Multiple sequence alignment - TraesCS7B01G297600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G297600 chr7B 100.000 2444 0 0 1 2444 534829609 534827166 0.000000e+00 4514.0
1 TraesCS7B01G297600 chr7D 95.003 1461 50 6 998 2444 506672014 506670563 0.000000e+00 2272.0
2 TraesCS7B01G297600 chr7A 85.867 1500 117 30 998 2444 574095470 574094013 0.000000e+00 1507.0
3 TraesCS7B01G297600 chr7A 86.765 136 17 1 746 880 244575538 244575673 1.510000e-32 150.0
4 TraesCS7B01G297600 chr7A 100.000 30 0 0 953 982 574095530 574095501 3.390000e-04 56.5
5 TraesCS7B01G297600 chr5B 92.453 742 53 3 3 743 648530055 648529316 0.000000e+00 1057.0
6 TraesCS7B01G297600 chr5B 91.402 535 41 4 212 743 700431071 700431603 0.000000e+00 728.0
7 TraesCS7B01G297600 chr5B 88.438 320 24 4 995 1301 335514770 335515089 8.250000e-100 374.0
8 TraesCS7B01G297600 chr5B 88.095 126 13 2 763 886 278248131 278248006 5.440000e-32 148.0
9 TraesCS7B01G297600 chr2B 91.963 535 38 4 212 743 58915749 58916281 0.000000e+00 745.0
10 TraesCS7B01G297600 chr2B 92.381 525 37 3 220 743 613216608 613216086 0.000000e+00 745.0
11 TraesCS7B01G297600 chr2B 91.231 536 40 7 220 754 669675620 669675091 0.000000e+00 723.0
12 TraesCS7B01G297600 chr1B 92.060 529 36 5 212 737 603675288 603675813 0.000000e+00 739.0
13 TraesCS7B01G297600 chr1B 97.727 176 4 0 1 176 41916462 41916637 1.100000e-78 303.0
14 TraesCS7B01G297600 chr1B 96.175 183 6 1 1 182 41916805 41916987 5.110000e-77 298.0
15 TraesCS7B01G297600 chr1B 90.698 215 13 6 1 211 603674434 603674645 1.850000e-71 279.0
16 TraesCS7B01G297600 chr4A 92.593 513 35 3 238 749 722448914 722448404 0.000000e+00 734.0
17 TraesCS7B01G297600 chr6B 91.825 526 39 4 220 744 162250082 162249560 0.000000e+00 730.0
18 TraesCS7B01G297600 chr6B 96.685 181 6 0 1 181 162252930 162252750 3.950000e-78 302.0
19 TraesCS7B01G297600 chr6B 90.698 215 14 5 1 211 162250683 162250471 5.150000e-72 281.0
20 TraesCS7B01G297600 chr6B 90.654 214 16 3 1 211 693426603 693426391 5.150000e-72 281.0
21 TraesCS7B01G297600 chr6B 90.654 214 14 5 1 211 35350615 35350405 1.850000e-71 279.0
22 TraesCS7B01G297600 chr4B 91.061 537 42 5 211 745 25804947 25804415 0.000000e+00 721.0
23 TraesCS7B01G297600 chr5D 89.032 310 28 2 998 1301 294330070 294329761 1.770000e-101 379.0
24 TraesCS7B01G297600 chr5A 87.658 316 27 3 998 1301 387345216 387345531 8.310000e-95 357.0
25 TraesCS7B01G297600 chr3B 96.685 181 6 0 1 181 566612137 566611957 3.950000e-78 302.0
26 TraesCS7B01G297600 chr3B 87.273 110 12 2 772 879 1781713 1781604 9.180000e-25 124.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G297600 chr7B 534827166 534829609 2443 True 4514.000000 4514 100.000000 1 2444 1 chr7B.!!$R1 2443
1 TraesCS7B01G297600 chr7D 506670563 506672014 1451 True 2272.000000 2272 95.003000 998 2444 1 chr7D.!!$R1 1446
2 TraesCS7B01G297600 chr7A 574094013 574095530 1517 True 781.750000 1507 92.933500 953 2444 2 chr7A.!!$R1 1491
3 TraesCS7B01G297600 chr5B 648529316 648530055 739 True 1057.000000 1057 92.453000 3 743 1 chr5B.!!$R2 740
4 TraesCS7B01G297600 chr5B 700431071 700431603 532 False 728.000000 728 91.402000 212 743 1 chr5B.!!$F2 531
5 TraesCS7B01G297600 chr2B 58915749 58916281 532 False 745.000000 745 91.963000 212 743 1 chr2B.!!$F1 531
6 TraesCS7B01G297600 chr2B 613216086 613216608 522 True 745.000000 745 92.381000 220 743 1 chr2B.!!$R1 523
7 TraesCS7B01G297600 chr2B 669675091 669675620 529 True 723.000000 723 91.231000 220 754 1 chr2B.!!$R2 534
8 TraesCS7B01G297600 chr1B 603674434 603675813 1379 False 509.000000 739 91.379000 1 737 2 chr1B.!!$F2 736
9 TraesCS7B01G297600 chr1B 41916462 41916987 525 False 300.500000 303 96.951000 1 182 2 chr1B.!!$F1 181
10 TraesCS7B01G297600 chr4A 722448404 722448914 510 True 734.000000 734 92.593000 238 749 1 chr4A.!!$R1 511
11 TraesCS7B01G297600 chr6B 162249560 162252930 3370 True 437.666667 730 93.069333 1 744 3 chr6B.!!$R3 743
12 TraesCS7B01G297600 chr4B 25804415 25804947 532 True 721.000000 721 91.061000 211 745 1 chr4B.!!$R1 534

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
938 3836 0.033208 TGTTCATCATGGAAGCCCCC 60.033 55.0 0.0 0.0 0.0 5.4 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2204 5154 1.068333 CAACGCCTCCATTCACTTTGG 60.068 52.381 0.0 0.0 35.45 3.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 4.092821 TCAATTTCACGGTCATTTAGCTCG 59.907 41.667 0.00 0.00 0.00 5.03
114 115 9.853555 ACAAATCAGTAAATGCATCGAAAATAA 57.146 25.926 0.00 0.00 0.00 1.40
162 2753 9.211485 GAAAGTTGATGACATGGATTTGAATTT 57.789 29.630 0.00 0.00 0.00 1.82
176 2767 2.945278 TGAATTTTGCATCTGAACGCC 58.055 42.857 0.00 0.00 0.00 5.68
181 2772 3.383620 TTTGCATCTGAACGCCAAAAT 57.616 38.095 0.00 0.00 0.00 1.82
224 3117 8.356533 ACATAAAAATATAGTACCGGTTCACG 57.643 34.615 15.04 0.00 43.80 4.35
411 3305 5.277974 CCAAGTGGTTGTGATAGTTTGACAG 60.278 44.000 0.00 0.00 30.95 3.51
539 3437 3.238597 ACCGGTACTAAAGGTGTTGGTA 58.761 45.455 4.49 0.00 36.81 3.25
570 3468 0.466007 TGACCACAGCATGCAACAGT 60.466 50.000 21.98 11.79 42.53 3.55
638 3536 4.441079 CCACGAACCGGTACTAATGATCTT 60.441 45.833 8.00 0.00 0.00 2.40
639 3537 5.107133 CACGAACCGGTACTAATGATCTTT 58.893 41.667 8.00 0.00 0.00 2.52
640 3538 5.579511 CACGAACCGGTACTAATGATCTTTT 59.420 40.000 8.00 0.00 0.00 2.27
646 3544 4.102681 CGGTACTAATGATCTTTTCCCCCT 59.897 45.833 0.00 0.00 0.00 4.79
652 3550 2.573463 TGATCTTTTCCCCCTTAGCCT 58.427 47.619 0.00 0.00 0.00 4.58
671 3569 2.094675 CTTTGGGACTGGCACTAATGG 58.905 52.381 0.00 0.00 0.00 3.16
676 3574 1.279271 GGACTGGCACTAATGGTCACT 59.721 52.381 4.93 0.00 0.00 3.41
749 3647 2.450609 TTTTCTACCAGTGGACGCTC 57.549 50.000 18.40 0.00 0.00 5.03
751 3649 1.592400 TTCTACCAGTGGACGCTCGG 61.592 60.000 18.40 0.00 0.00 4.63
772 3670 4.498520 CCGACGCTCATGCCGACT 62.499 66.667 11.67 0.00 35.36 4.18
773 3671 2.407616 CGACGCTCATGCCGACTA 59.592 61.111 11.67 0.00 35.36 2.59
774 3672 1.655654 CGACGCTCATGCCGACTAG 60.656 63.158 11.67 0.00 35.36 2.57
775 3673 1.433879 GACGCTCATGCCGACTAGT 59.566 57.895 11.67 0.00 35.36 2.57
776 3674 0.179134 GACGCTCATGCCGACTAGTT 60.179 55.000 11.67 0.00 35.36 2.24
777 3675 0.246635 ACGCTCATGCCGACTAGTTT 59.753 50.000 11.67 0.00 35.36 2.66
778 3676 1.337823 ACGCTCATGCCGACTAGTTTT 60.338 47.619 11.67 0.00 35.36 2.43
779 3677 2.094390 ACGCTCATGCCGACTAGTTTTA 60.094 45.455 11.67 0.00 35.36 1.52
780 3678 2.281762 CGCTCATGCCGACTAGTTTTAC 59.718 50.000 0.00 0.00 35.36 2.01
781 3679 3.259064 GCTCATGCCGACTAGTTTTACA 58.741 45.455 0.00 0.00 0.00 2.41
782 3680 3.871594 GCTCATGCCGACTAGTTTTACAT 59.128 43.478 0.00 0.00 0.00 2.29
783 3681 4.025647 GCTCATGCCGACTAGTTTTACATC 60.026 45.833 0.00 0.00 0.00 3.06
784 3682 5.339008 TCATGCCGACTAGTTTTACATCT 57.661 39.130 0.00 0.00 0.00 2.90
785 3683 5.348986 TCATGCCGACTAGTTTTACATCTC 58.651 41.667 0.00 0.00 0.00 2.75
786 3684 4.119442 TGCCGACTAGTTTTACATCTCC 57.881 45.455 0.00 0.00 0.00 3.71
787 3685 3.767673 TGCCGACTAGTTTTACATCTCCT 59.232 43.478 0.00 0.00 0.00 3.69
788 3686 4.222145 TGCCGACTAGTTTTACATCTCCTT 59.778 41.667 0.00 0.00 0.00 3.36
789 3687 5.176592 GCCGACTAGTTTTACATCTCCTTT 58.823 41.667 0.00 0.00 0.00 3.11
790 3688 5.642491 GCCGACTAGTTTTACATCTCCTTTT 59.358 40.000 0.00 0.00 0.00 2.27
791 3689 6.402226 GCCGACTAGTTTTACATCTCCTTTTG 60.402 42.308 0.00 0.00 0.00 2.44
792 3690 6.872020 CCGACTAGTTTTACATCTCCTTTTGA 59.128 38.462 0.00 0.00 0.00 2.69
793 3691 7.386848 CCGACTAGTTTTACATCTCCTTTTGAA 59.613 37.037 0.00 0.00 0.00 2.69
794 3692 8.770828 CGACTAGTTTTACATCTCCTTTTGAAA 58.229 33.333 0.00 0.00 0.00 2.69
805 3703 9.312904 ACATCTCCTTTTGAAATATCTTTTGGA 57.687 29.630 0.00 0.00 0.00 3.53
806 3704 9.798994 CATCTCCTTTTGAAATATCTTTTGGAG 57.201 33.333 0.00 0.00 38.80 3.86
807 3705 8.940397 TCTCCTTTTGAAATATCTTTTGGAGT 57.060 30.769 0.00 0.00 38.63 3.85
808 3706 9.367160 TCTCCTTTTGAAATATCTTTTGGAGTT 57.633 29.630 0.00 0.00 38.63 3.01
825 3723 9.575868 TTTTGGAGTTATACTTTTACATCACCA 57.424 29.630 0.00 0.00 0.00 4.17
826 3724 9.575868 TTTGGAGTTATACTTTTACATCACCAA 57.424 29.630 0.00 0.00 0.00 3.67
827 3725 9.747898 TTGGAGTTATACTTTTACATCACCAAT 57.252 29.630 0.00 0.00 0.00 3.16
828 3726 9.747898 TGGAGTTATACTTTTACATCACCAATT 57.252 29.630 0.00 0.00 0.00 2.32
840 3738 8.806429 TTACATCACCAATTTACATCATCTGT 57.194 30.769 0.00 0.00 42.13 3.41
841 3739 7.707624 ACATCACCAATTTACATCATCTGTT 57.292 32.000 0.00 0.00 39.39 3.16
842 3740 7.541162 ACATCACCAATTTACATCATCTGTTG 58.459 34.615 0.00 0.00 39.39 3.33
843 3741 6.513806 TCACCAATTTACATCATCTGTTGG 57.486 37.500 0.00 0.00 39.39 3.77
844 3742 6.244654 TCACCAATTTACATCATCTGTTGGA 58.755 36.000 8.10 0.00 39.39 3.53
845 3743 6.375174 TCACCAATTTACATCATCTGTTGGAG 59.625 38.462 8.10 0.91 39.39 3.86
846 3744 6.151648 CACCAATTTACATCATCTGTTGGAGT 59.848 38.462 8.10 0.00 39.39 3.85
847 3745 6.721208 ACCAATTTACATCATCTGTTGGAGTT 59.279 34.615 8.10 0.00 39.39 3.01
848 3746 7.031372 CCAATTTACATCATCTGTTGGAGTTG 58.969 38.462 0.00 0.00 39.39 3.16
849 3747 5.627499 TTTACATCATCTGTTGGAGTTGC 57.373 39.130 0.00 0.00 39.39 4.17
850 3748 3.430042 ACATCATCTGTTGGAGTTGCT 57.570 42.857 0.00 0.00 32.90 3.91
851 3749 3.759581 ACATCATCTGTTGGAGTTGCTT 58.240 40.909 0.00 0.00 32.90 3.91
852 3750 4.147321 ACATCATCTGTTGGAGTTGCTTT 58.853 39.130 0.00 0.00 32.90 3.51
853 3751 4.586001 ACATCATCTGTTGGAGTTGCTTTT 59.414 37.500 0.00 0.00 32.90 2.27
854 3752 5.069516 ACATCATCTGTTGGAGTTGCTTTTT 59.930 36.000 0.00 0.00 32.90 1.94
883 3781 8.715191 AAGATGTAAAATGCACTTTTTGAACA 57.285 26.923 0.00 0.00 38.09 3.18
884 3782 8.891671 AGATGTAAAATGCACTTTTTGAACAT 57.108 26.923 6.49 6.49 36.74 2.71
885 3783 8.767085 AGATGTAAAATGCACTTTTTGAACATG 58.233 29.630 10.53 0.00 35.31 3.21
886 3784 7.244166 TGTAAAATGCACTTTTTGAACATGG 57.756 32.000 0.00 0.00 38.09 3.66
887 3785 6.820656 TGTAAAATGCACTTTTTGAACATGGT 59.179 30.769 0.00 0.00 38.09 3.55
888 3786 5.738118 AAATGCACTTTTTGAACATGGTG 57.262 34.783 0.00 0.00 0.00 4.17
889 3787 4.669206 ATGCACTTTTTGAACATGGTGA 57.331 36.364 0.00 0.00 0.00 4.02
890 3788 4.669206 TGCACTTTTTGAACATGGTGAT 57.331 36.364 0.00 0.00 0.00 3.06
891 3789 4.619973 TGCACTTTTTGAACATGGTGATC 58.380 39.130 0.00 0.00 0.00 2.92
892 3790 4.341806 TGCACTTTTTGAACATGGTGATCT 59.658 37.500 0.00 0.00 0.00 2.75
893 3791 5.163426 TGCACTTTTTGAACATGGTGATCTT 60.163 36.000 0.00 0.00 0.00 2.40
894 3792 5.176223 GCACTTTTTGAACATGGTGATCTTG 59.824 40.000 0.00 0.00 0.00 3.02
895 3793 5.693104 CACTTTTTGAACATGGTGATCTTGG 59.307 40.000 0.00 0.00 0.00 3.61
896 3794 5.363580 ACTTTTTGAACATGGTGATCTTGGT 59.636 36.000 0.00 0.00 0.00 3.67
897 3795 4.852134 TTTGAACATGGTGATCTTGGTG 57.148 40.909 0.00 0.00 0.00 4.17
898 3796 3.786368 TGAACATGGTGATCTTGGTGA 57.214 42.857 0.00 0.00 0.00 4.02
899 3797 4.097551 TGAACATGGTGATCTTGGTGAA 57.902 40.909 0.00 0.00 0.00 3.18
900 3798 4.468713 TGAACATGGTGATCTTGGTGAAA 58.531 39.130 0.00 0.00 0.00 2.69
901 3799 5.078949 TGAACATGGTGATCTTGGTGAAAT 58.921 37.500 0.00 0.00 0.00 2.17
902 3800 6.244654 TGAACATGGTGATCTTGGTGAAATA 58.755 36.000 0.00 0.00 0.00 1.40
903 3801 6.375174 TGAACATGGTGATCTTGGTGAAATAG 59.625 38.462 0.00 0.00 0.00 1.73
904 3802 5.819991 ACATGGTGATCTTGGTGAAATAGT 58.180 37.500 0.00 0.00 0.00 2.12
905 3803 5.649395 ACATGGTGATCTTGGTGAAATAGTG 59.351 40.000 0.00 0.00 0.00 2.74
906 3804 5.241403 TGGTGATCTTGGTGAAATAGTGT 57.759 39.130 0.00 0.00 0.00 3.55
907 3805 5.003160 TGGTGATCTTGGTGAAATAGTGTG 58.997 41.667 0.00 0.00 0.00 3.82
908 3806 5.221823 TGGTGATCTTGGTGAAATAGTGTGA 60.222 40.000 0.00 0.00 0.00 3.58
909 3807 5.122396 GGTGATCTTGGTGAAATAGTGTGAC 59.878 44.000 0.00 0.00 0.00 3.67
910 3808 5.934625 GTGATCTTGGTGAAATAGTGTGACT 59.065 40.000 0.00 0.00 0.00 3.41
911 3809 6.091441 GTGATCTTGGTGAAATAGTGTGACTC 59.909 42.308 0.00 0.00 0.00 3.36
912 3810 4.556233 TCTTGGTGAAATAGTGTGACTCG 58.444 43.478 0.00 0.00 0.00 4.18
913 3811 3.313012 TGGTGAAATAGTGTGACTCGG 57.687 47.619 0.00 0.00 0.00 4.63
914 3812 2.631062 TGGTGAAATAGTGTGACTCGGT 59.369 45.455 0.00 0.00 0.00 4.69
915 3813 3.070446 TGGTGAAATAGTGTGACTCGGTT 59.930 43.478 0.00 0.00 0.00 4.44
916 3814 4.281435 TGGTGAAATAGTGTGACTCGGTTA 59.719 41.667 0.00 0.00 0.00 2.85
917 3815 5.221481 TGGTGAAATAGTGTGACTCGGTTAA 60.221 40.000 0.00 0.00 0.00 2.01
918 3816 5.119743 GGTGAAATAGTGTGACTCGGTTAAC 59.880 44.000 0.00 0.00 0.00 2.01
919 3817 5.924825 GTGAAATAGTGTGACTCGGTTAACT 59.075 40.000 5.42 0.00 0.00 2.24
920 3818 5.924254 TGAAATAGTGTGACTCGGTTAACTG 59.076 40.000 8.22 8.22 0.00 3.16
921 3819 5.464030 AATAGTGTGACTCGGTTAACTGT 57.536 39.130 14.06 6.72 0.00 3.55
922 3820 3.814005 AGTGTGACTCGGTTAACTGTT 57.186 42.857 14.06 0.00 0.00 3.16
923 3821 3.714391 AGTGTGACTCGGTTAACTGTTC 58.286 45.455 14.06 11.85 0.00 3.18
924 3822 3.131577 AGTGTGACTCGGTTAACTGTTCA 59.868 43.478 14.06 14.02 0.00 3.18
925 3823 4.056050 GTGTGACTCGGTTAACTGTTCAT 58.944 43.478 18.40 4.28 0.00 2.57
926 3824 4.150098 GTGTGACTCGGTTAACTGTTCATC 59.850 45.833 18.40 14.08 0.00 2.92
927 3825 4.202172 TGTGACTCGGTTAACTGTTCATCA 60.202 41.667 18.40 15.61 0.00 3.07
928 3826 4.929808 GTGACTCGGTTAACTGTTCATCAT 59.070 41.667 18.40 0.38 0.00 2.45
929 3827 4.929211 TGACTCGGTTAACTGTTCATCATG 59.071 41.667 14.06 0.00 0.00 3.07
930 3828 4.253685 ACTCGGTTAACTGTTCATCATGG 58.746 43.478 14.06 0.00 0.00 3.66
931 3829 4.020573 ACTCGGTTAACTGTTCATCATGGA 60.021 41.667 14.06 0.00 0.00 3.41
932 3830 4.900684 TCGGTTAACTGTTCATCATGGAA 58.099 39.130 14.06 0.00 0.00 3.53
933 3831 4.935205 TCGGTTAACTGTTCATCATGGAAG 59.065 41.667 14.06 0.00 0.00 3.46
934 3832 4.437390 CGGTTAACTGTTCATCATGGAAGC 60.437 45.833 6.25 0.00 0.00 3.86
935 3833 4.142381 GGTTAACTGTTCATCATGGAAGCC 60.142 45.833 5.42 0.00 0.00 4.35
936 3834 2.134789 ACTGTTCATCATGGAAGCCC 57.865 50.000 0.00 0.00 0.00 5.19
937 3835 1.341383 ACTGTTCATCATGGAAGCCCC 60.341 52.381 0.00 0.00 0.00 5.80
938 3836 0.033208 TGTTCATCATGGAAGCCCCC 60.033 55.000 0.00 0.00 0.00 5.40
939 3837 0.033208 GTTCATCATGGAAGCCCCCA 60.033 55.000 0.00 0.00 41.05 4.96
940 3838 0.033208 TTCATCATGGAAGCCCCCAC 60.033 55.000 0.00 0.00 39.34 4.61
941 3839 1.456331 CATCATGGAAGCCCCCACC 60.456 63.158 0.00 0.00 39.34 4.61
942 3840 2.704424 ATCATGGAAGCCCCCACCC 61.704 63.158 0.00 0.00 39.34 4.61
943 3841 4.820744 CATGGAAGCCCCCACCCG 62.821 72.222 0.00 0.00 39.34 5.28
982 3880 0.260230 CTAGCCCAGAGACCTCCAGA 59.740 60.000 0.00 0.00 0.00 3.86
984 3882 2.363172 GCCCAGAGACCTCCAGACC 61.363 68.421 0.00 0.00 0.00 3.85
985 3883 1.079256 CCCAGAGACCTCCAGACCA 59.921 63.158 0.00 0.00 0.00 4.02
986 3884 0.975040 CCCAGAGACCTCCAGACCAG 60.975 65.000 0.00 0.00 0.00 4.00
987 3885 0.252012 CCAGAGACCTCCAGACCAGT 60.252 60.000 0.00 0.00 0.00 4.00
990 3888 1.181786 GAGACCTCCAGACCAGTCAG 58.818 60.000 0.00 0.00 0.00 3.51
991 3889 0.902516 AGACCTCCAGACCAGTCAGC 60.903 60.000 0.00 0.00 0.00 4.26
992 3890 2.219325 GACCTCCAGACCAGTCAGCG 62.219 65.000 0.00 0.00 0.00 5.18
993 3891 1.979155 CCTCCAGACCAGTCAGCGA 60.979 63.158 0.00 0.00 0.00 4.93
994 3892 1.536073 CCTCCAGACCAGTCAGCGAA 61.536 60.000 0.00 0.00 0.00 4.70
995 3893 0.389166 CTCCAGACCAGTCAGCGAAC 60.389 60.000 0.00 0.00 0.00 3.95
996 3894 1.374758 CCAGACCAGTCAGCGAACC 60.375 63.158 0.00 0.00 0.00 3.62
1014 3927 1.702957 ACCAAAATGACCGAGGAAGGA 59.297 47.619 0.00 0.00 34.73 3.36
1102 4015 3.770040 CACCGGAGTCCATCGCCA 61.770 66.667 9.46 0.00 35.71 5.69
1124 4037 1.871772 CTTTCTCCCTTGCAGCGTG 59.128 57.895 0.00 0.00 0.00 5.34
1178 4091 2.747822 CCGATGACGAGGACGACGT 61.748 63.158 0.00 0.00 46.58 4.34
1188 4104 2.562912 GACGACGTTGACCCGCTA 59.437 61.111 10.51 0.00 0.00 4.26
1347 4281 2.370445 CCAAGAGCTGGGACGGGAT 61.370 63.158 0.00 0.00 42.17 3.85
1348 4282 1.153289 CAAGAGCTGGGACGGGATG 60.153 63.158 0.00 0.00 33.56 3.51
1353 4287 3.164269 CTGGGACGGGATGAGGGG 61.164 72.222 0.00 0.00 0.00 4.79
1356 4290 2.687566 GGACGGGATGAGGGGTGT 60.688 66.667 0.00 0.00 0.00 4.16
1416 4350 3.588842 AGGGTGATGAGATTGTGGAGAAA 59.411 43.478 0.00 0.00 0.00 2.52
1603 4537 3.060473 GCATCAACGGTATTCGACTTAGC 60.060 47.826 0.00 0.00 42.43 3.09
1801 4739 8.966868 TGTCTGACATATAATGTGTCTTAGACA 58.033 33.333 20.36 20.36 46.29 3.41
1862 4800 3.021695 CACTGGATTTGACATGGCATCT 58.978 45.455 0.00 0.00 0.00 2.90
1876 4814 8.623903 TGACATGGCATCTAATCATTTTAGAAC 58.376 33.333 0.00 0.00 34.99 3.01
1931 4874 4.756084 AGATTTCTTGCAGAAACCTTCG 57.244 40.909 11.78 0.00 45.83 3.79
1934 4877 2.613026 TCTTGCAGAAACCTTCGTCA 57.387 45.000 0.00 0.00 34.02 4.35
2004 4947 8.660373 AGAAAAATAAATAGAACAGAGCAGACG 58.340 33.333 0.00 0.00 0.00 4.18
2204 5154 2.609459 ACGTAGCAGCAGATTATTGTGC 59.391 45.455 0.00 0.00 42.28 4.57
2229 5179 3.157087 AGTGAATGGAGGCGTTGAAAAT 58.843 40.909 0.00 0.00 0.00 1.82
2245 5195 5.107109 TGAAAATGATGTTTGTGTCGAGG 57.893 39.130 0.00 0.00 0.00 4.63
2402 5367 7.609146 TCTGCAACAAGATGAACTCTATGATTT 59.391 33.333 0.00 0.00 32.41 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 6.089283 TCGATGCATTTACTGATTTGTTTTGC 59.911 34.615 0.00 0.00 0.00 3.68
114 115 8.477419 TTTCAACCCTTTCTGACATAATTTCT 57.523 30.769 0.00 0.00 0.00 2.52
115 116 8.360390 ACTTTCAACCCTTTCTGACATAATTTC 58.640 33.333 0.00 0.00 0.00 2.17
162 2753 2.035704 ACATTTTGGCGTTCAGATGCAA 59.964 40.909 0.00 0.00 39.63 4.08
224 3117 1.322637 GTAGTAGTAGCGCGTTTTGGC 59.677 52.381 8.43 0.00 0.00 4.52
504 3401 0.467290 ACCGGTTCATGCCACAAACT 60.467 50.000 0.00 0.00 0.00 2.66
570 3468 2.489329 CCACGAACCGGTACTAAAGAGA 59.511 50.000 8.00 0.00 0.00 3.10
638 3536 0.411848 CCCAAAGGCTAAGGGGGAAA 59.588 55.000 14.75 0.00 41.49 3.13
639 3537 0.478789 TCCCAAAGGCTAAGGGGGAA 60.479 55.000 20.45 2.82 44.59 3.97
640 3538 1.164789 TCCCAAAGGCTAAGGGGGA 59.835 57.895 20.45 15.44 45.34 4.81
652 3550 1.427368 ACCATTAGTGCCAGTCCCAAA 59.573 47.619 0.00 0.00 0.00 3.28
676 3574 4.978083 TTGTAACAAAACCGGCACTAAA 57.022 36.364 0.00 0.00 0.00 1.85
755 3653 2.990674 CTAGTCGGCATGAGCGTCGG 62.991 65.000 0.00 0.00 43.41 4.79
756 3654 1.655654 CTAGTCGGCATGAGCGTCG 60.656 63.158 0.00 0.00 43.41 5.12
757 3655 0.179134 AACTAGTCGGCATGAGCGTC 60.179 55.000 0.00 0.00 43.41 5.19
758 3656 0.246635 AAACTAGTCGGCATGAGCGT 59.753 50.000 0.00 0.00 43.41 5.07
759 3657 1.359848 AAAACTAGTCGGCATGAGCG 58.640 50.000 0.00 0.00 43.41 5.03
760 3658 3.259064 TGTAAAACTAGTCGGCATGAGC 58.741 45.455 0.00 0.00 41.10 4.26
761 3659 5.352284 AGATGTAAAACTAGTCGGCATGAG 58.648 41.667 0.00 0.00 0.00 2.90
762 3660 5.339008 AGATGTAAAACTAGTCGGCATGA 57.661 39.130 0.00 0.00 0.00 3.07
763 3661 4.508124 GGAGATGTAAAACTAGTCGGCATG 59.492 45.833 0.00 0.00 0.00 4.06
764 3662 4.406003 AGGAGATGTAAAACTAGTCGGCAT 59.594 41.667 0.00 0.00 0.00 4.40
765 3663 3.767673 AGGAGATGTAAAACTAGTCGGCA 59.232 43.478 0.00 0.00 0.00 5.69
766 3664 4.388378 AGGAGATGTAAAACTAGTCGGC 57.612 45.455 0.00 0.00 0.00 5.54
767 3665 6.872020 TCAAAAGGAGATGTAAAACTAGTCGG 59.128 38.462 0.00 0.00 0.00 4.79
768 3666 7.884816 TCAAAAGGAGATGTAAAACTAGTCG 57.115 36.000 0.00 0.00 0.00 4.18
779 3677 9.312904 TCCAAAAGATATTTCAAAAGGAGATGT 57.687 29.630 0.00 0.00 0.00 3.06
780 3678 9.798994 CTCCAAAAGATATTTCAAAAGGAGATG 57.201 33.333 0.00 0.00 40.97 2.90
781 3679 9.539194 ACTCCAAAAGATATTTCAAAAGGAGAT 57.461 29.630 17.48 6.46 40.97 2.75
782 3680 8.940397 ACTCCAAAAGATATTTCAAAAGGAGA 57.060 30.769 17.48 0.00 40.97 3.71
799 3697 9.575868 TGGTGATGTAAAAGTATAACTCCAAAA 57.424 29.630 0.00 0.00 0.00 2.44
800 3698 9.575868 TTGGTGATGTAAAAGTATAACTCCAAA 57.424 29.630 0.00 0.00 0.00 3.28
801 3699 9.747898 ATTGGTGATGTAAAAGTATAACTCCAA 57.252 29.630 0.00 0.00 34.15 3.53
802 3700 9.747898 AATTGGTGATGTAAAAGTATAACTCCA 57.252 29.630 0.00 0.00 0.00 3.86
814 3712 9.241919 ACAGATGATGTAAATTGGTGATGTAAA 57.758 29.630 0.00 0.00 41.60 2.01
815 3713 8.806429 ACAGATGATGTAAATTGGTGATGTAA 57.194 30.769 0.00 0.00 41.60 2.41
816 3714 8.676401 CAACAGATGATGTAAATTGGTGATGTA 58.324 33.333 0.00 0.00 43.00 2.29
817 3715 7.363181 CCAACAGATGATGTAAATTGGTGATGT 60.363 37.037 0.00 0.00 43.00 3.06
818 3716 6.976349 CCAACAGATGATGTAAATTGGTGATG 59.024 38.462 0.00 0.00 43.00 3.07
819 3717 6.891361 TCCAACAGATGATGTAAATTGGTGAT 59.109 34.615 0.00 0.00 43.00 3.06
820 3718 6.244654 TCCAACAGATGATGTAAATTGGTGA 58.755 36.000 0.00 0.00 43.00 4.02
821 3719 6.151648 ACTCCAACAGATGATGTAAATTGGTG 59.848 38.462 0.00 0.00 43.00 4.17
822 3720 6.248433 ACTCCAACAGATGATGTAAATTGGT 58.752 36.000 0.00 0.00 43.00 3.67
823 3721 6.764308 ACTCCAACAGATGATGTAAATTGG 57.236 37.500 0.00 0.00 43.00 3.16
824 3722 6.529125 GCAACTCCAACAGATGATGTAAATTG 59.471 38.462 0.00 0.00 43.00 2.32
825 3723 6.435277 AGCAACTCCAACAGATGATGTAAATT 59.565 34.615 0.00 0.00 43.00 1.82
826 3724 5.948162 AGCAACTCCAACAGATGATGTAAAT 59.052 36.000 0.00 0.00 43.00 1.40
827 3725 5.316167 AGCAACTCCAACAGATGATGTAAA 58.684 37.500 0.00 0.00 43.00 2.01
828 3726 4.910195 AGCAACTCCAACAGATGATGTAA 58.090 39.130 0.00 0.00 43.00 2.41
829 3727 4.558226 AGCAACTCCAACAGATGATGTA 57.442 40.909 0.00 0.00 43.00 2.29
830 3728 3.430042 AGCAACTCCAACAGATGATGT 57.570 42.857 0.00 0.00 46.97 3.06
831 3729 4.778534 AAAGCAACTCCAACAGATGATG 57.221 40.909 0.00 0.00 0.00 3.07
832 3730 5.796424 AAAAAGCAACTCCAACAGATGAT 57.204 34.783 0.00 0.00 0.00 2.45
857 3755 9.809096 TGTTCAAAAAGTGCATTTTACATCTTA 57.191 25.926 7.69 0.00 40.27 2.10
858 3756 8.715191 TGTTCAAAAAGTGCATTTTACATCTT 57.285 26.923 7.69 0.00 40.27 2.40
859 3757 8.767085 CATGTTCAAAAAGTGCATTTTACATCT 58.233 29.630 14.42 0.00 40.27 2.90
860 3758 8.011106 CCATGTTCAAAAAGTGCATTTTACATC 58.989 33.333 14.42 4.69 40.27 3.06
861 3759 7.498570 ACCATGTTCAAAAAGTGCATTTTACAT 59.501 29.630 7.69 10.59 40.27 2.29
862 3760 6.820656 ACCATGTTCAAAAAGTGCATTTTACA 59.179 30.769 7.69 8.78 40.27 2.41
863 3761 7.010923 TCACCATGTTCAAAAAGTGCATTTTAC 59.989 33.333 7.69 3.26 40.27 2.01
864 3762 7.044181 TCACCATGTTCAAAAAGTGCATTTTA 58.956 30.769 7.69 0.00 40.27 1.52
865 3763 5.879223 TCACCATGTTCAAAAAGTGCATTTT 59.121 32.000 0.65 0.65 43.04 1.82
866 3764 5.426504 TCACCATGTTCAAAAAGTGCATTT 58.573 33.333 0.00 0.00 0.00 2.32
867 3765 5.021033 TCACCATGTTCAAAAAGTGCATT 57.979 34.783 0.00 0.00 0.00 3.56
868 3766 4.669206 TCACCATGTTCAAAAAGTGCAT 57.331 36.364 0.00 0.00 0.00 3.96
869 3767 4.341806 AGATCACCATGTTCAAAAAGTGCA 59.658 37.500 0.00 0.00 0.00 4.57
870 3768 4.874970 AGATCACCATGTTCAAAAAGTGC 58.125 39.130 0.00 0.00 0.00 4.40
871 3769 5.693104 CCAAGATCACCATGTTCAAAAAGTG 59.307 40.000 0.00 0.00 0.00 3.16
872 3770 5.363580 ACCAAGATCACCATGTTCAAAAAGT 59.636 36.000 0.00 0.00 0.00 2.66
873 3771 5.693104 CACCAAGATCACCATGTTCAAAAAG 59.307 40.000 0.00 0.00 0.00 2.27
874 3772 5.362143 TCACCAAGATCACCATGTTCAAAAA 59.638 36.000 0.00 0.00 0.00 1.94
875 3773 4.892345 TCACCAAGATCACCATGTTCAAAA 59.108 37.500 0.00 0.00 0.00 2.44
876 3774 4.468713 TCACCAAGATCACCATGTTCAAA 58.531 39.130 0.00 0.00 0.00 2.69
877 3775 4.097551 TCACCAAGATCACCATGTTCAA 57.902 40.909 0.00 0.00 0.00 2.69
878 3776 3.786368 TCACCAAGATCACCATGTTCA 57.214 42.857 0.00 0.00 0.00 3.18
879 3777 5.649782 ATTTCACCAAGATCACCATGTTC 57.350 39.130 0.00 0.00 0.00 3.18
880 3778 6.151648 CACTATTTCACCAAGATCACCATGTT 59.848 38.462 0.00 0.00 0.00 2.71
881 3779 5.649395 CACTATTTCACCAAGATCACCATGT 59.351 40.000 0.00 0.00 0.00 3.21
882 3780 5.649395 ACACTATTTCACCAAGATCACCATG 59.351 40.000 0.00 0.00 0.00 3.66
883 3781 5.649395 CACACTATTTCACCAAGATCACCAT 59.351 40.000 0.00 0.00 0.00 3.55
884 3782 5.003160 CACACTATTTCACCAAGATCACCA 58.997 41.667 0.00 0.00 0.00 4.17
885 3783 5.122396 GTCACACTATTTCACCAAGATCACC 59.878 44.000 0.00 0.00 0.00 4.02
886 3784 5.934625 AGTCACACTATTTCACCAAGATCAC 59.065 40.000 0.00 0.00 0.00 3.06
887 3785 6.114187 AGTCACACTATTTCACCAAGATCA 57.886 37.500 0.00 0.00 0.00 2.92
888 3786 5.289675 CGAGTCACACTATTTCACCAAGATC 59.710 44.000 0.00 0.00 0.00 2.75
889 3787 5.171476 CGAGTCACACTATTTCACCAAGAT 58.829 41.667 0.00 0.00 0.00 2.40
890 3788 4.556233 CGAGTCACACTATTTCACCAAGA 58.444 43.478 0.00 0.00 0.00 3.02
891 3789 3.679980 CCGAGTCACACTATTTCACCAAG 59.320 47.826 0.00 0.00 0.00 3.61
892 3790 3.070446 ACCGAGTCACACTATTTCACCAA 59.930 43.478 0.00 0.00 0.00 3.67
893 3791 2.631062 ACCGAGTCACACTATTTCACCA 59.369 45.455 0.00 0.00 0.00 4.17
894 3792 3.314541 ACCGAGTCACACTATTTCACC 57.685 47.619 0.00 0.00 0.00 4.02
895 3793 5.924825 AGTTAACCGAGTCACACTATTTCAC 59.075 40.000 0.88 0.00 0.00 3.18
896 3794 5.924254 CAGTTAACCGAGTCACACTATTTCA 59.076 40.000 0.88 0.00 0.00 2.69
897 3795 5.924825 ACAGTTAACCGAGTCACACTATTTC 59.075 40.000 0.88 0.00 0.00 2.17
898 3796 5.850614 ACAGTTAACCGAGTCACACTATTT 58.149 37.500 0.88 0.00 0.00 1.40
899 3797 5.464030 ACAGTTAACCGAGTCACACTATT 57.536 39.130 0.88 0.00 0.00 1.73
900 3798 5.010314 TGAACAGTTAACCGAGTCACACTAT 59.990 40.000 0.88 0.00 0.00 2.12
901 3799 4.338964 TGAACAGTTAACCGAGTCACACTA 59.661 41.667 0.88 0.00 0.00 2.74
902 3800 3.131577 TGAACAGTTAACCGAGTCACACT 59.868 43.478 0.88 0.00 0.00 3.55
903 3801 3.450578 TGAACAGTTAACCGAGTCACAC 58.549 45.455 0.88 0.00 0.00 3.82
904 3802 3.804786 TGAACAGTTAACCGAGTCACA 57.195 42.857 0.88 1.62 0.00 3.58
905 3803 4.304110 TGATGAACAGTTAACCGAGTCAC 58.696 43.478 0.88 0.00 0.00 3.67
906 3804 4.594123 TGATGAACAGTTAACCGAGTCA 57.406 40.909 0.88 2.56 0.00 3.41
907 3805 4.330074 CCATGATGAACAGTTAACCGAGTC 59.670 45.833 0.88 0.00 0.00 3.36
908 3806 4.020573 TCCATGATGAACAGTTAACCGAGT 60.021 41.667 0.88 0.00 0.00 4.18
909 3807 4.503910 TCCATGATGAACAGTTAACCGAG 58.496 43.478 0.88 0.00 0.00 4.63
910 3808 4.545208 TCCATGATGAACAGTTAACCGA 57.455 40.909 0.88 0.00 0.00 4.69
911 3809 4.437390 GCTTCCATGATGAACAGTTAACCG 60.437 45.833 0.88 0.00 0.00 4.44
912 3810 4.142381 GGCTTCCATGATGAACAGTTAACC 60.142 45.833 0.88 0.00 0.00 2.85
913 3811 4.142381 GGGCTTCCATGATGAACAGTTAAC 60.142 45.833 0.00 0.00 0.00 2.01
914 3812 4.016444 GGGCTTCCATGATGAACAGTTAA 58.984 43.478 0.00 0.00 0.00 2.01
915 3813 3.620488 GGGCTTCCATGATGAACAGTTA 58.380 45.455 0.00 0.00 0.00 2.24
916 3814 2.450476 GGGCTTCCATGATGAACAGTT 58.550 47.619 0.00 0.00 0.00 3.16
917 3815 1.341383 GGGGCTTCCATGATGAACAGT 60.341 52.381 0.00 0.00 35.00 3.55
918 3816 1.396653 GGGGCTTCCATGATGAACAG 58.603 55.000 0.00 0.00 35.00 3.16
919 3817 0.033208 GGGGGCTTCCATGATGAACA 60.033 55.000 0.00 0.00 37.22 3.18
920 3818 0.033208 TGGGGGCTTCCATGATGAAC 60.033 55.000 0.00 0.00 37.22 3.18
921 3819 0.033208 GTGGGGGCTTCCATGATGAA 60.033 55.000 0.00 0.00 39.26 2.57
922 3820 1.614711 GTGGGGGCTTCCATGATGA 59.385 57.895 0.00 0.00 39.26 2.92
923 3821 1.456331 GGTGGGGGCTTCCATGATG 60.456 63.158 0.00 0.00 39.26 3.07
924 3822 2.704424 GGGTGGGGGCTTCCATGAT 61.704 63.158 0.00 0.00 39.26 2.45
925 3823 3.346734 GGGTGGGGGCTTCCATGA 61.347 66.667 0.00 0.00 39.26 3.07
926 3824 4.820744 CGGGTGGGGGCTTCCATG 62.821 72.222 3.69 0.00 39.26 3.66
937 3835 4.436998 GACTCTGGACGCGGGTGG 62.437 72.222 10.96 0.00 0.00 4.61
938 3836 4.436998 GGACTCTGGACGCGGGTG 62.437 72.222 10.96 0.00 0.00 4.61
939 3837 4.988716 TGGACTCTGGACGCGGGT 62.989 66.667 12.47 4.12 0.00 5.28
940 3838 4.135153 CTGGACTCTGGACGCGGG 62.135 72.222 12.47 0.00 0.00 6.13
941 3839 3.062466 TCTGGACTCTGGACGCGG 61.062 66.667 12.47 0.00 0.00 6.46
942 3840 2.179517 GTCTGGACTCTGGACGCG 59.820 66.667 3.53 3.53 0.00 6.01
943 3841 3.688086 AGTCTGGACTCTGGACGC 58.312 61.111 0.00 0.00 36.92 5.19
951 3849 1.755008 GGGCTAGCGAGTCTGGACT 60.755 63.158 9.00 2.62 45.84 3.85
982 3880 1.608590 CATTTTGGTTCGCTGACTGGT 59.391 47.619 0.00 0.00 0.00 4.00
984 3882 2.350772 GGTCATTTTGGTTCGCTGACTG 60.351 50.000 0.00 0.00 37.11 3.51
985 3883 1.880027 GGTCATTTTGGTTCGCTGACT 59.120 47.619 0.00 0.00 37.11 3.41
986 3884 1.399727 CGGTCATTTTGGTTCGCTGAC 60.400 52.381 0.00 0.00 36.38 3.51
987 3885 0.871722 CGGTCATTTTGGTTCGCTGA 59.128 50.000 0.00 0.00 0.00 4.26
990 3888 0.168128 CCTCGGTCATTTTGGTTCGC 59.832 55.000 0.00 0.00 0.00 4.70
991 3889 1.803334 TCCTCGGTCATTTTGGTTCG 58.197 50.000 0.00 0.00 0.00 3.95
992 3890 2.488153 CCTTCCTCGGTCATTTTGGTTC 59.512 50.000 0.00 0.00 0.00 3.62
993 3891 2.107552 TCCTTCCTCGGTCATTTTGGTT 59.892 45.455 0.00 0.00 0.00 3.67
994 3892 1.702957 TCCTTCCTCGGTCATTTTGGT 59.297 47.619 0.00 0.00 0.00 3.67
995 3893 2.489938 TCCTTCCTCGGTCATTTTGG 57.510 50.000 0.00 0.00 0.00 3.28
996 3894 2.749621 CCTTCCTTCCTCGGTCATTTTG 59.250 50.000 0.00 0.00 0.00 2.44
1086 3999 3.000819 TTGGCGATGGACTCCGGT 61.001 61.111 0.00 0.00 0.00 5.28
1102 4015 0.897401 GCTGCAAGGGAGAAAGCCTT 60.897 55.000 0.00 0.00 0.00 4.35
1178 4091 4.143333 GAGGCGCTAGCGGGTCAA 62.143 66.667 35.86 0.00 46.35 3.18
1343 4277 4.489771 CGGCACACCCCTCATCCC 62.490 72.222 0.00 0.00 0.00 3.85
1353 4287 4.394712 CTGGTCCCCTCGGCACAC 62.395 72.222 0.00 0.00 0.00 3.82
1383 4317 1.383248 ATCACCCTCCTCCTTCCGG 60.383 63.158 0.00 0.00 0.00 5.14
1397 4331 3.376546 GGCTTTCTCCACAATCTCATCAC 59.623 47.826 0.00 0.00 0.00 3.06
1398 4332 3.009363 TGGCTTTCTCCACAATCTCATCA 59.991 43.478 0.00 0.00 0.00 3.07
1399 4333 3.614092 TGGCTTTCTCCACAATCTCATC 58.386 45.455 0.00 0.00 0.00 2.92
1603 4537 0.723414 ATCACTTCATCAGCAACGCG 59.277 50.000 3.53 3.53 0.00 6.01
1801 4739 3.506455 TCTGTTCGCAAGCTCTACTAAGT 59.494 43.478 0.00 0.00 37.18 2.24
1876 4814 5.587388 ATGGTAAAGCATGTTCCTGAATG 57.413 39.130 0.00 0.00 0.00 2.67
1931 4874 5.200483 TCCCCACTTAATGAATCCATTGAC 58.800 41.667 0.00 0.00 42.55 3.18
1934 4877 8.852671 TTATTTCCCCACTTAATGAATCCATT 57.147 30.769 0.00 0.00 44.56 3.16
2204 5154 1.068333 CAACGCCTCCATTCACTTTGG 60.068 52.381 0.00 0.00 35.45 3.28
2229 5179 1.872952 CAAGCCTCGACACAAACATCA 59.127 47.619 0.00 0.00 0.00 3.07
2364 5315 6.363577 TCTTGTTGCAGAAAAGACACTAAG 57.636 37.500 4.27 0.00 0.00 2.18
2365 5316 6.542005 TCATCTTGTTGCAGAAAAGACACTAA 59.458 34.615 9.24 0.00 33.01 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.