Multiple sequence alignment - TraesCS7B01G299200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G299200 chr7B 100.000 4038 0 0 1 4038 536008173 536004136 0.000000e+00 7457
1 TraesCS7B01G299200 chr7B 95.312 128 6 0 1836 1963 350883219 350883092 1.900000e-48 204
2 TraesCS7B01G299200 chr7D 95.847 1228 37 8 1961 3178 507819019 507817796 0.000000e+00 1973
3 TraesCS7B01G299200 chr7D 95.311 1109 41 7 736 1839 507820118 507819016 0.000000e+00 1749
4 TraesCS7B01G299200 chr7D 94.595 444 19 3 3596 4038 507817356 507816917 0.000000e+00 682
5 TraesCS7B01G299200 chr7D 91.270 504 37 4 253 750 507820635 507820133 0.000000e+00 680
6 TraesCS7B01G299200 chr7D 86.595 373 26 10 3204 3562 507817714 507817352 1.360000e-104 390
7 TraesCS7B01G299200 chr7D 91.770 243 18 1 1 241 191536911 191536669 1.800000e-88 337
8 TraesCS7B01G299200 chr7D 86.391 169 19 2 576 740 37116840 37116672 8.920000e-42 182
9 TraesCS7B01G299200 chr7A 91.806 1379 63 26 1961 3294 577444213 577442840 0.000000e+00 1875
10 TraesCS7B01G299200 chr7A 92.196 1102 51 13 759 1839 577445297 577444210 0.000000e+00 1526
11 TraesCS7B01G299200 chr7A 92.525 816 39 12 3240 4038 577442836 577442026 0.000000e+00 1149
12 TraesCS7B01G299200 chr7A 90.196 510 39 7 253 757 577448111 577447608 0.000000e+00 654
13 TraesCS7B01G299200 chr7A 85.380 171 20 2 575 740 197136295 197136125 5.370000e-39 172
14 TraesCS7B01G299200 chr7A 84.211 171 22 3 576 741 46194516 46194346 1.160000e-35 161
15 TraesCS7B01G299200 chr6B 92.181 243 19 0 1 243 678114733 678114975 1.070000e-90 344
16 TraesCS7B01G299200 chr6B 88.934 244 25 2 1 243 262843452 262843210 2.360000e-77 300
17 TraesCS7B01G299200 chr6B 95.522 134 6 0 1832 1965 159156929 159156796 8.790000e-52 215
18 TraesCS7B01G299200 chr6B 95.420 131 6 0 1836 1966 207511028 207510898 4.090000e-50 209
19 TraesCS7B01G299200 chr2D 92.181 243 19 0 1 243 164115537 164115779 1.070000e-90 344
20 TraesCS7B01G299200 chr2D 85.802 162 23 0 389 550 571078958 571079119 5.370000e-39 172
21 TraesCS7B01G299200 chr1D 91.701 241 20 0 1 241 193655623 193655863 6.470000e-88 335
22 TraesCS7B01G299200 chr1D 87.075 147 19 0 389 535 470591590 470591736 2.500000e-37 167
23 TraesCS7B01G299200 chr1A 95.420 131 6 0 1836 1966 486045772 486045902 4.090000e-50 209
24 TraesCS7B01G299200 chr5D 94.118 136 7 1 1833 1968 90314273 90314139 5.290000e-49 206
25 TraesCS7B01G299200 chr2B 93.525 139 8 1 1837 1975 34111054 34111191 5.290000e-49 206
26 TraesCS7B01G299200 chr2B 83.616 177 26 3 374 550 206593732 206593559 3.230000e-36 163
27 TraesCS7B01G299200 chr4A 92.908 141 8 2 1832 1970 236160632 236160492 1.900000e-48 204
28 TraesCS7B01G299200 chr4A 85.890 163 21 2 390 551 346685133 346685294 5.370000e-39 172
29 TraesCS7B01G299200 chr3B 92.908 141 9 1 1831 1970 207301290 207301430 1.900000e-48 204
30 TraesCS7B01G299200 chr3B 84.337 166 21 4 575 736 591828764 591828600 1.500000e-34 158
31 TraesCS7B01G299200 chr5B 92.254 142 11 0 1833 1974 436166718 436166859 6.840000e-48 202
32 TraesCS7B01G299200 chr5B 83.616 177 26 3 374 550 54041326 54041153 3.230000e-36 163
33 TraesCS7B01G299200 chr3D 85.465 172 23 2 385 555 87926164 87925994 1.150000e-40 178
34 TraesCS7B01G299200 chr3D 88.435 147 15 2 376 522 531052694 531052550 4.150000e-40 176
35 TraesCS7B01G299200 chr3D 83.030 165 24 3 576 736 511654379 511654543 3.250000e-31 147
36 TraesCS7B01G299200 chr4D 85.799 169 21 3 2430 2596 89049281 89049448 4.150000e-40 176
37 TraesCS7B01G299200 chr4D 78.673 211 32 9 558 761 389519822 389520026 1.180000e-25 128
38 TraesCS7B01G299200 chr1B 83.616 177 25 3 567 739 11983935 11984111 3.230000e-36 163
39 TraesCS7B01G299200 chr4B 80.000 160 19 8 2430 2587 125723785 125723933 5.520000e-19 106


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G299200 chr7B 536004136 536008173 4037 True 7457.0 7457 100.00000 1 4038 1 chr7B.!!$R2 4037
1 TraesCS7B01G299200 chr7D 507816917 507820635 3718 True 1094.8 1973 92.72360 253 4038 5 chr7D.!!$R3 3785
2 TraesCS7B01G299200 chr7A 577442026 577448111 6085 True 1301.0 1875 91.68075 253 4038 4 chr7A.!!$R3 3785

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
100 101 0.033796 ATCTGGTGCCTTGTCCATGG 60.034 55.0 4.97 4.97 33.01 3.66 F
236 237 0.033920 CAACTTCCAAAAGCCTGCCC 59.966 55.0 0.00 0.00 35.81 5.36 F
238 239 0.178924 ACTTCCAAAAGCCTGCCCAT 60.179 50.0 0.00 0.00 35.81 4.00 F
1855 4222 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.0 5.23 0.00 44.66 2.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1836 4203 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.0 13.64 0.0 46.06 2.59 R
1837 4204 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.0 13.64 0.0 46.06 3.85 R
1946 4313 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.0 0.00 0.0 0.00 4.30 R
3178 5566 0.107945 GAGATGGACACAGAGTGCCC 60.108 60.0 0.00 0.0 36.61 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.520290 CATGCAGTCCAATGCTTTCAT 57.480 42.857 0.17 0.00 46.63 2.57
21 22 3.186909 CATGCAGTCCAATGCTTTCATG 58.813 45.455 0.17 0.00 46.63 3.07
22 23 2.516906 TGCAGTCCAATGCTTTCATGA 58.483 42.857 0.17 0.00 46.63 3.07
23 24 2.490509 TGCAGTCCAATGCTTTCATGAG 59.509 45.455 0.00 0.00 46.63 2.90
24 25 2.751259 GCAGTCCAATGCTTTCATGAGA 59.249 45.455 0.00 0.00 43.07 3.27
25 26 3.380637 GCAGTCCAATGCTTTCATGAGAT 59.619 43.478 0.00 0.00 43.07 2.75
26 27 4.497674 GCAGTCCAATGCTTTCATGAGATC 60.498 45.833 0.00 0.00 43.07 2.75
27 28 4.036498 CAGTCCAATGCTTTCATGAGATCC 59.964 45.833 0.00 0.00 32.23 3.36
28 29 3.003068 GTCCAATGCTTTCATGAGATCCG 59.997 47.826 0.00 0.00 32.23 4.18
29 30 2.287427 CCAATGCTTTCATGAGATCCGC 60.287 50.000 0.00 0.00 32.23 5.54
30 31 1.602311 ATGCTTTCATGAGATCCGCC 58.398 50.000 0.00 0.00 0.00 6.13
31 32 0.543277 TGCTTTCATGAGATCCGCCT 59.457 50.000 0.00 0.00 0.00 5.52
32 33 1.065199 TGCTTTCATGAGATCCGCCTT 60.065 47.619 0.00 0.00 0.00 4.35
33 34 1.332997 GCTTTCATGAGATCCGCCTTG 59.667 52.381 0.00 0.00 0.00 3.61
34 35 2.910199 CTTTCATGAGATCCGCCTTGA 58.090 47.619 0.00 0.00 0.00 3.02
35 36 3.474600 CTTTCATGAGATCCGCCTTGAT 58.525 45.455 0.00 0.00 0.00 2.57
36 37 4.635223 CTTTCATGAGATCCGCCTTGATA 58.365 43.478 0.00 0.00 0.00 2.15
37 38 4.687901 TTCATGAGATCCGCCTTGATAA 57.312 40.909 0.00 0.00 0.00 1.75
38 39 4.897509 TCATGAGATCCGCCTTGATAAT 57.102 40.909 0.00 0.00 0.00 1.28
39 40 4.572909 TCATGAGATCCGCCTTGATAATG 58.427 43.478 0.00 0.00 0.00 1.90
40 41 4.040829 TCATGAGATCCGCCTTGATAATGT 59.959 41.667 0.00 0.00 0.00 2.71
41 42 3.732212 TGAGATCCGCCTTGATAATGTG 58.268 45.455 0.00 0.00 0.00 3.21
42 43 2.481952 GAGATCCGCCTTGATAATGTGC 59.518 50.000 0.00 0.00 0.00 4.57
43 44 1.537202 GATCCGCCTTGATAATGTGCC 59.463 52.381 0.00 0.00 0.00 5.01
44 45 0.254462 TCCGCCTTGATAATGTGCCA 59.746 50.000 0.00 0.00 0.00 4.92
45 46 1.102154 CCGCCTTGATAATGTGCCAA 58.898 50.000 0.00 0.00 0.00 4.52
46 47 1.202290 CCGCCTTGATAATGTGCCAAC 60.202 52.381 0.00 0.00 0.00 3.77
47 48 1.472082 CGCCTTGATAATGTGCCAACA 59.528 47.619 0.00 0.00 41.58 3.33
61 62 0.802494 CCAACACACGGCATAGAACC 59.198 55.000 0.00 0.00 0.00 3.62
62 63 1.610624 CCAACACACGGCATAGAACCT 60.611 52.381 0.00 0.00 0.00 3.50
63 64 1.732259 CAACACACGGCATAGAACCTC 59.268 52.381 0.00 0.00 0.00 3.85
64 65 0.249398 ACACACGGCATAGAACCTCC 59.751 55.000 0.00 0.00 0.00 4.30
65 66 0.462047 CACACGGCATAGAACCTCCC 60.462 60.000 0.00 0.00 0.00 4.30
66 67 0.907704 ACACGGCATAGAACCTCCCA 60.908 55.000 0.00 0.00 0.00 4.37
67 68 0.179073 CACGGCATAGAACCTCCCAG 60.179 60.000 0.00 0.00 0.00 4.45
68 69 0.617820 ACGGCATAGAACCTCCCAGT 60.618 55.000 0.00 0.00 0.00 4.00
69 70 1.342674 ACGGCATAGAACCTCCCAGTA 60.343 52.381 0.00 0.00 0.00 2.74
70 71 1.760613 CGGCATAGAACCTCCCAGTAA 59.239 52.381 0.00 0.00 0.00 2.24
71 72 2.169769 CGGCATAGAACCTCCCAGTAAA 59.830 50.000 0.00 0.00 0.00 2.01
72 73 3.741388 CGGCATAGAACCTCCCAGTAAAG 60.741 52.174 0.00 0.00 0.00 1.85
73 74 3.206964 GCATAGAACCTCCCAGTAAAGC 58.793 50.000 0.00 0.00 0.00 3.51
74 75 3.809905 CATAGAACCTCCCAGTAAAGCC 58.190 50.000 0.00 0.00 0.00 4.35
75 76 0.613777 AGAACCTCCCAGTAAAGCCG 59.386 55.000 0.00 0.00 0.00 5.52
76 77 0.323957 GAACCTCCCAGTAAAGCCGT 59.676 55.000 0.00 0.00 0.00 5.68
77 78 0.323957 AACCTCCCAGTAAAGCCGTC 59.676 55.000 0.00 0.00 0.00 4.79
78 79 1.221021 CCTCCCAGTAAAGCCGTCC 59.779 63.158 0.00 0.00 0.00 4.79
79 80 1.153628 CTCCCAGTAAAGCCGTCCG 60.154 63.158 0.00 0.00 0.00 4.79
80 81 1.601419 CTCCCAGTAAAGCCGTCCGA 61.601 60.000 0.00 0.00 0.00 4.55
81 82 1.186917 TCCCAGTAAAGCCGTCCGAA 61.187 55.000 0.00 0.00 0.00 4.30
82 83 0.107848 CCCAGTAAAGCCGTCCGAAT 60.108 55.000 0.00 0.00 0.00 3.34
83 84 1.287425 CCAGTAAAGCCGTCCGAATC 58.713 55.000 0.00 0.00 0.00 2.52
84 85 1.134788 CCAGTAAAGCCGTCCGAATCT 60.135 52.381 0.00 0.00 0.00 2.40
85 86 1.927174 CAGTAAAGCCGTCCGAATCTG 59.073 52.381 0.00 0.00 0.00 2.90
86 87 1.134788 AGTAAAGCCGTCCGAATCTGG 60.135 52.381 0.00 0.00 0.00 3.86
87 88 0.899720 TAAAGCCGTCCGAATCTGGT 59.100 50.000 0.00 0.00 0.00 4.00
88 89 0.673644 AAAGCCGTCCGAATCTGGTG 60.674 55.000 0.00 0.00 0.00 4.17
89 90 3.195698 GCCGTCCGAATCTGGTGC 61.196 66.667 0.00 0.00 0.00 5.01
90 91 2.511600 CCGTCCGAATCTGGTGCC 60.512 66.667 0.00 0.00 0.00 5.01
91 92 2.579201 CGTCCGAATCTGGTGCCT 59.421 61.111 0.00 0.00 0.00 4.75
92 93 1.079127 CGTCCGAATCTGGTGCCTT 60.079 57.895 0.00 0.00 0.00 4.35
93 94 1.361668 CGTCCGAATCTGGTGCCTTG 61.362 60.000 0.00 0.00 0.00 3.61
94 95 0.321653 GTCCGAATCTGGTGCCTTGT 60.322 55.000 0.00 0.00 0.00 3.16
95 96 0.036388 TCCGAATCTGGTGCCTTGTC 60.036 55.000 0.00 0.00 0.00 3.18
96 97 1.026718 CCGAATCTGGTGCCTTGTCC 61.027 60.000 0.00 0.00 0.00 4.02
97 98 0.321564 CGAATCTGGTGCCTTGTCCA 60.322 55.000 0.00 0.00 0.00 4.02
98 99 1.679944 CGAATCTGGTGCCTTGTCCAT 60.680 52.381 0.00 0.00 33.01 3.41
99 100 1.747355 GAATCTGGTGCCTTGTCCATG 59.253 52.381 0.00 0.00 33.01 3.66
100 101 0.033796 ATCTGGTGCCTTGTCCATGG 60.034 55.000 4.97 4.97 33.01 3.66
101 102 1.679977 CTGGTGCCTTGTCCATGGG 60.680 63.158 13.02 0.00 33.01 4.00
102 103 3.070576 GGTGCCTTGTCCATGGGC 61.071 66.667 10.20 10.20 45.45 5.36
105 106 3.213264 GCCTTGTCCATGGGCATG 58.787 61.111 22.11 22.16 44.69 4.06
114 115 2.496942 CATGGGCATGGTCTTGACC 58.503 57.895 12.54 12.54 45.85 4.02
116 117 4.002797 GGGCATGGTCTTGACCAC 57.997 61.111 22.89 12.24 44.91 4.16
117 118 2.040544 GGGCATGGTCTTGACCACG 61.041 63.158 22.89 16.98 44.91 4.94
118 119 2.690778 GGCATGGTCTTGACCACGC 61.691 63.158 26.54 26.54 46.98 5.34
119 120 1.965930 GCATGGTCTTGACCACGCA 60.966 57.895 28.58 7.81 46.92 5.24
120 121 1.868997 CATGGTCTTGACCACGCAC 59.131 57.895 22.89 0.00 43.37 5.34
121 122 0.603707 CATGGTCTTGACCACGCACT 60.604 55.000 22.89 5.89 43.37 4.40
122 123 0.320771 ATGGTCTTGACCACGCACTC 60.321 55.000 22.89 0.00 43.37 3.51
123 124 1.668151 GGTCTTGACCACGCACTCC 60.668 63.158 14.34 0.00 0.00 3.85
124 125 1.069090 GTCTTGACCACGCACTCCA 59.931 57.895 0.00 0.00 0.00 3.86
125 126 1.069090 TCTTGACCACGCACTCCAC 59.931 57.895 0.00 0.00 0.00 4.02
126 127 1.961277 CTTGACCACGCACTCCACC 60.961 63.158 0.00 0.00 0.00 4.61
127 128 2.383245 CTTGACCACGCACTCCACCT 62.383 60.000 0.00 0.00 0.00 4.00
128 129 2.048127 GACCACGCACTCCACCTC 60.048 66.667 0.00 0.00 0.00 3.85
129 130 2.524394 ACCACGCACTCCACCTCT 60.524 61.111 0.00 0.00 0.00 3.69
130 131 2.100879 GACCACGCACTCCACCTCTT 62.101 60.000 0.00 0.00 0.00 2.85
131 132 1.374758 CCACGCACTCCACCTCTTC 60.375 63.158 0.00 0.00 0.00 2.87
132 133 1.374758 CACGCACTCCACCTCTTCC 60.375 63.158 0.00 0.00 0.00 3.46
133 134 2.125912 CGCACTCCACCTCTTCCG 60.126 66.667 0.00 0.00 0.00 4.30
134 135 2.932234 CGCACTCCACCTCTTCCGT 61.932 63.158 0.00 0.00 0.00 4.69
135 136 1.079750 GCACTCCACCTCTTCCGTC 60.080 63.158 0.00 0.00 0.00 4.79
136 137 1.816863 GCACTCCACCTCTTCCGTCA 61.817 60.000 0.00 0.00 0.00 4.35
137 138 0.244994 CACTCCACCTCTTCCGTCAG 59.755 60.000 0.00 0.00 0.00 3.51
138 139 0.900647 ACTCCACCTCTTCCGTCAGG 60.901 60.000 0.00 0.00 39.46 3.86
139 140 0.612174 CTCCACCTCTTCCGTCAGGA 60.612 60.000 0.00 0.00 46.75 3.86
147 148 2.747686 TCCGTCAGGAAAGGCACC 59.252 61.111 0.00 0.00 45.12 5.01
148 149 1.841556 TCCGTCAGGAAAGGCACCT 60.842 57.895 0.00 0.00 45.12 4.00
149 150 1.376037 CCGTCAGGAAAGGCACCTC 60.376 63.158 0.00 0.00 41.02 3.85
150 151 1.674057 CGTCAGGAAAGGCACCTCT 59.326 57.895 0.00 0.00 35.35 3.69
151 152 0.895530 CGTCAGGAAAGGCACCTCTA 59.104 55.000 0.00 0.00 35.35 2.43
152 153 1.275291 CGTCAGGAAAGGCACCTCTAA 59.725 52.381 0.00 0.00 35.35 2.10
153 154 2.675317 CGTCAGGAAAGGCACCTCTAAG 60.675 54.545 0.00 0.00 35.35 2.18
154 155 2.303311 GTCAGGAAAGGCACCTCTAAGT 59.697 50.000 0.00 0.00 35.35 2.24
155 156 2.303022 TCAGGAAAGGCACCTCTAAGTG 59.697 50.000 0.00 0.00 40.88 3.16
166 167 4.192317 CACCTCTAAGTGCAATAAGTCCC 58.808 47.826 0.00 0.00 0.00 4.46
167 168 3.118738 ACCTCTAAGTGCAATAAGTCCCG 60.119 47.826 0.00 0.00 0.00 5.14
168 169 3.458189 CTCTAAGTGCAATAAGTCCCGG 58.542 50.000 0.00 0.00 0.00 5.73
169 170 1.940613 CTAAGTGCAATAAGTCCCGGC 59.059 52.381 0.00 0.00 0.00 6.13
170 171 1.024579 AAGTGCAATAAGTCCCGGCG 61.025 55.000 0.00 0.00 0.00 6.46
171 172 1.448893 GTGCAATAAGTCCCGGCGA 60.449 57.895 9.30 0.00 0.00 5.54
172 173 1.153449 TGCAATAAGTCCCGGCGAG 60.153 57.895 9.30 0.00 0.00 5.03
173 174 1.887707 GCAATAAGTCCCGGCGAGG 60.888 63.158 9.30 8.47 40.63 4.63
182 183 3.154473 CCGGCGAGGGAGATCCAA 61.154 66.667 9.30 0.00 38.24 3.53
183 184 2.107141 CGGCGAGGGAGATCCAAC 59.893 66.667 0.00 0.00 38.24 3.77
184 185 2.427245 CGGCGAGGGAGATCCAACT 61.427 63.158 0.00 0.00 38.24 3.16
185 186 1.443828 GGCGAGGGAGATCCAACTC 59.556 63.158 0.47 0.00 38.24 3.01
186 187 1.330655 GGCGAGGGAGATCCAACTCA 61.331 60.000 0.47 0.00 38.51 3.41
187 188 0.755686 GCGAGGGAGATCCAACTCAT 59.244 55.000 0.47 0.00 38.51 2.90
188 189 1.270041 GCGAGGGAGATCCAACTCATC 60.270 57.143 0.47 0.00 38.51 2.92
189 190 1.342819 CGAGGGAGATCCAACTCATCC 59.657 57.143 0.47 0.00 38.51 3.51
190 191 2.402564 GAGGGAGATCCAACTCATCCA 58.597 52.381 0.47 0.00 38.51 3.41
191 192 2.774234 GAGGGAGATCCAACTCATCCAA 59.226 50.000 0.47 0.00 38.51 3.53
192 193 2.507471 AGGGAGATCCAACTCATCCAAC 59.493 50.000 0.47 0.00 38.51 3.77
193 194 2.239654 GGGAGATCCAACTCATCCAACA 59.760 50.000 0.47 0.00 38.51 3.33
194 195 3.117738 GGGAGATCCAACTCATCCAACAT 60.118 47.826 0.47 0.00 38.51 2.71
195 196 4.103153 GGGAGATCCAACTCATCCAACATA 59.897 45.833 0.47 0.00 38.51 2.29
196 197 5.397899 GGGAGATCCAACTCATCCAACATAA 60.398 44.000 0.47 0.00 38.51 1.90
197 198 5.762218 GGAGATCCAACTCATCCAACATAAG 59.238 44.000 0.00 0.00 38.51 1.73
198 199 6.408548 GGAGATCCAACTCATCCAACATAAGA 60.409 42.308 0.00 0.00 38.51 2.10
199 200 6.590068 AGATCCAACTCATCCAACATAAGAG 58.410 40.000 0.00 0.00 0.00 2.85
200 201 5.762179 TCCAACTCATCCAACATAAGAGT 57.238 39.130 0.00 0.00 40.99 3.24
201 202 5.491070 TCCAACTCATCCAACATAAGAGTG 58.509 41.667 0.00 0.00 39.33 3.51
202 203 5.013079 TCCAACTCATCCAACATAAGAGTGT 59.987 40.000 0.00 0.00 39.33 3.55
203 204 5.122869 CCAACTCATCCAACATAAGAGTGTG 59.877 44.000 0.00 0.00 39.33 3.82
204 205 4.256920 ACTCATCCAACATAAGAGTGTGC 58.743 43.478 0.00 0.00 38.08 4.57
205 206 4.256110 CTCATCCAACATAAGAGTGTGCA 58.744 43.478 0.00 0.00 31.49 4.57
206 207 4.002982 TCATCCAACATAAGAGTGTGCAC 58.997 43.478 10.75 10.75 31.49 4.57
207 208 2.778299 TCCAACATAAGAGTGTGCACC 58.222 47.619 15.69 5.76 31.49 5.01
208 209 1.812571 CCAACATAAGAGTGTGCACCC 59.187 52.381 15.69 1.68 31.49 4.61
209 210 1.464608 CAACATAAGAGTGTGCACCCG 59.535 52.381 15.69 0.00 31.49 5.28
210 211 0.673644 ACATAAGAGTGTGCACCCGC 60.674 55.000 15.69 4.29 39.24 6.13
211 212 0.391661 CATAAGAGTGTGCACCCGCT 60.392 55.000 15.69 7.14 39.64 5.52
212 213 0.391661 ATAAGAGTGTGCACCCGCTG 60.392 55.000 15.69 0.00 39.64 5.18
213 214 1.754380 TAAGAGTGTGCACCCGCTGT 61.754 55.000 15.69 5.71 39.64 4.40
214 215 2.591715 GAGTGTGCACCCGCTGTT 60.592 61.111 15.69 0.00 39.64 3.16
215 216 2.591715 AGTGTGCACCCGCTGTTC 60.592 61.111 15.69 0.00 39.64 3.18
216 217 2.899838 GTGTGCACCCGCTGTTCA 60.900 61.111 15.69 0.00 39.64 3.18
217 218 2.899838 TGTGCACCCGCTGTTCAC 60.900 61.111 15.69 0.34 40.93 3.18
218 219 2.899838 GTGCACCCGCTGTTCACA 60.900 61.111 5.22 0.00 40.35 3.58
219 220 2.124529 TGCACCCGCTGTTCACAA 60.125 55.556 0.00 0.00 39.64 3.33
220 221 2.331451 GCACCCGCTGTTCACAAC 59.669 61.111 0.00 0.00 34.30 3.32
221 222 2.186826 GCACCCGCTGTTCACAACT 61.187 57.895 0.00 0.00 34.30 3.16
222 223 1.724582 GCACCCGCTGTTCACAACTT 61.725 55.000 0.00 0.00 34.30 2.66
223 224 0.307760 CACCCGCTGTTCACAACTTC 59.692 55.000 0.00 0.00 0.00 3.01
224 225 0.818040 ACCCGCTGTTCACAACTTCC 60.818 55.000 0.00 0.00 0.00 3.46
225 226 0.817634 CCCGCTGTTCACAACTTCCA 60.818 55.000 0.00 0.00 0.00 3.53
226 227 1.021202 CCGCTGTTCACAACTTCCAA 58.979 50.000 0.00 0.00 0.00 3.53
227 228 1.403679 CCGCTGTTCACAACTTCCAAA 59.596 47.619 0.00 0.00 0.00 3.28
228 229 2.159310 CCGCTGTTCACAACTTCCAAAA 60.159 45.455 0.00 0.00 0.00 2.44
229 230 3.108144 CGCTGTTCACAACTTCCAAAAG 58.892 45.455 0.00 0.00 38.54 2.27
230 231 2.860136 GCTGTTCACAACTTCCAAAAGC 59.140 45.455 0.00 0.00 35.81 3.51
231 232 3.447742 CTGTTCACAACTTCCAAAAGCC 58.552 45.455 0.00 0.00 35.81 4.35
232 233 3.096092 TGTTCACAACTTCCAAAAGCCT 58.904 40.909 0.00 0.00 35.81 4.58
233 234 3.119173 TGTTCACAACTTCCAAAAGCCTG 60.119 43.478 0.00 0.00 35.81 4.85
234 235 1.408702 TCACAACTTCCAAAAGCCTGC 59.591 47.619 0.00 0.00 35.81 4.85
235 236 0.752658 ACAACTTCCAAAAGCCTGCC 59.247 50.000 0.00 0.00 35.81 4.85
236 237 0.033920 CAACTTCCAAAAGCCTGCCC 59.966 55.000 0.00 0.00 35.81 5.36
237 238 0.398381 AACTTCCAAAAGCCTGCCCA 60.398 50.000 0.00 0.00 35.81 5.36
238 239 0.178924 ACTTCCAAAAGCCTGCCCAT 60.179 50.000 0.00 0.00 35.81 4.00
239 240 1.077005 ACTTCCAAAAGCCTGCCCATA 59.923 47.619 0.00 0.00 35.81 2.74
240 241 1.753073 CTTCCAAAAGCCTGCCCATAG 59.247 52.381 0.00 0.00 0.00 2.23
241 242 0.704076 TCCAAAAGCCTGCCCATAGT 59.296 50.000 0.00 0.00 0.00 2.12
242 243 1.919654 TCCAAAAGCCTGCCCATAGTA 59.080 47.619 0.00 0.00 0.00 1.82
243 244 2.024414 CCAAAAGCCTGCCCATAGTAC 58.976 52.381 0.00 0.00 0.00 2.73
244 245 2.357154 CCAAAAGCCTGCCCATAGTACT 60.357 50.000 0.00 0.00 0.00 2.73
245 246 3.356290 CAAAAGCCTGCCCATAGTACTT 58.644 45.455 0.00 0.00 0.00 2.24
246 247 2.717639 AAGCCTGCCCATAGTACTTG 57.282 50.000 0.00 0.00 0.00 3.16
247 248 0.839946 AGCCTGCCCATAGTACTTGG 59.160 55.000 0.00 8.79 0.00 3.61
397 400 9.310449 AGTTTGTTTAGTCTATCTACTCCTTCA 57.690 33.333 0.00 0.00 0.00 3.02
490 493 3.570975 AGTGCAGATTCACTCATTTTGCA 59.429 39.130 0.00 0.00 43.28 4.08
500 503 4.998033 TCACTCATTTTGCACCGTATGTAA 59.002 37.500 0.00 0.00 0.00 2.41
503 506 5.880332 ACTCATTTTGCACCGTATGTAATCT 59.120 36.000 0.00 0.00 32.44 2.40
568 571 7.720074 GGGGAGTATAAAGTCTATTTTTGAGGG 59.280 40.741 0.00 0.00 0.00 4.30
569 572 8.491958 GGGAGTATAAAGTCTATTTTTGAGGGA 58.508 37.037 0.00 0.00 0.00 4.20
603 610 2.993899 AGACAACCTCGCGAAGTTATTG 59.006 45.455 21.78 13.70 0.00 1.90
640 647 4.682021 ACAGGGATGAAGGGAAAATCTT 57.318 40.909 0.00 0.00 0.00 2.40
649 656 4.044571 TGAAGGGAAAATCTTCAGGGTGAT 59.955 41.667 2.80 0.00 43.70 3.06
965 3310 1.896465 CACGAACCTTCCTCTCCTTCT 59.104 52.381 0.00 0.00 0.00 2.85
1245 3592 1.280421 AGGTTTCTGATGCAGGAGGAC 59.720 52.381 0.00 0.00 31.51 3.85
1287 3634 2.797278 GGACGGGATCAGCGTGGAT 61.797 63.158 0.00 0.00 0.00 3.41
1296 3643 2.370281 TCAGCGTGGATGAGTTCTTC 57.630 50.000 0.00 0.00 0.00 2.87
1311 3658 2.126618 TTCGACGCGCTGTTCGAT 60.127 55.556 21.29 0.00 41.67 3.59
1314 3661 2.809601 GACGCGCTGTTCGATGGT 60.810 61.111 5.73 0.00 41.67 3.55
1316 3663 3.853330 CGCGCTGTTCGATGGTGG 61.853 66.667 5.56 0.00 41.67 4.61
1317 3664 3.499737 GCGCTGTTCGATGGTGGG 61.500 66.667 0.00 0.00 41.67 4.61
1391 3738 0.861155 GATGGGGACTCTAGGAGGGA 59.139 60.000 0.00 0.00 33.35 4.20
1398 3745 2.245287 GGACTCTAGGAGGGAGGAAGAA 59.755 54.545 0.00 0.00 35.34 2.52
1518 3866 6.310224 GGTATGCAATTTTGTTATTTGTCGCT 59.690 34.615 0.00 0.00 0.00 4.93
1594 3942 6.537301 TGCCCGTAGAACTTAGAATTTACATG 59.463 38.462 0.00 0.00 0.00 3.21
1595 3943 6.759827 GCCCGTAGAACTTAGAATTTACATGA 59.240 38.462 0.00 0.00 0.00 3.07
1670 4018 8.574737 CCTAATCCGTAGTACTACTAAAATGCT 58.425 37.037 26.36 8.76 31.62 3.79
1727 4085 4.023622 TGTTGTTCCGTATGGTGAATGTTG 60.024 41.667 0.00 0.00 36.30 3.33
1758 4117 8.934023 TGGAAGAAATTTTAAGTACATGAGGT 57.066 30.769 0.00 0.00 0.00 3.85
1759 4118 8.792633 TGGAAGAAATTTTAAGTACATGAGGTG 58.207 33.333 0.00 0.00 0.00 4.00
1760 4119 9.010029 GGAAGAAATTTTAAGTACATGAGGTGA 57.990 33.333 0.00 0.00 0.00 4.02
1762 4121 8.567285 AGAAATTTTAAGTACATGAGGTGAGG 57.433 34.615 0.00 0.00 0.00 3.86
1763 4122 8.164070 AGAAATTTTAAGTACATGAGGTGAGGT 58.836 33.333 0.00 0.00 0.00 3.85
1806 4170 5.501715 CATAACTTATCGGTTGACATGTGC 58.498 41.667 1.15 0.00 0.00 4.57
1807 4171 3.052455 ACTTATCGGTTGACATGTGCA 57.948 42.857 1.15 0.00 0.00 4.57
1808 4172 3.609853 ACTTATCGGTTGACATGTGCAT 58.390 40.909 1.15 0.00 0.00 3.96
1809 4173 4.765273 ACTTATCGGTTGACATGTGCATA 58.235 39.130 1.15 0.00 0.00 3.14
1839 4206 6.013842 GCTAAAAGAGCCACAATTTGTACT 57.986 37.500 0.86 2.95 46.41 2.73
1840 4207 6.086871 GCTAAAAGAGCCACAATTTGTACTC 58.913 40.000 17.72 17.72 46.41 2.59
1841 4208 5.453567 AAAAGAGCCACAATTTGTACTCC 57.546 39.130 20.10 9.08 34.88 3.85
1842 4209 3.073274 AGAGCCACAATTTGTACTCCC 57.927 47.619 20.10 5.68 34.88 4.30
1843 4210 2.644798 AGAGCCACAATTTGTACTCCCT 59.355 45.455 20.10 7.47 34.88 4.20
1844 4211 3.010420 GAGCCACAATTTGTACTCCCTC 58.990 50.000 15.79 8.45 30.72 4.30
1845 4212 2.092323 GCCACAATTTGTACTCCCTCC 58.908 52.381 0.86 0.00 0.00 4.30
1846 4213 2.356135 CCACAATTTGTACTCCCTCCG 58.644 52.381 0.86 0.00 0.00 4.63
1847 4214 2.290071 CCACAATTTGTACTCCCTCCGT 60.290 50.000 0.86 0.00 0.00 4.69
1848 4215 3.000727 CACAATTTGTACTCCCTCCGTC 58.999 50.000 0.86 0.00 0.00 4.79
1849 4216 2.027469 ACAATTTGTACTCCCTCCGTCC 60.027 50.000 0.00 0.00 0.00 4.79
1850 4217 0.822164 ATTTGTACTCCCTCCGTCCG 59.178 55.000 0.00 0.00 0.00 4.79
1851 4218 1.252904 TTTGTACTCCCTCCGTCCGG 61.253 60.000 0.00 0.00 0.00 5.14
1852 4219 2.141011 TTGTACTCCCTCCGTCCGGA 62.141 60.000 0.00 0.00 42.90 5.14
1853 4220 1.379044 GTACTCCCTCCGTCCGGAA 60.379 63.158 5.23 0.00 44.66 4.30
1854 4221 0.967380 GTACTCCCTCCGTCCGGAAA 60.967 60.000 5.23 0.00 44.66 3.13
1855 4222 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
1856 4223 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
1857 4224 1.339097 CTCCCTCCGTCCGGAAATAT 58.661 55.000 5.23 0.00 44.66 1.28
1858 4225 1.692519 CTCCCTCCGTCCGGAAATATT 59.307 52.381 5.23 0.00 44.66 1.28
1859 4226 2.104281 CTCCCTCCGTCCGGAAATATTT 59.896 50.000 5.23 0.00 44.66 1.40
1860 4227 2.158871 TCCCTCCGTCCGGAAATATTTG 60.159 50.000 5.23 0.00 44.66 2.32
1861 4228 2.420967 CCCTCCGTCCGGAAATATTTGT 60.421 50.000 5.23 0.00 44.66 2.83
1862 4229 2.870411 CCTCCGTCCGGAAATATTTGTC 59.130 50.000 5.23 0.00 44.66 3.18
1863 4230 3.527533 CTCCGTCCGGAAATATTTGTCA 58.472 45.455 5.23 0.00 44.66 3.58
1864 4231 4.127171 CTCCGTCCGGAAATATTTGTCAT 58.873 43.478 5.23 0.00 44.66 3.06
1865 4232 4.124238 TCCGTCCGGAAATATTTGTCATC 58.876 43.478 5.23 0.00 42.05 2.92
1866 4233 3.874543 CCGTCCGGAAATATTTGTCATCA 59.125 43.478 5.23 0.00 37.50 3.07
1867 4234 4.334203 CCGTCCGGAAATATTTGTCATCAA 59.666 41.667 5.23 0.00 37.50 2.57
1868 4235 5.163703 CCGTCCGGAAATATTTGTCATCAAA 60.164 40.000 5.23 0.00 41.49 2.69
1869 4236 6.318628 CGTCCGGAAATATTTGTCATCAAAA 58.681 36.000 5.23 0.00 44.97 2.44
1870 4237 6.972328 CGTCCGGAAATATTTGTCATCAAAAT 59.028 34.615 5.23 0.00 44.97 1.82
1871 4238 7.044117 CGTCCGGAAATATTTGTCATCAAAATG 60.044 37.037 5.23 0.00 44.97 2.32
1872 4239 7.973388 GTCCGGAAATATTTGTCATCAAAATGA 59.027 33.333 5.23 0.00 44.97 2.57
1873 4240 8.526978 TCCGGAAATATTTGTCATCAAAATGAA 58.473 29.630 0.00 0.00 44.97 2.57
1874 4241 9.316730 CCGGAAATATTTGTCATCAAAATGAAT 57.683 29.630 5.17 0.00 44.97 2.57
1939 4306 7.737972 TCTCTTTTTATCCATTTTGACGACA 57.262 32.000 0.00 0.00 0.00 4.35
1940 4307 8.160521 TCTCTTTTTATCCATTTTGACGACAA 57.839 30.769 0.00 0.00 0.00 3.18
1941 4308 8.289618 TCTCTTTTTATCCATTTTGACGACAAG 58.710 33.333 0.00 0.00 37.32 3.16
1942 4309 7.936584 TCTTTTTATCCATTTTGACGACAAGT 58.063 30.769 0.00 0.00 37.32 3.16
1943 4310 9.058174 TCTTTTTATCCATTTTGACGACAAGTA 57.942 29.630 0.00 0.00 37.32 2.24
1944 4311 9.840427 CTTTTTATCCATTTTGACGACAAGTAT 57.160 29.630 0.00 0.00 37.32 2.12
1948 4315 9.834628 TTATCCATTTTGACGACAAGTATTTTC 57.165 29.630 0.00 0.00 37.32 2.29
1949 4316 6.367421 TCCATTTTGACGACAAGTATTTTCG 58.633 36.000 0.00 0.00 37.32 3.46
1950 4317 5.567534 CCATTTTGACGACAAGTATTTTCGG 59.432 40.000 0.00 0.00 37.32 4.30
1951 4318 5.987777 TTTTGACGACAAGTATTTTCGGA 57.012 34.783 0.00 0.00 37.32 4.55
1952 4319 4.977741 TTGACGACAAGTATTTTCGGAC 57.022 40.909 0.00 0.00 37.07 4.79
1953 4320 2.981805 TGACGACAAGTATTTTCGGACG 59.018 45.455 0.00 0.00 37.07 4.79
1954 4321 2.331194 ACGACAAGTATTTTCGGACGG 58.669 47.619 0.00 0.00 37.07 4.79
1955 4322 2.030007 ACGACAAGTATTTTCGGACGGA 60.030 45.455 0.00 0.00 37.07 4.69
1956 4323 2.597305 CGACAAGTATTTTCGGACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1957 4324 2.928116 GACAAGTATTTTCGGACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1958 4325 2.277084 CAAGTATTTTCGGACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
1959 4326 1.856629 AGTATTTTCGGACGGAGGGA 58.143 50.000 0.00 0.00 0.00 4.20
1982 4349 5.721232 AGTACATCTCTTGGTTAAACGGAG 58.279 41.667 6.89 6.89 0.00 4.63
1984 4351 4.566987 ACATCTCTTGGTTAAACGGAGTC 58.433 43.478 11.39 0.00 45.00 3.36
1992 4359 8.454570 TCTTGGTTAAACGGAGTCTTATTTTT 57.545 30.769 0.00 0.00 45.00 1.94
2017 4384 7.672983 TCTTGCTGAAAGAATCGTCTTAAAT 57.327 32.000 0.00 0.00 43.59 1.40
2020 4387 7.433708 TGCTGAAAGAATCGTCTTAAATTCA 57.566 32.000 1.54 0.00 43.59 2.57
2130 4504 5.393896 GGACGTATAGCCTCTTACAAGTTGT 60.394 44.000 14.05 14.05 0.00 3.32
2131 4505 5.408356 ACGTATAGCCTCTTACAAGTTGTG 58.592 41.667 18.90 2.80 0.00 3.33
2133 4508 5.288712 CGTATAGCCTCTTACAAGTTGTGTG 59.711 44.000 18.90 10.71 41.89 3.82
2142 4517 3.848272 ACAAGTTGTGTGTTTGGTGAG 57.152 42.857 7.96 0.00 39.72 3.51
2146 4521 4.173036 AGTTGTGTGTTTGGTGAGTTTG 57.827 40.909 0.00 0.00 0.00 2.93
2181 4556 4.168675 AGGAATAGGGATTCTGCCATGAAA 59.831 41.667 0.00 0.00 41.21 2.69
2184 4559 3.675348 AGGGATTCTGCCATGAAATCA 57.325 42.857 0.00 0.00 0.00 2.57
2238 4613 3.764434 TGGAGACGAAGAGCAAGTATCTT 59.236 43.478 0.00 0.00 39.69 2.40
2244 4619 2.593346 AGAGCAAGTATCTTGAGGCG 57.407 50.000 12.77 0.00 0.00 5.52
2382 4757 3.114065 CGTACTTTCGGGTAAGATGCTC 58.886 50.000 0.00 0.00 0.00 4.26
2512 4887 0.593128 AACGTTGGCTTGTGCTCATC 59.407 50.000 0.00 0.00 39.59 2.92
2594 4969 7.041098 GCACTCAGAAAATCTAGTTTCCTTTGA 60.041 37.037 2.97 1.17 38.10 2.69
2910 5297 2.167487 CAGAGACCTTGGAGCTTCTACC 59.833 54.545 0.00 0.00 0.00 3.18
2957 5344 3.509442 AGGGAGAGGATCAAGCTAGATG 58.491 50.000 0.00 0.00 37.82 2.90
2999 5386 0.173481 CGCTTGCTAGACTAGTGCCA 59.827 55.000 11.15 0.00 0.00 4.92
3049 5436 9.582431 GTAGTGTAGTTAGCAATGAATGTCTAA 57.418 33.333 0.00 0.00 0.00 2.10
3111 5499 3.781079 ATCTTCTGCTCTCTCTGTTCG 57.219 47.619 0.00 0.00 0.00 3.95
3113 5501 0.109551 TTCTGCTCTCTCTGTTCGCG 60.110 55.000 0.00 0.00 0.00 5.87
3119 5507 2.128035 CTCTCTCTGTTCGCGTTGTTT 58.872 47.619 5.77 0.00 0.00 2.83
3127 5515 4.688879 TCTGTTCGCGTTGTTTTATGATCT 59.311 37.500 5.77 0.00 0.00 2.75
3178 5566 4.433805 GGCGTTCTGTGTTACTTTATGTCG 60.434 45.833 0.00 0.00 0.00 4.35
3179 5567 4.433805 GCGTTCTGTGTTACTTTATGTCGG 60.434 45.833 0.00 0.00 0.00 4.79
3181 5569 3.592059 TCTGTGTTACTTTATGTCGGGC 58.408 45.455 0.00 0.00 0.00 6.13
3182 5570 3.007074 TCTGTGTTACTTTATGTCGGGCA 59.993 43.478 0.00 0.00 0.00 5.36
3183 5571 3.068560 TGTGTTACTTTATGTCGGGCAC 58.931 45.455 0.00 0.00 0.00 5.01
3187 5586 2.386661 ACTTTATGTCGGGCACTCTG 57.613 50.000 0.00 0.00 0.00 3.35
3219 5667 6.881065 TCTCTCTGGGTTTATGTCAAATTCAG 59.119 38.462 0.00 0.00 0.00 3.02
3237 5685 5.462530 TTCAGACCATAGAAAGTTCACGA 57.537 39.130 0.00 0.00 0.00 4.35
3333 5849 5.303589 AGTGCAGTACTGTAGTGTTTTCCTA 59.696 40.000 23.44 1.15 38.49 2.94
3377 5895 8.958119 TCTCCTATATGGTTCATTTTGTGTAC 57.042 34.615 0.00 0.00 37.07 2.90
3378 5896 8.768397 TCTCCTATATGGTTCATTTTGTGTACT 58.232 33.333 0.00 0.00 37.07 2.73
3379 5897 8.958119 TCCTATATGGTTCATTTTGTGTACTC 57.042 34.615 0.00 0.00 37.07 2.59
3381 5899 9.342308 CCTATATGGTTCATTTTGTGTACTCAT 57.658 33.333 0.00 0.00 0.00 2.90
3385 5903 8.592105 ATGGTTCATTTTGTGTACTCATTTTG 57.408 30.769 0.00 0.00 0.00 2.44
3386 5904 7.551585 TGGTTCATTTTGTGTACTCATTTTGT 58.448 30.769 0.00 0.00 0.00 2.83
3387 5905 8.037758 TGGTTCATTTTGTGTACTCATTTTGTT 58.962 29.630 0.00 0.00 0.00 2.83
3415 5939 8.722342 TCTTGCAAGAAAAATACAATAACGAC 57.278 30.769 26.61 0.00 30.73 4.34
3478 6004 8.084684 GGCATGTTTATTAGATTCATTTCCCTC 58.915 37.037 0.00 0.00 0.00 4.30
3515 6041 4.722526 TCTCATTCAAAGGTCTTTCCCA 57.277 40.909 0.00 0.00 36.75 4.37
3519 6045 5.147032 TCATTCAAAGGTCTTTCCCATGTT 58.853 37.500 0.00 0.00 36.75 2.71
3587 6123 3.588210 AAGCCTAGTCCCTCTCTCTAC 57.412 52.381 0.00 0.00 0.00 2.59
3594 6130 5.300792 CCTAGTCCCTCTCTCTACATTTCAC 59.699 48.000 0.00 0.00 0.00 3.18
3686 6222 8.485578 TTCAAACTTTAATGTTCCTACCCAAT 57.514 30.769 7.15 0.00 0.00 3.16
3917 6453 9.166173 CCTCAAGAAATTCATCAACATACTACA 57.834 33.333 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.119280 TCATGAAAGCATTGGACTGCATG 60.119 43.478 0.00 0.00 44.77 4.06
1 2 3.093814 TCATGAAAGCATTGGACTGCAT 58.906 40.909 0.00 0.00 44.77 3.96
2 3 2.490509 CTCATGAAAGCATTGGACTGCA 59.509 45.455 0.00 0.00 44.77 4.41
3 4 2.751259 TCTCATGAAAGCATTGGACTGC 59.249 45.455 0.00 0.00 42.62 4.40
4 5 4.036498 GGATCTCATGAAAGCATTGGACTG 59.964 45.833 0.00 0.00 30.68 3.51
5 6 4.205587 GGATCTCATGAAAGCATTGGACT 58.794 43.478 0.00 0.00 30.68 3.85
6 7 3.003068 CGGATCTCATGAAAGCATTGGAC 59.997 47.826 0.00 0.00 30.68 4.02
7 8 3.208594 CGGATCTCATGAAAGCATTGGA 58.791 45.455 0.00 0.00 30.68 3.53
8 9 2.287427 GCGGATCTCATGAAAGCATTGG 60.287 50.000 0.00 0.00 30.68 3.16
9 10 2.287427 GGCGGATCTCATGAAAGCATTG 60.287 50.000 0.00 0.00 30.68 2.82
10 11 1.952296 GGCGGATCTCATGAAAGCATT 59.048 47.619 0.00 0.00 30.68 3.56
11 12 1.142465 AGGCGGATCTCATGAAAGCAT 59.858 47.619 0.00 0.00 34.29 3.79
12 13 0.543277 AGGCGGATCTCATGAAAGCA 59.457 50.000 0.00 0.00 0.00 3.91
13 14 1.332997 CAAGGCGGATCTCATGAAAGC 59.667 52.381 0.00 0.00 0.00 3.51
14 15 2.910199 TCAAGGCGGATCTCATGAAAG 58.090 47.619 0.00 0.00 0.00 2.62
15 16 3.565764 ATCAAGGCGGATCTCATGAAA 57.434 42.857 0.00 0.00 0.00 2.69
16 17 4.687901 TTATCAAGGCGGATCTCATGAA 57.312 40.909 0.00 0.00 0.00 2.57
17 18 4.040829 ACATTATCAAGGCGGATCTCATGA 59.959 41.667 0.00 0.00 0.00 3.07
18 19 4.153655 CACATTATCAAGGCGGATCTCATG 59.846 45.833 0.00 0.00 0.00 3.07
19 20 4.321718 CACATTATCAAGGCGGATCTCAT 58.678 43.478 0.00 0.00 0.00 2.90
20 21 3.732212 CACATTATCAAGGCGGATCTCA 58.268 45.455 0.00 0.00 0.00 3.27
21 22 2.481952 GCACATTATCAAGGCGGATCTC 59.518 50.000 0.00 0.00 0.00 2.75
22 23 2.498167 GCACATTATCAAGGCGGATCT 58.502 47.619 0.00 0.00 0.00 2.75
23 24 1.537202 GGCACATTATCAAGGCGGATC 59.463 52.381 0.00 0.00 0.00 3.36
24 25 1.133823 TGGCACATTATCAAGGCGGAT 60.134 47.619 0.61 0.61 0.00 4.18
25 26 0.254462 TGGCACATTATCAAGGCGGA 59.746 50.000 0.00 0.00 0.00 5.54
26 27 1.102154 TTGGCACATTATCAAGGCGG 58.898 50.000 0.00 0.00 39.30 6.13
27 28 1.472082 TGTTGGCACATTATCAAGGCG 59.528 47.619 0.00 0.00 39.30 5.52
28 29 2.879826 GTGTTGGCACATTATCAAGGC 58.120 47.619 0.00 0.00 44.64 4.35
42 43 0.802494 GGTTCTATGCCGTGTGTTGG 59.198 55.000 0.00 0.00 0.00 3.77
43 44 1.732259 GAGGTTCTATGCCGTGTGTTG 59.268 52.381 0.00 0.00 0.00 3.33
44 45 1.338769 GGAGGTTCTATGCCGTGTGTT 60.339 52.381 0.00 0.00 0.00 3.32
45 46 0.249398 GGAGGTTCTATGCCGTGTGT 59.751 55.000 0.00 0.00 0.00 3.72
46 47 0.462047 GGGAGGTTCTATGCCGTGTG 60.462 60.000 0.00 0.00 0.00 3.82
47 48 0.907704 TGGGAGGTTCTATGCCGTGT 60.908 55.000 0.00 0.00 0.00 4.49
48 49 0.179073 CTGGGAGGTTCTATGCCGTG 60.179 60.000 0.00 0.00 0.00 4.94
49 50 0.617820 ACTGGGAGGTTCTATGCCGT 60.618 55.000 0.00 0.00 0.00 5.68
50 51 1.410004 TACTGGGAGGTTCTATGCCG 58.590 55.000 0.00 0.00 0.00 5.69
51 52 3.809905 CTTTACTGGGAGGTTCTATGCC 58.190 50.000 0.00 0.00 0.00 4.40
52 53 3.206964 GCTTTACTGGGAGGTTCTATGC 58.793 50.000 0.00 0.00 0.00 3.14
53 54 3.741388 CGGCTTTACTGGGAGGTTCTATG 60.741 52.174 0.00 0.00 0.00 2.23
54 55 2.434702 CGGCTTTACTGGGAGGTTCTAT 59.565 50.000 0.00 0.00 0.00 1.98
55 56 1.829222 CGGCTTTACTGGGAGGTTCTA 59.171 52.381 0.00 0.00 0.00 2.10
56 57 0.613777 CGGCTTTACTGGGAGGTTCT 59.386 55.000 0.00 0.00 0.00 3.01
57 58 0.323957 ACGGCTTTACTGGGAGGTTC 59.676 55.000 0.00 0.00 0.00 3.62
58 59 0.323957 GACGGCTTTACTGGGAGGTT 59.676 55.000 0.00 0.00 0.00 3.50
59 60 1.551019 GGACGGCTTTACTGGGAGGT 61.551 60.000 0.00 0.00 0.00 3.85
60 61 1.221021 GGACGGCTTTACTGGGAGG 59.779 63.158 0.00 0.00 0.00 4.30
61 62 1.153628 CGGACGGCTTTACTGGGAG 60.154 63.158 0.00 0.00 0.00 4.30
62 63 1.186917 TTCGGACGGCTTTACTGGGA 61.187 55.000 0.00 0.00 0.00 4.37
63 64 0.107848 ATTCGGACGGCTTTACTGGG 60.108 55.000 0.00 0.00 0.00 4.45
64 65 1.134788 AGATTCGGACGGCTTTACTGG 60.135 52.381 0.00 0.00 0.00 4.00
65 66 1.927174 CAGATTCGGACGGCTTTACTG 59.073 52.381 0.00 0.00 0.00 2.74
66 67 1.134788 CCAGATTCGGACGGCTTTACT 60.135 52.381 0.00 0.00 0.00 2.24
67 68 1.287425 CCAGATTCGGACGGCTTTAC 58.713 55.000 0.00 0.00 0.00 2.01
68 69 0.899720 ACCAGATTCGGACGGCTTTA 59.100 50.000 0.00 0.00 0.00 1.85
69 70 0.673644 CACCAGATTCGGACGGCTTT 60.674 55.000 0.00 0.00 0.00 3.51
70 71 1.079127 CACCAGATTCGGACGGCTT 60.079 57.895 0.00 0.00 0.00 4.35
71 72 2.579201 CACCAGATTCGGACGGCT 59.421 61.111 0.00 0.00 0.00 5.52
72 73 3.195698 GCACCAGATTCGGACGGC 61.196 66.667 2.26 0.00 0.00 5.68
73 74 2.511600 GGCACCAGATTCGGACGG 60.512 66.667 2.26 0.00 0.00 4.79
74 75 1.079127 AAGGCACCAGATTCGGACG 60.079 57.895 2.26 0.00 0.00 4.79
75 76 0.321653 ACAAGGCACCAGATTCGGAC 60.322 55.000 2.26 0.00 0.00 4.79
76 77 0.036388 GACAAGGCACCAGATTCGGA 60.036 55.000 2.26 0.00 0.00 4.55
77 78 1.026718 GGACAAGGCACCAGATTCGG 61.027 60.000 0.00 0.00 0.00 4.30
78 79 0.321564 TGGACAAGGCACCAGATTCG 60.322 55.000 0.00 0.00 0.00 3.34
79 80 1.747355 CATGGACAAGGCACCAGATTC 59.253 52.381 0.00 0.00 39.62 2.52
80 81 1.617804 CCATGGACAAGGCACCAGATT 60.618 52.381 5.56 0.00 39.62 2.40
81 82 0.033796 CCATGGACAAGGCACCAGAT 60.034 55.000 5.56 0.00 39.62 2.90
82 83 1.379916 CCATGGACAAGGCACCAGA 59.620 57.895 5.56 0.00 39.62 3.86
83 84 1.679977 CCCATGGACAAGGCACCAG 60.680 63.158 15.22 0.00 39.62 4.00
84 85 2.440147 CCCATGGACAAGGCACCA 59.560 61.111 15.22 0.00 40.57 4.17
85 86 3.070576 GCCCATGGACAAGGCACC 61.071 66.667 15.22 0.00 46.34 5.01
106 107 1.069090 TGGAGTGCGTGGTCAAGAC 59.931 57.895 0.00 0.00 0.00 3.01
107 108 1.069090 GTGGAGTGCGTGGTCAAGA 59.931 57.895 0.00 0.00 0.00 3.02
108 109 1.961277 GGTGGAGTGCGTGGTCAAG 60.961 63.158 0.00 0.00 0.00 3.02
109 110 2.110213 GGTGGAGTGCGTGGTCAA 59.890 61.111 0.00 0.00 0.00 3.18
110 111 2.842462 AGGTGGAGTGCGTGGTCA 60.842 61.111 0.00 0.00 0.00 4.02
111 112 2.048127 GAGGTGGAGTGCGTGGTC 60.048 66.667 0.00 0.00 0.00 4.02
112 113 2.100879 GAAGAGGTGGAGTGCGTGGT 62.101 60.000 0.00 0.00 0.00 4.16
113 114 1.374758 GAAGAGGTGGAGTGCGTGG 60.375 63.158 0.00 0.00 0.00 4.94
114 115 1.374758 GGAAGAGGTGGAGTGCGTG 60.375 63.158 0.00 0.00 0.00 5.34
115 116 2.932234 CGGAAGAGGTGGAGTGCGT 61.932 63.158 0.00 0.00 0.00 5.24
116 117 2.125912 CGGAAGAGGTGGAGTGCG 60.126 66.667 0.00 0.00 0.00 5.34
117 118 1.079750 GACGGAAGAGGTGGAGTGC 60.080 63.158 0.00 0.00 0.00 4.40
118 119 0.244994 CTGACGGAAGAGGTGGAGTG 59.755 60.000 0.00 0.00 0.00 3.51
119 120 0.900647 CCTGACGGAAGAGGTGGAGT 60.901 60.000 0.00 0.00 0.00 3.85
120 121 0.612174 TCCTGACGGAAGAGGTGGAG 60.612 60.000 0.00 0.00 36.03 3.86
121 122 0.178944 TTCCTGACGGAAGAGGTGGA 60.179 55.000 0.00 0.00 44.28 4.02
122 123 2.362242 TTCCTGACGGAAGAGGTGG 58.638 57.895 0.00 0.00 44.28 4.61
130 131 1.827399 GAGGTGCCTTTCCTGACGGA 61.827 60.000 0.00 0.00 37.60 4.69
131 132 1.376037 GAGGTGCCTTTCCTGACGG 60.376 63.158 0.00 0.00 35.20 4.79
132 133 0.895530 TAGAGGTGCCTTTCCTGACG 59.104 55.000 0.00 0.00 35.20 4.35
133 134 2.303311 ACTTAGAGGTGCCTTTCCTGAC 59.697 50.000 0.00 0.00 35.20 3.51
134 135 2.303022 CACTTAGAGGTGCCTTTCCTGA 59.697 50.000 0.00 0.00 35.20 3.86
135 136 2.704572 CACTTAGAGGTGCCTTTCCTG 58.295 52.381 0.00 0.00 35.20 3.86
144 145 4.192317 GGGACTTATTGCACTTAGAGGTG 58.808 47.826 0.00 0.00 39.91 4.00
145 146 3.118738 CGGGACTTATTGCACTTAGAGGT 60.119 47.826 0.00 0.00 0.00 3.85
146 147 3.458189 CGGGACTTATTGCACTTAGAGG 58.542 50.000 0.00 0.00 0.00 3.69
147 148 3.458189 CCGGGACTTATTGCACTTAGAG 58.542 50.000 0.00 0.00 0.00 2.43
148 149 2.419574 GCCGGGACTTATTGCACTTAGA 60.420 50.000 2.18 0.00 0.00 2.10
149 150 1.940613 GCCGGGACTTATTGCACTTAG 59.059 52.381 2.18 0.00 0.00 2.18
150 151 1.741055 CGCCGGGACTTATTGCACTTA 60.741 52.381 2.18 0.00 0.00 2.24
151 152 1.024579 CGCCGGGACTTATTGCACTT 61.025 55.000 2.18 0.00 0.00 3.16
152 153 1.449601 CGCCGGGACTTATTGCACT 60.450 57.895 2.18 0.00 0.00 4.40
153 154 1.429148 CTCGCCGGGACTTATTGCAC 61.429 60.000 2.18 0.00 0.00 4.57
154 155 1.153449 CTCGCCGGGACTTATTGCA 60.153 57.895 2.18 0.00 0.00 4.08
155 156 1.887707 CCTCGCCGGGACTTATTGC 60.888 63.158 2.18 0.00 0.00 3.56
156 157 4.438346 CCTCGCCGGGACTTATTG 57.562 61.111 2.18 0.00 0.00 1.90
165 166 3.154473 TTGGATCTCCCTCGCCGG 61.154 66.667 0.00 0.00 35.38 6.13
166 167 2.107141 GTTGGATCTCCCTCGCCG 59.893 66.667 0.00 0.00 35.38 6.46
167 168 1.330655 TGAGTTGGATCTCCCTCGCC 61.331 60.000 0.00 0.00 35.38 5.54
168 169 0.755686 ATGAGTTGGATCTCCCTCGC 59.244 55.000 0.00 0.00 35.38 5.03
169 170 1.342819 GGATGAGTTGGATCTCCCTCG 59.657 57.143 0.00 0.00 35.38 4.63
170 171 2.402564 TGGATGAGTTGGATCTCCCTC 58.597 52.381 0.00 0.00 35.38 4.30
171 172 2.507471 GTTGGATGAGTTGGATCTCCCT 59.493 50.000 0.00 0.00 35.38 4.20
172 173 2.239654 TGTTGGATGAGTTGGATCTCCC 59.760 50.000 0.00 0.00 33.93 4.30
173 174 3.634397 TGTTGGATGAGTTGGATCTCC 57.366 47.619 0.00 0.00 33.93 3.71
174 175 6.586344 TCTTATGTTGGATGAGTTGGATCTC 58.414 40.000 0.00 0.00 35.28 2.75
175 176 6.157645 ACTCTTATGTTGGATGAGTTGGATCT 59.842 38.462 0.00 0.00 34.78 2.75
176 177 6.259608 CACTCTTATGTTGGATGAGTTGGATC 59.740 42.308 0.00 0.00 36.05 3.36
177 178 6.118170 CACTCTTATGTTGGATGAGTTGGAT 58.882 40.000 0.00 0.00 36.05 3.41
178 179 5.013079 ACACTCTTATGTTGGATGAGTTGGA 59.987 40.000 0.00 0.00 36.05 3.53
179 180 5.122869 CACACTCTTATGTTGGATGAGTTGG 59.877 44.000 0.00 0.00 36.05 3.77
180 181 5.391310 GCACACTCTTATGTTGGATGAGTTG 60.391 44.000 0.00 0.00 36.05 3.16
181 182 4.697352 GCACACTCTTATGTTGGATGAGTT 59.303 41.667 0.00 0.00 36.05 3.01
182 183 4.256920 GCACACTCTTATGTTGGATGAGT 58.743 43.478 0.00 0.00 38.36 3.41
183 184 4.093998 GTGCACACTCTTATGTTGGATGAG 59.906 45.833 13.17 0.00 0.00 2.90
184 185 4.002982 GTGCACACTCTTATGTTGGATGA 58.997 43.478 13.17 0.00 0.00 2.92
185 186 3.127548 GGTGCACACTCTTATGTTGGATG 59.872 47.826 20.43 0.00 0.00 3.51
186 187 3.347216 GGTGCACACTCTTATGTTGGAT 58.653 45.455 20.43 0.00 0.00 3.41
187 188 2.552155 GGGTGCACACTCTTATGTTGGA 60.552 50.000 20.43 0.00 0.00 3.53
188 189 1.812571 GGGTGCACACTCTTATGTTGG 59.187 52.381 20.43 0.00 0.00 3.77
189 190 1.464608 CGGGTGCACACTCTTATGTTG 59.535 52.381 18.70 0.00 0.00 3.33
190 191 1.808411 CGGGTGCACACTCTTATGTT 58.192 50.000 18.70 0.00 0.00 2.71
191 192 0.673644 GCGGGTGCACACTCTTATGT 60.674 55.000 18.70 0.00 42.15 2.29
192 193 0.391661 AGCGGGTGCACACTCTTATG 60.392 55.000 18.70 0.69 46.23 1.90
193 194 0.391661 CAGCGGGTGCACACTCTTAT 60.392 55.000 18.70 0.00 46.23 1.73
194 195 1.005037 CAGCGGGTGCACACTCTTA 60.005 57.895 18.70 0.00 46.23 2.10
195 196 2.281070 CAGCGGGTGCACACTCTT 60.281 61.111 18.70 0.00 46.23 2.85
196 197 2.996168 GAACAGCGGGTGCACACTCT 62.996 60.000 18.70 12.49 46.23 3.24
197 198 2.591715 AACAGCGGGTGCACACTC 60.592 61.111 18.70 9.76 46.23 3.51
198 199 2.591715 GAACAGCGGGTGCACACT 60.592 61.111 18.70 9.03 46.23 3.55
199 200 2.899838 TGAACAGCGGGTGCACAC 60.900 61.111 20.43 15.50 46.23 3.82
202 203 2.124529 TTGTGAACAGCGGGTGCA 60.125 55.556 7.17 0.00 46.23 4.57
203 204 1.724582 AAGTTGTGAACAGCGGGTGC 61.725 55.000 7.17 0.00 43.24 5.01
204 205 0.307760 GAAGTTGTGAACAGCGGGTG 59.692 55.000 5.50 5.50 32.04 4.61
205 206 0.818040 GGAAGTTGTGAACAGCGGGT 60.818 55.000 0.00 0.00 32.04 5.28
206 207 0.817634 TGGAAGTTGTGAACAGCGGG 60.818 55.000 0.00 0.00 32.04 6.13
207 208 1.021202 TTGGAAGTTGTGAACAGCGG 58.979 50.000 0.00 0.00 32.04 5.52
208 209 2.842208 TTTGGAAGTTGTGAACAGCG 57.158 45.000 0.00 0.00 32.04 5.18
209 210 2.860136 GCTTTTGGAAGTTGTGAACAGC 59.140 45.455 0.00 0.00 35.25 4.40
210 211 3.131046 AGGCTTTTGGAAGTTGTGAACAG 59.869 43.478 0.00 0.00 35.25 3.16
211 212 3.096092 AGGCTTTTGGAAGTTGTGAACA 58.904 40.909 0.00 0.00 35.25 3.18
212 213 3.447742 CAGGCTTTTGGAAGTTGTGAAC 58.552 45.455 0.00 0.00 35.25 3.18
213 214 2.159114 GCAGGCTTTTGGAAGTTGTGAA 60.159 45.455 0.00 0.00 35.25 3.18
214 215 1.408702 GCAGGCTTTTGGAAGTTGTGA 59.591 47.619 0.00 0.00 35.25 3.58
215 216 1.538849 GGCAGGCTTTTGGAAGTTGTG 60.539 52.381 0.00 0.00 35.25 3.33
216 217 0.752658 GGCAGGCTTTTGGAAGTTGT 59.247 50.000 0.00 0.00 35.25 3.32
217 218 0.033920 GGGCAGGCTTTTGGAAGTTG 59.966 55.000 0.00 0.00 35.25 3.16
218 219 0.398381 TGGGCAGGCTTTTGGAAGTT 60.398 50.000 0.00 0.00 35.25 2.66
219 220 0.178924 ATGGGCAGGCTTTTGGAAGT 60.179 50.000 0.00 0.00 35.25 3.01
220 221 1.753073 CTATGGGCAGGCTTTTGGAAG 59.247 52.381 0.00 0.00 35.92 3.46
221 222 1.077005 ACTATGGGCAGGCTTTTGGAA 59.923 47.619 0.00 0.00 0.00 3.53
222 223 0.704076 ACTATGGGCAGGCTTTTGGA 59.296 50.000 0.00 0.00 0.00 3.53
223 224 2.024414 GTACTATGGGCAGGCTTTTGG 58.976 52.381 0.00 0.00 0.00 3.28
224 225 3.004752 AGTACTATGGGCAGGCTTTTG 57.995 47.619 0.00 0.00 0.00 2.44
225 226 3.356290 CAAGTACTATGGGCAGGCTTTT 58.644 45.455 0.00 0.00 0.00 2.27
226 227 2.357154 CCAAGTACTATGGGCAGGCTTT 60.357 50.000 13.36 0.00 34.15 3.51
227 228 1.212935 CCAAGTACTATGGGCAGGCTT 59.787 52.381 13.36 0.00 34.15 4.35
228 229 0.839946 CCAAGTACTATGGGCAGGCT 59.160 55.000 13.36 0.00 34.15 4.58
229 230 3.403936 CCAAGTACTATGGGCAGGC 57.596 57.895 13.36 0.00 34.15 4.85
235 236 6.767524 TTTACATTTGCCCAAGTACTATGG 57.232 37.500 13.95 13.95 37.71 2.74
239 240 9.869757 GATTATTTTTACATTTGCCCAAGTACT 57.130 29.630 0.00 0.00 0.00 2.73
240 241 9.646427 TGATTATTTTTACATTTGCCCAAGTAC 57.354 29.630 0.00 0.00 0.00 2.73
242 243 9.737844 AATGATTATTTTTACATTTGCCCAAGT 57.262 25.926 0.00 0.00 30.31 3.16
243 244 9.991388 CAATGATTATTTTTACATTTGCCCAAG 57.009 29.630 0.00 0.00 31.85 3.61
244 245 9.730705 TCAATGATTATTTTTACATTTGCCCAA 57.269 25.926 0.00 0.00 31.85 4.12
245 246 9.730705 TTCAATGATTATTTTTACATTTGCCCA 57.269 25.926 0.00 0.00 31.85 5.36
490 493 8.880991 AGATTCCACTATAGATTACATACGGT 57.119 34.615 6.78 0.00 0.00 4.83
603 610 5.957842 TCCCTGTAAACATTGTGACAATC 57.042 39.130 8.03 0.00 0.00 2.67
640 647 5.439721 CCATGTTTGATTAGATCACCCTGA 58.560 41.667 0.00 0.00 39.39 3.86
649 656 1.340502 TGGCCGCCATGTTTGATTAGA 60.341 47.619 8.43 0.00 0.00 2.10
762 3107 8.906867 ACTTTGAAAAGATTCATGACTCTCAAA 58.093 29.630 15.24 17.65 44.70 2.69
828 3173 1.906333 CGTTGGGTTTTCCTGGGGG 60.906 63.158 0.00 0.00 40.46 5.40
1287 3634 1.729484 CAGCGCGTCGAAGAACTCA 60.729 57.895 8.43 0.00 39.69 3.41
1296 3643 3.902063 CCATCGAACAGCGCGTCG 61.902 66.667 20.44 20.44 40.61 5.12
1391 3738 0.842467 CACCTCCACCCCTTCTTCCT 60.842 60.000 0.00 0.00 0.00 3.36
1398 3745 2.529389 GTCACCACCTCCACCCCT 60.529 66.667 0.00 0.00 0.00 4.79
1449 3796 3.066190 TCGCCATCGACCTCCGTT 61.066 61.111 0.00 0.00 40.21 4.44
1594 3942 7.390162 CCTCCAGATAATTGATCCTTAAGCTTC 59.610 40.741 0.00 0.00 34.80 3.86
1595 3943 7.230027 CCTCCAGATAATTGATCCTTAAGCTT 58.770 38.462 3.48 3.48 34.80 3.74
1727 4085 9.860898 ATGTACTTAAAATTTCTTCCAATGAGC 57.139 29.630 0.00 0.00 0.00 4.26
1791 4155 2.682856 GGTTATGCACATGTCAACCGAT 59.317 45.455 0.00 0.00 30.20 4.18
1829 4196 2.629051 GGACGGAGGGAGTACAAATTG 58.371 52.381 0.00 0.00 0.00 2.32
1831 4198 0.822164 CGGACGGAGGGAGTACAAAT 59.178 55.000 0.00 0.00 0.00 2.32
1835 4202 0.967380 TTTCCGGACGGAGGGAGTAC 60.967 60.000 13.64 0.00 46.06 2.73
1836 4203 0.032813 ATTTCCGGACGGAGGGAGTA 60.033 55.000 13.64 0.00 46.06 2.59
1837 4204 0.032813 TATTTCCGGACGGAGGGAGT 60.033 55.000 13.64 0.00 46.06 3.85
1838 4205 1.339097 ATATTTCCGGACGGAGGGAG 58.661 55.000 13.64 0.00 46.06 4.30
1839 4206 1.797320 AATATTTCCGGACGGAGGGA 58.203 50.000 13.64 4.95 46.06 4.20
1840 4207 2.218603 CAAATATTTCCGGACGGAGGG 58.781 52.381 13.64 0.00 46.06 4.30
1841 4208 2.870411 GACAAATATTTCCGGACGGAGG 59.130 50.000 13.64 0.00 46.06 4.30
1842 4209 3.527533 TGACAAATATTTCCGGACGGAG 58.472 45.455 13.64 3.15 46.06 4.63
1843 4210 3.613494 TGACAAATATTTCCGGACGGA 57.387 42.857 1.83 9.76 43.52 4.69
1844 4211 3.874543 TGATGACAAATATTTCCGGACGG 59.125 43.478 1.83 3.96 0.00 4.79
1845 4212 5.478233 TTGATGACAAATATTTCCGGACG 57.522 39.130 1.83 0.00 32.73 4.79
1846 4213 7.973388 TCATTTTGATGACAAATATTTCCGGAC 59.027 33.333 1.83 0.00 43.99 4.79
1847 4214 8.060931 TCATTTTGATGACAAATATTTCCGGA 57.939 30.769 0.00 0.00 43.99 5.14
1848 4215 8.700722 TTCATTTTGATGACAAATATTTCCGG 57.299 30.769 0.00 0.00 43.99 5.14
1913 4280 9.443323 TGTCGTCAAAATGGATAAAAAGAGATA 57.557 29.630 0.00 0.00 0.00 1.98
1914 4281 8.335532 TGTCGTCAAAATGGATAAAAAGAGAT 57.664 30.769 0.00 0.00 0.00 2.75
1915 4282 7.737972 TGTCGTCAAAATGGATAAAAAGAGA 57.262 32.000 0.00 0.00 0.00 3.10
1916 4283 8.076178 ACTTGTCGTCAAAATGGATAAAAAGAG 58.924 33.333 0.00 0.00 32.87 2.85
1917 4284 7.936584 ACTTGTCGTCAAAATGGATAAAAAGA 58.063 30.769 0.00 0.00 32.87 2.52
1918 4285 9.840427 ATACTTGTCGTCAAAATGGATAAAAAG 57.160 29.630 0.00 0.00 32.87 2.27
1922 4289 9.834628 GAAAATACTTGTCGTCAAAATGGATAA 57.165 29.630 0.00 0.00 32.87 1.75
1923 4290 8.172484 CGAAAATACTTGTCGTCAAAATGGATA 58.828 33.333 0.00 0.00 32.87 2.59
1924 4291 7.021196 CGAAAATACTTGTCGTCAAAATGGAT 58.979 34.615 0.00 0.00 32.87 3.41
1925 4292 6.367421 CGAAAATACTTGTCGTCAAAATGGA 58.633 36.000 0.00 0.00 32.87 3.41
1926 4293 5.567534 CCGAAAATACTTGTCGTCAAAATGG 59.432 40.000 0.00 0.00 32.87 3.16
1927 4294 6.302313 GTCCGAAAATACTTGTCGTCAAAATG 59.698 38.462 0.00 0.00 32.87 2.32
1928 4295 6.368213 GTCCGAAAATACTTGTCGTCAAAAT 58.632 36.000 0.00 0.00 32.87 1.82
1929 4296 5.556758 CGTCCGAAAATACTTGTCGTCAAAA 60.557 40.000 0.00 0.00 32.87 2.44
1930 4297 4.084952 CGTCCGAAAATACTTGTCGTCAAA 60.085 41.667 0.00 0.00 32.87 2.69
1931 4298 3.426191 CGTCCGAAAATACTTGTCGTCAA 59.574 43.478 0.00 0.00 32.93 3.18
1932 4299 2.981805 CGTCCGAAAATACTTGTCGTCA 59.018 45.455 0.00 0.00 32.93 4.35
1933 4300 2.343544 CCGTCCGAAAATACTTGTCGTC 59.656 50.000 0.00 0.00 32.93 4.20
1934 4301 2.030007 TCCGTCCGAAAATACTTGTCGT 60.030 45.455 0.00 0.00 32.93 4.34
1935 4302 2.597305 CTCCGTCCGAAAATACTTGTCG 59.403 50.000 0.00 0.00 34.58 4.35
1936 4303 2.928116 CCTCCGTCCGAAAATACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
1937 4304 2.354403 CCCTCCGTCCGAAAATACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
1938 4305 2.093869 TCCCTCCGTCCGAAAATACTTG 60.094 50.000 0.00 0.00 0.00 3.16
1939 4306 2.167900 CTCCCTCCGTCCGAAAATACTT 59.832 50.000 0.00 0.00 0.00 2.24
1940 4307 1.755380 CTCCCTCCGTCCGAAAATACT 59.245 52.381 0.00 0.00 0.00 2.12
1941 4308 1.479730 ACTCCCTCCGTCCGAAAATAC 59.520 52.381 0.00 0.00 0.00 1.89
1942 4309 1.856629 ACTCCCTCCGTCCGAAAATA 58.143 50.000 0.00 0.00 0.00 1.40
1943 4310 1.479730 GTACTCCCTCCGTCCGAAAAT 59.520 52.381 0.00 0.00 0.00 1.82
1944 4311 0.890683 GTACTCCCTCCGTCCGAAAA 59.109 55.000 0.00 0.00 0.00 2.29
1945 4312 0.251297 TGTACTCCCTCCGTCCGAAA 60.251 55.000 0.00 0.00 0.00 3.46
1946 4313 0.033796 ATGTACTCCCTCCGTCCGAA 60.034 55.000 0.00 0.00 0.00 4.30
1947 4314 0.465097 GATGTACTCCCTCCGTCCGA 60.465 60.000 0.00 0.00 0.00 4.55
1948 4315 0.465824 AGATGTACTCCCTCCGTCCG 60.466 60.000 0.00 0.00 0.00 4.79
1949 4316 1.133730 AGAGATGTACTCCCTCCGTCC 60.134 57.143 0.00 0.00 45.96 4.79
1950 4317 2.351706 AGAGATGTACTCCCTCCGTC 57.648 55.000 0.00 0.00 45.96 4.79
1951 4318 2.379972 CAAGAGATGTACTCCCTCCGT 58.620 52.381 0.00 0.00 45.96 4.69
1952 4319 1.683917 CCAAGAGATGTACTCCCTCCG 59.316 57.143 0.00 0.00 45.96 4.63
1953 4320 2.753247 ACCAAGAGATGTACTCCCTCC 58.247 52.381 0.00 0.00 45.96 4.30
1954 4321 5.934402 TTAACCAAGAGATGTACTCCCTC 57.066 43.478 0.00 0.00 45.96 4.30
1955 4322 5.337330 CGTTTAACCAAGAGATGTACTCCCT 60.337 44.000 0.00 0.00 45.96 4.20
1956 4323 4.868734 CGTTTAACCAAGAGATGTACTCCC 59.131 45.833 0.00 0.00 45.96 4.30
1957 4324 4.868734 CCGTTTAACCAAGAGATGTACTCC 59.131 45.833 0.00 0.00 45.96 3.85
1958 4325 5.717119 TCCGTTTAACCAAGAGATGTACTC 58.283 41.667 0.00 0.00 45.22 2.59
1959 4326 5.245526 ACTCCGTTTAACCAAGAGATGTACT 59.754 40.000 10.19 0.00 0.00 2.73
2059 4426 5.690865 ACAAACATCCCTACTTCTCAAACA 58.309 37.500 0.00 0.00 0.00 2.83
2130 4504 2.752354 CCTGACAAACTCACCAAACACA 59.248 45.455 0.00 0.00 0.00 3.72
2131 4505 2.479560 GCCTGACAAACTCACCAAACAC 60.480 50.000 0.00 0.00 0.00 3.32
2133 4508 1.748493 TGCCTGACAAACTCACCAAAC 59.252 47.619 0.00 0.00 0.00 2.93
2146 4521 3.117888 TCCCTATTCCTCATTTGCCTGAC 60.118 47.826 0.00 0.00 0.00 3.51
2181 4556 3.796111 TGACTTCTTCCTCTCCCTTGAT 58.204 45.455 0.00 0.00 0.00 2.57
2184 4559 5.130145 CACATATGACTTCTTCCTCTCCCTT 59.870 44.000 10.38 0.00 0.00 3.95
2244 4619 4.803426 CTGAGGCGGCGACACTCC 62.803 72.222 18.30 3.42 34.16 3.85
2910 5297 4.113815 TCCAGCGCCTTCCATGGG 62.114 66.667 13.02 0.00 33.45 4.00
2999 5386 3.412386 ACTGGAAACTTGCGAATAAGCT 58.588 40.909 0.00 0.00 38.13 3.74
3049 5436 3.441572 GTGGCAGCAAGAGAACACATATT 59.558 43.478 0.00 0.00 0.00 1.28
3050 5437 3.012518 GTGGCAGCAAGAGAACACATAT 58.987 45.455 0.00 0.00 0.00 1.78
3111 5499 8.604035 TCTGATTAGAAGATCATAAAACAACGC 58.396 33.333 0.00 0.00 35.62 4.84
3178 5566 0.107945 GAGATGGACACAGAGTGCCC 60.108 60.000 0.00 0.00 36.61 5.36
3179 5567 0.901124 AGAGATGGACACAGAGTGCC 59.099 55.000 0.00 0.95 37.86 5.01
3181 5569 2.166050 CCAGAGAGATGGACACAGAGTG 59.834 54.545 0.00 0.00 43.57 3.51
3182 5570 2.455557 CCAGAGAGATGGACACAGAGT 58.544 52.381 0.00 0.00 43.57 3.24
3183 5571 1.755959 CCCAGAGAGATGGACACAGAG 59.244 57.143 0.00 0.00 43.57 3.35
3187 5586 4.080863 ACATAAACCCAGAGAGATGGACAC 60.081 45.833 0.00 0.00 43.57 3.67
3192 5591 7.337689 TGAATTTGACATAAACCCAGAGAGATG 59.662 37.037 0.00 0.00 0.00 2.90
3219 5667 4.806330 TCACTCGTGAACTTTCTATGGTC 58.194 43.478 0.00 0.00 36.53 4.02
3237 5685 2.945668 GCCTTTCACTTGTGACTTCACT 59.054 45.455 10.63 0.00 46.55 3.41
3333 5849 5.084519 GGAGATTTTCCTAACCCCAAAAGT 58.915 41.667 0.00 0.00 43.16 2.66
3377 5895 7.703298 TTTCTTGCAAGATCAACAAAATGAG 57.297 32.000 28.89 0.00 34.49 2.90
3378 5896 8.489990 TTTTTCTTGCAAGATCAACAAAATGA 57.510 26.923 28.89 7.45 34.49 2.57
3381 5899 9.376075 TGTATTTTTCTTGCAAGATCAACAAAA 57.624 25.926 28.89 27.31 34.49 2.44
3383 5901 8.939201 TTGTATTTTTCTTGCAAGATCAACAA 57.061 26.923 28.89 25.98 34.49 2.83
3387 5905 9.340695 CGTTATTGTATTTTTCTTGCAAGATCA 57.659 29.630 28.89 16.35 34.49 2.92
3415 5939 5.199024 TGGAACTGGTGATCAACAAAATG 57.801 39.130 15.67 5.51 0.00 2.32
3478 6004 6.824553 TGAATGAGAAGAGGATCATTACCAG 58.175 40.000 0.00 0.00 44.18 4.00
3487 6013 6.385766 AAGACCTTTGAATGAGAAGAGGAT 57.614 37.500 0.00 0.00 0.00 3.24
3515 6041 9.653287 TCAGTAATCTTTCGTCATAAGAAACAT 57.347 29.630 0.00 0.00 35.43 2.71
3611 6147 6.613755 AATAGGGTTCGTGTGCATAAATAC 57.386 37.500 0.00 0.00 0.00 1.89
3724 6260 9.974980 TCATCTAATATAACACGTGCAATTCTA 57.025 29.630 17.22 0.18 0.00 2.10
3917 6453 7.147672 GGGATATTTTGAGGATTCATTGTTGGT 60.148 37.037 0.00 0.00 32.27 3.67


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.