$F1	563
4	TraesCS7B01G300300	chr7A	580468513	580471813	3300	False	1574.333333	2464	93.537000	1	3297	3	chr7A.!!$F3	3296
5	TraesCS7B01G300300	chr7A	580481328	580482006	678	False	351.500000	379	87.063500	267	830	2	chr7A.!!$F4	563
6	TraesCS7B01G300300	chr1A	531824258	531824759	501	True	350.000000	350	80.392000	1642	2117	1	chr1A.!!$R2	475
7	TraesCS7B01G300300	chr2B	126731047	126732041	994	True	372.333333	510	89.216667	1618	2663	3	chr2B.!!$R1	1045

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
358	1159	0.037697	TTGCTTATCGTGTGCTCGGT	60.038	50.0	0.0	0.0	0.0	4.69	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2343	3387	0.035439	TTTAGCCTCCGCCTTGAAGG	60.035	55.0	6.92	6.92	38.8	3.46	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	3.826157	GGGATCTGATCTGACACTAGAGG	59.174	52.174	16.61	0.00	0.00	3.69
59	60	0.329596	GAGGCTGGGGATTGAACTGT	59.670	55.000	0.00	0.00	0.00	3.55
78	79	0.328258	TGGCTCCTAGGTTGCTTTCC	59.672	55.000	22.02	10.94	0.00	3.13
157	432	0.807667	ATGCTTCAAGCCGACTAGCG	60.808	55.000	7.01	0.00	41.51	4.26
173	452	5.277876	CGACTAGCGGAGTTACAAGATGTAT	60.278	44.000	0.00	0.00	39.06	2.29
192	471	8.306761	AGATGTATTTCAGGATTTGTTTTCACC	58.693	33.333	0.00	0.00	0.00	4.02
193	472	7.595819	TGTATTTCAGGATTTGTTTTCACCT	57.404	32.000	0.00	0.00	0.00	4.00
194	473	8.017418	TGTATTTCAGGATTTGTTTTCACCTT	57.983	30.769	0.00	0.00	0.00	3.50
195	474	9.137459	TGTATTTCAGGATTTGTTTTCACCTTA	57.863	29.630	0.00	0.00	0.00	2.69
198	477	8.885494	TTTCAGGATTTGTTTTCACCTTATTG	57.115	30.769	0.00	0.00	0.00	1.90
199	478	7.595819	TCAGGATTTGTTTTCACCTTATTGT	57.404	32.000	0.00	0.00	0.00	2.71
200	479	7.657336	TCAGGATTTGTTTTCACCTTATTGTC	58.343	34.615	0.00	0.00	0.00	3.18
240	519	3.693085	GAGGCTCTGCATTTGAAATCTGA	59.307	43.478	7.40	0.00	0.00	3.27
275	1062	4.204978	CGTTTGAGTAAAAAGCAGTTGCAG	59.795	41.667	6.90	0.00	45.16	4.41
292	1079	2.891580	TGCAGACTTTAGAGAGGAACGT	59.108	45.455	0.00	0.00	0.00	3.99
297	1084	6.183360	GCAGACTTTAGAGAGGAACGTATGTA	60.183	42.308	0.00	0.00	0.00	2.29
328	1115	4.443034	GGTTGATCCTTCTAATGCCTACGT	60.443	45.833	0.00	0.00	0.00	3.57
339	1133	2.831685	TGCCTACGTTTCACACTCAT	57.168	45.000	0.00	0.00	0.00	2.90
358	1159	0.037697	TTGCTTATCGTGTGCTCGGT	60.038	50.000	0.00	0.00	0.00	4.69
414	1218	5.042593	TGTAAAGCTGTGCTGACAAAAATG	58.957	37.500	0.00	0.00	39.62	2.32
445	1251	9.473007	AAGCTATCTGTAGATCTATGCTTATGA	57.527	33.333	5.57	0.00	36.37	2.15
539	1360	8.267183	TCTCAATGCATTGATAGGAGAAGTTTA	58.733	33.333	35.61	13.59	44.92	2.01
610	1530	2.138320	CATCATTACTAGGCACTGCGG	58.862	52.381	0.00	0.00	41.52	5.69
633	1553	1.827394	GCCAACCTACGGGCTGATA	59.173	57.895	0.00	0.00	46.74	2.15
726	1646	3.313012	TCGTCACATTCTGGTGTAAGG	57.687	47.619	0.00	0.00	39.76	2.69
883	1810	3.891366	GAGCAATGGTGGGCTATATTGTT	59.109	43.478	10.72	6.36	41.22	2.83
887	1814	5.385198	CAATGGTGGGCTATATTGTTAGGT	58.615	41.667	3.67	0.00	0.00	3.08
1097	2024	1.951209	TTGTATGGAGCTGGACCTGA	58.049	50.000	1.91	0.00	0.00	3.86
1177	2105	5.170748	ACTTTATGCAAAGCAATGTAAGCC	58.829	37.500	0.00	0.00	44.27	4.35
1180	2108	6.462552	TTATGCAAAGCAATGTAAGCCATA	57.537	33.333	0.00	0.00	43.62	2.74
1183	2111	6.469342	TGCAAAGCAATGTAAGCCATAGGC	62.469	45.833	0.00	0.00	42.19	3.93
1205	2133	6.256539	AGGCGCATTTCATTCATAGATATACG	59.743	38.462	10.83	0.00	0.00	3.06
1353	2282	5.576447	TGAAGGTTGTCTTGTTTCCTTTC	57.424	39.130	0.00	0.00	38.42	2.62
1373	2302	0.179073	CTGCATCGGGTAAGGACTGG	60.179	60.000	0.00	0.00	0.00	4.00
1397	2326	2.558795	GCCTCCTTTTTCTCAAGAACCC	59.441	50.000	0.00	0.00	33.13	4.11
1398	2327	3.832527	CCTCCTTTTTCTCAAGAACCCA	58.167	45.455	0.00	0.00	33.13	4.51
1399	2328	4.411013	CCTCCTTTTTCTCAAGAACCCAT	58.589	43.478	0.00	0.00	33.13	4.00
1428	2357	1.204704	CGTACCTGCAGATTGTGAGGA	59.795	52.381	17.39	0.00	31.41	3.71
1484	2413	2.699321	GGGACACTGGACTAGGATAACC	59.301	54.545	0.00	0.00	0.00	2.85
1675	2604	7.176589	ACTTGTAGGACTCTAGAAGAAATGG	57.823	40.000	14.47	0.00	44.79	3.16
1784	2780	5.344743	TGCAGATACTAGAGAAAGGTTGG	57.655	43.478	0.00	0.00	0.00	3.77
1842	2841	5.552870	TTTCTCTAGAGGAAAACACTGCT	57.447	39.130	19.67	0.00	30.94	4.24
1843	2842	4.792521	TCTCTAGAGGAAAACACTGCTC	57.207	45.455	19.67	0.00	34.19	4.26
1844	2843	3.191581	TCTCTAGAGGAAAACACTGCTCG	59.808	47.826	19.67	0.00	38.70	5.03
1845	2844	2.891580	TCTAGAGGAAAACACTGCTCGT	59.108	45.455	0.00	0.00	38.70	4.18
1846	2845	2.622064	AGAGGAAAACACTGCTCGTT	57.378	45.000	0.00	0.00	38.70	3.85
1847	2846	3.746045	AGAGGAAAACACTGCTCGTTA	57.254	42.857	0.00	0.00	38.70	3.18
1848	2847	4.067972	AGAGGAAAACACTGCTCGTTAA	57.932	40.909	0.00	0.00	38.70	2.01
1849	2848	4.642429	AGAGGAAAACACTGCTCGTTAAT	58.358	39.130	0.00	0.00	38.70	1.40
1850	2849	4.452455	AGAGGAAAACACTGCTCGTTAATG	59.548	41.667	0.00	0.00	38.70	1.90
1851	2850	4.134563	AGGAAAACACTGCTCGTTAATGT	58.865	39.130	0.00	0.00	0.00	2.71
1852	2851	4.578928	AGGAAAACACTGCTCGTTAATGTT	59.421	37.500	0.00	0.00	35.05	2.71
1853	2852	4.909880	GGAAAACACTGCTCGTTAATGTTC	59.090	41.667	0.00	0.00	32.46	3.18
1854	2853	5.493133	AAAACACTGCTCGTTAATGTTCA	57.507	34.783	0.00	0.00	32.46	3.18
1855	2854	4.732285	AACACTGCTCGTTAATGTTCAG	57.268	40.909	13.51	13.51	0.00	3.02
1856	2855	3.067106	ACACTGCTCGTTAATGTTCAGG	58.933	45.455	17.03	11.33	0.00	3.86
1857	2856	3.244078	ACACTGCTCGTTAATGTTCAGGA	60.244	43.478	17.03	1.59	0.00	3.86
1858	2857	3.935203	CACTGCTCGTTAATGTTCAGGAT	59.065	43.478	17.03	2.31	0.00	3.24
1859	2858	5.109210	CACTGCTCGTTAATGTTCAGGATA	58.891	41.667	17.03	0.00	0.00	2.59
1887	2928	5.733620	AATGATTCAATGGTGCTTGTCTT	57.266	34.783	0.00	0.00	0.00	3.01
2120	3161	8.982723	TCTTCTGGAGCTACTCATACTATTTTT	58.017	33.333	0.00	0.00	31.08	1.94
2202	3244	0.036010	CAGGGTGCATCGAGGACTTT	60.036	55.000	0.00	0.00	38.81	2.66
2449	3494	3.840666	AGTTCAGGCTCTTATTGGAGTGA	59.159	43.478	0.00	0.00	35.89	3.41
2472	3517	9.267084	GTGATAAATTTCTTGATAGAGGACCTC	57.733	37.037	14.15	14.15	0.00	3.85
2515	3560	4.518278	TCTTATTGGCCTGCAAAGGATA	57.482	40.909	3.32	0.00	0.00	2.59
2522	3567	5.381184	TGGCCTGCAAAGGATATTACTTA	57.619	39.130	3.32	0.00	0.00	2.24
2523	3568	5.761205	TGGCCTGCAAAGGATATTACTTAA	58.239	37.500	3.32	0.00	0.00	1.85
2820	3868	7.765695	TCAATCTTGATTAAGTTCTTTGCCT	57.234	32.000	0.00	0.00	35.38	4.75
2892	3940	2.290260	CCAAGGAAGCACATGGACAGTA	60.290	50.000	0.00	0.00	34.82	2.74
2904	3952	6.757947	GCACATGGACAGTAAAATTTGCATAT	59.242	34.615	0.00	0.00	0.00	1.78
2963	4018	9.753674	TCTTTCTTGTTATTATTCACCTCCAAT	57.246	29.630	0.00	0.00	0.00	3.16
2996	4052	3.547054	TCACCTTACCGTTGTTCTGTT	57.453	42.857	0.00	0.00	0.00	3.16
3014	4070	7.168637	TGTTCTGTTAGTATCTGTTCGACAAAC	59.831	37.037	0.00	0.00	38.43	2.93
3081	4138	5.992217	AGTTGATCTTTGGCCGAATATCTAC	59.008	40.000	25.28	25.28	0.00	2.59
3098	4155	2.434336	TCTACGAAACATCCAGATGGGG	59.566	50.000	12.10	1.34	42.91	4.96
3141	4198	4.539726	TGCTCTTATGAGAAATGCCCAAT	58.460	39.130	9.72	0.00	42.73	3.16
3179	4236	9.551339	TTAGTTTACTAATACTTTCCCCTCTGA	57.449	33.333	0.00	0.00	33.83	3.27
3188	4245	2.534042	TTCCCCTCTGACAGGTAGAG	57.466	55.000	1.81	0.00	41.51	2.43
3210	4267	6.546403	AGAGCTGAATGAATTGCTGACATAAT	59.454	34.615	0.00	0.00	35.76	1.28
3261	4320	5.647658	TCTTGCATGTGGTATGTTTTCCTAG	59.352	40.000	0.00	0.00	0.00	3.02

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
43	44	1.598701	GCCACAGTTCAATCCCCAGC	61.599	60.000	0.00	0.00	0.00	4.85
59	60	0.328258	GGAAAGCAACCTAGGAGCCA	59.672	55.000	17.98	0.00	0.00	4.75
157	432	8.738645	AATCCTGAAATACATCTTGTAACTCC	57.261	34.615	0.00	0.00	36.31	3.85
173	452	8.482128	ACAATAAGGTGAAAACAAATCCTGAAA	58.518	29.630	0.00	0.00	0.00	2.69
192	471	7.420800	GTCAGGAAGCCAATAATGACAATAAG	58.579	38.462	0.00	0.00	37.56	1.73
193	472	6.038161	CGTCAGGAAGCCAATAATGACAATAA	59.962	38.462	0.00	0.00	37.50	1.40
194	473	5.527214	CGTCAGGAAGCCAATAATGACAATA	59.473	40.000	0.00	0.00	37.50	1.90
195	474	4.336433	CGTCAGGAAGCCAATAATGACAAT	59.664	41.667	0.00	0.00	37.50	2.71
196	475	3.689161	CGTCAGGAAGCCAATAATGACAA	59.311	43.478	0.00	0.00	37.50	3.18
197	476	3.055458	TCGTCAGGAAGCCAATAATGACA	60.055	43.478	0.00	0.00	37.50	3.58
198	477	3.531538	TCGTCAGGAAGCCAATAATGAC	58.468	45.455	0.00	0.00	34.99	3.06
199	478	3.432186	CCTCGTCAGGAAGCCAATAATGA	60.432	47.826	0.00	0.00	43.65	2.57
200	479	2.874701	CCTCGTCAGGAAGCCAATAATG	59.125	50.000	0.00	0.00	43.65	1.90
275	1062	6.692249	GCTTACATACGTTCCTCTCTAAAGTC	59.308	42.308	0.00	0.00	0.00	3.01
328	1115	4.754618	ACACGATAAGCAATGAGTGTGAAA	59.245	37.500	6.51	0.00	40.70	2.69
339	1133	0.037697	ACCGAGCACACGATAAGCAA	60.038	50.000	0.00	0.00	35.09	3.91
358	1159	7.001674	ACCACTAACCAAATGTTCACAAGATA	58.998	34.615	0.00	0.00	38.42	1.98
539	1360	6.696411	TGGTTTCACAACTTCTTTTTCACAT	58.304	32.000	0.00	0.00	32.90	3.21
653	1573	7.425224	AATTCGAAAGAGAGGGAGAAATAGA	57.575	36.000	0.00	0.00	43.69	1.98
883	1810	6.630203	TTAACTGCATCCCTTAGAAACCTA	57.370	37.500	0.00	0.00	0.00	3.08
887	1814	5.710099	CCACTTTAACTGCATCCCTTAGAAA	59.290	40.000	0.00	0.00	0.00	2.52
997	1924	1.019673	ATGTTCATCGCTGCCATCAC	58.980	50.000	0.00	0.00	0.00	3.06
1008	1935	4.428294	TCCTCCCAGATCAATGTTCATC	57.572	45.455	0.00	0.00	0.00	2.92
1177	2105	5.868043	TCTATGAATGAAATGCGCCTATG	57.132	39.130	4.18	0.00	0.00	2.23
1180	2108	6.256539	CGTATATCTATGAATGAAATGCGCCT	59.743	38.462	4.18	0.00	0.00	5.52
1183	2111	7.953393	ACACGTATATCTATGAATGAAATGCG	58.047	34.615	0.00	0.00	0.00	4.73
1299	2228	4.133820	TCACATACTGGTTGTTCACTTGG	58.866	43.478	0.00	0.00	0.00	3.61
1353	2282	0.179073	CAGTCCTTACCCGATGCAGG	60.179	60.000	0.00	0.00	0.00	4.85
1373	2302	2.508526	TCTTGAGAAAAAGGAGGCAGC	58.491	47.619	0.00	0.00	0.00	5.25
1397	2326	1.795872	TGCAGGTACGACACGAAAATG	59.204	47.619	0.00	0.00	0.00	2.32
1398	2327	2.066262	CTGCAGGTACGACACGAAAAT	58.934	47.619	5.57	0.00	0.00	1.82
1399	2328	1.067364	TCTGCAGGTACGACACGAAAA	59.933	47.619	15.13	0.00	0.00	2.29
1428	2357	8.012957	AGAAACGATATAAGGATTGAGTGAGT	57.987	34.615	0.00	0.00	0.00	3.41
1484	2413	2.581354	CTTCCTCCCACTGGCTCG	59.419	66.667	0.00	0.00	0.00	5.03
1640	2569	6.456501	AGAGTCCTACAAGTACAACAATCAC	58.543	40.000	0.00	0.00	0.00	3.06
1675	2604	3.320541	ACTGCTCATAGAGTCATACTGCC	59.679	47.826	0.00	0.00	31.39	4.85
1784	2780	7.201652	GCATCACAAAAGTTAATCTCTACCCTC	60.202	40.741	0.00	0.00	0.00	4.30
1838	2837	5.406780	GGATATCCTGAACATTAACGAGCAG	59.593	44.000	14.97	0.00	0.00	4.24
1855	2854	7.395489	AGCACCATTGAATCATTAAGGATATCC	59.605	37.037	14.41	14.41	0.00	2.59
1856	2855	8.345724	AGCACCATTGAATCATTAAGGATATC	57.654	34.615	2.54	4.57	0.00	1.63
1857	2856	8.582437	CAAGCACCATTGAATCATTAAGGATAT	58.418	33.333	2.54	0.00	31.55	1.63
1858	2857	7.560991	ACAAGCACCATTGAATCATTAAGGATA	59.439	33.333	2.54	0.00	34.20	2.59
1859	2858	6.381994	ACAAGCACCATTGAATCATTAAGGAT	59.618	34.615	0.00	0.00	34.20	3.24
2120	3161	0.036164	ATACAGAACCACGGCAGCAA	59.964	50.000	0.00	0.00	0.00	3.91
2202	3244	3.388552	TCCTGCTAGGATGTCTCTCAA	57.611	47.619	1.25	0.00	40.06	3.02
2343	3387	0.035439	TTTAGCCTCCGCCTTGAAGG	60.035	55.000	6.92	6.92	38.80	3.46
2398	3443	6.534634	ACAAGGCTACTACAAAAGTTCATCT	58.465	36.000	0.00	0.00	39.80	2.90
2522	3567	7.497249	GTCTTCAGCTAGTCATAAATCATGGTT	59.503	37.037	0.00	0.00	35.16	3.67
2523	3568	6.989169	GTCTTCAGCTAGTCATAAATCATGGT	59.011	38.462	0.00	0.00	35.16	3.55
2755	3803	9.656040	TTAGGGAACAATGATCAATTTGATTTG	57.344	29.630	14.50	15.22	37.20	2.32
2756	3804	9.657419	GTTAGGGAACAATGATCAATTTGATTT	57.343	29.630	14.50	3.50	34.85	2.17
2820	3868	0.179094	ACTTCAAAGCACCGTGACGA	60.179	50.000	6.54	0.00	0.00	4.20
2909	3957	6.478129	ACGTGAAGGGTGAATAAATAAAGGA	58.522	36.000	0.00	0.00	0.00	3.36
2963	4018	8.670135	CAACGGTAAGGTGAATGAATAATAACA	58.330	33.333	0.00	0.00	40.93	2.41
3014	4070	4.095483	AGGCAAAGAAATGCTTATCACTCG	59.905	41.667	0.00	0.00	45.68	4.18
3081	4138	2.017049	GAACCCCATCTGGATGTTTCG	58.983	52.381	9.35	0.00	37.11	3.46
3098	4155	5.591877	AGCAATGAGTCATAATTCAGGGAAC	59.408	40.000	5.94	0.00	0.00	3.62
3179	4236	3.944015	GCAATTCATTCAGCTCTACCTGT	59.056	43.478	0.00	0.00	34.47	4.00
3188	4245	7.766219	AAATTATGTCAGCAATTCATTCAGC	57.234	32.000	0.00	0.00	0.00	4.26
3261	4320	9.783256	GGTTCAAATTAAGTGTGTATAATGGTC	57.217	33.333	0.00	0.00	0.00	4.02

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.