Multiple sequence alignment - TraesCS7B01G298300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G298300 chr7B 100.000 5721 0 0 1 5721 535499518 535505238 0.000000e+00 10565.0
1 TraesCS7B01G298300 chr7B 95.390 629 28 1 68 695 74093302 74092674 0.000000e+00 1000.0
2 TraesCS7B01G298300 chr7B 81.178 781 123 19 3511 4273 535450185 535450959 1.760000e-169 606.0
3 TraesCS7B01G298300 chr7B 88.976 254 22 2 2868 3115 535449916 535450169 5.570000e-80 309.0
4 TraesCS7B01G298300 chr7B 90.141 213 21 0 2260 2472 535449561 535449773 1.570000e-70 278.0
5 TraesCS7B01G298300 chr7B 85.714 259 29 3 4574 4831 535451240 535451491 3.400000e-67 267.0
6 TraesCS7B01G298300 chr7B 83.209 268 44 1 3989 4255 535258912 535259179 1.590000e-60 244.0
7 TraesCS7B01G298300 chr7B 81.433 307 47 8 4524 4828 535259513 535259811 5.730000e-60 243.0
8 TraesCS7B01G298300 chr7B 81.961 255 26 11 970 1207 535449149 535449400 1.260000e-46 198.0
9 TraesCS7B01G298300 chr7B 100.000 40 0 0 827 866 25660583 25660544 2.210000e-09 75.0
10 TraesCS7B01G298300 chr7A 93.505 2756 137 23 2158 4891 574746440 574749175 0.000000e+00 4060.0
11 TraesCS7B01G298300 chr7A 89.440 625 34 8 877 1481 574745829 574746441 0.000000e+00 760.0
12 TraesCS7B01G298300 chr7A 81.105 778 126 15 3511 4273 574679170 574679941 2.280000e-168 603.0
13 TraesCS7B01G298300 chr7A 94.412 340 16 2 1568 1904 615373278 615372939 2.360000e-143 520.0
14 TraesCS7B01G298300 chr7A 92.803 264 13 3 1894 2153 615355147 615354886 1.500000e-100 377.0
15 TraesCS7B01G298300 chr7A 88.400 250 25 1 2866 3115 574678909 574679154 1.210000e-76 298.0
16 TraesCS7B01G298300 chr7A 83.391 289 37 6 4574 4859 574680286 574680566 2.050000e-64 257.0
17 TraesCS7B01G298300 chr7A 82.450 302 43 8 4524 4823 574127407 574127700 7.360000e-64 255.0
18 TraesCS7B01G298300 chr7A 89.119 193 20 1 3606 3798 574126362 574126553 7.410000e-59 239.0
19 TraesCS7B01G298300 chr7A 82.971 276 28 13 969 1229 574678200 574678471 1.240000e-56 231.0
20 TraesCS7B01G298300 chr7A 88.312 154 11 4 4615 4762 21447858 21448010 1.640000e-40 178.0
21 TraesCS7B01G298300 chr7A 88.462 104 10 2 4939 5041 574749293 574749395 2.160000e-24 124.0
22 TraesCS7B01G298300 chr7A 83.158 95 13 2 5623 5714 574752926 574753020 3.670000e-12 84.2
23 TraesCS7B01G298300 chr7A 90.566 53 5 0 4860 4912 574749183 574749235 2.860000e-08 71.3
24 TraesCS7B01G298300 chr7D 89.762 2979 201 39 2158 5074 506872370 506875306 0.000000e+00 3716.0
25 TraesCS7B01G298300 chr7D 90.737 529 31 8 881 1403 506871714 506872230 0.000000e+00 689.0
26 TraesCS7B01G298300 chr7D 82.431 757 117 13 3511 4255 506813263 506814015 0.000000e+00 647.0
27 TraesCS7B01G298300 chr7D 88.278 273 31 1 2854 3126 506812981 506813252 5.530000e-85 326.0
28 TraesCS7B01G298300 chr7D 84.281 299 37 7 2236 2531 506811900 506812191 3.370000e-72 283.0
29 TraesCS7B01G298300 chr7D 89.767 215 20 1 1944 2158 18444443 18444231 2.030000e-69 274.0
30 TraesCS7B01G298300 chr7D 82.175 331 41 8 4532 4859 506814125 506814440 9.450000e-68 268.0
31 TraesCS7B01G298300 chr7D 86.364 242 23 5 997 1228 506811648 506811889 7.360000e-64 255.0
32 TraesCS7B01G298300 chr7D 90.155 193 18 1 3606 3798 506722059 506722250 3.420000e-62 250.0
33 TraesCS7B01G298300 chr7D 82.394 284 40 8 4524 4805 506723020 506723295 7.410000e-59 239.0
34 TraesCS7B01G298300 chr7D 82.014 278 47 3 3990 4265 506722426 506722702 3.450000e-57 233.0
35 TraesCS7B01G298300 chr7D 95.139 144 6 1 1339 1482 506872230 506872372 5.770000e-55 226.0
36 TraesCS7B01G298300 chr7D 88.971 136 6 4 1003 1129 506719528 506719663 5.930000e-35 159.0
37 TraesCS7B01G298300 chr7D 86.000 100 11 1 1027 1126 506675098 506675194 2.820000e-18 104.0
38 TraesCS7B01G298300 chr7D 88.312 77 7 2 804 880 578971376 578971302 2.200000e-14 91.6
39 TraesCS7B01G298300 chr1B 96.607 619 20 1 68 685 269218889 269218271 0.000000e+00 1026.0
40 TraesCS7B01G298300 chr1B 95.866 629 25 1 68 695 25227738 25227110 0.000000e+00 1016.0
41 TraesCS7B01G298300 chr1B 95.694 627 26 1 70 695 390272496 390273122 0.000000e+00 1007.0
42 TraesCS7B01G298300 chr1B 95.382 628 29 0 68 695 644278214 644278841 0.000000e+00 1000.0
43 TraesCS7B01G298300 chr1B 94.301 386 18 2 1484 1869 49929303 49929684 6.390000e-164 588.0
44 TraesCS7B01G298300 chr1B 95.932 295 11 1 1865 2159 49931484 49931777 1.440000e-130 477.0
45 TraesCS7B01G298300 chr1B 95.349 43 1 1 829 871 631823857 631823898 3.700000e-07 67.6
46 TraesCS7B01G298300 chr6B 95.707 629 26 1 68 695 21063419 21064047 0.000000e+00 1011.0
47 TraesCS7B01G298300 chr6B 96.078 51 0 1 826 876 118031317 118031269 1.320000e-11 82.4
48 TraesCS7B01G298300 chr2B 95.541 628 28 0 68 695 770484954 770485581 0.000000e+00 1005.0
49 TraesCS7B01G298300 chr2B 95.231 629 29 1 68 695 156588823 156589451 0.000000e+00 994.0
50 TraesCS7B01G298300 chr2B 94.671 638 32 2 68 704 40323759 40324395 0.000000e+00 989.0
51 TraesCS7B01G298300 chr5A 92.701 685 43 3 1479 2158 520463264 520463946 0.000000e+00 981.0
52 TraesCS7B01G298300 chr5A 88.871 638 67 3 78 712 706052292 706052928 0.000000e+00 782.0
53 TraesCS7B01G298300 chr5A 91.192 193 16 1 3606 3798 602786100 602786291 1.580000e-65 261.0
54 TraesCS7B01G298300 chr5A 91.192 193 16 1 3606 3798 602810340 602810531 1.580000e-65 261.0
55 TraesCS7B01G298300 chr5A 82.456 114 17 2 1025 1138 478993111 478993001 4.720000e-16 97.1
56 TraesCS7B01G298300 chr5A 100.000 36 0 0 1 36 34691995 34691960 3.700000e-07 67.6
57 TraesCS7B01G298300 chr6A 93.253 667 38 3 1496 2157 212309303 212309967 0.000000e+00 976.0
58 TraesCS7B01G298300 chr6A 90.889 450 36 2 1531 1976 72479442 72479890 2.950000e-167 599.0
59 TraesCS7B01G298300 chr4A 92.163 689 45 6 1478 2160 278441217 278440532 0.000000e+00 965.0
60 TraesCS7B01G298300 chr4A 90.698 129 11 1 739 867 648655818 648655691 2.740000e-38 171.0
61 TraesCS7B01G298300 chr1A 91.642 682 44 9 1485 2157 22063759 22063082 0.000000e+00 931.0
62 TraesCS7B01G298300 chr1A 87.978 183 22 0 1483 1665 304047563 304047381 3.470000e-52 217.0
63 TraesCS7B01G298300 chr2A 87.349 664 78 4 68 727 658775158 658775819 0.000000e+00 756.0
64 TraesCS7B01G298300 chr2A 84.146 574 81 6 111 679 98727070 98727638 1.080000e-151 547.0
65 TraesCS7B01G298300 chr5D 94.903 412 19 1 1483 1892 540234754 540234343 1.340000e-180 643.0
66 TraesCS7B01G298300 chr5D 91.549 284 16 5 1883 2160 540230844 540230563 8.990000e-103 385.0
67 TraesCS7B01G298300 chr4B 89.767 215 18 3 1944 2158 95220124 95219914 7.300000e-69 272.0
68 TraesCS7B01G298300 chr4B 96.154 52 2 0 825 876 176655287 176655338 1.020000e-12 86.1
69 TraesCS7B01G298300 chr4B 88.406 69 8 0 1761 1829 501182528 501182460 3.670000e-12 84.2
70 TraesCS7B01G298300 chr3A 87.958 191 12 6 980 1163 477792276 477792462 1.250000e-51 215.0
71 TraesCS7B01G298300 chr3A 100.000 36 0 0 1 36 555404402 555404367 3.700000e-07 67.6
72 TraesCS7B01G298300 chr3B 88.889 72 6 2 805 876 88421075 88421006 2.840000e-13 87.9
73 TraesCS7B01G298300 chrUn 95.556 45 1 1 827 871 263441643 263441600 2.860000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G298300 chr7B 535499518 535505238 5720 False 10565.000000 10565 100.000000 1 5721 1 chr7B.!!$F1 5720
1 TraesCS7B01G298300 chr7B 74092674 74093302 628 True 1000.000000 1000 95.390000 68 695 1 chr7B.!!$R2 627
2 TraesCS7B01G298300 chr7B 535449149 535451491 2342 False 331.600000 606 85.594000 970 4831 5 chr7B.!!$F3 3861
3 TraesCS7B01G298300 chr7B 535258912 535259811 899 False 243.500000 244 82.321000 3989 4828 2 chr7B.!!$F2 839
4 TraesCS7B01G298300 chr7A 574745829 574753020 7191 False 1019.900000 4060 89.026200 877 5714 5 chr7A.!!$F4 4837
5 TraesCS7B01G298300 chr7A 574678200 574680566 2366 False 347.250000 603 83.966750 969 4859 4 chr7A.!!$F3 3890
6 TraesCS7B01G298300 chr7A 574126362 574127700 1338 False 247.000000 255 85.784500 3606 4823 2 chr7A.!!$F2 1217
7 TraesCS7B01G298300 chr7D 506871714 506875306 3592 False 1543.666667 3716 91.879333 881 5074 3 chr7D.!!$F4 4193
8 TraesCS7B01G298300 chr7D 506811648 506814440 2792 False 355.800000 647 84.705800 997 4859 5 chr7D.!!$F3 3862
9 TraesCS7B01G298300 chr7D 506719528 506723295 3767 False 220.250000 250 85.883500 1003 4805 4 chr7D.!!$F2 3802
10 TraesCS7B01G298300 chr1B 269218271 269218889 618 True 1026.000000 1026 96.607000 68 685 1 chr1B.!!$R2 617
11 TraesCS7B01G298300 chr1B 25227110 25227738 628 True 1016.000000 1016 95.866000 68 695 1 chr1B.!!$R1 627
12 TraesCS7B01G298300 chr1B 390272496 390273122 626 False 1007.000000 1007 95.694000 70 695 1 chr1B.!!$F1 625
13 TraesCS7B01G298300 chr1B 644278214 644278841 627 False 1000.000000 1000 95.382000 68 695 1 chr1B.!!$F3 627
14 TraesCS7B01G298300 chr1B 49929303 49931777 2474 False 532.500000 588 95.116500 1484 2159 2 chr1B.!!$F4 675
15 TraesCS7B01G298300 chr6B 21063419 21064047 628 False 1011.000000 1011 95.707000 68 695 1 chr6B.!!$F1 627
16 TraesCS7B01G298300 chr2B 770484954 770485581 627 False 1005.000000 1005 95.541000 68 695 1 chr2B.!!$F3 627
17 TraesCS7B01G298300 chr2B 156588823 156589451 628 False 994.000000 994 95.231000 68 695 1 chr2B.!!$F2 627
18 TraesCS7B01G298300 chr2B 40323759 40324395 636 False 989.000000 989 94.671000 68 704 1 chr2B.!!$F1 636
19 TraesCS7B01G298300 chr5A 520463264 520463946 682 False 981.000000 981 92.701000 1479 2158 1 chr5A.!!$F1 679
20 TraesCS7B01G298300 chr5A 706052292 706052928 636 False 782.000000 782 88.871000 78 712 1 chr5A.!!$F4 634
21 TraesCS7B01G298300 chr6A 212309303 212309967 664 False 976.000000 976 93.253000 1496 2157 1 chr6A.!!$F2 661
22 TraesCS7B01G298300 chr4A 278440532 278441217 685 True 965.000000 965 92.163000 1478 2160 1 chr4A.!!$R1 682
23 TraesCS7B01G298300 chr1A 22063082 22063759 677 True 931.000000 931 91.642000 1485 2157 1 chr1A.!!$R1 672
24 TraesCS7B01G298300 chr2A 658775158 658775819 661 False 756.000000 756 87.349000 68 727 1 chr2A.!!$F2 659
25 TraesCS7B01G298300 chr2A 98727070 98727638 568 False 547.000000 547 84.146000 111 679 1 chr2A.!!$F1 568
26 TraesCS7B01G298300 chr5D 540230563 540234754 4191 True 514.000000 643 93.226000 1483 2160 2 chr5D.!!$R1 677

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
774 781 0.034337 TTCAGCGGGCGTAAGAGTTT 59.966 50.000 0.00 0.00 43.02 2.66 F
840 847 0.036765 TGTACGGTGGATCAAGCACC 60.037 55.000 9.03 9.03 35.75 5.01 F
846 853 0.036765 GTGGATCAAGCACCGGTACA 60.037 55.000 6.87 0.00 0.00 2.90 F
850 857 0.180406 ATCAAGCACCGGTACATCCC 59.820 55.000 6.87 0.00 0.00 3.85 F
2377 7878 0.736325 ACTACGACAGCATTGCGTCC 60.736 55.000 20.18 7.33 37.86 4.79 F
2434 7935 1.001641 CCCTGTCCCTTCTGGCAAG 60.002 63.158 0.00 0.00 0.00 4.01 F
4575 11673 1.544246 TGTTCTCTCTCCGAATTGCGA 59.456 47.619 0.00 0.00 44.57 5.10 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2531 8032 1.270571 TGCGCTATGTCAAACCACTCA 60.271 47.619 9.73 0.0 0.00 3.41 R
2769 8839 3.441572 AGATAGGCTGATGTTGCACAAAC 59.558 43.478 0.00 0.0 39.41 2.93 R
3005 9085 5.009631 AGTTAGCATTATTGGACACAGCAA 58.990 37.500 0.00 0.0 0.00 3.91 R
3022 9102 3.639672 TTTACCCTTAGGCCAGTTAGC 57.360 47.619 5.01 0.0 36.11 3.09 R
3604 10440 1.269206 CCTGCCACAATGACAACACAC 60.269 52.381 0.00 0.0 0.00 3.82 R
4578 11676 1.065401 CTTCGGTGAAACTGCAAAGCA 59.935 47.619 0.00 0.0 44.90 3.91 R
5610 12797 1.262417 TGCCTAGTCATCCACGAACA 58.738 50.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 0.863144 GCAAAAAGCTGCACACATGG 59.137 50.000 1.02 0.00 42.17 3.66
22 23 1.122227 AAAAAGCTGCACACATGGGT 58.878 45.000 0.00 0.00 0.00 4.51
23 24 0.675633 AAAAGCTGCACACATGGGTC 59.324 50.000 0.00 0.00 0.00 4.46
24 25 0.178981 AAAGCTGCACACATGGGTCT 60.179 50.000 0.00 0.00 0.00 3.85
25 26 0.692476 AAGCTGCACACATGGGTCTA 59.308 50.000 0.00 0.00 0.00 2.59
26 27 0.914644 AGCTGCACACATGGGTCTAT 59.085 50.000 0.00 0.00 0.00 1.98
27 28 1.019673 GCTGCACACATGGGTCTATG 58.980 55.000 0.00 0.00 0.00 2.23
28 29 1.679944 GCTGCACACATGGGTCTATGT 60.680 52.381 0.00 0.00 41.77 2.29
29 30 2.283298 CTGCACACATGGGTCTATGTC 58.717 52.381 0.00 0.00 39.17 3.06
30 31 1.627834 TGCACACATGGGTCTATGTCA 59.372 47.619 0.00 0.00 39.17 3.58
31 32 2.283298 GCACACATGGGTCTATGTCAG 58.717 52.381 0.00 0.00 39.17 3.51
32 33 2.355108 GCACACATGGGTCTATGTCAGT 60.355 50.000 0.00 0.00 39.17 3.41
33 34 3.118775 GCACACATGGGTCTATGTCAGTA 60.119 47.826 0.00 0.00 39.17 2.74
34 35 4.433615 CACACATGGGTCTATGTCAGTAC 58.566 47.826 0.00 0.00 39.17 2.73
35 36 4.160439 CACACATGGGTCTATGTCAGTACT 59.840 45.833 0.00 0.00 39.17 2.73
36 37 5.359860 CACACATGGGTCTATGTCAGTACTA 59.640 44.000 0.00 0.00 39.17 1.82
37 38 5.360144 ACACATGGGTCTATGTCAGTACTAC 59.640 44.000 0.00 0.00 39.17 2.73
38 39 5.594725 CACATGGGTCTATGTCAGTACTACT 59.405 44.000 0.00 0.00 39.17 2.57
39 40 5.828859 ACATGGGTCTATGTCAGTACTACTC 59.171 44.000 0.00 0.00 36.60 2.59
40 41 4.789807 TGGGTCTATGTCAGTACTACTCC 58.210 47.826 0.00 0.00 0.00 3.85
41 42 4.143543 GGGTCTATGTCAGTACTACTCCC 58.856 52.174 0.00 0.00 0.00 4.30
42 43 4.141205 GGGTCTATGTCAGTACTACTCCCT 60.141 50.000 0.00 0.00 0.00 4.20
43 44 5.065235 GGTCTATGTCAGTACTACTCCCTC 58.935 50.000 0.00 0.00 0.00 4.30
44 45 5.065235 GTCTATGTCAGTACTACTCCCTCC 58.935 50.000 0.00 0.00 0.00 4.30
45 46 2.414994 TGTCAGTACTACTCCCTCCG 57.585 55.000 0.00 0.00 0.00 4.63
46 47 1.632409 TGTCAGTACTACTCCCTCCGT 59.368 52.381 0.00 0.00 0.00 4.69
47 48 2.287769 GTCAGTACTACTCCCTCCGTC 58.712 57.143 0.00 0.00 0.00 4.79
48 49 1.211457 TCAGTACTACTCCCTCCGTCC 59.789 57.143 0.00 0.00 0.00 4.79
49 50 0.550432 AGTACTACTCCCTCCGTCCC 59.450 60.000 0.00 0.00 0.00 4.46
50 51 0.817229 GTACTACTCCCTCCGTCCCG 60.817 65.000 0.00 0.00 0.00 5.14
51 52 1.274703 TACTACTCCCTCCGTCCCGT 61.275 60.000 0.00 0.00 0.00 5.28
52 53 1.379576 CTACTCCCTCCGTCCCGTT 60.380 63.158 0.00 0.00 0.00 4.44
53 54 0.107017 CTACTCCCTCCGTCCCGTTA 60.107 60.000 0.00 0.00 0.00 3.18
54 55 0.552848 TACTCCCTCCGTCCCGTTAT 59.447 55.000 0.00 0.00 0.00 1.89
55 56 0.552848 ACTCCCTCCGTCCCGTTATA 59.447 55.000 0.00 0.00 0.00 0.98
56 57 1.146566 ACTCCCTCCGTCCCGTTATAT 59.853 52.381 0.00 0.00 0.00 0.86
57 58 2.376518 ACTCCCTCCGTCCCGTTATATA 59.623 50.000 0.00 0.00 0.00 0.86
58 59 3.181429 ACTCCCTCCGTCCCGTTATATAA 60.181 47.826 0.00 0.00 0.00 0.98
59 60 3.424703 TCCCTCCGTCCCGTTATATAAG 58.575 50.000 0.00 0.00 0.00 1.73
60 61 3.160269 CCCTCCGTCCCGTTATATAAGT 58.840 50.000 0.00 0.00 0.00 2.24
61 62 3.057033 CCCTCCGTCCCGTTATATAAGTG 60.057 52.174 0.00 0.00 0.00 3.16
62 63 3.571401 CCTCCGTCCCGTTATATAAGTGT 59.429 47.826 0.00 0.00 0.00 3.55
63 64 4.761739 CCTCCGTCCCGTTATATAAGTGTA 59.238 45.833 0.00 0.00 0.00 2.90
64 65 5.106396 CCTCCGTCCCGTTATATAAGTGTAG 60.106 48.000 0.00 0.00 0.00 2.74
65 66 5.376625 TCCGTCCCGTTATATAAGTGTAGT 58.623 41.667 0.00 0.00 0.00 2.73
66 67 5.239306 TCCGTCCCGTTATATAAGTGTAGTG 59.761 44.000 0.00 0.00 0.00 2.74
85 86 6.482308 TGTAGTGTCCAAGAAAGAAAGTTAGC 59.518 38.462 0.00 0.00 0.00 3.09
199 200 2.551504 GGGAGGGCTTCGTTTTTAGTCA 60.552 50.000 0.00 0.00 0.00 3.41
202 204 4.379499 GGAGGGCTTCGTTTTTAGTCATTG 60.379 45.833 0.00 0.00 0.00 2.82
250 252 0.251386 ACTCAGGAAGGCGAGACAGA 60.251 55.000 0.00 0.00 33.33 3.41
252 254 0.038310 TCAGGAAGGCGAGACAGAGA 59.962 55.000 0.00 0.00 0.00 3.10
391 393 1.202110 GCTCGGATCTCGTCGTTGTTA 60.202 52.381 0.00 0.00 40.32 2.41
408 410 5.204833 GTTGTTAGTCTACGTTCGTGTGTA 58.795 41.667 8.14 0.00 0.00 2.90
474 476 1.993701 TTGCTGTTCTGGGGTGCTGA 61.994 55.000 0.00 0.00 0.00 4.26
618 622 3.136763 CGCTAGGTGGTCTACGAATCTA 58.863 50.000 0.00 0.00 0.00 1.98
746 753 1.201424 GGGACGGAGGGAGTATTTGT 58.799 55.000 0.00 0.00 0.00 2.83
747 754 1.138464 GGGACGGAGGGAGTATTTGTC 59.862 57.143 0.00 0.00 0.00 3.18
748 755 1.829222 GGACGGAGGGAGTATTTGTCA 59.171 52.381 0.00 0.00 0.00 3.58
749 756 2.159085 GGACGGAGGGAGTATTTGTCAG 60.159 54.545 0.00 0.00 0.00 3.51
750 757 2.496470 GACGGAGGGAGTATTTGTCAGT 59.504 50.000 0.00 0.00 0.00 3.41
751 758 2.904434 ACGGAGGGAGTATTTGTCAGTT 59.096 45.455 0.00 0.00 0.00 3.16
752 759 3.262420 CGGAGGGAGTATTTGTCAGTTG 58.738 50.000 0.00 0.00 0.00 3.16
753 760 3.306780 CGGAGGGAGTATTTGTCAGTTGT 60.307 47.826 0.00 0.00 0.00 3.32
754 761 4.081862 CGGAGGGAGTATTTGTCAGTTGTA 60.082 45.833 0.00 0.00 0.00 2.41
755 762 5.395324 CGGAGGGAGTATTTGTCAGTTGTAT 60.395 44.000 0.00 0.00 0.00 2.29
756 763 6.415573 GGAGGGAGTATTTGTCAGTTGTATT 58.584 40.000 0.00 0.00 0.00 1.89
757 764 6.539103 GGAGGGAGTATTTGTCAGTTGTATTC 59.461 42.308 0.00 0.00 0.00 1.75
758 765 7.016153 AGGGAGTATTTGTCAGTTGTATTCA 57.984 36.000 0.00 0.00 0.00 2.57
759 766 7.106239 AGGGAGTATTTGTCAGTTGTATTCAG 58.894 38.462 0.00 0.00 0.00 3.02
760 767 6.183360 GGGAGTATTTGTCAGTTGTATTCAGC 60.183 42.308 0.00 0.00 0.00 4.26
761 768 6.408858 AGTATTTGTCAGTTGTATTCAGCG 57.591 37.500 0.00 0.00 0.00 5.18
762 769 4.685169 ATTTGTCAGTTGTATTCAGCGG 57.315 40.909 0.00 0.00 0.00 5.52
763 770 2.093306 TGTCAGTTGTATTCAGCGGG 57.907 50.000 0.00 0.00 0.00 6.13
764 771 0.727398 GTCAGTTGTATTCAGCGGGC 59.273 55.000 0.00 0.00 0.00 6.13
765 772 0.739462 TCAGTTGTATTCAGCGGGCG 60.739 55.000 0.00 0.00 0.00 6.13
766 773 1.019278 CAGTTGTATTCAGCGGGCGT 61.019 55.000 0.00 0.00 0.00 5.68
767 774 0.533491 AGTTGTATTCAGCGGGCGTA 59.467 50.000 0.00 0.00 0.00 4.42
768 775 1.066716 AGTTGTATTCAGCGGGCGTAA 60.067 47.619 0.00 0.00 0.00 3.18
769 776 1.326548 GTTGTATTCAGCGGGCGTAAG 59.673 52.381 0.00 0.00 43.44 2.34
770 777 0.818938 TGTATTCAGCGGGCGTAAGA 59.181 50.000 0.00 0.00 43.02 2.10
771 778 1.202371 TGTATTCAGCGGGCGTAAGAG 60.202 52.381 0.00 0.00 43.02 2.85
772 779 1.108776 TATTCAGCGGGCGTAAGAGT 58.891 50.000 0.00 0.00 43.02 3.24
773 780 0.249398 ATTCAGCGGGCGTAAGAGTT 59.751 50.000 0.00 0.00 43.02 3.01
774 781 0.034337 TTCAGCGGGCGTAAGAGTTT 59.966 50.000 0.00 0.00 43.02 2.66
775 782 0.669318 TCAGCGGGCGTAAGAGTTTG 60.669 55.000 0.00 0.00 43.02 2.93
776 783 0.949105 CAGCGGGCGTAAGAGTTTGT 60.949 55.000 0.00 0.00 43.02 2.83
777 784 0.604578 AGCGGGCGTAAGAGTTTGTA 59.395 50.000 0.00 0.00 43.02 2.41
778 785 1.206371 AGCGGGCGTAAGAGTTTGTAT 59.794 47.619 0.00 0.00 43.02 2.29
779 786 1.326548 GCGGGCGTAAGAGTTTGTATG 59.673 52.381 0.00 0.00 43.02 2.39
780 787 2.613691 CGGGCGTAAGAGTTTGTATGT 58.386 47.619 0.00 0.00 43.02 2.29
781 788 2.997986 CGGGCGTAAGAGTTTGTATGTT 59.002 45.455 0.00 0.00 43.02 2.71
782 789 3.434299 CGGGCGTAAGAGTTTGTATGTTT 59.566 43.478 0.00 0.00 43.02 2.83
783 790 4.626604 CGGGCGTAAGAGTTTGTATGTTTA 59.373 41.667 0.00 0.00 43.02 2.01
784 791 5.292589 CGGGCGTAAGAGTTTGTATGTTTAT 59.707 40.000 0.00 0.00 43.02 1.40
785 792 6.476380 CGGGCGTAAGAGTTTGTATGTTTATA 59.524 38.462 0.00 0.00 43.02 0.98
786 793 7.515684 CGGGCGTAAGAGTTTGTATGTTTATAC 60.516 40.741 0.00 0.00 38.88 1.47
787 794 7.493645 GGGCGTAAGAGTTTGTATGTTTATACT 59.506 37.037 0.00 0.00 39.07 2.12
788 795 8.325997 GGCGTAAGAGTTTGTATGTTTATACTG 58.674 37.037 0.00 0.00 39.07 2.74
789 796 8.866956 GCGTAAGAGTTTGTATGTTTATACTGT 58.133 33.333 0.00 0.00 39.07 3.55
793 800 9.772973 AAGAGTTTGTATGTTTATACTGTGTCA 57.227 29.630 0.00 0.00 39.90 3.58
794 801 9.424319 AGAGTTTGTATGTTTATACTGTGTCAG 57.576 33.333 0.00 0.00 39.90 3.51
795 802 9.419297 GAGTTTGTATGTTTATACTGTGTCAGA 57.581 33.333 3.70 0.00 39.90 3.27
796 803 9.944376 AGTTTGTATGTTTATACTGTGTCAGAT 57.056 29.630 3.70 0.00 39.90 2.90
799 806 9.529325 TTGTATGTTTATACTGTGTCAGATAGC 57.471 33.333 3.70 0.00 39.90 2.97
800 807 8.691797 TGTATGTTTATACTGTGTCAGATAGCA 58.308 33.333 3.70 2.75 39.90 3.49
801 808 9.698309 GTATGTTTATACTGTGTCAGATAGCAT 57.302 33.333 3.70 7.88 36.93 3.79
802 809 8.824159 ATGTTTATACTGTGTCAGATAGCATC 57.176 34.615 3.70 0.00 35.18 3.91
803 810 7.781056 TGTTTATACTGTGTCAGATAGCATCA 58.219 34.615 3.70 0.00 35.18 3.07
804 811 8.257306 TGTTTATACTGTGTCAGATAGCATCAA 58.743 33.333 3.70 0.00 35.18 2.57
805 812 9.265901 GTTTATACTGTGTCAGATAGCATCAAT 57.734 33.333 3.70 0.00 35.18 2.57
806 813 9.481340 TTTATACTGTGTCAGATAGCATCAATC 57.519 33.333 3.70 0.00 35.18 2.67
807 814 5.611128 ACTGTGTCAGATAGCATCAATCT 57.389 39.130 3.70 0.00 35.18 2.40
808 815 5.987098 ACTGTGTCAGATAGCATCAATCTT 58.013 37.500 3.70 0.00 35.18 2.40
809 816 5.816258 ACTGTGTCAGATAGCATCAATCTTG 59.184 40.000 3.70 0.00 35.18 3.02
810 817 5.981174 TGTGTCAGATAGCATCAATCTTGA 58.019 37.500 0.00 0.00 42.14 3.02
811 818 6.706716 CTGTGTCAGATAGCATCAATCTTGAT 59.293 38.462 0.00 0.00 40.04 2.57
812 819 7.052248 TGTGTCAGATAGCATCAATCTTGATT 58.948 34.615 2.68 0.00 45.13 2.57
813 820 7.012044 TGTGTCAGATAGCATCAATCTTGATTG 59.988 37.037 15.07 15.07 45.13 2.67
814 821 7.226128 GTGTCAGATAGCATCAATCTTGATTGA 59.774 37.037 23.00 23.00 45.13 2.57
815 822 7.226128 TGTCAGATAGCATCAATCTTGATTGAC 59.774 37.037 23.16 15.91 45.13 3.18
816 823 7.226128 GTCAGATAGCATCAATCTTGATTGACA 59.774 37.037 23.16 12.28 45.13 3.58
817 824 7.937394 TCAGATAGCATCAATCTTGATTGACAT 59.063 33.333 23.16 15.76 45.13 3.06
818 825 8.017946 CAGATAGCATCAATCTTGATTGACATG 58.982 37.037 23.16 19.48 45.13 3.21
819 826 4.933330 AGCATCAATCTTGATTGACATGC 58.067 39.130 27.36 27.36 45.13 4.06
820 827 3.729217 GCATCAATCTTGATTGACATGCG 59.271 43.478 23.92 14.60 45.13 4.73
821 828 4.732647 GCATCAATCTTGATTGACATGCGT 60.733 41.667 23.92 10.66 45.13 5.24
822 829 4.345271 TCAATCTTGATTGACATGCGTG 57.655 40.909 18.67 3.82 35.80 5.34
823 830 3.752747 TCAATCTTGATTGACATGCGTGT 59.247 39.130 18.67 12.38 35.80 4.49
824 831 4.934602 TCAATCTTGATTGACATGCGTGTA 59.065 37.500 18.67 0.00 35.80 2.90
825 832 4.864916 ATCTTGATTGACATGCGTGTAC 57.135 40.909 12.53 6.55 39.09 2.90
826 833 2.666022 TCTTGATTGACATGCGTGTACG 59.334 45.455 12.53 0.00 39.09 3.67
827 834 1.355005 TGATTGACATGCGTGTACGG 58.645 50.000 12.53 0.00 39.09 4.02
828 835 1.337354 TGATTGACATGCGTGTACGGT 60.337 47.619 12.53 0.00 39.09 4.83
829 836 1.060553 GATTGACATGCGTGTACGGTG 59.939 52.381 12.53 0.00 39.09 4.94
830 837 0.946700 TTGACATGCGTGTACGGTGG 60.947 55.000 12.53 0.00 39.09 4.61
831 838 1.080366 GACATGCGTGTACGGTGGA 60.080 57.895 12.53 0.00 39.09 4.02
832 839 0.459585 GACATGCGTGTACGGTGGAT 60.460 55.000 12.53 0.00 39.09 3.41
833 840 0.459585 ACATGCGTGTACGGTGGATC 60.460 55.000 10.57 0.00 36.63 3.36
834 841 0.459411 CATGCGTGTACGGTGGATCA 60.459 55.000 6.55 0.00 40.23 2.92
835 842 0.248012 ATGCGTGTACGGTGGATCAA 59.752 50.000 6.55 0.00 40.23 2.57
836 843 0.389296 TGCGTGTACGGTGGATCAAG 60.389 55.000 6.55 0.00 40.23 3.02
837 844 1.693083 GCGTGTACGGTGGATCAAGC 61.693 60.000 6.55 0.00 40.23 4.01
838 845 0.389296 CGTGTACGGTGGATCAAGCA 60.389 55.000 0.00 0.00 35.37 3.91
839 846 1.076332 GTGTACGGTGGATCAAGCAC 58.924 55.000 0.00 0.00 0.00 4.40
840 847 0.036765 TGTACGGTGGATCAAGCACC 60.037 55.000 9.03 9.03 35.75 5.01
843 850 2.351276 GGTGGATCAAGCACCGGT 59.649 61.111 0.00 0.00 0.00 5.28
844 851 1.600107 GGTGGATCAAGCACCGGTA 59.400 57.895 6.87 0.00 0.00 4.02
845 852 0.743345 GGTGGATCAAGCACCGGTAC 60.743 60.000 6.87 0.00 0.00 3.34
846 853 0.036765 GTGGATCAAGCACCGGTACA 60.037 55.000 6.87 0.00 0.00 2.90
847 854 0.908910 TGGATCAAGCACCGGTACAT 59.091 50.000 6.87 0.00 0.00 2.29
848 855 1.134521 TGGATCAAGCACCGGTACATC 60.135 52.381 6.87 0.25 0.00 3.06
849 856 1.583054 GATCAAGCACCGGTACATCC 58.417 55.000 6.87 0.00 0.00 3.51
850 857 0.180406 ATCAAGCACCGGTACATCCC 59.820 55.000 6.87 0.00 0.00 3.85
857 864 4.280494 CGGTACATCCCGGCTCCG 62.280 72.222 0.00 0.48 44.32 4.63
919 926 1.005748 CTGTCCACTTCAGCGCAGA 60.006 57.895 11.47 3.41 0.00 4.26
952 959 2.051345 GCAACCAAACTCCGCACG 60.051 61.111 0.00 0.00 0.00 5.34
953 960 2.637025 CAACCAAACTCCGCACGG 59.363 61.111 1.73 1.73 0.00 4.94
954 961 2.593436 AACCAAACTCCGCACGGG 60.593 61.111 9.58 2.66 35.59 5.28
1089 1123 1.306568 GCTCCTCCTCTCCAAGGGT 60.307 63.158 0.00 0.00 46.23 4.34
1098 1132 2.248248 CTCTCCAAGGGTCACTACACA 58.752 52.381 0.00 0.00 0.00 3.72
1164 1215 0.901114 TTCGATCCGTCCTTCCCACA 60.901 55.000 0.00 0.00 0.00 4.17
1185 1240 6.418101 CACATCCAGAAGATTCCTTTTCCTA 58.582 40.000 0.00 0.00 30.59 2.94
1289 1359 4.027572 TGCTGAAAAGTGAAAACGGAAG 57.972 40.909 0.00 0.00 0.00 3.46
1329 1399 2.348411 ACCATATTTGAGGGGAAGCG 57.652 50.000 0.00 0.00 31.20 4.68
1331 1401 0.954452 CATATTTGAGGGGAAGCGGC 59.046 55.000 0.00 0.00 0.00 6.53
1376 1510 6.831353 TCTTGGAAGTTGGAAGTGAACATAAA 59.169 34.615 0.00 0.00 0.00 1.40
1431 1565 6.801539 TTTAGCAGTTTCTTCGAACATGAT 57.198 33.333 0.00 0.00 31.94 2.45
1457 1591 5.569059 GTGTAAATGTTGAGAGGAAATTGCG 59.431 40.000 0.00 0.00 0.00 4.85
1546 1680 5.974751 TCGAAAACTGAAGTAATTTTGCCAC 59.025 36.000 0.00 0.00 0.00 5.01
1809 1947 6.772716 CCTAGCTGGCTTCTTTATAATTTCCA 59.227 38.462 0.00 0.00 0.00 3.53
1862 2000 2.159198 CCTTACCTTACCATACGCACGT 60.159 50.000 0.00 0.00 0.00 4.49
1931 7382 1.964373 CCACCACAAGGCACGTACC 60.964 63.158 0.00 0.00 39.06 3.34
2329 7830 1.909302 CTAGAAGGTGCTGGGGAAAGA 59.091 52.381 0.00 0.00 0.00 2.52
2377 7878 0.736325 ACTACGACAGCATTGCGTCC 60.736 55.000 20.18 7.33 37.86 4.79
2380 7881 3.121030 GACAGCATTGCGTCCGCT 61.121 61.111 13.31 0.00 42.51 5.52
2433 7934 3.170362 CCCTGTCCCTTCTGGCAA 58.830 61.111 0.00 0.00 0.00 4.52
2434 7935 1.001641 CCCTGTCCCTTCTGGCAAG 60.002 63.158 0.00 0.00 0.00 4.01
2509 8010 6.533723 GGTTTTGTGAGGTTTTGAGGTAAAAG 59.466 38.462 0.00 0.00 38.85 2.27
2531 8032 3.950395 GCAAGAGGAAATAGCAGGTGAAT 59.050 43.478 0.00 0.00 0.00 2.57
2541 8042 2.233271 AGCAGGTGAATGAGTGGTTTG 58.767 47.619 0.00 0.00 0.00 2.93
2542 8043 2.158623 AGCAGGTGAATGAGTGGTTTGA 60.159 45.455 0.00 0.00 0.00 2.69
2643 8144 7.255416 GCCTAGATGGATTTTCTCAAGGATTTC 60.255 40.741 0.00 0.00 38.35 2.17
2769 8839 4.142687 ACAAAGTTTGTCGACTTGTTCAGG 60.143 41.667 15.58 3.13 40.56 3.86
2807 8881 7.920738 CAGCCTATCTGAATTTTGTAACCTAC 58.079 38.462 0.00 0.00 45.72 3.18
3005 9085 3.558931 TGTCATGGTGTCTTCAGTTGT 57.441 42.857 0.00 0.00 0.00 3.32
3022 9102 4.919168 CAGTTGTTGCTGTGTCCAATAATG 59.081 41.667 0.00 0.00 0.00 1.90
3147 9227 5.343307 ACATTGTTCTGCCAAGAAACTTT 57.657 34.783 0.00 0.00 44.01 2.66
3198 9378 7.870509 TCAGCTGCTAATTAATCACAGATTT 57.129 32.000 9.47 0.40 0.00 2.17
3242 9761 8.336235 ACTCCCTCCTTTCATAAATCATTTGTA 58.664 33.333 0.00 0.00 0.00 2.41
3257 9958 4.935205 TCATTTGTAGATGGACGTGAAAGG 59.065 41.667 0.00 0.00 0.00 3.11
3259 9960 3.868757 TGTAGATGGACGTGAAAGGAG 57.131 47.619 0.00 0.00 0.00 3.69
3473 10266 9.144298 CCAAGGATGAAGGTAGTAGTATAAAGA 57.856 37.037 0.00 0.00 0.00 2.52
3504 10297 6.695292 CATCTTTGCACAAATAACCTTGAC 57.305 37.500 0.00 0.00 0.00 3.18
3509 10302 3.234386 GCACAAATAACCTTGACGCTTC 58.766 45.455 0.00 0.00 0.00 3.86
4034 10988 3.381272 TGAAACACTTTTCTCTTGCAGGG 59.619 43.478 0.00 0.00 41.64 4.45
4160 11114 3.071602 ACATCTGCAGTTCAGTACCAGTT 59.928 43.478 14.67 0.00 43.32 3.16
4166 11120 5.433526 TGCAGTTCAGTACCAGTTAAAGTT 58.566 37.500 0.00 0.00 0.00 2.66
4322 11357 5.294552 GGTCCATTTATCTTTTCCTGAGACG 59.705 44.000 0.00 0.00 0.00 4.18
4452 11508 9.781834 CGATTTAATTTTGCATGTAGTTTAGGA 57.218 29.630 0.00 0.00 0.00 2.94
4458 11514 8.995027 ATTTTGCATGTAGTTTAGGATATGGA 57.005 30.769 0.00 0.00 0.00 3.41
4497 11564 9.696917 AAAAATTAATGAAAGATGTCACCAGAC 57.303 29.630 0.00 0.00 45.19 3.51
4504 11571 3.526931 AGATGTCACCAGACCATAACG 57.473 47.619 0.00 0.00 44.33 3.18
4574 11672 1.996292 TGTTCTCTCTCCGAATTGCG 58.004 50.000 0.00 0.00 40.47 4.85
4575 11673 1.544246 TGTTCTCTCTCCGAATTGCGA 59.456 47.619 0.00 0.00 44.57 5.10
4576 11674 2.029380 TGTTCTCTCTCCGAATTGCGAA 60.029 45.455 0.00 0.00 44.57 4.70
4577 11675 3.190874 GTTCTCTCTCCGAATTGCGAAT 58.809 45.455 0.00 0.00 44.57 3.34
4578 11676 3.526931 TCTCTCTCCGAATTGCGAATT 57.473 42.857 0.00 0.00 44.57 2.17
4579 11677 3.190079 TCTCTCTCCGAATTGCGAATTG 58.810 45.455 0.00 0.00 44.57 2.32
4580 11678 1.665679 TCTCTCCGAATTGCGAATTGC 59.334 47.619 0.00 0.00 44.57 3.56
4591 11689 2.126467 TGCGAATTGCTTTGCAGTTTC 58.874 42.857 2.11 4.98 44.99 2.78
4594 11692 2.472488 CGAATTGCTTTGCAGTTTCACC 59.528 45.455 13.58 0.00 38.53 4.02
4603 11701 0.868406 GCAGTTTCACCGAAGTGGAG 59.132 55.000 0.00 0.00 44.64 3.86
4793 11891 6.183360 TGGTTCATGTAAGCAGTGAAACAAAT 60.183 34.615 2.87 0.00 44.09 2.32
4865 11965 4.944962 TGAATCTTATGTGTGCCTTTCG 57.055 40.909 0.00 0.00 0.00 3.46
4866 11966 3.126858 TGAATCTTATGTGTGCCTTTCGC 59.873 43.478 0.00 0.00 38.31 4.70
4870 11970 1.890876 TATGTGTGCCTTTCGCTTGT 58.109 45.000 0.00 0.00 38.78 3.16
4958 12129 8.411318 GAACATTTCAGTTCAAAAGACATTGT 57.589 30.769 0.00 0.00 45.53 2.71
4966 12137 8.040132 TCAGTTCAAAAGACATTGTCCATTTTT 58.960 29.630 13.14 10.49 32.18 1.94
4971 12142 7.495279 TCAAAAGACATTGTCCATTTTTCCTTG 59.505 33.333 13.14 4.17 32.18 3.61
4974 12145 5.598005 AGACATTGTCCATTTTTCCTTGACA 59.402 36.000 13.14 0.00 34.38 3.58
5036 12207 2.574824 ACCAGCGGTAAAAATAGGGAGT 59.425 45.455 0.00 0.00 32.11 3.85
5055 12226 2.299297 AGTCCCTATTACGTGCATAGGC 59.701 50.000 22.06 13.71 41.49 3.93
5077 12248 2.602257 GCAAATAGCCACCAAATCCC 57.398 50.000 0.00 0.00 37.23 3.85
5078 12249 1.202405 GCAAATAGCCACCAAATCCCG 60.202 52.381 0.00 0.00 37.23 5.14
5079 12250 1.111277 AAATAGCCACCAAATCCCGC 58.889 50.000 0.00 0.00 0.00 6.13
5080 12251 1.101049 AATAGCCACCAAATCCCGCG 61.101 55.000 0.00 0.00 0.00 6.46
5092 12263 3.679738 CCCGCGCACATTTTGGGT 61.680 61.111 8.75 0.00 40.35 4.51
5094 12265 2.501650 CGCGCACATTTTGGGTCG 60.502 61.111 8.75 0.00 40.35 4.79
5096 12267 2.126502 CGCACATTTTGGGTCGGC 60.127 61.111 0.00 0.00 33.41 5.54
5122 12293 3.971702 GGCCTGGGTGCTCCTGTT 61.972 66.667 4.53 0.00 36.20 3.16
5123 12294 2.116125 GCCTGGGTGCTCCTGTTT 59.884 61.111 4.53 0.00 36.20 2.83
5153 12324 7.764695 TTCGTTTTCTTTCCTTCATTTTTCC 57.235 32.000 0.00 0.00 0.00 3.13
5242 12429 9.647797 AAAAACTTCTTAATTTCGGAAACTGTT 57.352 25.926 5.12 0.00 0.00 3.16
5243 12430 8.851960 AAACTTCTTAATTTCGGAAACTGTTC 57.148 30.769 5.12 0.00 0.00 3.18
5244 12431 7.562454 ACTTCTTAATTTCGGAAACTGTTCA 57.438 32.000 5.12 0.00 35.25 3.18
5245 12432 7.415229 ACTTCTTAATTTCGGAAACTGTTCAC 58.585 34.615 5.12 0.00 35.25 3.18
5246 12433 6.928979 TCTTAATTTCGGAAACTGTTCACA 57.071 33.333 5.12 0.00 35.25 3.58
5247 12434 7.323049 TCTTAATTTCGGAAACTGTTCACAA 57.677 32.000 5.12 0.00 35.25 3.33
5248 12435 7.763356 TCTTAATTTCGGAAACTGTTCACAAA 58.237 30.769 5.12 0.00 35.25 2.83
5249 12436 8.410141 TCTTAATTTCGGAAACTGTTCACAAAT 58.590 29.630 5.12 0.00 35.25 2.32
5251 12438 7.841915 AATTTCGGAAACTGTTCACAAATTT 57.158 28.000 5.12 0.00 35.25 1.82
5257 12444 9.834628 TCGGAAACTGTTCACAAATTTAATATC 57.165 29.630 0.00 0.00 35.25 1.63
5258 12445 9.840427 CGGAAACTGTTCACAAATTTAATATCT 57.160 29.630 0.00 0.00 35.25 1.98
5265 12452 9.632807 TGTTCACAAATTTAATATCTTTTCGGG 57.367 29.630 0.00 0.00 0.00 5.14
5266 12453 9.849166 GTTCACAAATTTAATATCTTTTCGGGA 57.151 29.630 0.00 0.00 0.00 5.14
5268 12455 9.849166 TCACAAATTTAATATCTTTTCGGGAAC 57.151 29.630 0.00 0.00 0.00 3.62
5269 12456 9.855021 CACAAATTTAATATCTTTTCGGGAACT 57.145 29.630 0.00 0.00 0.00 3.01
5302 12489 8.298854 TGTTCATGAATTTGTAAGATGTTCAGG 58.701 33.333 12.12 0.00 32.93 3.86
5304 12491 8.044060 TCATGAATTTGTAAGATGTTCAGGAC 57.956 34.615 0.00 0.00 35.50 3.85
5308 12495 7.939039 TGAATTTGTAAGATGTTCAGGACTTCT 59.061 33.333 0.00 0.00 42.68 2.85
5317 12504 8.503458 AGATGTTCAGGACTTCTTAAATCATG 57.497 34.615 0.00 0.00 39.09 3.07
5318 12505 8.324306 AGATGTTCAGGACTTCTTAAATCATGA 58.676 33.333 0.00 0.00 39.09 3.07
5319 12506 8.868522 ATGTTCAGGACTTCTTAAATCATGAA 57.131 30.769 0.00 0.00 39.92 2.57
5320 12507 8.868522 TGTTCAGGACTTCTTAAATCATGAAT 57.131 30.769 0.00 0.00 42.88 2.57
5321 12508 9.300681 TGTTCAGGACTTCTTAAATCATGAATT 57.699 29.630 0.00 0.00 42.88 2.17
5322 12509 9.780413 GTTCAGGACTTCTTAAATCATGAATTC 57.220 33.333 0.00 0.00 42.88 2.17
5323 12510 9.519191 TTCAGGACTTCTTAAATCATGAATTCA 57.481 29.630 11.26 11.26 38.00 2.57
5324 12511 9.519191 TCAGGACTTCTTAAATCATGAATTCAA 57.481 29.630 13.09 0.00 30.78 2.69
5353 12540 9.959749 AAATGTTCACGAAACTTAACAATATGT 57.040 25.926 0.00 0.00 38.76 2.29
5354 12541 9.959749 AATGTTCACGAAACTTAACAATATGTT 57.040 25.926 0.99 0.99 40.16 2.71
5422 12609 8.451687 TTGATTAGAAAATGTTTGCTGATTCG 57.548 30.769 0.00 0.00 0.00 3.34
5423 12610 7.815641 TGATTAGAAAATGTTTGCTGATTCGA 58.184 30.769 0.00 0.00 0.00 3.71
5424 12611 8.296000 TGATTAGAAAATGTTTGCTGATTCGAA 58.704 29.630 0.00 0.00 0.00 3.71
5425 12612 9.128107 GATTAGAAAATGTTTGCTGATTCGAAA 57.872 29.630 0.00 0.00 0.00 3.46
5426 12613 8.864069 TTAGAAAATGTTTGCTGATTCGAAAA 57.136 26.923 0.00 0.00 0.00 2.29
5427 12614 7.769272 AGAAAATGTTTGCTGATTCGAAAAA 57.231 28.000 0.00 0.00 0.00 1.94
5428 12615 8.369218 AGAAAATGTTTGCTGATTCGAAAAAT 57.631 26.923 0.00 0.00 0.00 1.82
5429 12616 8.277713 AGAAAATGTTTGCTGATTCGAAAAATG 58.722 29.630 0.00 0.00 0.00 2.32
5430 12617 4.970472 TGTTTGCTGATTCGAAAAATGC 57.030 36.364 0.00 5.43 0.00 3.56
5431 12618 4.619973 TGTTTGCTGATTCGAAAAATGCT 58.380 34.783 0.00 0.00 0.00 3.79
5432 12619 4.681025 TGTTTGCTGATTCGAAAAATGCTC 59.319 37.500 0.00 0.00 0.00 4.26
5596 12783 8.855279 TGTGAATTTAAAGTTTGTTCTTGTTCG 58.145 29.630 0.00 0.00 0.00 3.95
5597 12784 7.839358 GTGAATTTAAAGTTTGTTCTTGTTCGC 59.161 33.333 0.00 0.00 0.00 4.70
5598 12785 7.757624 TGAATTTAAAGTTTGTTCTTGTTCGCT 59.242 29.630 0.00 0.00 0.00 4.93
5601 12788 9.744468 ATTTAAAGTTTGTTCTTGTTCGCTAAT 57.256 25.926 0.00 0.00 0.00 1.73
5602 12789 9.575783 TTTAAAGTTTGTTCTTGTTCGCTAATT 57.424 25.926 0.00 0.00 0.00 1.40
5603 12790 7.679659 AAAGTTTGTTCTTGTTCGCTAATTC 57.320 32.000 0.00 0.00 0.00 2.17
5605 12792 6.791303 AGTTTGTTCTTGTTCGCTAATTCAA 58.209 32.000 0.00 0.00 0.00 2.69
5608 12795 6.125327 TGTTCTTGTTCGCTAATTCAACAA 57.875 33.333 0.00 0.00 37.62 2.83
5609 12796 6.556212 TGTTCTTGTTCGCTAATTCAACAAA 58.444 32.000 0.00 0.00 39.04 2.83
5610 12797 7.199766 TGTTCTTGTTCGCTAATTCAACAAAT 58.800 30.769 0.00 0.00 39.04 2.32
5611 12798 7.167302 TGTTCTTGTTCGCTAATTCAACAAATG 59.833 33.333 0.00 0.00 39.04 2.32
5612 12799 6.734137 TCTTGTTCGCTAATTCAACAAATGT 58.266 32.000 0.00 0.00 39.04 2.71
5613 12800 7.199766 TCTTGTTCGCTAATTCAACAAATGTT 58.800 30.769 0.00 0.00 39.04 2.71
5615 12802 5.623264 TGTTCGCTAATTCAACAAATGTTCG 59.377 36.000 0.00 0.00 35.83 3.95
5616 12803 5.351233 TCGCTAATTCAACAAATGTTCGT 57.649 34.783 0.00 0.00 35.83 3.85
5618 12805 4.320690 CGCTAATTCAACAAATGTTCGTGG 59.679 41.667 0.00 0.00 35.83 4.94
5619 12806 5.457140 GCTAATTCAACAAATGTTCGTGGA 58.543 37.500 0.00 0.00 35.83 4.02
5620 12807 6.092748 GCTAATTCAACAAATGTTCGTGGAT 58.907 36.000 0.00 0.00 35.83 3.41
5621 12808 6.033831 GCTAATTCAACAAATGTTCGTGGATG 59.966 38.462 0.00 0.00 35.83 3.51
5655 16022 8.506168 ACTTTTGATTTTCTTGTAGTGTCTGA 57.494 30.769 0.00 0.00 0.00 3.27
5658 16025 8.506168 TTTGATTTTCTTGTAGTGTCTGAAGT 57.494 30.769 0.00 0.00 0.00 3.01
5663 16030 8.958119 TTTTCTTGTAGTGTCTGAAGTACAAT 57.042 30.769 14.70 0.00 42.31 2.71
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.069049 GACCCATGTGTGCAGCTTTTT 59.931 47.619 0.00 0.00 0.00 1.94
5 6 0.178981 AGACCCATGTGTGCAGCTTT 60.179 50.000 0.00 0.00 0.00 3.51
7 8 0.914644 ATAGACCCATGTGTGCAGCT 59.085 50.000 0.00 0.00 0.00 4.24
10 11 1.627834 TGACATAGACCCATGTGTGCA 59.372 47.619 0.00 0.00 39.25 4.57
12 13 3.616956 ACTGACATAGACCCATGTGTG 57.383 47.619 0.00 0.00 39.25 3.82
13 14 4.353777 AGTACTGACATAGACCCATGTGT 58.646 43.478 0.00 0.00 39.25 3.72
14 15 5.594725 AGTAGTACTGACATAGACCCATGTG 59.405 44.000 5.39 0.00 39.25 3.21
15 16 5.767670 AGTAGTACTGACATAGACCCATGT 58.232 41.667 5.39 0.00 41.83 3.21
16 17 5.241949 GGAGTAGTACTGACATAGACCCATG 59.758 48.000 7.76 0.00 0.00 3.66
17 18 5.386924 GGAGTAGTACTGACATAGACCCAT 58.613 45.833 7.76 0.00 0.00 4.00
18 19 4.386088 GGGAGTAGTACTGACATAGACCCA 60.386 50.000 7.76 0.00 33.48 4.51
20 21 5.051409 AGGGAGTAGTACTGACATAGACC 57.949 47.826 7.76 0.00 0.00 3.85
22 23 4.202336 CGGAGGGAGTAGTACTGACATAGA 60.202 50.000 7.76 0.00 0.00 1.98
23 24 4.066490 CGGAGGGAGTAGTACTGACATAG 58.934 52.174 7.76 0.00 0.00 2.23
24 25 3.457380 ACGGAGGGAGTAGTACTGACATA 59.543 47.826 7.76 0.00 0.00 2.29
25 26 2.241685 ACGGAGGGAGTAGTACTGACAT 59.758 50.000 7.76 0.00 0.00 3.06
26 27 1.632409 ACGGAGGGAGTAGTACTGACA 59.368 52.381 7.76 0.00 0.00 3.58
27 28 2.287769 GACGGAGGGAGTAGTACTGAC 58.712 57.143 7.76 0.13 0.00 3.51
28 29 1.211457 GGACGGAGGGAGTAGTACTGA 59.789 57.143 7.76 0.00 0.00 3.41
29 30 1.677942 GGACGGAGGGAGTAGTACTG 58.322 60.000 7.76 0.00 0.00 2.74
30 31 0.550432 GGGACGGAGGGAGTAGTACT 59.450 60.000 1.37 1.37 0.00 2.73
31 32 3.108292 GGGACGGAGGGAGTAGTAC 57.892 63.158 0.00 0.00 0.00 2.73
45 46 6.039717 TGGACACTACACTTATATAACGGGAC 59.960 42.308 0.00 0.00 0.00 4.46
46 47 6.128486 TGGACACTACACTTATATAACGGGA 58.872 40.000 0.00 0.00 0.00 5.14
47 48 6.395426 TGGACACTACACTTATATAACGGG 57.605 41.667 0.00 0.00 0.00 5.28
48 49 7.709947 TCTTGGACACTACACTTATATAACGG 58.290 38.462 0.00 0.00 0.00 4.44
49 50 9.577110 TTTCTTGGACACTACACTTATATAACG 57.423 33.333 0.00 0.00 0.00 3.18
54 55 9.706691 CTTTCTTTCTTGGACACTACACTTATA 57.293 33.333 0.00 0.00 0.00 0.98
55 56 8.211629 ACTTTCTTTCTTGGACACTACACTTAT 58.788 33.333 0.00 0.00 0.00 1.73
56 57 7.562135 ACTTTCTTTCTTGGACACTACACTTA 58.438 34.615 0.00 0.00 0.00 2.24
57 58 6.415573 ACTTTCTTTCTTGGACACTACACTT 58.584 36.000 0.00 0.00 0.00 3.16
58 59 5.990668 ACTTTCTTTCTTGGACACTACACT 58.009 37.500 0.00 0.00 0.00 3.55
59 60 6.679327 AACTTTCTTTCTTGGACACTACAC 57.321 37.500 0.00 0.00 0.00 2.90
60 61 6.482308 GCTAACTTTCTTTCTTGGACACTACA 59.518 38.462 0.00 0.00 0.00 2.74
61 62 6.346678 CGCTAACTTTCTTTCTTGGACACTAC 60.347 42.308 0.00 0.00 0.00 2.73
62 63 5.694910 CGCTAACTTTCTTTCTTGGACACTA 59.305 40.000 0.00 0.00 0.00 2.74
63 64 4.511826 CGCTAACTTTCTTTCTTGGACACT 59.488 41.667 0.00 0.00 0.00 3.55
64 65 4.272748 ACGCTAACTTTCTTTCTTGGACAC 59.727 41.667 0.00 0.00 0.00 3.67
65 66 4.448210 ACGCTAACTTTCTTTCTTGGACA 58.552 39.130 0.00 0.00 0.00 4.02
66 67 5.419760 AACGCTAACTTTCTTTCTTGGAC 57.580 39.130 0.00 0.00 0.00 4.02
199 200 8.264347 ACAAACCCTAACAAGATTGAAAACAAT 58.736 29.630 0.00 0.00 0.00 2.71
202 204 7.039270 ACACAAACCCTAACAAGATTGAAAAC 58.961 34.615 0.00 0.00 0.00 2.43
250 252 1.333636 CCATCTTCAGGGAGCCGTCT 61.334 60.000 0.00 0.00 0.00 4.18
252 254 0.909610 TTCCATCTTCAGGGAGCCGT 60.910 55.000 0.00 0.00 34.02 5.68
391 393 3.425359 CCGAATACACACGAACGTAGACT 60.425 47.826 0.00 0.00 0.00 3.24
408 410 2.038387 CGGAAGGATCCAAACCGAAT 57.962 50.000 28.08 0.00 46.97 3.34
474 476 1.068121 GTGCTAAGGCCCCATAGGAT 58.932 55.000 0.00 0.00 38.24 3.24
706 713 8.755018 CGTCCCGTTATATAAGAACGTTTTTAT 58.245 33.333 22.86 22.86 46.37 1.40
707 714 7.221838 CCGTCCCGTTATATAAGAACGTTTTTA 59.778 37.037 13.02 13.02 46.37 1.52
708 715 6.035975 CCGTCCCGTTATATAAGAACGTTTTT 59.964 38.462 17.20 9.22 46.37 1.94
709 716 5.519927 CCGTCCCGTTATATAAGAACGTTTT 59.480 40.000 17.20 0.00 46.37 2.43
710 717 5.043248 CCGTCCCGTTATATAAGAACGTTT 58.957 41.667 17.20 0.00 46.37 3.60
711 718 4.338118 TCCGTCCCGTTATATAAGAACGTT 59.662 41.667 17.20 0.00 46.37 3.99
712 719 3.882888 TCCGTCCCGTTATATAAGAACGT 59.117 43.478 17.20 0.00 46.37 3.99
714 721 4.321527 CCCTCCGTCCCGTTATATAAGAAC 60.322 50.000 0.00 0.00 0.00 3.01
715 722 3.828451 CCCTCCGTCCCGTTATATAAGAA 59.172 47.826 0.00 0.00 0.00 2.52
716 723 3.074390 TCCCTCCGTCCCGTTATATAAGA 59.926 47.826 0.00 0.00 0.00 2.10
717 724 3.424703 TCCCTCCGTCCCGTTATATAAG 58.575 50.000 0.00 0.00 0.00 1.73
718 725 3.181429 ACTCCCTCCGTCCCGTTATATAA 60.181 47.826 0.00 0.00 0.00 0.98
719 726 2.376518 ACTCCCTCCGTCCCGTTATATA 59.623 50.000 0.00 0.00 0.00 0.86
720 727 1.146566 ACTCCCTCCGTCCCGTTATAT 59.853 52.381 0.00 0.00 0.00 0.86
721 728 0.552848 ACTCCCTCCGTCCCGTTATA 59.447 55.000 0.00 0.00 0.00 0.98
722 729 0.552848 TACTCCCTCCGTCCCGTTAT 59.447 55.000 0.00 0.00 0.00 1.89
723 730 0.552848 ATACTCCCTCCGTCCCGTTA 59.447 55.000 0.00 0.00 0.00 3.18
724 731 0.325016 AATACTCCCTCCGTCCCGTT 60.325 55.000 0.00 0.00 0.00 4.44
725 732 0.325016 AAATACTCCCTCCGTCCCGT 60.325 55.000 0.00 0.00 0.00 5.28
726 733 0.104304 CAAATACTCCCTCCGTCCCG 59.896 60.000 0.00 0.00 0.00 5.14
727 734 1.138464 GACAAATACTCCCTCCGTCCC 59.862 57.143 0.00 0.00 0.00 4.46
728 735 1.829222 TGACAAATACTCCCTCCGTCC 59.171 52.381 0.00 0.00 0.00 4.79
729 736 2.496470 ACTGACAAATACTCCCTCCGTC 59.504 50.000 0.00 0.00 0.00 4.79
730 737 2.537143 ACTGACAAATACTCCCTCCGT 58.463 47.619 0.00 0.00 0.00 4.69
731 738 3.262420 CAACTGACAAATACTCCCTCCG 58.738 50.000 0.00 0.00 0.00 4.63
732 739 4.287766 ACAACTGACAAATACTCCCTCC 57.712 45.455 0.00 0.00 0.00 4.30
733 740 7.103641 TGAATACAACTGACAAATACTCCCTC 58.896 38.462 0.00 0.00 0.00 4.30
734 741 7.016153 TGAATACAACTGACAAATACTCCCT 57.984 36.000 0.00 0.00 0.00 4.20
735 742 6.183360 GCTGAATACAACTGACAAATACTCCC 60.183 42.308 0.00 0.00 0.00 4.30
736 743 6.455646 CGCTGAATACAACTGACAAATACTCC 60.456 42.308 0.00 0.00 0.00 3.85
737 744 6.455646 CCGCTGAATACAACTGACAAATACTC 60.456 42.308 0.00 0.00 0.00 2.59
738 745 5.351465 CCGCTGAATACAACTGACAAATACT 59.649 40.000 0.00 0.00 0.00 2.12
739 746 5.447279 CCCGCTGAATACAACTGACAAATAC 60.447 44.000 0.00 0.00 0.00 1.89
740 747 4.634004 CCCGCTGAATACAACTGACAAATA 59.366 41.667 0.00 0.00 0.00 1.40
741 748 3.440173 CCCGCTGAATACAACTGACAAAT 59.560 43.478 0.00 0.00 0.00 2.32
742 749 2.811431 CCCGCTGAATACAACTGACAAA 59.189 45.455 0.00 0.00 0.00 2.83
743 750 2.422597 CCCGCTGAATACAACTGACAA 58.577 47.619 0.00 0.00 0.00 3.18
744 751 1.943968 GCCCGCTGAATACAACTGACA 60.944 52.381 0.00 0.00 0.00 3.58
745 752 0.727398 GCCCGCTGAATACAACTGAC 59.273 55.000 0.00 0.00 0.00 3.51
746 753 0.739462 CGCCCGCTGAATACAACTGA 60.739 55.000 0.00 0.00 0.00 3.41
747 754 1.019278 ACGCCCGCTGAATACAACTG 61.019 55.000 0.00 0.00 0.00 3.16
748 755 0.533491 TACGCCCGCTGAATACAACT 59.467 50.000 0.00 0.00 0.00 3.16
749 756 1.326548 CTTACGCCCGCTGAATACAAC 59.673 52.381 0.00 0.00 0.00 3.32
750 757 1.205179 TCTTACGCCCGCTGAATACAA 59.795 47.619 0.00 0.00 0.00 2.41
751 758 0.818938 TCTTACGCCCGCTGAATACA 59.181 50.000 0.00 0.00 0.00 2.29
752 759 1.202382 ACTCTTACGCCCGCTGAATAC 60.202 52.381 0.00 0.00 0.00 1.89
753 760 1.108776 ACTCTTACGCCCGCTGAATA 58.891 50.000 0.00 0.00 0.00 1.75
754 761 0.249398 AACTCTTACGCCCGCTGAAT 59.751 50.000 0.00 0.00 0.00 2.57
755 762 0.034337 AAACTCTTACGCCCGCTGAA 59.966 50.000 0.00 0.00 0.00 3.02
756 763 0.669318 CAAACTCTTACGCCCGCTGA 60.669 55.000 0.00 0.00 0.00 4.26
757 764 0.949105 ACAAACTCTTACGCCCGCTG 60.949 55.000 0.00 0.00 0.00 5.18
758 765 0.604578 TACAAACTCTTACGCCCGCT 59.395 50.000 0.00 0.00 0.00 5.52
759 766 1.326548 CATACAAACTCTTACGCCCGC 59.673 52.381 0.00 0.00 0.00 6.13
760 767 2.613691 ACATACAAACTCTTACGCCCG 58.386 47.619 0.00 0.00 0.00 6.13
761 768 6.673154 ATAAACATACAAACTCTTACGCCC 57.327 37.500 0.00 0.00 0.00 6.13
762 769 8.325997 CAGTATAAACATACAAACTCTTACGCC 58.674 37.037 0.00 0.00 0.00 5.68
763 770 8.866956 ACAGTATAAACATACAAACTCTTACGC 58.133 33.333 0.00 0.00 0.00 4.42
767 774 9.772973 TGACACAGTATAAACATACAAACTCTT 57.227 29.630 0.00 0.00 0.00 2.85
768 775 9.424319 CTGACACAGTATAAACATACAAACTCT 57.576 33.333 0.00 0.00 0.00 3.24
769 776 9.419297 TCTGACACAGTATAAACATACAAACTC 57.581 33.333 0.00 0.00 32.61 3.01
770 777 9.944376 ATCTGACACAGTATAAACATACAAACT 57.056 29.630 0.00 0.00 32.61 2.66
773 780 9.529325 GCTATCTGACACAGTATAAACATACAA 57.471 33.333 0.00 0.00 32.61 2.41
774 781 8.691797 TGCTATCTGACACAGTATAAACATACA 58.308 33.333 0.00 0.00 32.61 2.29
775 782 9.698309 ATGCTATCTGACACAGTATAAACATAC 57.302 33.333 0.00 0.00 32.61 2.39
776 783 9.914131 GATGCTATCTGACACAGTATAAACATA 57.086 33.333 0.00 0.00 32.61 2.29
777 784 8.424133 TGATGCTATCTGACACAGTATAAACAT 58.576 33.333 0.00 0.00 32.61 2.71
778 785 7.781056 TGATGCTATCTGACACAGTATAAACA 58.219 34.615 0.00 0.00 32.61 2.83
779 786 8.648557 TTGATGCTATCTGACACAGTATAAAC 57.351 34.615 0.00 0.00 32.61 2.01
780 787 9.481340 GATTGATGCTATCTGACACAGTATAAA 57.519 33.333 0.00 0.00 32.61 1.40
781 788 8.864087 AGATTGATGCTATCTGACACAGTATAA 58.136 33.333 0.00 0.00 31.32 0.98
782 789 8.414629 AGATTGATGCTATCTGACACAGTATA 57.585 34.615 0.00 0.00 31.32 1.47
783 790 7.300556 AGATTGATGCTATCTGACACAGTAT 57.699 36.000 0.00 0.00 31.32 2.12
784 791 6.721704 AGATTGATGCTATCTGACACAGTA 57.278 37.500 0.00 0.00 31.32 2.74
785 792 5.611128 AGATTGATGCTATCTGACACAGT 57.389 39.130 0.00 0.00 31.32 3.55
786 793 6.047231 TCAAGATTGATGCTATCTGACACAG 58.953 40.000 0.00 0.00 32.82 3.66
787 794 5.981174 TCAAGATTGATGCTATCTGACACA 58.019 37.500 0.00 0.00 32.82 3.72
788 795 7.493743 AATCAAGATTGATGCTATCTGACAC 57.506 36.000 8.76 0.00 46.60 3.67
803 810 4.201714 CGTACACGCATGTCAATCAAGATT 60.202 41.667 0.00 0.00 40.48 2.40
804 811 3.306973 CGTACACGCATGTCAATCAAGAT 59.693 43.478 0.00 0.00 40.48 2.40
805 812 2.666022 CGTACACGCATGTCAATCAAGA 59.334 45.455 0.00 0.00 40.48 3.02
806 813 2.222796 CCGTACACGCATGTCAATCAAG 60.223 50.000 0.00 0.00 40.48 3.02
807 814 1.729517 CCGTACACGCATGTCAATCAA 59.270 47.619 0.00 0.00 40.48 2.57
808 815 1.337354 ACCGTACACGCATGTCAATCA 60.337 47.619 0.00 0.00 40.48 2.57
809 816 1.060553 CACCGTACACGCATGTCAATC 59.939 52.381 0.00 0.00 40.48 2.67
810 817 1.075542 CACCGTACACGCATGTCAAT 58.924 50.000 0.00 0.00 40.48 2.57
811 818 0.946700 CCACCGTACACGCATGTCAA 60.947 55.000 0.00 0.00 40.48 3.18
812 819 1.373622 CCACCGTACACGCATGTCA 60.374 57.895 0.00 0.00 40.48 3.58
813 820 0.459585 ATCCACCGTACACGCATGTC 60.460 55.000 0.00 0.00 40.48 3.06
814 821 0.459585 GATCCACCGTACACGCATGT 60.460 55.000 0.00 0.00 43.30 3.21
815 822 0.459411 TGATCCACCGTACACGCATG 60.459 55.000 0.00 0.00 38.18 4.06
816 823 0.248012 TTGATCCACCGTACACGCAT 59.752 50.000 0.00 0.00 38.18 4.73
817 824 0.389296 CTTGATCCACCGTACACGCA 60.389 55.000 0.00 0.00 38.18 5.24
818 825 1.693083 GCTTGATCCACCGTACACGC 61.693 60.000 0.00 0.00 38.18 5.34
819 826 0.389296 TGCTTGATCCACCGTACACG 60.389 55.000 0.00 0.00 39.44 4.49
820 827 1.076332 GTGCTTGATCCACCGTACAC 58.924 55.000 0.00 0.00 0.00 2.90
821 828 0.036765 GGTGCTTGATCCACCGTACA 60.037 55.000 4.16 0.00 42.86 2.90
822 829 2.763651 GGTGCTTGATCCACCGTAC 58.236 57.895 4.16 0.00 42.86 3.67
827 834 0.036765 TGTACCGGTGCTTGATCCAC 60.037 55.000 23.67 7.81 0.00 4.02
828 835 0.908910 ATGTACCGGTGCTTGATCCA 59.091 50.000 23.67 1.33 0.00 3.41
829 836 1.583054 GATGTACCGGTGCTTGATCC 58.417 55.000 23.67 1.94 0.00 3.36
830 837 1.583054 GGATGTACCGGTGCTTGATC 58.417 55.000 23.67 16.94 0.00 2.92
831 838 0.180406 GGGATGTACCGGTGCTTGAT 59.820 55.000 23.67 8.98 40.11 2.57
832 839 1.600107 GGGATGTACCGGTGCTTGA 59.400 57.895 23.67 3.75 40.11 3.02
833 840 4.218722 GGGATGTACCGGTGCTTG 57.781 61.111 23.67 0.00 40.11 4.01
863 870 2.711885 CGGTCGAGCGAAAAAGTTTTT 58.288 42.857 31.72 13.35 0.00 1.94
864 871 1.596220 GCGGTCGAGCGAAAAAGTTTT 60.596 47.619 38.14 0.00 0.00 2.43
865 872 0.041576 GCGGTCGAGCGAAAAAGTTT 60.042 50.000 38.14 0.00 0.00 2.66
866 873 0.878961 AGCGGTCGAGCGAAAAAGTT 60.879 50.000 38.14 12.14 43.00 2.66
867 874 1.282930 GAGCGGTCGAGCGAAAAAGT 61.283 55.000 38.14 15.43 43.00 2.66
868 875 1.009389 AGAGCGGTCGAGCGAAAAAG 61.009 55.000 38.14 10.83 43.00 2.27
869 876 1.006571 AGAGCGGTCGAGCGAAAAA 60.007 52.632 38.14 0.00 43.00 1.94
870 877 1.733041 CAGAGCGGTCGAGCGAAAA 60.733 57.895 38.14 0.00 43.00 2.29
871 878 2.126463 CAGAGCGGTCGAGCGAAA 60.126 61.111 38.14 0.00 43.00 3.46
872 879 4.116328 CCAGAGCGGTCGAGCGAA 62.116 66.667 38.14 0.00 43.00 4.70
874 881 3.417275 AATCCAGAGCGGTCGAGCG 62.417 63.158 31.08 31.08 43.00 5.03
875 882 1.880340 CAATCCAGAGCGGTCGAGC 60.880 63.158 9.28 4.06 35.57 5.03
956 963 3.075005 TAGTCCCCTCTGCCGTGC 61.075 66.667 0.00 0.00 0.00 5.34
957 964 1.379977 TCTAGTCCCCTCTGCCGTG 60.380 63.158 0.00 0.00 0.00 4.94
958 965 1.076632 CTCTAGTCCCCTCTGCCGT 60.077 63.158 0.00 0.00 0.00 5.68
959 966 2.494530 GCTCTAGTCCCCTCTGCCG 61.495 68.421 0.00 0.00 0.00 5.69
960 967 2.137528 GGCTCTAGTCCCCTCTGCC 61.138 68.421 0.00 0.00 0.00 4.85
992 999 3.880846 CCGCCGCCATGCTCTTTC 61.881 66.667 0.00 0.00 0.00 2.62
1089 1123 2.959372 CCGCGGACTGTGTAGTGA 59.041 61.111 24.07 0.00 37.25 3.41
1164 1215 7.065504 CCAATAGGAAAAGGAATCTTCTGGAT 58.934 38.462 0.00 0.00 36.89 3.41
1264 1334 3.923461 CCGTTTTCACTTTTCAGCAACAA 59.077 39.130 0.00 0.00 0.00 2.83
1289 1359 2.674220 CCTGGACTGCTTCCCCTCC 61.674 68.421 2.82 0.00 45.17 4.30
1329 1399 5.188948 AGAACAACATTATTTTTAGGGGGCC 59.811 40.000 0.00 0.00 0.00 5.80
1331 1401 7.038658 TCCAAGAACAACATTATTTTTAGGGGG 60.039 37.037 0.00 0.00 0.00 5.40
1394 1528 6.502136 AACTGCTAAAAAGCATCTAACTCC 57.498 37.500 0.00 0.00 44.47 3.85
1397 1531 7.269297 CGAAGAAACTGCTAAAAAGCATCTAAC 59.731 37.037 0.00 0.33 44.47 2.34
1431 1565 6.922957 GCAATTTCCTCTCAACATTTACACAA 59.077 34.615 0.00 0.00 0.00 3.33
1457 1591 1.084370 CGTCGGAGCTCACAATTCCC 61.084 60.000 17.19 0.00 0.00 3.97
1589 1723 9.601217 AACAGGTTCTATGTATTGTGAATACTC 57.399 33.333 7.73 0.00 43.27 2.59
1801 1939 3.623960 CGGGAATAACGCACTGGAAATTA 59.376 43.478 0.00 0.00 0.00 1.40
1809 1947 1.449601 CTGCCGGGAATAACGCACT 60.450 57.895 2.18 0.00 0.00 4.40
1862 2000 8.514594 CAGTTTTTGCATTCTCCTGTTCTTATA 58.485 33.333 0.00 0.00 0.00 0.98
2192 7650 3.261137 TGGGTCCATCACAACAACGTATA 59.739 43.478 0.00 0.00 0.00 1.47
2377 7878 2.962827 CTCACAGCCAGCAACAGCG 61.963 63.158 0.00 0.00 0.00 5.18
2380 7881 2.113774 CCCTCACAGCCAGCAACA 59.886 61.111 0.00 0.00 0.00 3.33
2433 7934 2.338809 TCACCTCAGGATTGGTTGACT 58.661 47.619 0.00 0.00 33.75 3.41
2434 7935 2.859165 TCACCTCAGGATTGGTTGAC 57.141 50.000 0.00 0.00 33.75 3.18
2481 7982 3.488553 CCTCAAAACCTCACAAAACCGTC 60.489 47.826 0.00 0.00 0.00 4.79
2509 8010 2.991250 TCACCTGCTATTTCCTCTTGC 58.009 47.619 0.00 0.00 0.00 4.01
2531 8032 1.270571 TGCGCTATGTCAAACCACTCA 60.271 47.619 9.73 0.00 0.00 3.41
2541 8042 4.358851 TGCCAATAAAATTGCGCTATGTC 58.641 39.130 9.73 0.00 0.00 3.06
2542 8043 4.383850 TGCCAATAAAATTGCGCTATGT 57.616 36.364 9.73 0.00 0.00 2.29
2769 8839 3.441572 AGATAGGCTGATGTTGCACAAAC 59.558 43.478 0.00 0.00 39.41 2.93
3005 9085 5.009631 AGTTAGCATTATTGGACACAGCAA 58.990 37.500 0.00 0.00 0.00 3.91
3022 9102 3.639672 TTTACCCTTAGGCCAGTTAGC 57.360 47.619 5.01 0.00 36.11 3.09
3147 9227 5.475719 AGCACGCTATACTGTGAGTTAAAA 58.524 37.500 4.22 0.00 38.36 1.52
3152 9232 3.014623 TGTAGCACGCTATACTGTGAGT 58.985 45.455 1.43 0.00 38.36 3.41
3156 9238 4.230314 CTGATGTAGCACGCTATACTGT 57.770 45.455 1.43 0.00 0.00 3.55
3242 9761 1.938585 TCCTCCTTTCACGTCCATCT 58.061 50.000 0.00 0.00 0.00 2.90
3257 9958 3.127721 GCAGTGCTATTTGGTTCTTCCTC 59.872 47.826 8.18 0.00 37.07 3.71
3259 9960 3.084786 AGCAGTGCTATTTGGTTCTTCC 58.915 45.455 18.11 0.00 36.99 3.46
3501 10294 8.367911 AGAACATCATATTATTAGGAAGCGTCA 58.632 33.333 1.14 0.00 0.00 4.35
3504 10297 9.208022 TGAAGAACATCATATTATTAGGAAGCG 57.792 33.333 0.00 0.00 0.00 4.68
3604 10440 1.269206 CCTGCCACAATGACAACACAC 60.269 52.381 0.00 0.00 0.00 3.82
4034 10988 9.148104 AGTTTATTTTCTACAGTATCACGTTCC 57.852 33.333 0.00 0.00 0.00 3.62
4166 11120 9.920133 GTCTTCAGTATGCTTATCATATCAGAA 57.080 33.333 0.00 0.00 39.63 3.02
4322 11357 4.634883 CCCAAGTGATGCTGATATATGCTC 59.365 45.833 0.00 0.00 0.00 4.26
4497 11564 5.107989 CGGATCGTATCAAAGAACGTTATGG 60.108 44.000 0.00 0.00 39.99 2.74
4504 11571 3.797256 CAGGACGGATCGTATCAAAGAAC 59.203 47.826 0.00 0.00 41.37 3.01
4574 11672 2.472488 CGGTGAAACTGCAAAGCAATTC 59.528 45.455 9.12 9.12 38.41 2.17
4575 11673 2.100584 TCGGTGAAACTGCAAAGCAATT 59.899 40.909 0.00 0.00 44.90 2.32
4576 11674 1.680735 TCGGTGAAACTGCAAAGCAAT 59.319 42.857 0.00 0.00 44.90 3.56
4577 11675 1.098869 TCGGTGAAACTGCAAAGCAA 58.901 45.000 0.00 0.00 44.90 3.91
4578 11676 1.065401 CTTCGGTGAAACTGCAAAGCA 59.935 47.619 0.00 0.00 44.90 3.91
4579 11677 1.065551 ACTTCGGTGAAACTGCAAAGC 59.934 47.619 0.00 0.00 44.90 3.51
4591 11689 2.629051 GTATTTCCCTCCACTTCGGTG 58.371 52.381 0.00 0.00 44.92 4.94
4594 11692 3.560636 ATGGTATTTCCCTCCACTTCG 57.439 47.619 0.00 0.00 33.91 3.79
4603 11701 7.447594 TCTCCGAACTATAAATGGTATTTCCC 58.552 38.462 0.00 0.00 34.77 3.97
4793 11891 4.443621 TGACGATTGTGTCACCAACTTAA 58.556 39.130 0.00 0.00 43.62 1.85
4865 11965 2.288666 TCAAGTCAAGACACCACAAGC 58.711 47.619 2.72 0.00 0.00 4.01
4866 11966 2.874701 CCTCAAGTCAAGACACCACAAG 59.125 50.000 2.72 0.00 0.00 3.16
4870 11970 1.837439 ACACCTCAAGTCAAGACACCA 59.163 47.619 2.72 0.00 0.00 4.17
4951 12122 5.841810 TGTCAAGGAAAAATGGACAATGTC 58.158 37.500 4.51 4.51 35.72 3.06
4971 12142 6.040054 TGCTTTTTCTAAAGGTTTACCCTGTC 59.960 38.462 0.00 0.00 45.47 3.51
5036 12207 1.621814 GGCCTATGCACGTAATAGGGA 59.378 52.381 26.27 3.04 44.72 4.20
5044 12215 3.786201 TATTTGCCGGCCTATGCACGT 62.786 52.381 26.77 1.94 40.13 4.49
5046 12217 0.593128 CTATTTGCCGGCCTATGCAC 59.407 55.000 26.77 0.00 40.13 4.57
5070 12241 0.714994 CAAAATGTGCGCGGGATTTG 59.285 50.000 8.83 8.45 0.00 2.32
5074 12245 3.369400 CCCAAAATGTGCGCGGGA 61.369 61.111 8.83 0.00 39.44 5.14
5075 12246 3.625082 GACCCAAAATGTGCGCGGG 62.625 63.158 8.83 12.13 43.02 6.13
5076 12247 2.126502 GACCCAAAATGTGCGCGG 60.127 61.111 8.83 0.00 0.00 6.46
5077 12248 2.501650 CGACCCAAAATGTGCGCG 60.502 61.111 0.00 0.00 0.00 6.86
5078 12249 2.126502 CCGACCCAAAATGTGCGC 60.127 61.111 0.00 0.00 0.00 6.09
5079 12250 2.126502 GCCGACCCAAAATGTGCG 60.127 61.111 0.00 0.00 0.00 5.34
5080 12251 2.261361 GGCCGACCCAAAATGTGC 59.739 61.111 0.00 0.00 0.00 4.57
5221 12408 7.414436 TGTGAACAGTTTCCGAAATTAAGAAG 58.586 34.615 0.00 0.00 0.00 2.85
5222 12409 7.323049 TGTGAACAGTTTCCGAAATTAAGAA 57.677 32.000 0.00 0.00 0.00 2.52
5223 12410 6.928979 TGTGAACAGTTTCCGAAATTAAGA 57.071 33.333 0.00 0.00 0.00 2.10
5224 12411 7.979115 TTTGTGAACAGTTTCCGAAATTAAG 57.021 32.000 0.00 0.00 0.00 1.85
5225 12412 8.934507 AATTTGTGAACAGTTTCCGAAATTAA 57.065 26.923 0.00 0.00 33.68 1.40
5227 12414 7.841915 AAATTTGTGAACAGTTTCCGAAATT 57.158 28.000 0.00 0.00 35.26 1.82
5229 12416 8.934507 ATTAAATTTGTGAACAGTTTCCGAAA 57.065 26.923 0.00 0.00 0.00 3.46
5240 12427 9.849166 TCCCGAAAAGATATTAAATTTGTGAAC 57.151 29.630 0.00 0.00 0.00 3.18
5242 12429 9.849166 GTTCCCGAAAAGATATTAAATTTGTGA 57.151 29.630 0.00 0.00 0.00 3.58
5243 12430 9.855021 AGTTCCCGAAAAGATATTAAATTTGTG 57.145 29.630 0.00 0.00 0.00 3.33
5277 12464 8.514594 TCCTGAACATCTTACAAATTCATGAAC 58.485 33.333 11.07 0.00 0.00 3.18
5279 12466 7.884877 AGTCCTGAACATCTTACAAATTCATGA 59.115 33.333 0.00 0.00 0.00 3.07
5293 12480 8.498054 TCATGATTTAAGAAGTCCTGAACATC 57.502 34.615 0.00 0.00 0.00 3.06
5296 12483 9.780413 GAATTCATGATTTAAGAAGTCCTGAAC 57.220 33.333 0.00 0.00 32.18 3.18
5297 12484 9.519191 TGAATTCATGATTTAAGAAGTCCTGAA 57.481 29.630 3.38 5.40 36.01 3.02
5327 12514 9.959749 ACATATTGTTAAGTTTCGTGAACATTT 57.040 25.926 7.07 0.00 40.84 2.32
5328 12515 9.959749 AACATATTGTTAAGTTTCGTGAACATT 57.040 25.926 7.07 0.00 39.09 2.71
5396 12583 9.079833 CGAATCAGCAAACATTTTCTAATCAAT 57.920 29.630 0.00 0.00 0.00 2.57
5397 12584 8.296000 TCGAATCAGCAAACATTTTCTAATCAA 58.704 29.630 0.00 0.00 0.00 2.57
5398 12585 7.815641 TCGAATCAGCAAACATTTTCTAATCA 58.184 30.769 0.00 0.00 0.00 2.57
5399 12586 8.673626 TTCGAATCAGCAAACATTTTCTAATC 57.326 30.769 0.00 0.00 0.00 1.75
5400 12587 9.474920 TTTTCGAATCAGCAAACATTTTCTAAT 57.525 25.926 0.00 0.00 0.00 1.73
5401 12588 8.864069 TTTTCGAATCAGCAAACATTTTCTAA 57.136 26.923 0.00 0.00 0.00 2.10
5402 12589 8.864069 TTTTTCGAATCAGCAAACATTTTCTA 57.136 26.923 0.00 0.00 0.00 2.10
5403 12590 7.769272 TTTTTCGAATCAGCAAACATTTTCT 57.231 28.000 0.00 0.00 0.00 2.52
5404 12591 7.058693 GCATTTTTCGAATCAGCAAACATTTTC 59.941 33.333 0.00 0.00 0.00 2.29
5405 12592 6.852345 GCATTTTTCGAATCAGCAAACATTTT 59.148 30.769 0.00 0.00 0.00 1.82
5406 12593 6.203338 AGCATTTTTCGAATCAGCAAACATTT 59.797 30.769 0.00 0.00 0.00 2.32
5407 12594 5.697633 AGCATTTTTCGAATCAGCAAACATT 59.302 32.000 0.00 0.00 0.00 2.71
5408 12595 5.232463 AGCATTTTTCGAATCAGCAAACAT 58.768 33.333 0.00 0.00 0.00 2.71
5409 12596 4.619973 AGCATTTTTCGAATCAGCAAACA 58.380 34.783 0.00 0.00 0.00 2.83
5410 12597 4.681025 TGAGCATTTTTCGAATCAGCAAAC 59.319 37.500 0.00 0.00 0.00 2.93
5411 12598 4.869215 TGAGCATTTTTCGAATCAGCAAA 58.131 34.783 0.00 0.00 0.00 3.68
5412 12599 4.502171 TGAGCATTTTTCGAATCAGCAA 57.498 36.364 0.00 0.00 0.00 3.91
5413 12600 4.707030 ATGAGCATTTTTCGAATCAGCA 57.293 36.364 0.00 0.00 0.00 4.41
5414 12601 7.689953 ATTTATGAGCATTTTTCGAATCAGC 57.310 32.000 0.00 1.34 0.00 4.26
5570 12757 8.855279 CGAACAAGAACAAACTTTAAATTCACA 58.145 29.630 2.32 0.00 0.00 3.58
5571 12758 7.839358 GCGAACAAGAACAAACTTTAAATTCAC 59.161 33.333 0.00 0.00 0.00 3.18
5572 12759 7.757624 AGCGAACAAGAACAAACTTTAAATTCA 59.242 29.630 0.00 0.00 0.00 2.57
5576 12763 9.575783 AATTAGCGAACAAGAACAAACTTTAAA 57.424 25.926 0.00 0.00 0.00 1.52
5577 12764 9.228636 GAATTAGCGAACAAGAACAAACTTTAA 57.771 29.630 0.00 0.00 0.00 1.52
5578 12765 8.399425 TGAATTAGCGAACAAGAACAAACTTTA 58.601 29.630 0.00 0.00 0.00 1.85
5583 12770 6.556212 TGTTGAATTAGCGAACAAGAACAAA 58.444 32.000 0.00 0.00 0.00 2.83
5584 12771 6.125327 TGTTGAATTAGCGAACAAGAACAA 57.875 33.333 0.00 0.00 0.00 2.83
5585 12772 5.743026 TGTTGAATTAGCGAACAAGAACA 57.257 34.783 0.00 0.00 0.00 3.18
5586 12773 7.167468 ACATTTGTTGAATTAGCGAACAAGAAC 59.833 33.333 0.00 0.00 39.90 3.01
5587 12774 7.199766 ACATTTGTTGAATTAGCGAACAAGAA 58.800 30.769 0.00 0.00 39.90 2.52
5588 12775 6.734137 ACATTTGTTGAATTAGCGAACAAGA 58.266 32.000 0.00 0.00 39.90 3.02
5590 12777 6.141527 CGAACATTTGTTGAATTAGCGAACAA 59.858 34.615 0.00 0.00 38.56 2.83
5591 12778 5.623264 CGAACATTTGTTGAATTAGCGAACA 59.377 36.000 0.00 0.00 38.56 3.18
5594 12781 5.143660 CACGAACATTTGTTGAATTAGCGA 58.856 37.500 0.00 0.00 38.56 4.93
5595 12782 4.320690 CCACGAACATTTGTTGAATTAGCG 59.679 41.667 0.00 0.00 38.56 4.26
5596 12783 5.457140 TCCACGAACATTTGTTGAATTAGC 58.543 37.500 0.00 0.00 38.56 3.09
5597 12784 7.271223 GTCATCCACGAACATTTGTTGAATTAG 59.729 37.037 0.00 0.00 38.56 1.73
5598 12785 7.040755 AGTCATCCACGAACATTTGTTGAATTA 60.041 33.333 0.00 0.00 38.56 1.40
5601 12788 4.578516 AGTCATCCACGAACATTTGTTGAA 59.421 37.500 0.00 0.00 38.56 2.69
5602 12789 4.133820 AGTCATCCACGAACATTTGTTGA 58.866 39.130 0.00 0.00 38.56 3.18
5603 12790 4.488126 AGTCATCCACGAACATTTGTTG 57.512 40.909 0.00 0.00 38.56 3.33
5605 12792 4.253685 CCTAGTCATCCACGAACATTTGT 58.746 43.478 0.00 0.00 0.00 2.83
5608 12795 2.236146 TGCCTAGTCATCCACGAACATT 59.764 45.455 0.00 0.00 0.00 2.71
5609 12796 1.831106 TGCCTAGTCATCCACGAACAT 59.169 47.619 0.00 0.00 0.00 2.71
5610 12797 1.262417 TGCCTAGTCATCCACGAACA 58.738 50.000 0.00 0.00 0.00 3.18
5611 12798 2.000447 GTTGCCTAGTCATCCACGAAC 59.000 52.381 0.00 0.00 0.00 3.95
5612 12799 1.899814 AGTTGCCTAGTCATCCACGAA 59.100 47.619 0.00 0.00 0.00 3.85
5613 12800 1.557099 AGTTGCCTAGTCATCCACGA 58.443 50.000 0.00 0.00 0.00 4.35
5615 12802 4.072131 TCAAAAGTTGCCTAGTCATCCAC 58.928 43.478 0.00 0.00 0.00 4.02
5616 12803 4.365514 TCAAAAGTTGCCTAGTCATCCA 57.634 40.909 0.00 0.00 0.00 3.41
5618 12805 7.597386 AGAAAATCAAAAGTTGCCTAGTCATC 58.403 34.615 0.00 0.00 0.00 2.92
5619 12806 7.530426 AGAAAATCAAAAGTTGCCTAGTCAT 57.470 32.000 0.00 0.00 0.00 3.06
5620 12807 6.959639 AGAAAATCAAAAGTTGCCTAGTCA 57.040 33.333 0.00 0.00 0.00 3.41
5621 12808 7.203218 ACAAGAAAATCAAAAGTTGCCTAGTC 58.797 34.615 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.