Multiple sequence alignment - TraesCS7B01G298900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G298900 chr7B 100.000 3411 0 0 1 3411 535696447 535699857 0.000000e+00 6300.0
1 TraesCS7B01G298900 chr7B 95.970 670 25 2 2743 3411 691262316 691261648 0.000000e+00 1086.0
2 TraesCS7B01G298900 chr7B 95.659 668 26 3 2745 3411 498967644 498966979 0.000000e+00 1070.0
3 TraesCS7B01G298900 chr7B 87.640 178 22 0 1212 1389 535491584 535491761 1.240000e-49 207.0
4 TraesCS7B01G298900 chr7B 87.079 178 23 0 1212 1389 535636753 535636930 5.770000e-48 202.0
5 TraesCS7B01G298900 chr7B 92.500 120 4 4 2546 2662 533308116 533308233 2.110000e-37 167.0
6 TraesCS7B01G298900 chr7B 90.741 54 5 0 1026 1079 55067097 55067044 4.720000e-09 73.1
7 TraesCS7B01G298900 chr7B 88.889 54 6 0 1026 1079 55035843 55035790 2.200000e-07 67.6
8 TraesCS7B01G298900 chr7A 87.424 1821 144 50 981 2729 577206100 577207907 0.000000e+00 2015.0
9 TraesCS7B01G298900 chr7A 91.639 299 13 4 1 287 577205106 577205404 1.470000e-108 403.0
10 TraesCS7B01G298900 chr7A 90.625 192 12 3 792 977 577205873 577206064 2.030000e-62 250.0
11 TraesCS7B01G298900 chr7A 85.475 179 24 2 1212 1389 574684726 574684903 5.810000e-43 185.0
12 TraesCS7B01G298900 chr7A 90.741 54 5 0 1026 1079 102290377 102290324 4.720000e-09 73.1
13 TraesCS7B01G298900 chr7D 87.342 1580 132 41 976 2511 507302664 507304219 0.000000e+00 1748.0
14 TraesCS7B01G298900 chr7D 96.257 187 5 2 1 185 507248589 507248775 4.280000e-79 305.0
15 TraesCS7B01G298900 chr7D 88.936 235 23 3 2497 2728 507304241 507304475 1.550000e-73 287.0
16 TraesCS7B01G298900 chr7D 91.414 198 11 3 792 983 507302441 507302638 2.020000e-67 267.0
17 TraesCS7B01G298900 chr7D 89.266 177 19 0 1212 1388 506818005 506818181 4.430000e-54 222.0
18 TraesCS7B01G298900 chr7D 78.591 369 56 14 1031 1389 507230409 507230764 4.430000e-54 222.0
19 TraesCS7B01G298900 chr7D 88.021 192 17 4 185 376 507302166 507302351 4.430000e-54 222.0
20 TraesCS7B01G298900 chr7D 90.446 157 15 0 1233 1389 506901486 506901642 1.240000e-49 207.0
21 TraesCS7B01G298900 chr7D 90.741 54 5 0 1026 1079 99824213 99824160 4.720000e-09 73.1
22 TraesCS7B01G298900 chr1B 96.562 669 21 2 2744 3411 158539621 158538954 0.000000e+00 1107.0
23 TraesCS7B01G298900 chr1A 95.827 671 26 2 2742 3411 449829489 449828820 0.000000e+00 1083.0
24 TraesCS7B01G298900 chr4B 95.815 669 26 2 2744 3411 399194744 399195411 0.000000e+00 1079.0
25 TraesCS7B01G298900 chr6B 95.067 669 30 3 2744 3411 213481118 213480452 0.000000e+00 1050.0
26 TraesCS7B01G298900 chr6B 96.223 609 21 2 2744 3351 157767547 157766940 0.000000e+00 996.0
27 TraesCS7B01G298900 chr3B 94.776 670 34 1 2743 3411 621959530 621960199 0.000000e+00 1042.0
28 TraesCS7B01G298900 chr3B 94.595 111 4 2 2554 2662 44812765 44812875 1.630000e-38 171.0
29 TraesCS7B01G298900 chr3B 94.595 111 4 2 2554 2662 44842230 44842340 1.630000e-38 171.0
30 TraesCS7B01G298900 chr3B 94.495 109 3 3 2556 2662 717990900 717990793 7.570000e-37 165.0
31 TraesCS7B01G298900 chr3B 93.636 110 5 2 2559 2668 44789074 44789181 2.720000e-36 163.0
32 TraesCS7B01G298900 chr4A 89.104 670 67 5 2744 3410 451745773 451745107 0.000000e+00 828.0
33 TraesCS7B01G298900 chr3D 93.043 115 7 1 2555 2668 26467755 26467869 2.110000e-37 167.0
34 TraesCS7B01G298900 chr3D 78.968 252 29 16 499 748 385467664 385467893 2.120000e-32 150.0
35 TraesCS7B01G298900 chr3A 90.476 126 8 3 2542 2665 678383226 678383103 2.720000e-36 163.0
36 TraesCS7B01G298900 chr5A 77.083 192 39 5 1213 1401 479397435 479397246 4.660000e-19 106.0
37 TraesCS7B01G298900 chr2B 77.922 154 21 6 548 699 147465121 147465263 2.180000e-12 84.2
38 TraesCS7B01G298900 chr2B 75.333 150 33 4 600 747 426483139 426482992 6.110000e-08 69.4
39 TraesCS7B01G298900 chr2D 75.000 156 35 4 567 720 359634943 359635096 6.110000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G298900 chr7B 535696447 535699857 3410 False 6300.000000 6300 100.00000 1 3411 1 chr7B.!!$F4 3410
1 TraesCS7B01G298900 chr7B 691261648 691262316 668 True 1086.000000 1086 95.97000 2743 3411 1 chr7B.!!$R4 668
2 TraesCS7B01G298900 chr7B 498966979 498967644 665 True 1070.000000 1070 95.65900 2745 3411 1 chr7B.!!$R3 666
3 TraesCS7B01G298900 chr7A 577205106 577207907 2801 False 889.333333 2015 89.89600 1 2729 3 chr7A.!!$F2 2728
4 TraesCS7B01G298900 chr7D 507302166 507304475 2309 False 631.000000 1748 88.92825 185 2728 4 chr7D.!!$F5 2543
5 TraesCS7B01G298900 chr1B 158538954 158539621 667 True 1107.000000 1107 96.56200 2744 3411 1 chr1B.!!$R1 667
6 TraesCS7B01G298900 chr1A 449828820 449829489 669 True 1083.000000 1083 95.82700 2742 3411 1 chr1A.!!$R1 669
7 TraesCS7B01G298900 chr4B 399194744 399195411 667 False 1079.000000 1079 95.81500 2744 3411 1 chr4B.!!$F1 667
8 TraesCS7B01G298900 chr6B 213480452 213481118 666 True 1050.000000 1050 95.06700 2744 3411 1 chr6B.!!$R2 667
9 TraesCS7B01G298900 chr6B 157766940 157767547 607 True 996.000000 996 96.22300 2744 3351 1 chr6B.!!$R1 607
10 TraesCS7B01G298900 chr3B 621959530 621960199 669 False 1042.000000 1042 94.77600 2743 3411 1 chr3B.!!$F4 668
11 TraesCS7B01G298900 chr4A 451745107 451745773 666 True 828.000000 828 89.10400 2744 3410 1 chr4A.!!$R1 666

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
853 1115 0.035881 CTCTGCAGCCTGAGTTGGAA 59.964 55.0 9.47 0.0 33.71 3.53 F
875 1137 0.450583 TCGCGCTACACTTGTCCTAG 59.549 55.0 5.56 0.0 0.00 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2227 2578 0.038892 AAATCGCAACTGCAAGCTGG 60.039 50.0 2.12 0.0 42.21 4.85 R
2430 2800 0.320247 CACTGCCACGCTTCTTCTCT 60.320 55.0 0.00 0.0 0.00 3.10 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 5.352284 TCTCTTTTCTCGGAACATGCTATC 58.648 41.667 0.00 0.00 0.00 2.08
151 152 3.242543 GGTATTCACTGCGCATTTCTCTG 60.243 47.826 12.24 0.00 0.00 3.35
189 201 3.122780 TGCTGTAATCATGTTCGTCAACG 59.877 43.478 0.00 0.00 41.45 4.10
315 539 9.173021 CTTTTCTTTTGGGGAATTTTACACTTT 57.827 29.630 0.00 0.00 0.00 2.66
346 570 1.913317 CTGCTTAGCAATTTTCGGCC 58.087 50.000 8.68 0.00 38.41 6.13
364 588 1.265905 GCCGGAAACAAAACGATGAGT 59.734 47.619 5.05 0.00 0.00 3.41
429 654 9.672086 TGAAACGGATGAAGTTTGTATTTAAAG 57.328 29.630 0.00 0.00 41.32 1.85
430 655 9.124807 GAAACGGATGAAGTTTGTATTTAAAGG 57.875 33.333 0.00 0.00 41.32 3.11
432 657 8.398878 ACGGATGAAGTTTGTATTTAAAGGAA 57.601 30.769 0.00 0.00 0.00 3.36
433 658 8.294577 ACGGATGAAGTTTGTATTTAAAGGAAC 58.705 33.333 0.00 0.00 0.00 3.62
434 659 8.293867 CGGATGAAGTTTGTATTTAAAGGAACA 58.706 33.333 0.00 0.00 0.00 3.18
437 662 9.927668 ATGAAGTTTGTATTTAAAGGAACATGG 57.072 29.630 0.00 0.00 0.00 3.66
443 668 6.872920 TGTATTTAAAGGAACATGGCAATCC 58.127 36.000 8.76 8.76 0.00 3.01
452 677 4.360643 TGGCAATCCAATCAGGGC 57.639 55.556 0.00 0.00 39.99 5.19
453 678 1.699137 TGGCAATCCAATCAGGGCT 59.301 52.632 0.00 0.00 39.99 5.19
454 679 0.925558 TGGCAATCCAATCAGGGCTA 59.074 50.000 0.00 0.00 39.99 3.93
455 680 1.287442 TGGCAATCCAATCAGGGCTAA 59.713 47.619 0.00 0.00 39.99 3.09
456 681 1.683385 GGCAATCCAATCAGGGCTAAC 59.317 52.381 0.00 0.00 38.24 2.34
457 682 2.378038 GCAATCCAATCAGGGCTAACA 58.622 47.619 0.00 0.00 38.24 2.41
458 683 2.961062 GCAATCCAATCAGGGCTAACAT 59.039 45.455 0.00 0.00 38.24 2.71
459 684 3.243636 GCAATCCAATCAGGGCTAACATG 60.244 47.826 0.00 0.00 38.24 3.21
460 685 2.057137 TCCAATCAGGGCTAACATGC 57.943 50.000 0.00 0.00 38.24 4.06
461 686 1.565759 TCCAATCAGGGCTAACATGCT 59.434 47.619 0.00 0.00 38.24 3.79
505 767 7.751768 AGATAAACATCATTAAGCTTAGGGC 57.248 36.000 6.24 0.00 42.19 5.19
506 768 7.290061 AGATAAACATCATTAAGCTTAGGGCA 58.710 34.615 6.24 0.00 44.79 5.36
507 769 7.946776 AGATAAACATCATTAAGCTTAGGGCAT 59.053 33.333 6.24 0.00 44.79 4.40
508 770 5.779529 AACATCATTAAGCTTAGGGCATG 57.220 39.130 6.24 7.79 44.79 4.06
509 771 4.796606 ACATCATTAAGCTTAGGGCATGT 58.203 39.130 6.24 10.49 44.79 3.21
510 772 5.940617 ACATCATTAAGCTTAGGGCATGTA 58.059 37.500 15.42 5.93 44.79 2.29
511 773 6.546484 ACATCATTAAGCTTAGGGCATGTAT 58.454 36.000 15.42 7.36 44.79 2.29
513 775 7.826252 ACATCATTAAGCTTAGGGCATGTATAG 59.174 37.037 15.42 8.25 44.79 1.31
514 776 7.316393 TCATTAAGCTTAGGGCATGTATAGT 57.684 36.000 6.24 0.00 44.79 2.12
515 777 7.745717 TCATTAAGCTTAGGGCATGTATAGTT 58.254 34.615 6.24 0.00 44.79 2.24
516 778 7.661437 TCATTAAGCTTAGGGCATGTATAGTTG 59.339 37.037 6.24 0.00 44.79 3.16
517 779 5.373812 AAGCTTAGGGCATGTATAGTTGT 57.626 39.130 0.00 0.00 44.79 3.32
518 780 5.373812 AGCTTAGGGCATGTATAGTTGTT 57.626 39.130 0.00 0.00 44.79 2.83
519 781 5.126067 AGCTTAGGGCATGTATAGTTGTTG 58.874 41.667 0.00 0.00 44.79 3.33
520 782 5.104527 AGCTTAGGGCATGTATAGTTGTTGA 60.105 40.000 0.00 0.00 44.79 3.18
521 783 5.765182 GCTTAGGGCATGTATAGTTGTTGAT 59.235 40.000 0.00 0.00 41.35 2.57
522 784 6.934645 GCTTAGGGCATGTATAGTTGTTGATA 59.065 38.462 0.00 0.00 41.35 2.15
523 785 7.444183 GCTTAGGGCATGTATAGTTGTTGATAA 59.556 37.037 0.00 0.00 41.35 1.75
524 786 8.902540 TTAGGGCATGTATAGTTGTTGATAAG 57.097 34.615 0.00 0.00 0.00 1.73
525 787 7.136822 AGGGCATGTATAGTTGTTGATAAGA 57.863 36.000 0.00 0.00 0.00 2.10
526 788 6.992715 AGGGCATGTATAGTTGTTGATAAGAC 59.007 38.462 0.00 0.00 0.00 3.01
527 789 6.765989 GGGCATGTATAGTTGTTGATAAGACA 59.234 38.462 0.00 0.00 0.00 3.41
528 790 7.041780 GGGCATGTATAGTTGTTGATAAGACAG 60.042 40.741 0.00 0.00 0.00 3.51
529 791 7.495934 GGCATGTATAGTTGTTGATAAGACAGT 59.504 37.037 0.00 0.00 0.00 3.55
530 792 8.543774 GCATGTATAGTTGTTGATAAGACAGTC 58.456 37.037 0.00 0.00 0.00 3.51
531 793 9.809096 CATGTATAGTTGTTGATAAGACAGTCT 57.191 33.333 0.00 0.00 0.00 3.24
546 808 9.771534 ATAAGACAGTCTTATCTTAATTCAGCC 57.228 33.333 24.76 0.00 44.03 4.85
547 809 7.187824 AGACAGTCTTATCTTAATTCAGCCA 57.812 36.000 0.00 0.00 0.00 4.75
548 810 7.800092 AGACAGTCTTATCTTAATTCAGCCAT 58.200 34.615 0.00 0.00 0.00 4.40
549 811 7.714377 AGACAGTCTTATCTTAATTCAGCCATG 59.286 37.037 0.00 0.00 0.00 3.66
550 812 7.341805 ACAGTCTTATCTTAATTCAGCCATGT 58.658 34.615 0.00 0.00 0.00 3.21
551 813 8.486210 ACAGTCTTATCTTAATTCAGCCATGTA 58.514 33.333 0.00 0.00 0.00 2.29
552 814 9.330063 CAGTCTTATCTTAATTCAGCCATGTAA 57.670 33.333 0.00 0.00 0.00 2.41
562 824 9.639563 TTAATTCAGCCATGTAATCTTAATCCA 57.360 29.630 0.00 0.00 0.00 3.41
563 825 7.756395 ATTCAGCCATGTAATCTTAATCCAG 57.244 36.000 0.00 0.00 0.00 3.86
564 826 6.499106 TCAGCCATGTAATCTTAATCCAGA 57.501 37.500 0.00 0.00 0.00 3.86
565 827 6.291377 TCAGCCATGTAATCTTAATCCAGAC 58.709 40.000 0.00 0.00 0.00 3.51
566 828 6.057533 CAGCCATGTAATCTTAATCCAGACA 58.942 40.000 0.00 0.00 0.00 3.41
567 829 6.017605 CAGCCATGTAATCTTAATCCAGACAC 60.018 42.308 0.00 0.00 0.00 3.67
568 830 5.050091 GCCATGTAATCTTAATCCAGACACG 60.050 44.000 0.00 0.00 0.00 4.49
569 831 6.049149 CCATGTAATCTTAATCCAGACACGT 58.951 40.000 0.00 0.00 0.00 4.49
570 832 7.207383 CCATGTAATCTTAATCCAGACACGTA 58.793 38.462 0.00 0.00 0.00 3.57
571 833 7.709182 CCATGTAATCTTAATCCAGACACGTAA 59.291 37.037 0.00 0.00 0.00 3.18
572 834 9.261180 CATGTAATCTTAATCCAGACACGTAAT 57.739 33.333 0.00 0.00 0.00 1.89
573 835 8.867112 TGTAATCTTAATCCAGACACGTAATC 57.133 34.615 0.00 0.00 0.00 1.75
574 836 8.692710 TGTAATCTTAATCCAGACACGTAATCT 58.307 33.333 0.00 0.00 0.00 2.40
575 837 8.969267 GTAATCTTAATCCAGACACGTAATCTG 58.031 37.037 17.97 17.97 42.79 2.90
582 844 4.639135 CAGACACGTAATCTGGAGATGA 57.361 45.455 17.39 0.00 40.01 2.92
583 845 4.355437 CAGACACGTAATCTGGAGATGAC 58.645 47.826 17.39 0.00 40.01 3.06
584 846 4.017126 AGACACGTAATCTGGAGATGACA 58.983 43.478 5.20 0.00 35.98 3.58
585 847 4.097135 AGACACGTAATCTGGAGATGACAG 59.903 45.833 5.20 0.00 35.98 3.51
587 849 4.462834 ACACGTAATCTGGAGATGACAGAA 59.537 41.667 5.20 0.00 46.89 3.02
588 850 4.800993 CACGTAATCTGGAGATGACAGAAC 59.199 45.833 5.20 0.00 46.89 3.01
589 851 4.462834 ACGTAATCTGGAGATGACAGAACA 59.537 41.667 5.20 0.00 46.89 3.18
590 852 5.047306 ACGTAATCTGGAGATGACAGAACAA 60.047 40.000 5.20 0.00 46.89 2.83
591 853 6.045318 CGTAATCTGGAGATGACAGAACAAT 58.955 40.000 5.20 0.00 46.89 2.71
592 854 7.147897 ACGTAATCTGGAGATGACAGAACAATA 60.148 37.037 5.20 0.00 46.89 1.90
593 855 7.869937 CGTAATCTGGAGATGACAGAACAATAT 59.130 37.037 5.20 0.00 46.89 1.28
594 856 8.986847 GTAATCTGGAGATGACAGAACAATATG 58.013 37.037 0.00 0.00 46.89 1.78
595 857 5.922053 TCTGGAGATGACAGAACAATATGG 58.078 41.667 0.00 0.00 41.66 2.74
596 858 5.426509 TCTGGAGATGACAGAACAATATGGT 59.573 40.000 0.00 0.00 41.66 3.55
597 859 5.430886 TGGAGATGACAGAACAATATGGTG 58.569 41.667 0.00 0.00 0.00 4.17
598 860 5.045651 TGGAGATGACAGAACAATATGGTGT 60.046 40.000 0.00 0.00 0.00 4.16
599 861 6.156083 TGGAGATGACAGAACAATATGGTGTA 59.844 38.462 0.00 0.00 0.00 2.90
600 862 6.480320 GGAGATGACAGAACAATATGGTGTAC 59.520 42.308 0.00 0.00 0.00 2.90
601 863 6.946340 AGATGACAGAACAATATGGTGTACA 58.054 36.000 0.00 0.00 0.00 2.90
602 864 7.394016 AGATGACAGAACAATATGGTGTACAA 58.606 34.615 0.00 0.00 0.00 2.41
603 865 8.049117 AGATGACAGAACAATATGGTGTACAAT 58.951 33.333 0.00 0.00 0.00 2.71
604 866 7.376435 TGACAGAACAATATGGTGTACAATG 57.624 36.000 0.00 0.00 0.00 2.82
605 867 6.374053 TGACAGAACAATATGGTGTACAATGG 59.626 38.462 0.00 0.00 0.00 3.16
606 868 5.652014 ACAGAACAATATGGTGTACAATGGG 59.348 40.000 0.00 0.00 0.00 4.00
607 869 4.644685 AGAACAATATGGTGTACAATGGGC 59.355 41.667 0.00 0.00 0.00 5.36
608 870 4.249638 ACAATATGGTGTACAATGGGCT 57.750 40.909 0.00 0.00 0.00 5.19
609 871 4.207165 ACAATATGGTGTACAATGGGCTC 58.793 43.478 0.00 0.00 0.00 4.70
610 872 4.079787 ACAATATGGTGTACAATGGGCTCT 60.080 41.667 0.00 0.00 0.00 4.09
611 873 4.796110 ATATGGTGTACAATGGGCTCTT 57.204 40.909 0.00 0.00 0.00 2.85
612 874 2.969821 TGGTGTACAATGGGCTCTTT 57.030 45.000 0.00 0.00 0.00 2.52
613 875 2.790433 TGGTGTACAATGGGCTCTTTC 58.210 47.619 0.00 0.00 0.00 2.62
614 876 2.375174 TGGTGTACAATGGGCTCTTTCT 59.625 45.455 0.00 0.00 0.00 2.52
615 877 3.181434 TGGTGTACAATGGGCTCTTTCTT 60.181 43.478 0.00 0.00 0.00 2.52
616 878 4.042311 TGGTGTACAATGGGCTCTTTCTTA 59.958 41.667 0.00 0.00 0.00 2.10
617 879 5.007682 GGTGTACAATGGGCTCTTTCTTAA 58.992 41.667 0.00 0.00 0.00 1.85
618 880 5.652452 GGTGTACAATGGGCTCTTTCTTAAT 59.348 40.000 0.00 0.00 0.00 1.40
619 881 6.152831 GGTGTACAATGGGCTCTTTCTTAATT 59.847 38.462 0.00 0.00 0.00 1.40
620 882 7.309805 GGTGTACAATGGGCTCTTTCTTAATTT 60.310 37.037 0.00 0.00 0.00 1.82
621 883 8.088365 GTGTACAATGGGCTCTTTCTTAATTTT 58.912 33.333 0.00 0.00 0.00 1.82
622 884 9.303116 TGTACAATGGGCTCTTTCTTAATTTTA 57.697 29.630 0.00 0.00 0.00 1.52
625 887 9.259832 ACAATGGGCTCTTTCTTAATTTTATCT 57.740 29.630 0.00 0.00 0.00 1.98
628 890 8.451908 TGGGCTCTTTCTTAATTTTATCTAGC 57.548 34.615 0.00 0.00 0.00 3.42
629 891 8.052748 TGGGCTCTTTCTTAATTTTATCTAGCA 58.947 33.333 0.00 0.00 0.00 3.49
630 892 8.346300 GGGCTCTTTCTTAATTTTATCTAGCAC 58.654 37.037 0.00 0.00 0.00 4.40
631 893 9.114952 GGCTCTTTCTTAATTTTATCTAGCACT 57.885 33.333 0.00 0.00 0.00 4.40
670 932 5.796424 AAAAGTGATGAGGATTTGTTGCT 57.204 34.783 0.00 0.00 0.00 3.91
671 933 6.899393 AAAAGTGATGAGGATTTGTTGCTA 57.101 33.333 0.00 0.00 0.00 3.49
672 934 6.899393 AAAGTGATGAGGATTTGTTGCTAA 57.101 33.333 0.00 0.00 0.00 3.09
673 935 6.506500 AAGTGATGAGGATTTGTTGCTAAG 57.493 37.500 0.00 0.00 0.00 2.18
674 936 5.809001 AGTGATGAGGATTTGTTGCTAAGA 58.191 37.500 0.00 0.00 0.00 2.10
675 937 5.879223 AGTGATGAGGATTTGTTGCTAAGAG 59.121 40.000 0.00 0.00 0.00 2.85
676 938 5.877012 GTGATGAGGATTTGTTGCTAAGAGA 59.123 40.000 0.00 0.00 0.00 3.10
677 939 6.541641 GTGATGAGGATTTGTTGCTAAGAGAT 59.458 38.462 0.00 0.00 0.00 2.75
678 940 7.712639 GTGATGAGGATTTGTTGCTAAGAGATA 59.287 37.037 0.00 0.00 0.00 1.98
679 941 8.267183 TGATGAGGATTTGTTGCTAAGAGATAA 58.733 33.333 0.00 0.00 0.00 1.75
680 942 9.282569 GATGAGGATTTGTTGCTAAGAGATAAT 57.717 33.333 0.00 0.00 0.00 1.28
681 943 8.668510 TGAGGATTTGTTGCTAAGAGATAATC 57.331 34.615 0.00 0.00 0.00 1.75
682 944 8.489489 TGAGGATTTGTTGCTAAGAGATAATCT 58.511 33.333 0.00 0.00 41.27 2.40
683 945 8.900983 AGGATTTGTTGCTAAGAGATAATCTC 57.099 34.615 0.00 0.00 43.70 2.75
728 990 4.918810 TTTTCTGGTTTCTCTTGCCTTC 57.081 40.909 0.00 0.00 0.00 3.46
729 991 3.576078 TTCTGGTTTCTCTTGCCTTCA 57.424 42.857 0.00 0.00 0.00 3.02
730 992 3.795688 TCTGGTTTCTCTTGCCTTCAT 57.204 42.857 0.00 0.00 0.00 2.57
731 993 3.679389 TCTGGTTTCTCTTGCCTTCATC 58.321 45.455 0.00 0.00 0.00 2.92
732 994 3.328931 TCTGGTTTCTCTTGCCTTCATCT 59.671 43.478 0.00 0.00 0.00 2.90
733 995 3.679389 TGGTTTCTCTTGCCTTCATCTC 58.321 45.455 0.00 0.00 0.00 2.75
734 996 3.072915 TGGTTTCTCTTGCCTTCATCTCA 59.927 43.478 0.00 0.00 0.00 3.27
735 997 4.074970 GGTTTCTCTTGCCTTCATCTCAA 58.925 43.478 0.00 0.00 0.00 3.02
736 998 4.083057 GGTTTCTCTTGCCTTCATCTCAAC 60.083 45.833 0.00 0.00 0.00 3.18
737 999 4.356405 TTCTCTTGCCTTCATCTCAACA 57.644 40.909 0.00 0.00 0.00 3.33
738 1000 4.564782 TCTCTTGCCTTCATCTCAACAT 57.435 40.909 0.00 0.00 0.00 2.71
739 1001 4.914983 TCTCTTGCCTTCATCTCAACATT 58.085 39.130 0.00 0.00 0.00 2.71
740 1002 5.319453 TCTCTTGCCTTCATCTCAACATTT 58.681 37.500 0.00 0.00 0.00 2.32
741 1003 6.475504 TCTCTTGCCTTCATCTCAACATTTA 58.524 36.000 0.00 0.00 0.00 1.40
742 1004 7.114754 TCTCTTGCCTTCATCTCAACATTTAT 58.885 34.615 0.00 0.00 0.00 1.40
743 1005 7.281774 TCTCTTGCCTTCATCTCAACATTTATC 59.718 37.037 0.00 0.00 0.00 1.75
744 1006 6.319658 TCTTGCCTTCATCTCAACATTTATCC 59.680 38.462 0.00 0.00 0.00 2.59
745 1007 5.759059 TGCCTTCATCTCAACATTTATCCT 58.241 37.500 0.00 0.00 0.00 3.24
746 1008 6.899089 TGCCTTCATCTCAACATTTATCCTA 58.101 36.000 0.00 0.00 0.00 2.94
747 1009 6.767902 TGCCTTCATCTCAACATTTATCCTAC 59.232 38.462 0.00 0.00 0.00 3.18
748 1010 6.073548 GCCTTCATCTCAACATTTATCCTACG 60.074 42.308 0.00 0.00 0.00 3.51
749 1011 6.073548 CCTTCATCTCAACATTTATCCTACGC 60.074 42.308 0.00 0.00 0.00 4.42
750 1012 5.912892 TCATCTCAACATTTATCCTACGCA 58.087 37.500 0.00 0.00 0.00 5.24
751 1013 6.524734 TCATCTCAACATTTATCCTACGCAT 58.475 36.000 0.00 0.00 0.00 4.73
752 1014 6.424812 TCATCTCAACATTTATCCTACGCATG 59.575 38.462 0.00 0.00 0.00 4.06
753 1015 4.511454 TCTCAACATTTATCCTACGCATGC 59.489 41.667 7.91 7.91 0.00 4.06
754 1016 3.563808 TCAACATTTATCCTACGCATGCC 59.436 43.478 13.15 0.00 0.00 4.40
755 1017 3.492102 ACATTTATCCTACGCATGCCT 57.508 42.857 13.15 2.75 0.00 4.75
756 1018 3.820557 ACATTTATCCTACGCATGCCTT 58.179 40.909 13.15 1.34 0.00 4.35
757 1019 4.207165 ACATTTATCCTACGCATGCCTTT 58.793 39.130 13.15 0.00 0.00 3.11
758 1020 5.373222 ACATTTATCCTACGCATGCCTTTA 58.627 37.500 13.15 0.00 0.00 1.85
759 1021 5.238650 ACATTTATCCTACGCATGCCTTTAC 59.761 40.000 13.15 0.00 0.00 2.01
760 1022 2.256117 ATCCTACGCATGCCTTTACC 57.744 50.000 13.15 0.00 0.00 2.85
761 1023 0.179094 TCCTACGCATGCCTTTACCG 60.179 55.000 13.15 0.00 0.00 4.02
762 1024 0.461339 CCTACGCATGCCTTTACCGT 60.461 55.000 13.15 4.67 36.07 4.83
763 1025 1.365699 CTACGCATGCCTTTACCGTT 58.634 50.000 13.15 0.00 33.79 4.44
764 1026 2.542597 CTACGCATGCCTTTACCGTTA 58.457 47.619 13.15 0.00 33.79 3.18
765 1027 1.365699 ACGCATGCCTTTACCGTTAG 58.634 50.000 13.15 0.00 0.00 2.34
766 1028 1.066716 ACGCATGCCTTTACCGTTAGA 60.067 47.619 13.15 0.00 0.00 2.10
767 1029 2.210116 CGCATGCCTTTACCGTTAGAT 58.790 47.619 13.15 0.00 0.00 1.98
768 1030 3.181473 ACGCATGCCTTTACCGTTAGATA 60.181 43.478 13.15 0.00 0.00 1.98
769 1031 3.805422 CGCATGCCTTTACCGTTAGATAA 59.195 43.478 13.15 0.00 0.00 1.75
770 1032 4.318546 CGCATGCCTTTACCGTTAGATAAC 60.319 45.833 13.15 0.00 0.00 1.89
771 1033 4.024302 GCATGCCTTTACCGTTAGATAACC 60.024 45.833 6.36 0.00 32.69 2.85
772 1034 4.822685 TGCCTTTACCGTTAGATAACCA 57.177 40.909 0.00 0.00 32.69 3.67
773 1035 4.761975 TGCCTTTACCGTTAGATAACCAG 58.238 43.478 0.00 0.00 32.69 4.00
774 1036 3.558829 GCCTTTACCGTTAGATAACCAGC 59.441 47.826 0.00 0.00 32.69 4.85
775 1037 4.761975 CCTTTACCGTTAGATAACCAGCA 58.238 43.478 0.00 0.00 32.69 4.41
776 1038 4.809426 CCTTTACCGTTAGATAACCAGCAG 59.191 45.833 0.00 0.00 32.69 4.24
777 1039 2.981859 ACCGTTAGATAACCAGCAGG 57.018 50.000 0.00 0.00 42.21 4.85
778 1040 1.485066 ACCGTTAGATAACCAGCAGGG 59.515 52.381 0.00 0.00 44.81 4.45
779 1041 1.760613 CCGTTAGATAACCAGCAGGGA 59.239 52.381 0.00 0.00 41.15 4.20
780 1042 2.483188 CCGTTAGATAACCAGCAGGGAC 60.483 54.545 0.00 0.00 41.15 4.46
781 1043 2.798499 CGTTAGATAACCAGCAGGGACG 60.798 54.545 0.00 0.00 41.15 4.79
782 1044 2.154567 TAGATAACCAGCAGGGACGT 57.845 50.000 0.00 0.00 41.15 4.34
783 1045 2.154567 AGATAACCAGCAGGGACGTA 57.845 50.000 0.00 0.00 41.15 3.57
784 1046 1.755380 AGATAACCAGCAGGGACGTAC 59.245 52.381 0.00 0.00 41.15 3.67
785 1047 1.755380 GATAACCAGCAGGGACGTACT 59.245 52.381 0.00 0.00 41.15 2.73
786 1048 0.892755 TAACCAGCAGGGACGTACTG 59.107 55.000 13.74 13.74 41.15 2.74
787 1049 1.119574 AACCAGCAGGGACGTACTGT 61.120 55.000 17.80 5.64 41.15 3.55
788 1050 0.251474 ACCAGCAGGGACGTACTGTA 60.251 55.000 17.80 0.00 41.15 2.74
789 1051 1.112113 CCAGCAGGGACGTACTGTAT 58.888 55.000 17.80 7.41 40.01 2.29
790 1052 1.067212 CCAGCAGGGACGTACTGTATC 59.933 57.143 17.80 5.13 40.01 2.24
791 1053 2.025155 CAGCAGGGACGTACTGTATCT 58.975 52.381 17.80 6.95 38.22 1.98
792 1054 2.033550 CAGCAGGGACGTACTGTATCTC 59.966 54.545 17.80 4.54 38.22 2.75
793 1055 1.337387 GCAGGGACGTACTGTATCTCC 59.663 57.143 17.80 5.55 38.22 3.71
794 1056 1.602851 CAGGGACGTACTGTATCTCCG 59.397 57.143 10.67 2.07 0.00 4.63
795 1057 0.310232 GGGACGTACTGTATCTCCGC 59.690 60.000 0.00 0.00 0.00 5.54
799 1061 1.007618 GTACTGTATCTCCGCGGGC 60.008 63.158 27.83 11.19 0.00 6.13
832 1094 2.667536 AGCTGCAAGGCGTGTCTG 60.668 61.111 1.02 0.56 37.29 3.51
853 1115 0.035881 CTCTGCAGCCTGAGTTGGAA 59.964 55.000 9.47 0.00 33.71 3.53
856 1118 1.073897 GCAGCCTGAGTTGGAACCT 59.926 57.895 0.00 0.00 0.00 3.50
862 1124 2.048127 GAGTTGGAACCTCGCGCT 60.048 61.111 5.56 0.00 0.00 5.92
875 1137 0.450583 TCGCGCTACACTTGTCCTAG 59.549 55.000 5.56 0.00 0.00 3.02
998 1295 5.126067 CCAGTGAGAGAAAGAAAAGGAACA 58.874 41.667 0.00 0.00 0.00 3.18
1013 1310 2.876368 GAACACATGGAGGGCGAGGG 62.876 65.000 0.00 0.00 0.00 4.30
1021 1318 4.488911 AGGGCGAGGGGAGCAGAT 62.489 66.667 0.00 0.00 36.08 2.90
1300 1600 2.506438 GACGTGCTGGACTACGCC 60.506 66.667 0.00 0.00 43.63 5.68
1532 1849 3.907130 AAGGCCTGCCACCAAGCT 61.907 61.111 5.69 0.00 38.92 3.74
1544 1861 2.264794 CAAGCTAAGGTCGGCCGT 59.735 61.111 27.15 8.36 40.50 5.68
1553 1870 4.041917 GTCGGCCGTGTCGTGGTA 62.042 66.667 27.15 0.00 30.45 3.25
1587 1904 4.358841 CGGTGGCCATGAACCCCA 62.359 66.667 9.72 0.00 32.44 4.96
1638 1955 2.627737 GCGTGGTCAGACGAGGACT 61.628 63.158 9.25 0.00 42.10 3.85
1693 2014 6.041069 TCTCCGTTTCCAAACCAAAATTATGT 59.959 34.615 0.00 0.00 35.51 2.29
1731 2055 1.686566 CTACGTGCGTGCCACTCATG 61.687 60.000 5.52 5.52 42.42 3.07
1739 2063 1.160137 GTGCCACTCATGTTCTGTCC 58.840 55.000 0.00 0.00 0.00 4.02
1743 2067 2.544685 CCACTCATGTTCTGTCCGATC 58.455 52.381 0.00 0.00 0.00 3.69
1748 2072 3.849911 TCATGTTCTGTCCGATCTTCAC 58.150 45.455 0.00 0.00 0.00 3.18
1939 2288 1.172175 GCAAGCCTTTCTTCCAGAGG 58.828 55.000 0.00 0.00 31.27 3.69
1944 2293 2.276732 CCTTTCTTCCAGAGGCAACA 57.723 50.000 0.00 0.00 41.41 3.33
1961 2310 3.674138 GCAACAAGCAATCGTGGATCAAT 60.674 43.478 0.00 0.00 44.79 2.57
1962 2311 4.487948 CAACAAGCAATCGTGGATCAATT 58.512 39.130 0.00 0.00 0.00 2.32
1963 2312 4.361451 ACAAGCAATCGTGGATCAATTC 57.639 40.909 0.00 0.00 0.00 2.17
1964 2313 3.758023 ACAAGCAATCGTGGATCAATTCA 59.242 39.130 0.00 0.00 0.00 2.57
1965 2314 4.100529 CAAGCAATCGTGGATCAATTCAC 58.899 43.478 0.00 0.00 0.00 3.18
1971 2320 2.713927 GTGGATCAATTCACGCGTAC 57.286 50.000 13.44 0.00 0.00 3.67
1972 2321 1.996898 GTGGATCAATTCACGCGTACA 59.003 47.619 13.44 0.46 0.00 2.90
1973 2322 2.607635 GTGGATCAATTCACGCGTACAT 59.392 45.455 13.44 3.52 0.00 2.29
1974 2323 3.799963 GTGGATCAATTCACGCGTACATA 59.200 43.478 13.44 0.00 0.00 2.29
1975 2324 4.447724 GTGGATCAATTCACGCGTACATAT 59.552 41.667 13.44 0.49 0.00 1.78
1976 2325 5.631929 GTGGATCAATTCACGCGTACATATA 59.368 40.000 13.44 0.00 0.00 0.86
1985 2334 3.981416 CACGCGTACATATATGTCTTGCT 59.019 43.478 21.49 10.80 41.97 3.91
1993 2342 5.572211 ACATATATGTCTTGCTTTGTTGCG 58.428 37.500 12.75 0.00 35.87 4.85
1996 2345 0.525242 TGTCTTGCTTTGTTGCGTGC 60.525 50.000 0.00 0.00 35.36 5.34
2173 2522 4.211125 TCGTCAAGAGCTTCTATCCAGAT 58.789 43.478 0.00 0.00 0.00 2.90
2178 2527 7.469318 CGTCAAGAGCTTCTATCCAGATCTTAA 60.469 40.741 0.00 0.00 43.55 1.85
2179 2528 7.651704 GTCAAGAGCTTCTATCCAGATCTTAAC 59.348 40.741 0.00 0.00 43.55 2.01
2181 2530 6.139671 AGAGCTTCTATCCAGATCTTAACCA 58.860 40.000 0.00 0.00 33.05 3.67
2185 2534 4.556697 TCTATCCAGATCTTAACCAGCCA 58.443 43.478 0.00 0.00 0.00 4.75
2187 2536 4.591321 ATCCAGATCTTAACCAGCCAAA 57.409 40.909 0.00 0.00 0.00 3.28
2190 2539 4.228210 TCCAGATCTTAACCAGCCAAAGAT 59.772 41.667 0.00 0.00 41.48 2.40
2200 2549 3.074412 CCAGCCAAAGATGTAAGAACGT 58.926 45.455 0.00 0.00 0.00 3.99
2205 2556 4.689345 GCCAAAGATGTAAGAACGTACAGT 59.311 41.667 6.72 0.00 37.41 3.55
2242 2593 2.253452 GACCAGCTTGCAGTTGCG 59.747 61.111 0.00 0.00 45.83 4.85
2255 2617 0.944386 AGTTGCGATTTTGCGTGACT 59.056 45.000 0.00 0.00 37.81 3.41
2275 2642 3.419793 CCAGGAGGTTGTTTGCAGA 57.580 52.632 0.00 0.00 0.00 4.26
2286 2653 2.998772 TGTTTGCAGATTCGTTGAAGC 58.001 42.857 0.00 0.00 0.00 3.86
2287 2654 2.357323 TGTTTGCAGATTCGTTGAAGCA 59.643 40.909 0.00 0.00 29.60 3.91
2296 2663 2.051879 TCGTTGAAGCAGAAGACGAG 57.948 50.000 0.00 0.00 37.76 4.18
2297 2664 1.063806 CGTTGAAGCAGAAGACGAGG 58.936 55.000 0.00 0.00 35.90 4.63
2298 2665 1.335964 CGTTGAAGCAGAAGACGAGGA 60.336 52.381 0.00 0.00 35.90 3.71
2301 2668 1.686587 TGAAGCAGAAGACGAGGACAA 59.313 47.619 0.00 0.00 0.00 3.18
2306 2673 2.886081 CAGAAGACGAGGACAAGATGG 58.114 52.381 0.00 0.00 0.00 3.51
2316 2683 1.406614 GGACAAGATGGTGAGCTCCAG 60.407 57.143 12.15 0.00 41.05 3.86
2377 2744 4.007644 TGCCTCAGGGACAGCGTG 62.008 66.667 0.00 0.00 33.58 5.34
2388 2755 0.171455 GACAGCGTGGAGTCCTACAG 59.829 60.000 11.33 5.29 0.00 2.74
2395 2762 2.760385 GAGTCCTACAGGGCCGCT 60.760 66.667 0.00 0.00 41.83 5.52
2428 2798 0.669077 GAGCGGCCGAGATCTTCTTA 59.331 55.000 33.48 0.00 0.00 2.10
2429 2799 1.271102 GAGCGGCCGAGATCTTCTTAT 59.729 52.381 33.48 0.00 0.00 1.73
2430 2800 2.488545 GAGCGGCCGAGATCTTCTTATA 59.511 50.000 33.48 0.00 0.00 0.98
2452 2826 0.320421 GAAGAAGCGTGGCAGTGGTA 60.320 55.000 0.00 0.00 0.00 3.25
2478 2857 2.467566 AGGACGGTGTGTTACATTCC 57.532 50.000 0.00 0.00 0.00 3.01
2480 2859 0.441145 GACGGTGTGTTACATTCCGC 59.559 55.000 22.87 15.31 44.17 5.54
2510 2924 2.622942 TCCAATGTGGTGCTCAAACTTC 59.377 45.455 0.00 0.00 39.03 3.01
2515 2930 2.948979 TGTGGTGCTCAAACTTCGAAAT 59.051 40.909 0.00 0.00 0.00 2.17
2541 2957 3.001736 GCATAAAACGAGCTAGAAGGCAG 59.998 47.826 0.00 0.00 34.17 4.85
2658 3082 0.036010 CCAACTCGGCCATCTTGACT 60.036 55.000 2.24 0.00 0.00 3.41
2666 3090 1.401539 GGCCATCTTGACTTTGCGTTC 60.402 52.381 0.00 0.00 0.00 3.95
2685 3109 1.621317 TCATCGTCTTTGCCAGTACCA 59.379 47.619 0.00 0.00 0.00 3.25
2694 3118 6.148150 CGTCTTTGCCAGTACCATTTTAACTA 59.852 38.462 0.00 0.00 0.00 2.24
2696 3120 7.389607 GTCTTTGCCAGTACCATTTTAACTAGA 59.610 37.037 0.00 0.00 0.00 2.43
2729 3153 0.475906 GCTACCTCTTGGGCCATCAT 59.524 55.000 7.26 0.00 39.10 2.45
2730 3154 1.544314 GCTACCTCTTGGGCCATCATC 60.544 57.143 7.26 0.00 39.10 2.92
2731 3155 1.072965 CTACCTCTTGGGCCATCATCC 59.927 57.143 7.26 0.00 39.10 3.51
2732 3156 1.152368 CCTCTTGGGCCATCATCCC 59.848 63.158 7.26 0.00 44.17 3.85
2733 3157 1.228063 CTCTTGGGCCATCATCCCG 60.228 63.158 7.26 0.00 46.92 5.14
2734 3158 1.692395 TCTTGGGCCATCATCCCGA 60.692 57.895 7.26 0.00 46.92 5.14
2735 3159 1.228063 CTTGGGCCATCATCCCGAG 60.228 63.158 7.26 0.00 46.92 4.63
2736 3160 1.692395 TTGGGCCATCATCCCGAGA 60.692 57.895 7.26 0.00 46.92 4.04
2737 3161 1.699054 TTGGGCCATCATCCCGAGAG 61.699 60.000 7.26 0.00 46.92 3.20
2738 3162 1.838846 GGGCCATCATCCCGAGAGA 60.839 63.158 4.39 0.00 33.43 3.10
2739 3163 1.670590 GGCCATCATCCCGAGAGAG 59.329 63.158 0.00 0.00 0.00 3.20
2740 3164 0.829602 GGCCATCATCCCGAGAGAGA 60.830 60.000 0.00 0.00 0.00 3.10
2741 3165 1.043816 GCCATCATCCCGAGAGAGAA 58.956 55.000 0.00 0.00 0.00 2.87
2742 3166 1.270041 GCCATCATCCCGAGAGAGAAC 60.270 57.143 0.00 0.00 0.00 3.01
2743 3167 2.315176 CCATCATCCCGAGAGAGAACT 58.685 52.381 0.00 0.00 0.00 3.01
2744 3168 2.697751 CCATCATCCCGAGAGAGAACTT 59.302 50.000 0.00 0.00 0.00 2.66
2745 3169 3.133721 CCATCATCCCGAGAGAGAACTTT 59.866 47.826 0.00 0.00 0.00 2.66
2746 3170 4.383552 CCATCATCCCGAGAGAGAACTTTT 60.384 45.833 0.00 0.00 0.00 2.27
2747 3171 4.891992 TCATCCCGAGAGAGAACTTTTT 57.108 40.909 0.00 0.00 0.00 1.94
2748 3172 4.822026 TCATCCCGAGAGAGAACTTTTTC 58.178 43.478 0.00 0.00 0.00 2.29
2749 3173 4.528596 TCATCCCGAGAGAGAACTTTTTCT 59.471 41.667 0.00 0.00 45.35 2.52
2762 3186 5.805486 AGAACTTTTTCTTTTGAAACCGAGC 59.195 36.000 0.00 0.00 46.80 5.03
2855 3279 4.003519 GAGTGATTACTCGCGCAAAATT 57.996 40.909 8.75 0.00 43.49 1.82
2942 3366 0.255890 AAATAGGCGGTGGAGCACAT 59.744 50.000 0.00 0.00 39.27 3.21
3230 3655 2.113139 CACAGTTCGGCCAACCCT 59.887 61.111 2.24 0.00 35.28 4.34
3262 3687 1.341531 CTATCCGCCGTCCAGATTCTT 59.658 52.381 0.00 0.00 0.00 2.52
3294 3719 2.099098 CCAACCAAGCGAAGAACTTTGT 59.901 45.455 4.11 0.00 0.00 2.83
3299 3724 4.201920 ACCAAGCGAAGAACTTTGTCTTTC 60.202 41.667 4.11 0.00 37.98 2.62
3382 3807 2.994387 CTTGATATGCGGAGGCGGCA 62.994 60.000 13.08 0.00 44.10 5.69
3397 3822 1.604378 GGCAGTGTAGCACCCATCT 59.396 57.895 0.00 0.00 34.49 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 0.106719 ACACCAATGGGCTATTCCGG 60.107 55.000 3.55 0.00 37.90 5.14
34 35 2.733956 TCAACACCAATGGGCTATTCC 58.266 47.619 3.55 0.00 37.90 3.01
37 38 5.719085 TGTAAAATCAACACCAATGGGCTAT 59.281 36.000 3.55 0.00 37.90 2.97
151 152 3.924144 ACAGCACTTCATCTCAGACTTC 58.076 45.455 0.00 0.00 0.00 3.01
189 201 0.391263 CTGGTACAAGAAGGGTCCGC 60.391 60.000 0.00 0.00 38.70 5.54
246 258 9.629878 AACACCCCATATTTAATTACAACGATA 57.370 29.630 0.00 0.00 0.00 2.92
287 300 8.544622 AGTGTAAAATTCCCCAAAAGAAAAGAA 58.455 29.630 0.00 0.00 0.00 2.52
289 302 8.731275 AAGTGTAAAATTCCCCAAAAGAAAAG 57.269 30.769 0.00 0.00 0.00 2.27
299 312 9.955208 CGGTAATATAAAAGTGTAAAATTCCCC 57.045 33.333 0.00 0.00 0.00 4.81
346 570 2.822827 CGACTCATCGTTTTGTTTCCG 58.177 47.619 0.00 0.00 43.66 4.30
405 630 8.852135 TCCTTTAAATACAAACTTCATCCGTTT 58.148 29.630 0.00 0.00 35.12 3.60
414 639 7.731054 TGCCATGTTCCTTTAAATACAAACTT 58.269 30.769 0.00 0.00 0.00 2.66
418 643 7.038729 TGGATTGCCATGTTCCTTTAAATACAA 60.039 33.333 0.00 0.00 39.92 2.41
420 645 6.872920 TGGATTGCCATGTTCCTTTAAATAC 58.127 36.000 0.00 0.00 39.92 1.89
422 647 6.371595 TTGGATTGCCATGTTCCTTTAAAT 57.628 33.333 0.00 0.00 45.46 1.40
423 648 5.815233 TTGGATTGCCATGTTCCTTTAAA 57.185 34.783 0.00 0.00 45.46 1.52
424 649 5.483231 TGATTGGATTGCCATGTTCCTTTAA 59.517 36.000 0.00 0.00 45.46 1.52
426 651 3.839490 TGATTGGATTGCCATGTTCCTTT 59.161 39.130 0.00 0.00 45.46 3.11
427 652 3.443052 TGATTGGATTGCCATGTTCCTT 58.557 40.909 0.00 0.00 45.46 3.36
429 654 2.101917 CCTGATTGGATTGCCATGTTCC 59.898 50.000 0.00 0.00 45.46 3.62
430 655 2.101917 CCCTGATTGGATTGCCATGTTC 59.898 50.000 0.00 0.00 45.46 3.18
432 657 1.784358 CCCTGATTGGATTGCCATGT 58.216 50.000 0.00 0.00 45.46 3.21
433 658 0.391597 GCCCTGATTGGATTGCCATG 59.608 55.000 0.00 0.00 45.46 3.66
434 659 0.263765 AGCCCTGATTGGATTGCCAT 59.736 50.000 0.00 0.00 45.46 4.40
435 660 0.925558 TAGCCCTGATTGGATTGCCA 59.074 50.000 0.00 0.00 44.17 4.92
437 662 2.378038 TGTTAGCCCTGATTGGATTGC 58.622 47.619 0.00 0.00 38.35 3.56
458 683 7.122799 ATCTAGTGTAGAAACTGTATCACAGCA 59.877 37.037 6.23 0.00 43.10 4.41
459 684 7.484975 ATCTAGTGTAGAAACTGTATCACAGC 58.515 38.462 6.23 0.00 43.10 4.40
503 765 7.495934 ACTGTCTTATCAACAACTATACATGCC 59.504 37.037 0.00 0.00 0.00 4.40
505 767 9.809096 AGACTGTCTTATCAACAACTATACATG 57.191 33.333 4.06 0.00 0.00 3.21
521 783 8.758829 TGGCTGAATTAAGATAAGACTGTCTTA 58.241 33.333 27.13 27.13 42.49 2.10
522 784 7.624549 TGGCTGAATTAAGATAAGACTGTCTT 58.375 34.615 24.80 24.80 40.35 3.01
523 785 7.187824 TGGCTGAATTAAGATAAGACTGTCT 57.812 36.000 4.06 4.06 0.00 3.41
524 786 7.497249 ACATGGCTGAATTAAGATAAGACTGTC 59.503 37.037 0.00 0.00 0.00 3.51
525 787 7.341805 ACATGGCTGAATTAAGATAAGACTGT 58.658 34.615 0.00 0.00 0.00 3.55
526 788 7.798596 ACATGGCTGAATTAAGATAAGACTG 57.201 36.000 0.00 0.00 0.00 3.51
536 798 9.639563 TGGATTAAGATTACATGGCTGAATTAA 57.360 29.630 0.00 0.00 0.00 1.40
537 799 9.288576 CTGGATTAAGATTACATGGCTGAATTA 57.711 33.333 0.00 0.00 0.00 1.40
538 800 8.000709 TCTGGATTAAGATTACATGGCTGAATT 58.999 33.333 0.00 0.00 0.00 2.17
539 801 7.446625 GTCTGGATTAAGATTACATGGCTGAAT 59.553 37.037 0.00 0.00 0.00 2.57
540 802 6.767902 GTCTGGATTAAGATTACATGGCTGAA 59.232 38.462 0.00 0.00 0.00 3.02
541 803 6.126796 TGTCTGGATTAAGATTACATGGCTGA 60.127 38.462 0.00 0.00 0.00 4.26
542 804 6.017605 GTGTCTGGATTAAGATTACATGGCTG 60.018 42.308 0.00 0.00 0.00 4.85
543 805 6.058183 GTGTCTGGATTAAGATTACATGGCT 58.942 40.000 0.00 0.00 0.00 4.75
544 806 5.050091 CGTGTCTGGATTAAGATTACATGGC 60.050 44.000 0.00 0.00 0.00 4.40
545 807 6.049149 ACGTGTCTGGATTAAGATTACATGG 58.951 40.000 0.00 0.00 0.00 3.66
546 808 8.642908 TTACGTGTCTGGATTAAGATTACATG 57.357 34.615 0.00 0.00 0.00 3.21
547 809 9.477484 GATTACGTGTCTGGATTAAGATTACAT 57.523 33.333 0.00 0.00 0.00 2.29
548 810 8.692710 AGATTACGTGTCTGGATTAAGATTACA 58.307 33.333 0.00 0.00 0.00 2.41
549 811 8.969267 CAGATTACGTGTCTGGATTAAGATTAC 58.031 37.037 19.38 0.00 39.48 1.89
561 823 4.142381 TGTCATCTCCAGATTACGTGTCTG 60.142 45.833 19.91 19.91 42.11 3.51
562 824 4.017126 TGTCATCTCCAGATTACGTGTCT 58.983 43.478 0.00 0.00 32.77 3.41
563 825 4.096532 TCTGTCATCTCCAGATTACGTGTC 59.903 45.833 0.00 0.00 34.12 3.67
564 826 4.017126 TCTGTCATCTCCAGATTACGTGT 58.983 43.478 0.00 0.00 34.12 4.49
565 827 4.639135 TCTGTCATCTCCAGATTACGTG 57.361 45.455 0.00 0.00 34.12 4.49
566 828 4.462834 TGTTCTGTCATCTCCAGATTACGT 59.537 41.667 0.00 0.00 38.66 3.57
567 829 4.998788 TGTTCTGTCATCTCCAGATTACG 58.001 43.478 0.00 0.00 38.66 3.18
568 830 8.986847 CATATTGTTCTGTCATCTCCAGATTAC 58.013 37.037 0.00 0.00 38.66 1.89
569 831 8.152898 CCATATTGTTCTGTCATCTCCAGATTA 58.847 37.037 0.00 0.00 38.66 1.75
570 832 6.996879 CCATATTGTTCTGTCATCTCCAGATT 59.003 38.462 0.00 0.00 38.66 2.40
571 833 6.100859 ACCATATTGTTCTGTCATCTCCAGAT 59.899 38.462 0.00 0.00 38.66 2.90
572 834 5.426509 ACCATATTGTTCTGTCATCTCCAGA 59.573 40.000 0.00 0.00 37.18 3.86
573 835 5.526479 CACCATATTGTTCTGTCATCTCCAG 59.474 44.000 0.00 0.00 0.00 3.86
574 836 5.045651 ACACCATATTGTTCTGTCATCTCCA 60.046 40.000 0.00 0.00 0.00 3.86
575 837 5.431765 ACACCATATTGTTCTGTCATCTCC 58.568 41.667 0.00 0.00 0.00 3.71
576 838 7.041721 TGTACACCATATTGTTCTGTCATCTC 58.958 38.462 0.00 0.00 0.00 2.75
577 839 6.946340 TGTACACCATATTGTTCTGTCATCT 58.054 36.000 0.00 0.00 0.00 2.90
578 840 7.609760 TTGTACACCATATTGTTCTGTCATC 57.390 36.000 0.00 0.00 0.00 2.92
579 841 7.067372 CCATTGTACACCATATTGTTCTGTCAT 59.933 37.037 0.00 0.00 0.00 3.06
580 842 6.374053 CCATTGTACACCATATTGTTCTGTCA 59.626 38.462 0.00 0.00 0.00 3.58
581 843 6.183360 CCCATTGTACACCATATTGTTCTGTC 60.183 42.308 0.00 0.00 0.00 3.51
582 844 5.652014 CCCATTGTACACCATATTGTTCTGT 59.348 40.000 0.00 0.00 0.00 3.41
583 845 5.450412 GCCCATTGTACACCATATTGTTCTG 60.450 44.000 0.00 0.00 0.00 3.02
584 846 4.644685 GCCCATTGTACACCATATTGTTCT 59.355 41.667 0.00 0.00 0.00 3.01
585 847 4.644685 AGCCCATTGTACACCATATTGTTC 59.355 41.667 0.00 0.00 0.00 3.18
586 848 4.609301 AGCCCATTGTACACCATATTGTT 58.391 39.130 0.00 0.00 0.00 2.83
587 849 4.079787 AGAGCCCATTGTACACCATATTGT 60.080 41.667 0.00 0.00 0.00 2.71
588 850 4.464008 AGAGCCCATTGTACACCATATTG 58.536 43.478 0.00 0.00 0.00 1.90
589 851 4.796110 AGAGCCCATTGTACACCATATT 57.204 40.909 0.00 0.00 0.00 1.28
590 852 4.796110 AAGAGCCCATTGTACACCATAT 57.204 40.909 0.00 0.00 0.00 1.78
591 853 4.227300 AGAAAGAGCCCATTGTACACCATA 59.773 41.667 0.00 0.00 0.00 2.74
592 854 3.010584 AGAAAGAGCCCATTGTACACCAT 59.989 43.478 0.00 0.00 0.00 3.55
593 855 2.375174 AGAAAGAGCCCATTGTACACCA 59.625 45.455 0.00 0.00 0.00 4.17
594 856 3.073274 AGAAAGAGCCCATTGTACACC 57.927 47.619 0.00 0.00 0.00 4.16
595 857 6.759497 ATTAAGAAAGAGCCCATTGTACAC 57.241 37.500 0.00 0.00 0.00 2.90
596 858 7.775053 AAATTAAGAAAGAGCCCATTGTACA 57.225 32.000 0.00 0.00 0.00 2.90
599 861 9.259832 AGATAAAATTAAGAAAGAGCCCATTGT 57.740 29.630 0.00 0.00 0.00 2.71
602 864 9.072375 GCTAGATAAAATTAAGAAAGAGCCCAT 57.928 33.333 0.00 0.00 0.00 4.00
603 865 8.052748 TGCTAGATAAAATTAAGAAAGAGCCCA 58.947 33.333 0.00 0.00 0.00 5.36
604 866 8.346300 GTGCTAGATAAAATTAAGAAAGAGCCC 58.654 37.037 0.00 0.00 0.00 5.19
605 867 9.114952 AGTGCTAGATAAAATTAAGAAAGAGCC 57.885 33.333 0.00 0.00 0.00 4.70
647 909 6.165700 AGCAACAAATCCTCATCACTTTTT 57.834 33.333 0.00 0.00 0.00 1.94
648 910 5.796424 AGCAACAAATCCTCATCACTTTT 57.204 34.783 0.00 0.00 0.00 2.27
649 911 6.716628 TCTTAGCAACAAATCCTCATCACTTT 59.283 34.615 0.00 0.00 0.00 2.66
650 912 6.240894 TCTTAGCAACAAATCCTCATCACTT 58.759 36.000 0.00 0.00 0.00 3.16
651 913 5.809001 TCTTAGCAACAAATCCTCATCACT 58.191 37.500 0.00 0.00 0.00 3.41
652 914 5.877012 TCTCTTAGCAACAAATCCTCATCAC 59.123 40.000 0.00 0.00 0.00 3.06
653 915 6.053632 TCTCTTAGCAACAAATCCTCATCA 57.946 37.500 0.00 0.00 0.00 3.07
654 916 8.668510 TTATCTCTTAGCAACAAATCCTCATC 57.331 34.615 0.00 0.00 0.00 2.92
655 917 9.282569 GATTATCTCTTAGCAACAAATCCTCAT 57.717 33.333 0.00 0.00 0.00 2.90
656 918 8.489489 AGATTATCTCTTAGCAACAAATCCTCA 58.511 33.333 0.00 0.00 0.00 3.86
657 919 8.900983 AGATTATCTCTTAGCAACAAATCCTC 57.099 34.615 0.00 0.00 0.00 3.71
658 920 8.900983 GAGATTATCTCTTAGCAACAAATCCT 57.099 34.615 14.43 0.00 40.30 3.24
706 968 4.709397 TGAAGGCAAGAGAAACCAGAAAAA 59.291 37.500 0.00 0.00 0.00 1.94
707 969 4.277476 TGAAGGCAAGAGAAACCAGAAAA 58.723 39.130 0.00 0.00 0.00 2.29
708 970 3.897239 TGAAGGCAAGAGAAACCAGAAA 58.103 40.909 0.00 0.00 0.00 2.52
709 971 3.576078 TGAAGGCAAGAGAAACCAGAA 57.424 42.857 0.00 0.00 0.00 3.02
710 972 3.328931 AGATGAAGGCAAGAGAAACCAGA 59.671 43.478 0.00 0.00 0.00 3.86
711 973 3.683802 AGATGAAGGCAAGAGAAACCAG 58.316 45.455 0.00 0.00 0.00 4.00
712 974 3.072915 TGAGATGAAGGCAAGAGAAACCA 59.927 43.478 0.00 0.00 0.00 3.67
713 975 3.679389 TGAGATGAAGGCAAGAGAAACC 58.321 45.455 0.00 0.00 0.00 3.27
714 976 4.516698 TGTTGAGATGAAGGCAAGAGAAAC 59.483 41.667 0.00 0.00 0.00 2.78
715 977 4.717877 TGTTGAGATGAAGGCAAGAGAAA 58.282 39.130 0.00 0.00 0.00 2.52
716 978 4.356405 TGTTGAGATGAAGGCAAGAGAA 57.644 40.909 0.00 0.00 0.00 2.87
717 979 4.564782 ATGTTGAGATGAAGGCAAGAGA 57.435 40.909 0.00 0.00 0.00 3.10
718 980 5.640189 AAATGTTGAGATGAAGGCAAGAG 57.360 39.130 0.00 0.00 0.00 2.85
719 981 6.319658 GGATAAATGTTGAGATGAAGGCAAGA 59.680 38.462 0.00 0.00 0.00 3.02
720 982 6.320672 AGGATAAATGTTGAGATGAAGGCAAG 59.679 38.462 0.00 0.00 0.00 4.01
721 983 6.189859 AGGATAAATGTTGAGATGAAGGCAA 58.810 36.000 0.00 0.00 0.00 4.52
722 984 5.759059 AGGATAAATGTTGAGATGAAGGCA 58.241 37.500 0.00 0.00 0.00 4.75
723 985 6.073548 CGTAGGATAAATGTTGAGATGAAGGC 60.074 42.308 0.00 0.00 0.00 4.35
724 986 6.073548 GCGTAGGATAAATGTTGAGATGAAGG 60.074 42.308 0.00 0.00 0.00 3.46
725 987 6.479990 TGCGTAGGATAAATGTTGAGATGAAG 59.520 38.462 0.00 0.00 0.00 3.02
726 988 6.345298 TGCGTAGGATAAATGTTGAGATGAA 58.655 36.000 0.00 0.00 0.00 2.57
727 989 5.912892 TGCGTAGGATAAATGTTGAGATGA 58.087 37.500 0.00 0.00 0.00 2.92
728 990 6.596703 CATGCGTAGGATAAATGTTGAGATG 58.403 40.000 0.00 0.00 35.32 2.90
729 991 5.180117 GCATGCGTAGGATAAATGTTGAGAT 59.820 40.000 0.00 0.00 35.32 2.75
730 992 4.511454 GCATGCGTAGGATAAATGTTGAGA 59.489 41.667 0.00 0.00 35.32 3.27
731 993 4.319766 GGCATGCGTAGGATAAATGTTGAG 60.320 45.833 12.44 0.00 35.32 3.02
732 994 3.563808 GGCATGCGTAGGATAAATGTTGA 59.436 43.478 12.44 0.00 35.32 3.18
733 995 3.565482 AGGCATGCGTAGGATAAATGTTG 59.435 43.478 11.96 0.00 35.32 3.33
734 996 3.820557 AGGCATGCGTAGGATAAATGTT 58.179 40.909 11.96 0.00 35.32 2.71
735 997 3.492102 AGGCATGCGTAGGATAAATGT 57.508 42.857 11.96 0.00 35.32 2.71
736 998 4.836125 AAAGGCATGCGTAGGATAAATG 57.164 40.909 14.17 0.00 35.32 2.32
737 999 4.760204 GGTAAAGGCATGCGTAGGATAAAT 59.240 41.667 14.17 0.00 35.32 1.40
738 1000 4.131596 GGTAAAGGCATGCGTAGGATAAA 58.868 43.478 14.17 0.00 35.32 1.40
739 1001 3.735591 GGTAAAGGCATGCGTAGGATAA 58.264 45.455 14.17 0.00 35.32 1.75
740 1002 2.288579 CGGTAAAGGCATGCGTAGGATA 60.289 50.000 14.17 2.52 35.32 2.59
741 1003 1.540363 CGGTAAAGGCATGCGTAGGAT 60.540 52.381 14.17 3.47 41.30 3.24
742 1004 0.179094 CGGTAAAGGCATGCGTAGGA 60.179 55.000 14.17 0.00 0.00 2.94
743 1005 0.461339 ACGGTAAAGGCATGCGTAGG 60.461 55.000 14.17 4.18 0.00 3.18
744 1006 1.365699 AACGGTAAAGGCATGCGTAG 58.634 50.000 14.17 5.86 0.00 3.51
745 1007 2.166050 TCTAACGGTAAAGGCATGCGTA 59.834 45.455 14.17 1.63 0.00 4.42
746 1008 1.066716 TCTAACGGTAAAGGCATGCGT 60.067 47.619 12.44 9.84 0.00 5.24
747 1009 1.647346 TCTAACGGTAAAGGCATGCG 58.353 50.000 12.44 0.00 0.00 4.73
748 1010 4.024302 GGTTATCTAACGGTAAAGGCATGC 60.024 45.833 9.90 9.90 37.07 4.06
749 1011 5.120399 TGGTTATCTAACGGTAAAGGCATG 58.880 41.667 0.00 0.00 37.07 4.06
750 1012 5.362105 TGGTTATCTAACGGTAAAGGCAT 57.638 39.130 0.00 0.00 37.07 4.40
751 1013 4.761975 CTGGTTATCTAACGGTAAAGGCA 58.238 43.478 0.00 0.00 37.07 4.75
752 1014 3.558829 GCTGGTTATCTAACGGTAAAGGC 59.441 47.826 0.00 0.00 37.07 4.35
753 1015 4.761975 TGCTGGTTATCTAACGGTAAAGG 58.238 43.478 0.00 0.00 37.07 3.11
754 1016 4.809426 CCTGCTGGTTATCTAACGGTAAAG 59.191 45.833 0.51 0.00 37.07 1.85
755 1017 4.383335 CCCTGCTGGTTATCTAACGGTAAA 60.383 45.833 9.00 0.00 37.07 2.01
756 1018 3.133362 CCCTGCTGGTTATCTAACGGTAA 59.867 47.826 9.00 0.00 37.07 2.85
757 1019 2.696707 CCCTGCTGGTTATCTAACGGTA 59.303 50.000 9.00 0.00 37.07 4.02
758 1020 1.485066 CCCTGCTGGTTATCTAACGGT 59.515 52.381 9.00 0.00 37.07 4.83
759 1021 1.760613 TCCCTGCTGGTTATCTAACGG 59.239 52.381 9.00 0.00 37.07 4.44
760 1022 2.798499 CGTCCCTGCTGGTTATCTAACG 60.798 54.545 9.00 3.46 37.07 3.18
761 1023 2.167900 ACGTCCCTGCTGGTTATCTAAC 59.832 50.000 9.00 0.00 34.77 2.34
762 1024 2.463752 ACGTCCCTGCTGGTTATCTAA 58.536 47.619 9.00 0.00 34.77 2.10
763 1025 2.154567 ACGTCCCTGCTGGTTATCTA 57.845 50.000 9.00 0.00 34.77 1.98
764 1026 1.755380 GTACGTCCCTGCTGGTTATCT 59.245 52.381 9.00 0.00 34.77 1.98
765 1027 1.755380 AGTACGTCCCTGCTGGTTATC 59.245 52.381 9.00 0.00 34.77 1.75
766 1028 1.480954 CAGTACGTCCCTGCTGGTTAT 59.519 52.381 9.00 0.00 34.77 1.89
767 1029 0.892755 CAGTACGTCCCTGCTGGTTA 59.107 55.000 9.00 0.00 34.77 2.85
768 1030 1.119574 ACAGTACGTCCCTGCTGGTT 61.120 55.000 13.44 0.00 33.09 3.67
769 1031 0.251474 TACAGTACGTCCCTGCTGGT 60.251 55.000 13.44 0.00 33.09 4.00
770 1032 1.067212 GATACAGTACGTCCCTGCTGG 59.933 57.143 13.44 1.89 33.09 4.85
771 1033 2.025155 AGATACAGTACGTCCCTGCTG 58.975 52.381 13.44 8.26 33.09 4.41
772 1034 2.299521 GAGATACAGTACGTCCCTGCT 58.700 52.381 13.44 4.79 33.09 4.24
773 1035 1.337387 GGAGATACAGTACGTCCCTGC 59.663 57.143 13.44 0.63 33.09 4.85
774 1036 1.602851 CGGAGATACAGTACGTCCCTG 59.397 57.143 12.26 12.26 36.01 4.45
775 1037 1.964552 CGGAGATACAGTACGTCCCT 58.035 55.000 0.00 0.00 0.00 4.20
776 1038 0.310232 GCGGAGATACAGTACGTCCC 59.690 60.000 0.00 0.00 0.00 4.46
777 1039 0.041488 CGCGGAGATACAGTACGTCC 60.041 60.000 0.00 1.17 0.00 4.79
778 1040 0.041488 CCGCGGAGATACAGTACGTC 60.041 60.000 24.07 0.00 0.00 4.34
779 1041 1.442526 CCCGCGGAGATACAGTACGT 61.443 60.000 30.73 0.00 0.00 3.57
780 1042 1.281960 CCCGCGGAGATACAGTACG 59.718 63.158 30.73 0.00 0.00 3.67
781 1043 1.007618 GCCCGCGGAGATACAGTAC 60.008 63.158 30.73 0.00 0.00 2.73
782 1044 2.198287 GGCCCGCGGAGATACAGTA 61.198 63.158 30.73 0.00 0.00 2.74
783 1045 3.537874 GGCCCGCGGAGATACAGT 61.538 66.667 30.73 0.00 0.00 3.55
784 1046 4.301027 GGGCCCGCGGAGATACAG 62.301 72.222 30.73 9.14 0.00 2.74
785 1047 4.853142 AGGGCCCGCGGAGATACA 62.853 66.667 30.73 0.00 0.00 2.29
786 1048 4.301027 CAGGGCCCGCGGAGATAC 62.301 72.222 30.73 12.00 0.00 2.24
818 1080 4.254709 AGCCAGACACGCCTTGCA 62.255 61.111 0.00 0.00 0.00 4.08
856 1118 0.450583 CTAGGACAAGTGTAGCGCGA 59.549 55.000 12.10 0.00 0.00 5.87
862 1124 4.897076 TGGTCTGAAACTAGGACAAGTGTA 59.103 41.667 0.00 0.00 0.00 2.90
875 1137 0.039708 GCAGCTGCTTGGTCTGAAAC 60.040 55.000 31.33 0.00 38.21 2.78
977 1243 5.745227 TGTGTTCCTTTTCTTTCTCTCACT 58.255 37.500 0.00 0.00 0.00 3.41
983 1249 4.829492 CCTCCATGTGTTCCTTTTCTTTCT 59.171 41.667 0.00 0.00 0.00 2.52
998 1295 4.414956 TCCCCTCGCCCTCCATGT 62.415 66.667 0.00 0.00 0.00 3.21
1013 1310 0.526524 CACCGTCTTCGATCTGCTCC 60.527 60.000 0.00 0.00 39.71 4.70
1425 1738 7.556275 ACCAGAACAGAACAGAAAACTTGATAA 59.444 33.333 0.00 0.00 0.00 1.75
1426 1739 7.012327 CACCAGAACAGAACAGAAAACTTGATA 59.988 37.037 0.00 0.00 0.00 2.15
1430 1747 5.123979 GTCACCAGAACAGAACAGAAAACTT 59.876 40.000 0.00 0.00 0.00 2.66
1432 1749 4.201920 GGTCACCAGAACAGAACAGAAAAC 60.202 45.833 0.00 0.00 0.00 2.43
1436 1753 2.365617 GAGGTCACCAGAACAGAACAGA 59.634 50.000 0.00 0.00 32.39 3.41
1437 1754 2.366916 AGAGGTCACCAGAACAGAACAG 59.633 50.000 0.00 0.00 32.39 3.16
1446 1763 1.188219 GCACAGGAGAGGTCACCAGA 61.188 60.000 0.00 0.00 0.00 3.86
1532 1849 2.985282 ACGACACGGCCGACCTTA 60.985 61.111 35.90 0.00 0.00 2.69
1544 1861 1.570967 CGACGACACTACCACGACA 59.429 57.895 0.00 0.00 0.00 4.35
1638 1955 2.589157 CCCCGGTGGTTCTGCAGTA 61.589 63.158 14.67 0.00 0.00 2.74
1662 1979 2.548480 GGTTTGGAAACGGAGAAGTGAG 59.452 50.000 0.00 0.00 39.77 3.51
1665 1986 2.721425 TGGTTTGGAAACGGAGAAGT 57.279 45.000 0.00 0.00 39.77 3.01
1731 2055 2.996621 CAAGGTGAAGATCGGACAGAAC 59.003 50.000 0.00 0.00 0.00 3.01
1739 2063 1.938577 CATCTGCCAAGGTGAAGATCG 59.061 52.381 0.00 0.00 36.56 3.69
1743 2067 1.171308 CCACATCTGCCAAGGTGAAG 58.829 55.000 2.20 0.00 36.56 3.02
1748 2072 1.369091 GCGTACCACATCTGCCAAGG 61.369 60.000 0.00 0.00 0.00 3.61
1814 2138 4.742201 CACGTCCAGGCCGGTCTG 62.742 72.222 29.55 29.55 35.57 3.51
1935 2259 0.877071 CACGATTGCTTGTTGCCTCT 59.123 50.000 0.00 0.00 42.00 3.69
1939 2288 1.199789 TGATCCACGATTGCTTGTTGC 59.800 47.619 0.00 0.00 43.25 4.17
1944 2293 4.361451 GTGAATTGATCCACGATTGCTT 57.639 40.909 0.00 0.00 33.21 3.91
1961 2310 4.443063 GCAAGACATATATGTACGCGTGAA 59.557 41.667 24.59 10.43 41.95 3.18
1962 2311 3.978855 GCAAGACATATATGTACGCGTGA 59.021 43.478 24.59 8.87 41.95 4.35
1963 2312 3.981416 AGCAAGACATATATGTACGCGTG 59.019 43.478 24.59 14.45 41.95 5.34
1964 2313 4.238761 AGCAAGACATATATGTACGCGT 57.761 40.909 19.17 19.17 41.95 6.01
1965 2314 5.051039 ACAAAGCAAGACATATATGTACGCG 60.051 40.000 18.28 3.53 41.95 6.01
1966 2315 6.287107 ACAAAGCAAGACATATATGTACGC 57.713 37.500 18.28 18.67 41.95 4.42
1967 2316 6.628856 GCAACAAAGCAAGACATATATGTACG 59.371 38.462 18.28 10.59 41.95 3.67
1968 2317 6.628856 CGCAACAAAGCAAGACATATATGTAC 59.371 38.462 18.28 11.70 41.95 2.90
1969 2318 6.315144 ACGCAACAAAGCAAGACATATATGTA 59.685 34.615 18.28 0.00 41.95 2.29
1970 2319 5.123820 ACGCAACAAAGCAAGACATATATGT 59.876 36.000 18.31 18.31 45.16 2.29
1971 2320 5.453266 CACGCAACAAAGCAAGACATATATG 59.547 40.000 11.29 11.29 0.00 1.78
1972 2321 5.572211 CACGCAACAAAGCAAGACATATAT 58.428 37.500 0.00 0.00 0.00 0.86
1973 2322 4.671508 GCACGCAACAAAGCAAGACATATA 60.672 41.667 0.00 0.00 0.00 0.86
1974 2323 3.825308 CACGCAACAAAGCAAGACATAT 58.175 40.909 0.00 0.00 0.00 1.78
1975 2324 2.604373 GCACGCAACAAAGCAAGACATA 60.604 45.455 0.00 0.00 0.00 2.29
1976 2325 1.865248 GCACGCAACAAAGCAAGACAT 60.865 47.619 0.00 0.00 0.00 3.06
2007 2356 2.765250 CTTGTCCTCCACGGTGTCGG 62.765 65.000 7.45 6.97 41.39 4.79
2098 2447 4.155733 CCGCAGATGTACCGCCCA 62.156 66.667 0.00 0.00 0.00 5.36
2134 2483 1.779025 CGATGCCGGCCATTTCAGAG 61.779 60.000 26.77 0.75 33.29 3.35
2173 2522 6.121776 TCTTACATCTTTGGCTGGTTAAGA 57.878 37.500 0.00 0.00 32.91 2.10
2178 2527 3.074412 CGTTCTTACATCTTTGGCTGGT 58.926 45.455 0.00 0.00 0.00 4.00
2179 2528 3.074412 ACGTTCTTACATCTTTGGCTGG 58.926 45.455 0.00 0.00 0.00 4.85
2181 2530 4.890088 TGTACGTTCTTACATCTTTGGCT 58.110 39.130 0.00 0.00 0.00 4.75
2205 2556 8.939929 GCTGGTCGTATATACAGTTATGTACTA 58.060 37.037 13.22 0.00 44.51 1.82
2223 2574 2.546494 GCAACTGCAAGCTGGTCGT 61.546 57.895 4.01 0.00 41.59 4.34
2227 2578 0.038892 AAATCGCAACTGCAAGCTGG 60.039 50.000 2.12 0.00 42.21 4.85
2242 2593 2.673368 CTCCTGGTAGTCACGCAAAATC 59.327 50.000 0.00 0.00 0.00 2.17
2267 2633 2.975851 CTGCTTCAACGAATCTGCAAAC 59.024 45.455 0.00 0.00 0.00 2.93
2275 2642 2.989840 CTCGTCTTCTGCTTCAACGAAT 59.010 45.455 0.00 0.00 41.27 3.34
2286 2653 2.232452 ACCATCTTGTCCTCGTCTTCTG 59.768 50.000 0.00 0.00 0.00 3.02
2287 2654 2.232452 CACCATCTTGTCCTCGTCTTCT 59.768 50.000 0.00 0.00 0.00 2.85
2296 2663 0.615331 TGGAGCTCACCATCTTGTCC 59.385 55.000 17.19 0.00 34.77 4.02
2297 2664 1.406614 CCTGGAGCTCACCATCTTGTC 60.407 57.143 17.19 0.00 39.34 3.18
2298 2665 0.617413 CCTGGAGCTCACCATCTTGT 59.383 55.000 17.19 0.00 39.34 3.16
2301 2668 1.202330 CTTCCTGGAGCTCACCATCT 58.798 55.000 17.19 0.00 39.34 2.90
2377 2744 3.851128 GCGGCCCTGTAGGACTCC 61.851 72.222 0.00 0.00 44.54 3.85
2395 2762 4.025858 GCTCACTCCAGCAGCCCA 62.026 66.667 0.00 0.00 39.43 5.36
2428 2798 1.827969 ACTGCCACGCTTCTTCTCTAT 59.172 47.619 0.00 0.00 0.00 1.98
2429 2799 1.067565 CACTGCCACGCTTCTTCTCTA 60.068 52.381 0.00 0.00 0.00 2.43
2430 2800 0.320247 CACTGCCACGCTTCTTCTCT 60.320 55.000 0.00 0.00 0.00 3.10
2452 2826 2.413310 AACACACCGTCCTTCAGTTT 57.587 45.000 0.00 0.00 0.00 2.66
2478 2857 0.452987 CACATTGGATTCCACAGGCG 59.547 55.000 4.45 0.00 30.78 5.52
2480 2859 1.820519 CACCACATTGGATTCCACAGG 59.179 52.381 4.45 7.53 40.96 4.00
2491 2870 2.290367 TCGAAGTTTGAGCACCACATTG 59.710 45.455 0.00 0.00 0.00 2.82
2510 2924 4.651994 AGCTCGTTTTATGCTGAATTTCG 58.348 39.130 0.00 0.00 35.54 3.46
2515 2930 4.870426 CCTTCTAGCTCGTTTTATGCTGAA 59.130 41.667 0.00 0.00 37.62 3.02
2571 2995 3.795688 ATCCCACTCTTGACACACATT 57.204 42.857 0.00 0.00 0.00 2.71
2658 3082 1.334599 GGCAAAGACGATGAACGCAAA 60.335 47.619 0.00 0.00 46.94 3.68
2666 3090 2.093306 TGGTACTGGCAAAGACGATG 57.907 50.000 0.00 0.00 0.00 3.84
2685 3109 7.432838 GCGACGAGAAGAGATTCTAGTTAAAAT 59.567 37.037 0.00 0.00 37.10 1.82
2694 3118 2.614983 GGTAGCGACGAGAAGAGATTCT 59.385 50.000 0.00 0.00 0.00 2.40
2696 3120 2.614983 GAGGTAGCGACGAGAAGAGATT 59.385 50.000 0.00 0.00 0.00 2.40
2729 3153 4.957684 AAGAAAAAGTTCTCTCTCGGGA 57.042 40.909 0.00 0.00 43.59 5.14
2730 3154 5.527582 TCAAAAGAAAAAGTTCTCTCTCGGG 59.472 40.000 0.00 0.00 43.59 5.14
2731 3155 6.604735 TCAAAAGAAAAAGTTCTCTCTCGG 57.395 37.500 0.00 0.00 43.59 4.63
2732 3156 7.429630 GGTTTCAAAAGAAAAAGTTCTCTCTCG 59.570 37.037 0.00 0.00 43.59 4.04
2733 3157 7.429630 CGGTTTCAAAAGAAAAAGTTCTCTCTC 59.570 37.037 0.00 0.00 43.59 3.20
2734 3158 7.120726 TCGGTTTCAAAAGAAAAAGTTCTCTCT 59.879 33.333 0.00 0.00 43.59 3.10
2735 3159 7.248437 TCGGTTTCAAAAGAAAAAGTTCTCTC 58.752 34.615 0.00 0.00 43.59 3.20
2736 3160 7.153217 TCGGTTTCAAAAGAAAAAGTTCTCT 57.847 32.000 0.00 0.00 43.59 3.10
2737 3161 6.020599 GCTCGGTTTCAAAAGAAAAAGTTCTC 60.021 38.462 0.00 0.00 43.59 2.87
2738 3162 5.805486 GCTCGGTTTCAAAAGAAAAAGTTCT 59.195 36.000 0.00 0.00 46.47 3.01
2739 3163 5.005394 GGCTCGGTTTCAAAAGAAAAAGTTC 59.995 40.000 0.00 0.00 0.00 3.01
2740 3164 4.868171 GGCTCGGTTTCAAAAGAAAAAGTT 59.132 37.500 0.00 0.00 0.00 2.66
2741 3165 4.081917 TGGCTCGGTTTCAAAAGAAAAAGT 60.082 37.500 0.00 0.00 0.00 2.66
2742 3166 4.429108 TGGCTCGGTTTCAAAAGAAAAAG 58.571 39.130 0.00 0.00 0.00 2.27
2743 3167 4.457834 TGGCTCGGTTTCAAAAGAAAAA 57.542 36.364 0.00 0.00 0.00 1.94
2744 3168 4.457834 TTGGCTCGGTTTCAAAAGAAAA 57.542 36.364 0.00 0.00 0.00 2.29
2745 3169 4.457834 TTTGGCTCGGTTTCAAAAGAAA 57.542 36.364 0.00 0.00 0.00 2.52
2746 3170 4.457834 TTTTGGCTCGGTTTCAAAAGAA 57.542 36.364 0.00 0.00 36.04 2.52
2749 3173 4.664150 ATCTTTTGGCTCGGTTTCAAAA 57.336 36.364 0.00 0.00 37.83 2.44
2799 3223 6.499436 AGGGTGCCTATTATAACAAAACCTT 58.501 36.000 0.00 0.00 28.47 3.50
2811 3235 1.139455 GCCGTGTAAGGGTGCCTATTA 59.861 52.381 0.00 0.00 45.59 0.98
2855 3279 3.304829 GGCAAAGAAATTAGGGGCCATA 58.695 45.455 4.39 0.00 39.66 2.74
2982 3406 1.065701 GACTATGCTCGTGTCGTGGAT 59.934 52.381 4.11 4.11 35.79 3.41
3119 3543 3.511146 GCCTTTGGAAGATGGTCATTGAA 59.489 43.478 0.00 0.00 0.00 2.69
3238 3663 2.762459 TGGACGGCGGATAGGCTT 60.762 61.111 13.24 0.00 44.22 4.35
3294 3719 2.268076 GCTTGGGCGCCTTGAAAGA 61.268 57.895 28.56 3.64 0.00 2.52
3336 3761 4.724279 TTCCTTGGGCTAGTTCTCTTTT 57.276 40.909 0.00 0.00 0.00 2.27
3337 3762 4.936685 ATTCCTTGGGCTAGTTCTCTTT 57.063 40.909 0.00 0.00 0.00 2.52
3338 3763 4.593956 CAATTCCTTGGGCTAGTTCTCTT 58.406 43.478 0.00 0.00 0.00 2.85
3382 3807 1.604378 GGCAGATGGGTGCTACACT 59.396 57.895 0.00 0.00 43.45 3.55


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.