Multiple sequence alignment - TraesCS7B01G297100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G297100 chr7B 100.000 4722 0 0 1 4722 534017477 534022198 0.000000e+00 8720.0
1 TraesCS7B01G297100 chr7D 93.123 3708 201 22 1053 4722 506109593 506113284 0.000000e+00 5385.0
2 TraesCS7B01G297100 chr7D 91.557 912 59 3 3826 4722 506122854 506123762 0.000000e+00 1242.0
3 TraesCS7B01G297100 chr7D 84.634 833 121 7 13 840 8168592 8169422 0.000000e+00 822.0
4 TraesCS7B01G297100 chr7D 83.284 670 105 5 21 686 91780554 91779888 1.120000e-170 610.0
5 TraesCS7B01G297100 chr7D 82.985 670 108 4 21 686 91750226 91749559 6.760000e-168 601.0
6 TraesCS7B01G297100 chr7D 72.160 449 101 15 4269 4713 634289339 634289767 1.070000e-21 115.0
7 TraesCS7B01G297100 chr7A 95.574 1333 52 2 2813 4141 573455173 573456502 0.000000e+00 2128.0
8 TraesCS7B01G297100 chr7A 93.257 786 39 4 1056 1837 573453270 573454045 0.000000e+00 1146.0
9 TraesCS7B01G297100 chr7A 88.786 865 58 14 1872 2724 573454335 573455172 0.000000e+00 1024.0
10 TraesCS7B01G297100 chr7A 85.030 334 12 15 4080 4385 573456800 573457123 5.940000e-79 305.0
11 TraesCS7B01G297100 chr7A 94.068 118 7 0 4411 4528 573635947 573636064 3.750000e-41 180.0
12 TraesCS7B01G297100 chr7A 80.952 105 18 2 526 629 2633021 2632918 1.090000e-11 82.4
13 TraesCS7B01G297100 chr5D 82.484 765 117 12 83 840 388113404 388112650 0.000000e+00 654.0
14 TraesCS7B01G297100 chr1D 86.509 593 77 3 251 840 490878402 490877810 0.000000e+00 649.0
15 TraesCS7B01G297100 chr1D 82.912 673 91 10 175 840 452241024 452240369 6.810000e-163 584.0
16 TraesCS7B01G297100 chr6B 81.365 762 135 6 84 840 38711953 38711194 8.680000e-172 614.0
17 TraesCS7B01G297100 chr2A 75.835 778 100 50 3440 4169 51667561 51668298 9.860000e-82 315.0
18 TraesCS7B01G297100 chr2A 82.270 141 24 1 4559 4699 558523401 558523540 2.310000e-23 121.0
19 TraesCS7B01G297100 chr2D 80.815 417 32 22 3331 3727 50120109 50120497 2.780000e-72 283.0
20 TraesCS7B01G297100 chr2D 82.918 281 19 11 2220 2471 50119397 50119677 4.750000e-55 226.0
21 TraesCS7B01G297100 chr2D 78.055 401 56 15 3790 4167 50120568 50120959 1.710000e-54 224.0
22 TraesCS7B01G297100 chr2B 80.000 240 25 5 3953 4169 77901970 77902209 6.330000e-34 156.0
23 TraesCS7B01G297100 chr2B 80.952 147 26 2 4576 4721 767708191 767708336 1.070000e-21 115.0
24 TraesCS7B01G297100 chr2B 80.272 147 27 2 4576 4721 767741064 767741209 5.000000e-20 110.0
25 TraesCS7B01G297100 chrUn 71.715 449 105 14 4269 4713 474690823 474691253 6.460000e-19 106.0
26 TraesCS7B01G297100 chr3A 76.500 200 44 3 4513 4712 496048389 496048585 6.460000e-19 106.0
27 TraesCS7B01G297100 chr1A 71.939 392 101 3 4301 4692 449845978 449845596 6.460000e-19 106.0
28 TraesCS7B01G297100 chr1B 84.000 75 11 1 856 930 378927377 378927304 2.360000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G297100 chr7B 534017477 534022198 4721 False 8720.000000 8720 100.00000 1 4722 1 chr7B.!!$F1 4721
1 TraesCS7B01G297100 chr7D 506109593 506113284 3691 False 5385.000000 5385 93.12300 1053 4722 1 chr7D.!!$F2 3669
2 TraesCS7B01G297100 chr7D 506122854 506123762 908 False 1242.000000 1242 91.55700 3826 4722 1 chr7D.!!$F3 896
3 TraesCS7B01G297100 chr7D 8168592 8169422 830 False 822.000000 822 84.63400 13 840 1 chr7D.!!$F1 827
4 TraesCS7B01G297100 chr7D 91779888 91780554 666 True 610.000000 610 83.28400 21 686 1 chr7D.!!$R2 665
5 TraesCS7B01G297100 chr7D 91749559 91750226 667 True 601.000000 601 82.98500 21 686 1 chr7D.!!$R1 665
6 TraesCS7B01G297100 chr7A 573453270 573457123 3853 False 1150.750000 2128 90.66175 1056 4385 4 chr7A.!!$F2 3329
7 TraesCS7B01G297100 chr5D 388112650 388113404 754 True 654.000000 654 82.48400 83 840 1 chr5D.!!$R1 757
8 TraesCS7B01G297100 chr1D 490877810 490878402 592 True 649.000000 649 86.50900 251 840 1 chr1D.!!$R2 589
9 TraesCS7B01G297100 chr1D 452240369 452241024 655 True 584.000000 584 82.91200 175 840 1 chr1D.!!$R1 665
10 TraesCS7B01G297100 chr6B 38711194 38711953 759 True 614.000000 614 81.36500 84 840 1 chr6B.!!$R1 756
11 TraesCS7B01G297100 chr2A 51667561 51668298 737 False 315.000000 315 75.83500 3440 4169 1 chr2A.!!$F1 729
12 TraesCS7B01G297100 chr2D 50119397 50120959 1562 False 244.333333 283 80.59600 2220 4167 3 chr2D.!!$F1 1947

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
893 898 0.108585 AACTTGAAGAAGGCGGCTGA 59.891 50.0 14.21 0.00 32.95 4.26 F
909 914 0.250234 CTGATTGCCTCGGAGGAACA 59.750 55.0 27.95 13.89 37.67 3.18 F
977 982 0.333652 TTAAAAGGGGGCTAGGGTGC 59.666 55.0 0.00 0.00 0.00 5.01 F
1002 1007 0.378257 CGTGAAATTCGGCCCTGATG 59.622 55.0 0.00 0.00 0.00 3.07 F
2933 3307 0.322816 GACCAAGCCTGATTGCTCCA 60.323 55.0 0.00 0.00 41.80 3.86 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2572 2882 1.493772 CGACTACTTGTTTGGTGCGA 58.506 50.0 0.00 0.0 0.0 5.10 R
2585 2895 2.879646 AGCTCAGTACTATGCCGACTAC 59.120 50.0 13.53 0.0 0.0 2.73 R
2933 3307 0.545309 TGGCTAGAGACAGGGCACTT 60.545 55.0 0.00 0.0 0.0 3.16 R
3019 3393 1.918868 GACGCGGTTTAGCTTTGGGG 61.919 60.0 12.47 0.0 34.4 4.96 R
4667 5543 0.611714 TAGTTGGTCTTCCGGGCTTC 59.388 55.0 0.00 0.0 36.3 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 4.407621 TCATGTCGGCCTTAAAGGATCTTA 59.592 41.667 0.00 0.00 37.67 2.10
33 34 5.836898 TCGGCCTTAAAGGATCTTACTCATA 59.163 40.000 0.00 0.00 37.67 2.15
56 57 9.070179 CATATGTTTGTTTCTCATATCCATCCA 57.930 33.333 0.00 0.00 34.03 3.41
62 63 5.163311 TGTTTCTCATATCCATCCACGTCAT 60.163 40.000 0.00 0.00 0.00 3.06
64 65 5.904362 TCTCATATCCATCCACGTCATAG 57.096 43.478 0.00 0.00 0.00 2.23
66 67 3.831911 TCATATCCATCCACGTCATAGCA 59.168 43.478 0.00 0.00 0.00 3.49
73 74 4.021456 CCATCCACGTCATAGCAGGTATTA 60.021 45.833 0.00 0.00 0.00 0.98
77 78 4.495422 CACGTCATAGCAGGTATTATCCC 58.505 47.826 0.00 0.00 0.00 3.85
79 80 5.417894 CACGTCATAGCAGGTATTATCCCTA 59.582 44.000 0.00 0.00 0.00 3.53
81 82 6.321690 ACGTCATAGCAGGTATTATCCCTATC 59.678 42.308 0.00 0.00 0.00 2.08
97 98 3.379452 CCTATCTTGTCCTCTTCCACCT 58.621 50.000 0.00 0.00 0.00 4.00
123 124 2.523168 TCCTCTGTGACCACCGCA 60.523 61.111 0.00 0.00 0.00 5.69
127 128 2.279851 CTGTGACCACCGCAACGA 60.280 61.111 0.00 0.00 34.45 3.85
172 173 3.282021 ACCAATCTTCATGAACCATCCG 58.718 45.455 3.38 0.00 0.00 4.18
173 174 3.054434 ACCAATCTTCATGAACCATCCGA 60.054 43.478 3.38 0.00 0.00 4.55
196 197 6.017440 CGACCCTCAAATCTTTGAACACTAAA 60.017 38.462 6.79 0.00 45.61 1.85
202 203 8.169977 TCAAATCTTTGAACACTAAAGCAGAT 57.830 30.769 2.94 0.00 43.62 2.90
207 208 4.350368 TGAACACTAAAGCAGATGGTGA 57.650 40.909 6.85 0.00 0.00 4.02
220 221 2.830923 AGATGGTGAGTGAACTCCAGAG 59.169 50.000 7.96 0.00 42.20 3.35
257 258 2.220653 ATGTCCCAACATCCCACAAG 57.779 50.000 0.00 0.00 42.59 3.16
293 295 5.885912 TCTGGCAACTTCTCATATTTTACCC 59.114 40.000 0.00 0.00 37.61 3.69
308 311 9.214957 CATATTTTACCCAATATCTGACGCTTA 57.785 33.333 0.00 0.00 28.44 3.09
341 344 4.834496 ACCATGGACACAACATTCTTCAAT 59.166 37.500 21.47 0.00 0.00 2.57
365 368 4.631813 GGCTTTGTCACATCGATTCTAACT 59.368 41.667 0.00 0.00 0.00 2.24
368 371 6.454848 GCTTTGTCACATCGATTCTAACTCAG 60.455 42.308 0.00 0.00 0.00 3.35
376 379 6.374613 ACATCGATTCTAACTCAGACACAGTA 59.625 38.462 0.00 0.00 31.12 2.74
395 398 4.381566 CAGTAAAAGTTTCCCGCAAAATCG 59.618 41.667 0.00 0.00 0.00 3.34
416 419 3.324993 GTGAGAGAGAGGTTCAGCAAAG 58.675 50.000 0.00 0.00 0.00 2.77
434 437 5.780793 AGCAAAGAGAACTTCTCCTACCTTA 59.219 40.000 14.19 0.00 44.42 2.69
491 494 3.418995 GGGGACATCATGGATCTGAATG 58.581 50.000 0.00 0.00 0.00 2.67
530 533 1.244019 GCTTGATGGTGGTCGGCTTT 61.244 55.000 0.00 0.00 0.00 3.51
545 548 2.024414 GGCTTTGTCACCCCATCATAC 58.976 52.381 0.00 0.00 0.00 2.39
546 549 2.620367 GGCTTTGTCACCCCATCATACA 60.620 50.000 0.00 0.00 0.00 2.29
547 550 3.088532 GCTTTGTCACCCCATCATACAA 58.911 45.455 0.00 0.00 0.00 2.41
644 647 6.866248 ACGAAAATTGGATGGTGTACAAATTC 59.134 34.615 0.00 0.00 33.40 2.17
654 657 7.093771 GGATGGTGTACAAATTCTCTTCCAATT 60.094 37.037 0.00 0.00 0.00 2.32
673 676 6.269769 TCCAATTGCCTGAATTTTACCTCTTT 59.730 34.615 0.00 0.00 31.41 2.52
677 680 3.673323 GCCTGAATTTTACCTCTTTGGCG 60.673 47.826 0.00 0.00 40.22 5.69
751 756 4.460263 TGACTGTGTTCACCTTAGCAATT 58.540 39.130 0.37 0.00 0.00 2.32
780 785 1.338200 ACGGACTGCATCTTCTGGAAC 60.338 52.381 0.00 0.00 0.00 3.62
781 786 1.743996 GGACTGCATCTTCTGGAACC 58.256 55.000 0.00 0.00 0.00 3.62
785 790 2.641815 ACTGCATCTTCTGGAACCTCTT 59.358 45.455 0.00 0.00 0.00 2.85
786 791 3.073650 ACTGCATCTTCTGGAACCTCTTT 59.926 43.478 0.00 0.00 0.00 2.52
787 792 4.077822 CTGCATCTTCTGGAACCTCTTTT 58.922 43.478 0.00 0.00 0.00 2.27
793 798 5.940617 TCTTCTGGAACCTCTTTTTCATCA 58.059 37.500 0.00 0.00 0.00 3.07
829 834 2.092699 CAGATCCTCTTCCTTGAACCCC 60.093 54.545 0.00 0.00 0.00 4.95
840 845 0.538057 TTGAACCCCAGCTCTTGCAG 60.538 55.000 0.00 0.00 42.74 4.41
841 846 1.676967 GAACCCCAGCTCTTGCAGG 60.677 63.158 0.00 0.00 44.32 4.85
842 847 3.875510 AACCCCAGCTCTTGCAGGC 62.876 63.158 0.00 0.00 43.51 4.85
843 848 4.355720 CCCCAGCTCTTGCAGGCA 62.356 66.667 10.19 0.00 43.51 4.75
844 849 2.750637 CCCAGCTCTTGCAGGCAG 60.751 66.667 10.19 3.31 43.51 4.85
845 850 2.750637 CCAGCTCTTGCAGGCAGG 60.751 66.667 10.19 7.92 38.98 4.85
846 851 2.750637 CAGCTCTTGCAGGCAGGG 60.751 66.667 3.47 0.00 42.74 4.45
847 852 2.932194 AGCTCTTGCAGGCAGGGA 60.932 61.111 3.47 1.85 42.74 4.20
848 853 2.438075 GCTCTTGCAGGCAGGGAG 60.438 66.667 16.52 16.52 39.41 4.30
849 854 2.271497 CTCTTGCAGGCAGGGAGG 59.729 66.667 14.36 0.29 0.00 4.30
850 855 2.530151 TCTTGCAGGCAGGGAGGT 60.530 61.111 3.47 0.00 0.00 3.85
851 856 2.134630 CTCTTGCAGGCAGGGAGGTT 62.135 60.000 14.36 0.00 0.00 3.50
852 857 1.975407 CTTGCAGGCAGGGAGGTTG 60.975 63.158 0.00 0.00 0.00 3.77
853 858 2.416107 CTTGCAGGCAGGGAGGTTGA 62.416 60.000 0.00 0.00 0.00 3.18
854 859 1.792757 TTGCAGGCAGGGAGGTTGAT 61.793 55.000 0.00 0.00 0.00 2.57
855 860 1.452833 GCAGGCAGGGAGGTTGATC 60.453 63.158 0.00 0.00 0.00 2.92
856 861 1.153289 CAGGCAGGGAGGTTGATCG 60.153 63.158 0.00 0.00 0.00 3.69
857 862 2.190578 GGCAGGGAGGTTGATCGG 59.809 66.667 0.00 0.00 0.00 4.18
858 863 2.514824 GCAGGGAGGTTGATCGGC 60.515 66.667 0.00 0.00 0.00 5.54
859 864 2.202932 CAGGGAGGTTGATCGGCG 60.203 66.667 0.00 0.00 0.00 6.46
860 865 3.470888 AGGGAGGTTGATCGGCGG 61.471 66.667 7.21 0.00 0.00 6.13
862 867 4.467084 GGAGGTTGATCGGCGGCA 62.467 66.667 10.53 2.69 0.00 5.69
863 868 2.435938 GAGGTTGATCGGCGGCAA 60.436 61.111 10.53 9.61 0.00 4.52
864 869 2.436646 AGGTTGATCGGCGGCAAG 60.437 61.111 10.53 0.00 0.00 4.01
865 870 3.508840 GGTTGATCGGCGGCAAGG 61.509 66.667 10.53 0.00 0.00 3.61
866 871 2.435938 GTTGATCGGCGGCAAGGA 60.436 61.111 10.53 0.00 0.00 3.36
867 872 2.435938 TTGATCGGCGGCAAGGAC 60.436 61.111 10.53 0.00 0.00 3.85
868 873 4.812476 TGATCGGCGGCAAGGACG 62.812 66.667 10.53 0.00 40.65 4.79
874 879 4.373116 GCGGCAAGGACGACCAGA 62.373 66.667 6.71 0.00 35.20 3.86
875 880 2.342279 CGGCAAGGACGACCAGAA 59.658 61.111 6.71 0.00 35.20 3.02
876 881 2.027625 CGGCAAGGACGACCAGAAC 61.028 63.158 6.71 0.00 35.20 3.01
877 882 1.371558 GGCAAGGACGACCAGAACT 59.628 57.895 6.71 0.00 38.94 3.01
878 883 0.250338 GGCAAGGACGACCAGAACTT 60.250 55.000 6.71 0.00 38.94 2.66
879 884 0.868406 GCAAGGACGACCAGAACTTG 59.132 55.000 6.71 2.70 38.83 3.16
880 885 1.540363 GCAAGGACGACCAGAACTTGA 60.540 52.381 6.71 0.00 38.43 3.02
881 886 2.833794 CAAGGACGACCAGAACTTGAA 58.166 47.619 6.71 0.00 38.43 2.69
882 887 2.802816 CAAGGACGACCAGAACTTGAAG 59.197 50.000 6.71 0.00 38.43 3.02
883 888 2.317040 AGGACGACCAGAACTTGAAGA 58.683 47.619 6.71 0.00 38.94 2.87
884 889 2.698797 AGGACGACCAGAACTTGAAGAA 59.301 45.455 6.71 0.00 38.94 2.52
885 890 3.060602 GGACGACCAGAACTTGAAGAAG 58.939 50.000 0.00 0.00 35.97 2.85
886 891 3.060602 GACGACCAGAACTTGAAGAAGG 58.939 50.000 0.00 0.00 32.95 3.46
887 892 1.801178 CGACCAGAACTTGAAGAAGGC 59.199 52.381 0.00 0.00 32.95 4.35
888 893 1.801178 GACCAGAACTTGAAGAAGGCG 59.199 52.381 0.00 0.00 32.95 5.52
889 894 1.160137 CCAGAACTTGAAGAAGGCGG 58.840 55.000 0.00 0.00 32.95 6.13
890 895 0.519077 CAGAACTTGAAGAAGGCGGC 59.481 55.000 0.00 0.00 32.95 6.53
891 896 0.398318 AGAACTTGAAGAAGGCGGCT 59.602 50.000 5.25 5.25 32.95 5.52
892 897 0.519077 GAACTTGAAGAAGGCGGCTG 59.481 55.000 14.21 0.00 32.95 4.85
893 898 0.108585 AACTTGAAGAAGGCGGCTGA 59.891 50.000 14.21 0.00 32.95 4.26
894 899 0.326264 ACTTGAAGAAGGCGGCTGAT 59.674 50.000 14.21 0.16 32.95 2.90
895 900 1.271597 ACTTGAAGAAGGCGGCTGATT 60.272 47.619 14.21 10.77 32.95 2.57
896 901 1.131883 CTTGAAGAAGGCGGCTGATTG 59.868 52.381 14.21 0.00 0.00 2.67
897 902 1.308069 TGAAGAAGGCGGCTGATTGC 61.308 55.000 14.21 0.00 41.94 3.56
906 911 2.903357 GCTGATTGCCTCGGAGGA 59.097 61.111 27.95 8.14 37.67 3.71
907 912 1.221840 GCTGATTGCCTCGGAGGAA 59.778 57.895 27.95 15.46 37.67 3.36
908 913 1.092345 GCTGATTGCCTCGGAGGAAC 61.092 60.000 27.95 11.30 37.67 3.62
909 914 0.250234 CTGATTGCCTCGGAGGAACA 59.750 55.000 27.95 13.89 37.67 3.18
910 915 0.690192 TGATTGCCTCGGAGGAACAA 59.310 50.000 27.95 21.28 37.67 2.83
911 916 1.073125 TGATTGCCTCGGAGGAACAAA 59.927 47.619 27.95 14.83 37.67 2.83
912 917 2.159382 GATTGCCTCGGAGGAACAAAA 58.841 47.619 27.95 12.51 37.67 2.44
913 918 1.314730 TTGCCTCGGAGGAACAAAAC 58.685 50.000 27.95 8.34 37.67 2.43
914 919 0.536460 TGCCTCGGAGGAACAAAACC 60.536 55.000 27.95 7.61 37.67 3.27
915 920 1.241990 GCCTCGGAGGAACAAAACCC 61.242 60.000 27.95 2.48 37.67 4.11
916 921 0.400594 CCTCGGAGGAACAAAACCCT 59.599 55.000 19.57 0.00 37.67 4.34
917 922 1.626825 CCTCGGAGGAACAAAACCCTA 59.373 52.381 19.57 0.00 37.67 3.53
918 923 2.039348 CCTCGGAGGAACAAAACCCTAA 59.961 50.000 19.57 0.00 37.67 2.69
919 924 3.072211 CTCGGAGGAACAAAACCCTAAC 58.928 50.000 0.00 0.00 31.84 2.34
920 925 1.802365 CGGAGGAACAAAACCCTAACG 59.198 52.381 0.00 0.00 31.84 3.18
921 926 2.807837 CGGAGGAACAAAACCCTAACGT 60.808 50.000 0.00 0.00 31.84 3.99
922 927 2.551032 GGAGGAACAAAACCCTAACGTG 59.449 50.000 0.00 0.00 31.84 4.49
923 928 3.469739 GAGGAACAAAACCCTAACGTGA 58.530 45.455 0.00 0.00 31.84 4.35
924 929 3.473625 AGGAACAAAACCCTAACGTGAG 58.526 45.455 0.00 0.00 0.00 3.51
925 930 2.551032 GGAACAAAACCCTAACGTGAGG 59.449 50.000 12.63 12.63 36.23 3.86
940 945 3.808583 GAGGGAAACTCGCGTACTT 57.191 52.632 5.77 0.00 36.29 2.24
941 946 2.075979 GAGGGAAACTCGCGTACTTT 57.924 50.000 5.77 1.80 36.29 2.66
942 947 1.991264 GAGGGAAACTCGCGTACTTTC 59.009 52.381 5.77 11.17 36.29 2.62
943 948 1.342174 AGGGAAACTCGCGTACTTTCA 59.658 47.619 19.80 0.00 34.19 2.69
944 949 1.725164 GGGAAACTCGCGTACTTTCAG 59.275 52.381 19.80 7.48 0.00 3.02
945 950 2.401351 GGAAACTCGCGTACTTTCAGT 58.599 47.619 19.80 8.02 0.00 3.41
946 951 3.568538 GGAAACTCGCGTACTTTCAGTA 58.431 45.455 19.80 0.00 0.00 2.74
947 952 3.983344 GGAAACTCGCGTACTTTCAGTAA 59.017 43.478 19.80 0.00 31.62 2.24
948 953 4.089636 GGAAACTCGCGTACTTTCAGTAAG 59.910 45.833 19.80 5.24 39.87 2.34
950 955 4.234530 ACTCGCGTACTTTCAGTAAGTT 57.765 40.909 5.77 0.00 44.73 2.66
951 956 4.614946 ACTCGCGTACTTTCAGTAAGTTT 58.385 39.130 5.77 0.00 44.73 2.66
952 957 5.762045 ACTCGCGTACTTTCAGTAAGTTTA 58.238 37.500 5.77 0.00 44.73 2.01
953 958 6.385033 ACTCGCGTACTTTCAGTAAGTTTAT 58.615 36.000 5.77 0.00 44.73 1.40
954 959 6.865205 ACTCGCGTACTTTCAGTAAGTTTATT 59.135 34.615 5.77 0.00 44.73 1.40
955 960 7.383300 ACTCGCGTACTTTCAGTAAGTTTATTT 59.617 33.333 5.77 0.00 44.73 1.40
956 961 7.503991 TCGCGTACTTTCAGTAAGTTTATTTG 58.496 34.615 5.77 0.00 44.73 2.32
957 962 6.735063 CGCGTACTTTCAGTAAGTTTATTTGG 59.265 38.462 0.00 0.00 44.73 3.28
958 963 7.569957 CGCGTACTTTCAGTAAGTTTATTTGGT 60.570 37.037 0.00 0.00 44.73 3.67
959 964 8.071967 GCGTACTTTCAGTAAGTTTATTTGGTT 58.928 33.333 0.00 0.00 44.73 3.67
967 972 8.862085 TCAGTAAGTTTATTTGGTTAAAAGGGG 58.138 33.333 0.00 0.00 0.00 4.79
968 973 8.092068 CAGTAAGTTTATTTGGTTAAAAGGGGG 58.908 37.037 0.00 0.00 0.00 5.40
969 974 5.492855 AGTTTATTTGGTTAAAAGGGGGC 57.507 39.130 0.00 0.00 0.00 5.80
970 975 5.159637 AGTTTATTTGGTTAAAAGGGGGCT 58.840 37.500 0.00 0.00 0.00 5.19
971 976 6.324544 AGTTTATTTGGTTAAAAGGGGGCTA 58.675 36.000 0.00 0.00 0.00 3.93
972 977 6.439375 AGTTTATTTGGTTAAAAGGGGGCTAG 59.561 38.462 0.00 0.00 0.00 3.42
973 978 2.911552 TTGGTTAAAAGGGGGCTAGG 57.088 50.000 0.00 0.00 0.00 3.02
974 979 1.004436 TGGTTAAAAGGGGGCTAGGG 58.996 55.000 0.00 0.00 0.00 3.53
975 980 1.005228 GGTTAAAAGGGGGCTAGGGT 58.995 55.000 0.00 0.00 0.00 4.34
976 981 1.341679 GGTTAAAAGGGGGCTAGGGTG 60.342 57.143 0.00 0.00 0.00 4.61
977 982 0.333652 TTAAAAGGGGGCTAGGGTGC 59.666 55.000 0.00 0.00 0.00 5.01
991 996 3.370231 GTGCCGGGCCGTGAAATT 61.370 61.111 26.32 0.00 0.00 1.82
992 997 3.059386 TGCCGGGCCGTGAAATTC 61.059 61.111 26.32 5.10 0.00 2.17
993 998 4.174129 GCCGGGCCGTGAAATTCG 62.174 66.667 26.32 7.75 0.00 3.34
999 1004 3.187058 CCGTGAAATTCGGCCCTG 58.813 61.111 0.00 0.00 41.48 4.45
1000 1005 1.376683 CCGTGAAATTCGGCCCTGA 60.377 57.895 0.00 0.00 41.48 3.86
1001 1006 0.748005 CCGTGAAATTCGGCCCTGAT 60.748 55.000 0.00 0.00 41.48 2.90
1002 1007 0.378257 CGTGAAATTCGGCCCTGATG 59.622 55.000 0.00 0.00 0.00 3.07
1003 1008 0.740737 GTGAAATTCGGCCCTGATGG 59.259 55.000 0.00 0.00 37.09 3.51
1013 1018 2.121645 CCCTGATGGCCAGATTTGC 58.878 57.895 13.05 0.00 45.78 3.68
1014 1019 1.731433 CCCTGATGGCCAGATTTGCG 61.731 60.000 13.05 0.00 45.78 4.85
1015 1020 1.065273 CTGATGGCCAGATTTGCGC 59.935 57.895 13.05 0.00 45.78 6.09
1016 1021 1.659622 CTGATGGCCAGATTTGCGCA 61.660 55.000 13.05 5.66 45.78 6.09
1017 1022 1.226773 GATGGCCAGATTTGCGCAC 60.227 57.895 11.12 0.00 0.00 5.34
1018 1023 1.936436 GATGGCCAGATTTGCGCACA 61.936 55.000 11.12 3.02 0.00 4.57
1019 1024 1.534336 ATGGCCAGATTTGCGCACAA 61.534 50.000 11.12 8.67 0.00 3.33
1020 1025 1.444895 GGCCAGATTTGCGCACAAG 60.445 57.895 11.12 0.00 37.04 3.16
1021 1026 2.090524 GCCAGATTTGCGCACAAGC 61.091 57.895 11.12 11.07 37.04 4.01
1054 1059 5.613358 AAAAGTTCAAAGATACTGGAGCG 57.387 39.130 0.00 0.00 0.00 5.03
1055 1060 3.963428 AGTTCAAAGATACTGGAGCGT 57.037 42.857 0.00 0.00 0.00 5.07
1056 1061 5.401531 AAGTTCAAAGATACTGGAGCGTA 57.598 39.130 0.00 0.00 0.00 4.42
1057 1062 4.745649 AGTTCAAAGATACTGGAGCGTAC 58.254 43.478 0.00 0.00 0.00 3.67
1133 1138 2.785679 CCCTCGACATTTCAAAATCGC 58.214 47.619 2.92 0.00 0.00 4.58
1314 1319 0.669932 CGCTGAGCTCAGAGTTGCTT 60.670 55.000 41.20 0.00 46.59 3.91
1531 1537 1.135333 CGCAGGAGGTAGAGAGAAACC 59.865 57.143 0.00 0.00 35.91 3.27
1545 1551 0.398318 GAAACCTGCTCACCTCCTGT 59.602 55.000 0.00 0.00 0.00 4.00
1695 1704 2.907892 TCTGGAGGTGAGATTTGGAGT 58.092 47.619 0.00 0.00 0.00 3.85
1699 1708 2.834549 GGAGGTGAGATTTGGAGTCTGA 59.165 50.000 0.00 0.00 0.00 3.27
1730 1740 2.083715 CCTAGGAAAGGGTGCCCAA 58.916 57.895 1.05 0.00 42.32 4.12
1737 1747 0.965363 AAAGGGTGCCCAATGTAGCG 60.965 55.000 10.26 0.00 38.92 4.26
1744 1754 1.715585 CCCAATGTAGCGCTGTTCG 59.284 57.895 22.90 4.95 42.12 3.95
1775 1785 0.478072 AACCTTCACAGTGCCCATGA 59.522 50.000 0.00 0.00 0.00 3.07
1801 1811 2.270352 TGACGTTTTGCTTGGGAGAT 57.730 45.000 0.00 0.00 0.00 2.75
1824 1834 4.755123 TCTTGGAAGTTGATTCGGTTTCTC 59.245 41.667 0.00 0.00 38.95 2.87
1870 2135 1.000731 CTAGTGCTAGCTCATGAGGGC 59.999 57.143 23.89 11.75 0.00 5.19
1881 2146 3.018856 CTCATGAGGGCTGTTGCATTAA 58.981 45.455 15.38 0.00 41.91 1.40
1883 2148 1.176527 TGAGGGCTGTTGCATTAAGC 58.823 50.000 7.14 7.14 45.96 3.09
1943 2208 3.495453 CGTTTTGGGTAGTTCAGGAGGAA 60.495 47.826 0.00 0.00 0.00 3.36
1982 2247 6.377146 TGGGTATTCAGTAATTGAGCCTTTTC 59.623 38.462 0.00 0.00 37.07 2.29
2037 2302 6.579666 TCTTCAGTGGAATCATCAAAAAGG 57.420 37.500 0.00 0.00 31.34 3.11
2041 2306 7.358770 TCAGTGGAATCATCAAAAAGGAAAA 57.641 32.000 0.00 0.00 0.00 2.29
2045 2316 7.599998 AGTGGAATCATCAAAAAGGAAAAATCG 59.400 33.333 0.00 0.00 0.00 3.34
2097 2368 6.314896 GCAGCATAGTGGATTAAGGATATGAC 59.685 42.308 0.00 0.00 0.00 3.06
2098 2369 7.619050 CAGCATAGTGGATTAAGGATATGACT 58.381 38.462 0.00 0.00 0.00 3.41
2099 2370 8.753133 CAGCATAGTGGATTAAGGATATGACTA 58.247 37.037 0.00 0.00 0.00 2.59
2337 2623 3.219176 TCTGTACTATAGGTCACCCCG 57.781 52.381 4.43 0.00 38.74 5.73
2376 2673 4.092771 TGTACGTGTTATCAGCAGACTC 57.907 45.455 0.00 0.00 0.00 3.36
2413 2710 4.993029 AACCCAAAAGAATCGTCAACAA 57.007 36.364 0.00 0.00 0.00 2.83
2471 2774 1.005215 CCCTTGGAGAGCAATGGAAGT 59.995 52.381 0.00 0.00 0.00 3.01
2475 2778 1.699083 TGGAGAGCAATGGAAGTGTCA 59.301 47.619 0.00 0.00 32.28 3.58
2494 2798 8.836268 AGTGTCAATCGTGGTAGTAATTTTTA 57.164 30.769 0.00 0.00 0.00 1.52
2495 2799 9.444600 AGTGTCAATCGTGGTAGTAATTTTTAT 57.555 29.630 0.00 0.00 0.00 1.40
2496 2800 9.485591 GTGTCAATCGTGGTAGTAATTTTTATG 57.514 33.333 0.00 0.00 0.00 1.90
2497 2801 9.221933 TGTCAATCGTGGTAGTAATTTTTATGT 57.778 29.630 0.00 0.00 0.00 2.29
2500 2804 9.834628 CAATCGTGGTAGTAATTTTTATGTTGT 57.165 29.630 0.00 0.00 0.00 3.32
2542 2850 9.722056 CTTAACATTTAGTGTGAAATAGCATCC 57.278 33.333 0.00 0.00 41.14 3.51
2585 2895 8.119226 TCATTTTTATTTTTCGCACCAAACAAG 58.881 29.630 0.00 0.00 0.00 3.16
2588 2898 7.687005 TTTATTTTTCGCACCAAACAAGTAG 57.313 32.000 0.00 0.00 0.00 2.57
2611 2921 3.683340 TCGGCATAGTACTGAGCTATACG 59.317 47.826 17.40 13.27 33.63 3.06
2679 2989 0.395311 CATGGCTGCCAATCTCCACT 60.395 55.000 27.24 2.94 36.95 4.00
2764 3137 6.952605 TTTTCTCCCCCACCATATATCTAG 57.047 41.667 0.00 0.00 0.00 2.43
2778 3151 7.177878 CCATATATCTAGTTTGGGGCTTGAAT 58.822 38.462 0.00 0.00 0.00 2.57
2933 3307 0.322816 GACCAAGCCTGATTGCTCCA 60.323 55.000 0.00 0.00 41.80 3.86
3083 3457 3.118847 TGTTCAAATTGCACAAGGCTTGA 60.119 39.130 32.50 11.54 45.15 3.02
3086 3460 2.803956 CAAATTGCACAAGGCTTGAAGG 59.196 45.455 32.50 20.78 45.15 3.46
3093 3467 3.683802 CACAAGGCTTGAAGGAAGAGAT 58.316 45.455 32.50 4.00 32.82 2.75
3099 3473 2.355513 GCTTGAAGGAAGAGATGGCAGA 60.356 50.000 0.00 0.00 32.82 4.26
3100 3474 3.871463 GCTTGAAGGAAGAGATGGCAGAA 60.871 47.826 0.00 0.00 32.82 3.02
3145 3519 1.584724 TAAAGAGGCCAGAAGAGGGG 58.415 55.000 5.01 0.00 0.00 4.79
3184 3558 2.235402 GGAGTTCCCATCGGTTCTTGTA 59.765 50.000 0.00 0.00 34.14 2.41
3191 3565 3.430374 CCCATCGGTTCTTGTAGACGAAT 60.430 47.826 0.00 0.00 37.11 3.34
3193 3567 2.602878 TCGGTTCTTGTAGACGAATGC 58.397 47.619 0.00 0.00 0.00 3.56
3202 3576 2.165641 TGTAGACGAATGCAAGACCGAT 59.834 45.455 0.00 0.00 0.00 4.18
3359 3737 1.281577 TGCATGTGGAGCTGATGGTTA 59.718 47.619 0.00 0.00 0.00 2.85
3579 3978 9.695526 CAGTTCAAATATCTGGAATGTCAAAAA 57.304 29.630 0.00 0.00 0.00 1.94
3917 4389 3.715628 AGAGTGTTTGTTTGGTCATGC 57.284 42.857 0.00 0.00 0.00 4.06
3919 4391 3.067180 AGAGTGTTTGTTTGGTCATGCAG 59.933 43.478 0.00 0.00 0.00 4.41
3948 4420 7.824779 GCCTTTTATACTACCCCTAATCATCAG 59.175 40.741 0.00 0.00 0.00 2.90
4020 4499 7.658525 TGATGTATTTAGCATTGTTCCCAAT 57.341 32.000 0.00 0.00 42.03 3.16
4142 4989 2.032030 CACCACGAATCAACAGTTGACC 60.032 50.000 18.49 11.94 43.48 4.02
4286 5162 5.895928 AGAGTTCTTTTTCTGAAAAGCACC 58.104 37.500 14.52 6.23 44.69 5.01
4334 5210 7.521509 AGTATAAAGCACTTCGAACATACAC 57.478 36.000 0.00 0.00 0.00 2.90
4335 5211 5.796350 ATAAAGCACTTCGAACATACACC 57.204 39.130 0.00 0.00 0.00 4.16
4336 5212 2.831685 AGCACTTCGAACATACACCA 57.168 45.000 0.00 0.00 0.00 4.17
4372 5248 2.356673 GGACCACCGAACGACCAC 60.357 66.667 0.00 0.00 0.00 4.16
4403 5279 1.852067 GAACGAGCCACCAACGCATT 61.852 55.000 0.00 0.00 0.00 3.56
4418 5294 0.099436 GCATTGTTGTCATCGCTCCC 59.901 55.000 0.00 0.00 0.00 4.30
4430 5306 1.043116 TCGCTCCCAGATCGGAACAT 61.043 55.000 5.32 0.00 36.56 2.71
4437 5313 2.146342 CCAGATCGGAACATGTATGGC 58.854 52.381 0.00 0.00 36.56 4.40
4451 5327 3.760738 TGTATGGCCTTGTTGATGACAA 58.239 40.909 3.32 0.00 45.70 3.18
4490 5366 1.334869 CATGCCCTTAAGAACCATCGC 59.665 52.381 3.36 0.00 0.00 4.58
4493 5369 0.465642 CCCTTAAGAACCATCGCCCC 60.466 60.000 3.36 0.00 0.00 5.80
4534 5410 5.086058 CGTTGAAACCTTGAATCGTTATGG 58.914 41.667 0.00 0.00 0.00 2.74
4555 5431 7.959689 ATGGAGAACTTGATATCAAATCTCG 57.040 36.000 30.88 19.63 43.06 4.04
4570 5446 2.047370 TCGCCATCGTGCACACAT 60.047 55.556 18.64 4.96 36.96 3.21
4571 5447 0.805711 CTCGCCATCGTGCACACATA 60.806 55.000 18.64 0.00 36.96 2.29
4572 5448 0.390472 TCGCCATCGTGCACACATAA 60.390 50.000 18.64 0.00 36.96 1.90
4573 5449 0.247655 CGCCATCGTGCACACATAAC 60.248 55.000 18.64 0.03 0.00 1.89
4574 5450 0.801872 GCCATCGTGCACACATAACA 59.198 50.000 18.64 0.00 0.00 2.41
4589 5465 6.264518 CACACATAACAAGAAACCCTAACCTT 59.735 38.462 0.00 0.00 0.00 3.50
4593 5469 2.091555 ACAAGAAACCCTAACCTTGCCA 60.092 45.455 0.00 0.00 39.51 4.92
4598 5474 1.372501 ACCCTAACCTTGCCACTCAT 58.627 50.000 0.00 0.00 0.00 2.90
4605 5481 0.835941 CCTTGCCACTCATAGGAGCT 59.164 55.000 3.87 0.00 45.42 4.09
4606 5482 1.474677 CCTTGCCACTCATAGGAGCTG 60.475 57.143 3.87 2.45 45.42 4.24
4607 5483 1.209019 CTTGCCACTCATAGGAGCTGT 59.791 52.381 3.87 0.00 45.42 4.40
4667 5543 1.268352 GGATGAACTCGAGGAGGATCG 59.732 57.143 18.41 0.00 44.07 3.69
4707 5583 0.181350 AAGATGAAGCGTCCCCATCC 59.819 55.000 0.00 0.00 37.88 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.874701 CCTTTAAGGCCGACATGAGATG 59.125 50.000 0.00 0.00 0.00 2.90
1 2 2.771943 TCCTTTAAGGCCGACATGAGAT 59.228 45.455 6.05 0.00 34.61 2.75
2 3 2.184533 TCCTTTAAGGCCGACATGAGA 58.815 47.619 6.05 0.00 34.61 3.27
3 4 2.691409 TCCTTTAAGGCCGACATGAG 57.309 50.000 6.05 0.00 34.61 2.90
7 8 3.773119 AGTAAGATCCTTTAAGGCCGACA 59.227 43.478 6.05 0.00 34.61 4.35
8 9 4.142004 TGAGTAAGATCCTTTAAGGCCGAC 60.142 45.833 6.05 5.05 34.61 4.79
9 10 4.028131 TGAGTAAGATCCTTTAAGGCCGA 58.972 43.478 6.05 0.00 34.61 5.54
10 11 4.402056 TGAGTAAGATCCTTTAAGGCCG 57.598 45.455 6.05 0.00 34.61 6.13
11 12 7.454225 ACATATGAGTAAGATCCTTTAAGGCC 58.546 38.462 10.38 0.00 34.61 5.19
12 13 8.910351 AACATATGAGTAAGATCCTTTAAGGC 57.090 34.615 10.38 0.00 34.61 4.35
18 19 9.965902 AGAAACAAACATATGAGTAAGATCCTT 57.034 29.630 10.38 0.00 0.00 3.36
19 20 9.606631 GAGAAACAAACATATGAGTAAGATCCT 57.393 33.333 10.38 0.00 0.00 3.24
27 28 9.857656 ATGGATATGAGAAACAAACATATGAGT 57.142 29.630 10.38 2.08 37.35 3.41
33 34 6.038603 CGTGGATGGATATGAGAAACAAACAT 59.961 38.462 0.00 0.00 0.00 2.71
48 49 1.345741 CCTGCTATGACGTGGATGGAT 59.654 52.381 0.00 0.00 0.00 3.41
56 57 4.417437 AGGGATAATACCTGCTATGACGT 58.583 43.478 0.00 0.00 36.85 4.34
62 63 6.668283 GGACAAGATAGGGATAATACCTGCTA 59.332 42.308 0.00 0.00 39.12 3.49
64 65 5.485708 AGGACAAGATAGGGATAATACCTGC 59.514 44.000 0.00 0.00 39.12 4.85
66 67 7.122311 AGAGGACAAGATAGGGATAATACCT 57.878 40.000 0.00 0.00 42.15 3.08
73 74 3.970640 GTGGAAGAGGACAAGATAGGGAT 59.029 47.826 0.00 0.00 0.00 3.85
77 78 3.772025 ACAGGTGGAAGAGGACAAGATAG 59.228 47.826 0.00 0.00 0.00 2.08
79 80 2.625639 ACAGGTGGAAGAGGACAAGAT 58.374 47.619 0.00 0.00 0.00 2.40
81 82 2.352814 CGTACAGGTGGAAGAGGACAAG 60.353 54.545 0.00 0.00 0.00 3.16
97 98 1.076014 TCACAGAGGAGGGCGTACA 59.924 57.895 0.00 0.00 0.00 2.90
145 146 3.369471 GGTTCATGAAGATTGGTCGAGGA 60.369 47.826 8.80 0.00 0.00 3.71
155 156 2.158755 GGGTCGGATGGTTCATGAAGAT 60.159 50.000 8.80 3.91 0.00 2.40
172 173 6.877611 TTAGTGTTCAAAGATTTGAGGGTC 57.122 37.500 7.95 2.81 46.68 4.46
173 174 6.239036 GCTTTAGTGTTCAAAGATTTGAGGGT 60.239 38.462 7.95 0.00 46.68 4.34
196 197 1.277557 GGAGTTCACTCACCATCTGCT 59.722 52.381 9.18 0.00 44.60 4.24
202 203 0.681733 GCTCTGGAGTTCACTCACCA 59.318 55.000 9.18 0.00 44.60 4.17
207 208 1.115930 ACACGGCTCTGGAGTTCACT 61.116 55.000 0.00 0.00 0.00 3.41
220 221 1.734465 CATCTCTTCAAGGAACACGGC 59.266 52.381 0.00 0.00 0.00 5.68
257 258 1.200020 GTTGCCAGATTGGTGTGTAGC 59.800 52.381 0.00 0.00 40.46 3.58
293 295 3.555168 GGGGAGGTAAGCGTCAGATATTG 60.555 52.174 0.00 0.00 0.00 1.90
308 311 1.616628 GTCCATGGTCAGGGGAGGT 60.617 63.158 12.58 0.00 32.15 3.85
341 344 3.057969 AGAATCGATGTGACAAAGCCA 57.942 42.857 0.00 0.00 0.00 4.75
365 368 4.124238 CGGGAAACTTTTACTGTGTCTGA 58.876 43.478 0.00 0.00 0.00 3.27
368 371 2.614983 TGCGGGAAACTTTTACTGTGTC 59.385 45.455 0.00 0.00 29.78 3.67
376 379 3.120041 CACGATTTTGCGGGAAACTTTT 58.880 40.909 0.00 0.00 36.64 2.27
395 398 3.006323 TCTTTGCTGAACCTCTCTCTCAC 59.994 47.826 0.00 0.00 0.00 3.51
402 405 4.102367 AGAAGTTCTCTTTGCTGAACCTCT 59.898 41.667 0.00 0.00 42.32 3.69
416 419 3.380954 CGGGTAAGGTAGGAGAAGTTCTC 59.619 52.174 22.47 22.47 42.66 2.87
450 453 0.954452 GACTTGTTTGCTCACCTGGG 59.046 55.000 0.00 0.00 0.00 4.45
451 454 0.588252 CGACTTGTTTGCTCACCTGG 59.412 55.000 0.00 0.00 0.00 4.45
491 494 3.944015 AGCTGGACACAATAGAAATCTGC 59.056 43.478 0.00 0.00 0.00 4.26
497 500 4.263462 ACCATCAAGCTGGACACAATAGAA 60.263 41.667 0.00 0.00 39.73 2.10
530 533 3.329225 TCAAGTTGTATGATGGGGTGACA 59.671 43.478 2.11 0.00 0.00 3.58
566 569 4.820744 CCATGGCACTTCCGGGGG 62.821 72.222 0.00 0.00 37.80 5.40
571 574 1.745489 GACGGTCCATGGCACTTCC 60.745 63.158 6.96 3.46 0.00 3.46
644 647 6.071165 AGGTAAAATTCAGGCAATTGGAAGAG 60.071 38.462 7.72 0.00 34.69 2.85
654 657 3.258123 GCCAAAGAGGTAAAATTCAGGCA 59.742 43.478 0.00 0.00 40.61 4.75
673 676 4.100084 CTGCATGGGACCTCGCCA 62.100 66.667 0.00 0.00 0.00 5.69
677 680 1.126488 TGAGATCTGCATGGGACCTC 58.874 55.000 0.00 0.00 0.00 3.85
710 713 7.653713 CACAGTCAAAACCTATAGCCATACTAG 59.346 40.741 0.00 0.00 33.29 2.57
711 714 7.125204 ACACAGTCAAAACCTATAGCCATACTA 59.875 37.037 0.00 0.00 34.64 1.82
712 715 6.070194 ACACAGTCAAAACCTATAGCCATACT 60.070 38.462 0.00 0.00 0.00 2.12
715 720 5.179452 ACACAGTCAAAACCTATAGCCAT 57.821 39.130 0.00 0.00 0.00 4.40
751 756 2.904866 GCAGTCCGTTGGGTTGCA 60.905 61.111 7.35 0.00 41.46 4.08
780 785 7.874940 TGATGTAGTGTTTGATGAAAAAGAGG 58.125 34.615 0.00 0.00 0.00 3.69
781 786 9.552114 GATGATGTAGTGTTTGATGAAAAAGAG 57.448 33.333 0.00 0.00 0.00 2.85
785 790 7.665145 TCTGGATGATGTAGTGTTTGATGAAAA 59.335 33.333 0.00 0.00 0.00 2.29
786 791 7.167535 TCTGGATGATGTAGTGTTTGATGAAA 58.832 34.615 0.00 0.00 0.00 2.69
787 792 6.710278 TCTGGATGATGTAGTGTTTGATGAA 58.290 36.000 0.00 0.00 0.00 2.57
793 798 5.923204 GAGGATCTGGATGATGTAGTGTTT 58.077 41.667 0.00 0.00 35.14 2.83
829 834 2.750637 CCCTGCCTGCAAGAGCTG 60.751 66.667 0.00 4.26 42.74 4.24
840 845 2.190578 CCGATCAACCTCCCTGCC 59.809 66.667 0.00 0.00 0.00 4.85
841 846 2.514824 GCCGATCAACCTCCCTGC 60.515 66.667 0.00 0.00 0.00 4.85
842 847 2.202932 CGCCGATCAACCTCCCTG 60.203 66.667 0.00 0.00 0.00 4.45
843 848 3.470888 CCGCCGATCAACCTCCCT 61.471 66.667 0.00 0.00 0.00 4.20
845 850 3.969250 TTGCCGCCGATCAACCTCC 62.969 63.158 0.00 0.00 0.00 4.30
846 851 2.435938 TTGCCGCCGATCAACCTC 60.436 61.111 0.00 0.00 0.00 3.85
847 852 2.436646 CTTGCCGCCGATCAACCT 60.437 61.111 0.00 0.00 0.00 3.50
848 853 3.508840 CCTTGCCGCCGATCAACC 61.509 66.667 0.00 0.00 0.00 3.77
849 854 2.435938 TCCTTGCCGCCGATCAAC 60.436 61.111 0.00 0.00 0.00 3.18
850 855 2.435938 GTCCTTGCCGCCGATCAA 60.436 61.111 0.00 0.00 0.00 2.57
851 856 4.812476 CGTCCTTGCCGCCGATCA 62.812 66.667 0.00 0.00 0.00 2.92
852 857 4.508128 TCGTCCTTGCCGCCGATC 62.508 66.667 0.00 0.00 0.00 3.69
853 858 4.814294 GTCGTCCTTGCCGCCGAT 62.814 66.667 0.00 0.00 0.00 4.18
857 862 3.876589 TTCTGGTCGTCCTTGCCGC 62.877 63.158 0.00 0.00 34.23 6.53
858 863 2.027625 GTTCTGGTCGTCCTTGCCG 61.028 63.158 0.00 0.00 34.23 5.69
859 864 0.250338 AAGTTCTGGTCGTCCTTGCC 60.250 55.000 0.00 0.00 34.23 4.52
860 865 0.868406 CAAGTTCTGGTCGTCCTTGC 59.132 55.000 0.00 0.00 34.23 4.01
861 866 2.526304 TCAAGTTCTGGTCGTCCTTG 57.474 50.000 0.00 0.00 35.09 3.61
862 867 2.698797 TCTTCAAGTTCTGGTCGTCCTT 59.301 45.455 0.00 0.00 34.23 3.36
863 868 2.317040 TCTTCAAGTTCTGGTCGTCCT 58.683 47.619 0.00 0.00 34.23 3.85
864 869 2.814280 TCTTCAAGTTCTGGTCGTCC 57.186 50.000 0.00 0.00 0.00 4.79
865 870 3.060602 CCTTCTTCAAGTTCTGGTCGTC 58.939 50.000 0.00 0.00 0.00 4.20
866 871 2.807108 GCCTTCTTCAAGTTCTGGTCGT 60.807 50.000 0.00 0.00 0.00 4.34
867 872 1.801178 GCCTTCTTCAAGTTCTGGTCG 59.199 52.381 0.00 0.00 0.00 4.79
868 873 1.801178 CGCCTTCTTCAAGTTCTGGTC 59.199 52.381 0.00 0.00 0.00 4.02
869 874 1.543429 CCGCCTTCTTCAAGTTCTGGT 60.543 52.381 0.00 0.00 0.00 4.00
870 875 1.160137 CCGCCTTCTTCAAGTTCTGG 58.840 55.000 0.00 0.00 0.00 3.86
871 876 0.519077 GCCGCCTTCTTCAAGTTCTG 59.481 55.000 0.00 0.00 0.00 3.02
872 877 0.398318 AGCCGCCTTCTTCAAGTTCT 59.602 50.000 0.00 0.00 0.00 3.01
873 878 0.519077 CAGCCGCCTTCTTCAAGTTC 59.481 55.000 0.00 0.00 0.00 3.01
874 879 0.108585 TCAGCCGCCTTCTTCAAGTT 59.891 50.000 0.00 0.00 0.00 2.66
875 880 0.326264 ATCAGCCGCCTTCTTCAAGT 59.674 50.000 0.00 0.00 0.00 3.16
876 881 1.131883 CAATCAGCCGCCTTCTTCAAG 59.868 52.381 0.00 0.00 0.00 3.02
877 882 1.167851 CAATCAGCCGCCTTCTTCAA 58.832 50.000 0.00 0.00 0.00 2.69
878 883 1.308069 GCAATCAGCCGCCTTCTTCA 61.308 55.000 0.00 0.00 37.23 3.02
879 884 1.431036 GCAATCAGCCGCCTTCTTC 59.569 57.895 0.00 0.00 37.23 2.87
880 885 3.595819 GCAATCAGCCGCCTTCTT 58.404 55.556 0.00 0.00 37.23 2.52
889 894 1.092345 GTTCCTCCGAGGCAATCAGC 61.092 60.000 9.87 0.00 44.65 4.26
890 895 0.250234 TGTTCCTCCGAGGCAATCAG 59.750 55.000 9.87 0.00 34.61 2.90
891 896 0.690192 TTGTTCCTCCGAGGCAATCA 59.310 50.000 9.87 3.50 34.61 2.57
892 897 1.821216 TTTGTTCCTCCGAGGCAATC 58.179 50.000 9.87 1.01 34.61 2.67
893 898 1.886542 GTTTTGTTCCTCCGAGGCAAT 59.113 47.619 9.87 0.00 34.61 3.56
894 899 1.314730 GTTTTGTTCCTCCGAGGCAA 58.685 50.000 9.87 6.48 34.61 4.52
895 900 0.536460 GGTTTTGTTCCTCCGAGGCA 60.536 55.000 9.87 0.00 34.61 4.75
896 901 1.241990 GGGTTTTGTTCCTCCGAGGC 61.242 60.000 9.87 0.00 34.61 4.70
897 902 0.400594 AGGGTTTTGTTCCTCCGAGG 59.599 55.000 8.30 8.30 36.46 4.63
898 903 3.072211 GTTAGGGTTTTGTTCCTCCGAG 58.928 50.000 0.00 0.00 34.75 4.63
899 904 2.548493 CGTTAGGGTTTTGTTCCTCCGA 60.548 50.000 0.00 0.00 34.75 4.55
900 905 1.802365 CGTTAGGGTTTTGTTCCTCCG 59.198 52.381 0.00 0.00 34.75 4.63
901 906 2.551032 CACGTTAGGGTTTTGTTCCTCC 59.449 50.000 0.00 0.00 34.75 4.30
902 907 3.469739 TCACGTTAGGGTTTTGTTCCTC 58.530 45.455 0.00 0.00 34.75 3.71
903 908 3.473625 CTCACGTTAGGGTTTTGTTCCT 58.526 45.455 0.00 0.00 37.18 3.36
904 909 2.551032 CCTCACGTTAGGGTTTTGTTCC 59.449 50.000 7.98 0.00 32.55 3.62
905 910 3.891056 CCTCACGTTAGGGTTTTGTTC 57.109 47.619 7.98 0.00 32.55 3.18
914 919 1.992170 CGAGTTTCCCTCACGTTAGG 58.008 55.000 8.93 8.93 40.48 2.69
915 920 1.347320 GCGAGTTTCCCTCACGTTAG 58.653 55.000 0.00 0.00 40.48 2.34
916 921 0.387622 CGCGAGTTTCCCTCACGTTA 60.388 55.000 0.00 0.00 40.12 3.18
917 922 1.663702 CGCGAGTTTCCCTCACGTT 60.664 57.895 0.00 0.00 40.12 3.99
918 923 2.049433 CGCGAGTTTCCCTCACGT 60.049 61.111 0.00 0.00 40.12 4.49
920 925 0.243095 AGTACGCGAGTTTCCCTCAC 59.757 55.000 15.93 0.00 46.40 3.51
921 926 0.963962 AAGTACGCGAGTTTCCCTCA 59.036 50.000 15.93 0.00 46.40 3.86
922 927 1.991264 GAAAGTACGCGAGTTTCCCTC 59.009 52.381 15.93 0.00 46.40 4.30
923 928 1.342174 TGAAAGTACGCGAGTTTCCCT 59.658 47.619 23.63 2.51 46.40 4.20
924 929 1.725164 CTGAAAGTACGCGAGTTTCCC 59.275 52.381 23.63 10.83 46.40 3.97
941 946 8.862085 CCCCTTTTAACCAAATAAACTTACTGA 58.138 33.333 0.00 0.00 0.00 3.41
942 947 8.092068 CCCCCTTTTAACCAAATAAACTTACTG 58.908 37.037 0.00 0.00 0.00 2.74
943 948 7.256404 GCCCCCTTTTAACCAAATAAACTTACT 60.256 37.037 0.00 0.00 0.00 2.24
944 949 6.875195 GCCCCCTTTTAACCAAATAAACTTAC 59.125 38.462 0.00 0.00 0.00 2.34
945 950 6.788456 AGCCCCCTTTTAACCAAATAAACTTA 59.212 34.615 0.00 0.00 0.00 2.24
946 951 5.609284 AGCCCCCTTTTAACCAAATAAACTT 59.391 36.000 0.00 0.00 0.00 2.66
947 952 5.159637 AGCCCCCTTTTAACCAAATAAACT 58.840 37.500 0.00 0.00 0.00 2.66
948 953 5.492855 AGCCCCCTTTTAACCAAATAAAC 57.507 39.130 0.00 0.00 0.00 2.01
949 954 5.722441 CCTAGCCCCCTTTTAACCAAATAAA 59.278 40.000 0.00 0.00 0.00 1.40
950 955 5.274015 CCTAGCCCCCTTTTAACCAAATAA 58.726 41.667 0.00 0.00 0.00 1.40
951 956 4.326291 CCCTAGCCCCCTTTTAACCAAATA 60.326 45.833 0.00 0.00 0.00 1.40
952 957 3.567886 CCCTAGCCCCCTTTTAACCAAAT 60.568 47.826 0.00 0.00 0.00 2.32
953 958 2.225420 CCCTAGCCCCCTTTTAACCAAA 60.225 50.000 0.00 0.00 0.00 3.28
954 959 1.359818 CCCTAGCCCCCTTTTAACCAA 59.640 52.381 0.00 0.00 0.00 3.67
955 960 1.004436 CCCTAGCCCCCTTTTAACCA 58.996 55.000 0.00 0.00 0.00 3.67
956 961 1.005228 ACCCTAGCCCCCTTTTAACC 58.995 55.000 0.00 0.00 0.00 2.85
957 962 1.958549 GCACCCTAGCCCCCTTTTAAC 60.959 57.143 0.00 0.00 0.00 2.01
958 963 0.333652 GCACCCTAGCCCCCTTTTAA 59.666 55.000 0.00 0.00 0.00 1.52
959 964 2.004270 GCACCCTAGCCCCCTTTTA 58.996 57.895 0.00 0.00 0.00 1.52
960 965 2.770827 GCACCCTAGCCCCCTTTT 59.229 61.111 0.00 0.00 0.00 2.27
974 979 3.336715 GAATTTCACGGCCCGGCAC 62.337 63.158 12.58 0.00 0.00 5.01
975 980 3.059386 GAATTTCACGGCCCGGCA 61.059 61.111 12.58 0.00 0.00 5.69
976 981 4.174129 CGAATTTCACGGCCCGGC 62.174 66.667 8.57 0.00 0.00 6.13
977 982 3.505184 CCGAATTTCACGGCCCGG 61.505 66.667 8.57 0.00 43.74 5.73
983 988 0.378257 CATCAGGGCCGAATTTCACG 59.622 55.000 0.00 0.00 0.00 4.35
984 989 0.740737 CCATCAGGGCCGAATTTCAC 59.259 55.000 0.00 0.00 0.00 3.18
985 990 3.189568 CCATCAGGGCCGAATTTCA 57.810 52.632 0.00 0.00 0.00 2.69
995 1000 1.731433 CGCAAATCTGGCCATCAGGG 61.731 60.000 5.51 0.00 43.53 4.45
996 1001 1.731700 CGCAAATCTGGCCATCAGG 59.268 57.895 5.51 0.00 43.53 3.86
997 1002 1.065273 GCGCAAATCTGGCCATCAG 59.935 57.895 5.51 0.00 44.68 2.90
998 1003 1.678300 TGCGCAAATCTGGCCATCA 60.678 52.632 8.16 0.00 0.00 3.07
999 1004 1.226773 GTGCGCAAATCTGGCCATC 60.227 57.895 14.00 0.00 0.00 3.51
1000 1005 1.534336 TTGTGCGCAAATCTGGCCAT 61.534 50.000 14.00 0.00 0.00 4.40
1001 1006 2.144833 CTTGTGCGCAAATCTGGCCA 62.145 55.000 14.00 4.71 33.73 5.36
1002 1007 1.444895 CTTGTGCGCAAATCTGGCC 60.445 57.895 14.00 0.00 33.73 5.36
1003 1008 2.090524 GCTTGTGCGCAAATCTGGC 61.091 57.895 14.00 9.66 33.73 4.85
1004 1009 4.157817 GCTTGTGCGCAAATCTGG 57.842 55.556 14.00 2.96 33.73 3.86
1031 1036 5.531287 ACGCTCCAGTATCTTTGAACTTTTT 59.469 36.000 0.00 0.00 0.00 1.94
1032 1037 5.063880 ACGCTCCAGTATCTTTGAACTTTT 58.936 37.500 0.00 0.00 0.00 2.27
1033 1038 4.642429 ACGCTCCAGTATCTTTGAACTTT 58.358 39.130 0.00 0.00 0.00 2.66
1034 1039 4.273148 ACGCTCCAGTATCTTTGAACTT 57.727 40.909 0.00 0.00 0.00 2.66
1035 1040 3.963428 ACGCTCCAGTATCTTTGAACT 57.037 42.857 0.00 0.00 0.00 3.01
1036 1041 4.491676 TGTACGCTCCAGTATCTTTGAAC 58.508 43.478 0.00 0.00 0.00 3.18
1037 1042 4.794278 TGTACGCTCCAGTATCTTTGAA 57.206 40.909 0.00 0.00 0.00 2.69
1038 1043 4.794278 TTGTACGCTCCAGTATCTTTGA 57.206 40.909 0.00 0.00 0.00 2.69
1039 1044 5.062308 GTCTTTGTACGCTCCAGTATCTTTG 59.938 44.000 0.00 0.00 0.00 2.77
1040 1045 5.047235 AGTCTTTGTACGCTCCAGTATCTTT 60.047 40.000 0.00 0.00 0.00 2.52
1041 1046 4.463186 AGTCTTTGTACGCTCCAGTATCTT 59.537 41.667 0.00 0.00 0.00 2.40
1042 1047 4.017808 AGTCTTTGTACGCTCCAGTATCT 58.982 43.478 0.00 0.00 0.00 1.98
1043 1048 4.096682 AGAGTCTTTGTACGCTCCAGTATC 59.903 45.833 0.00 0.00 0.00 2.24
1044 1049 4.017808 AGAGTCTTTGTACGCTCCAGTAT 58.982 43.478 0.00 0.00 0.00 2.12
1045 1050 3.418995 AGAGTCTTTGTACGCTCCAGTA 58.581 45.455 0.00 0.00 0.00 2.74
1046 1051 2.240279 AGAGTCTTTGTACGCTCCAGT 58.760 47.619 0.00 0.00 0.00 4.00
1047 1052 3.057174 AGAAGAGTCTTTGTACGCTCCAG 60.057 47.826 6.88 0.00 0.00 3.86
1048 1053 2.891580 AGAAGAGTCTTTGTACGCTCCA 59.108 45.455 6.88 0.00 0.00 3.86
1049 1054 3.579335 AGAAGAGTCTTTGTACGCTCC 57.421 47.619 6.88 0.00 0.00 4.70
1050 1055 4.800784 AGAAGAAGAGTCTTTGTACGCTC 58.199 43.478 6.88 0.00 44.42 5.03
1051 1056 4.857509 AGAAGAAGAGTCTTTGTACGCT 57.142 40.909 6.88 0.00 44.42 5.07
1052 1057 4.088781 CGAAGAAGAAGAGTCTTTGTACGC 59.911 45.833 6.88 0.00 44.42 4.42
1053 1058 4.088781 GCGAAGAAGAAGAGTCTTTGTACG 59.911 45.833 6.88 9.60 44.42 3.67
1054 1059 5.224135 AGCGAAGAAGAAGAGTCTTTGTAC 58.776 41.667 6.88 0.00 44.42 2.90
1055 1060 5.455056 AGCGAAGAAGAAGAGTCTTTGTA 57.545 39.130 6.88 0.00 44.42 2.41
1056 1061 4.303282 GAGCGAAGAAGAAGAGTCTTTGT 58.697 43.478 6.88 0.00 44.42 2.83
1057 1062 3.677596 GGAGCGAAGAAGAAGAGTCTTTG 59.322 47.826 6.88 0.00 44.42 2.77
1142 1147 3.950794 TTGGCCATGGACTCGACGC 62.951 63.158 21.02 0.00 0.00 5.19
1143 1148 1.811266 CTTGGCCATGGACTCGACG 60.811 63.158 21.02 0.00 0.00 5.12
1144 1149 0.460987 CTCTTGGCCATGGACTCGAC 60.461 60.000 21.02 0.00 0.00 4.20
1145 1150 1.900351 CTCTTGGCCATGGACTCGA 59.100 57.895 21.02 13.90 0.00 4.04
1146 1151 1.817099 GCTCTTGGCCATGGACTCG 60.817 63.158 21.02 9.88 34.27 4.18
1147 1152 4.232310 GCTCTTGGCCATGGACTC 57.768 61.111 21.02 6.18 34.27 3.36
1189 1194 2.281208 CCGCGGTTTTCTGGTGGA 60.281 61.111 19.50 0.00 33.15 4.02
1300 1305 0.320247 CACCGAAGCAACTCTGAGCT 60.320 55.000 4.19 0.00 44.31 4.09
1305 1310 1.899814 TCATACCACCGAAGCAACTCT 59.100 47.619 0.00 0.00 0.00 3.24
1307 1312 1.671850 CGTCATACCACCGAAGCAACT 60.672 52.381 0.00 0.00 0.00 3.16
1314 1319 3.750155 TGCGCGTCATACCACCGA 61.750 61.111 8.43 0.00 0.00 4.69
1604 1610 0.469144 TCCTGCAACAAGGAAACCCC 60.469 55.000 0.00 0.00 43.57 4.95
1695 1704 2.048444 AGGGTTCTACGCGTATCAGA 57.952 50.000 20.91 13.08 36.04 3.27
1699 1708 2.645838 TCCTAGGGTTCTACGCGTAT 57.354 50.000 20.91 6.21 36.04 3.06
1737 1747 2.663063 GTTGCAGAAACTAGCGAACAGC 60.663 50.000 0.00 0.00 40.03 4.40
1744 1754 2.878406 TGTGAAGGTTGCAGAAACTAGC 59.122 45.455 0.00 0.00 38.92 3.42
1745 1755 4.024556 CACTGTGAAGGTTGCAGAAACTAG 60.025 45.833 0.32 0.00 38.92 2.57
1775 1785 2.416701 CCAAGCAAAACGTCAAACAGGT 60.417 45.455 0.00 0.00 0.00 4.00
1801 1811 4.714632 AGAAACCGAATCAACTTCCAAGA 58.285 39.130 0.00 0.00 0.00 3.02
1840 1850 1.684450 GCTAGCACTAGAACCTCCCTC 59.316 57.143 10.63 0.00 35.21 4.30
1870 2135 4.114794 GGCCAATAAGCTTAATGCAACAG 58.885 43.478 14.94 3.72 45.94 3.16
2014 2279 6.306199 TCCTTTTTGATGATTCCACTGAAGA 58.694 36.000 0.00 0.00 33.05 2.87
2028 2293 5.691754 GCACTGACGATTTTTCCTTTTTGAT 59.308 36.000 0.00 0.00 0.00 2.57
2036 2301 4.222114 CAAGAAGCACTGACGATTTTTCC 58.778 43.478 0.00 0.00 0.00 3.13
2037 2302 4.222114 CCAAGAAGCACTGACGATTTTTC 58.778 43.478 0.00 0.00 0.00 2.29
2041 2306 2.224281 TGACCAAGAAGCACTGACGATT 60.224 45.455 0.00 0.00 0.00 3.34
2045 2316 4.193826 TCTATGACCAAGAAGCACTGAC 57.806 45.455 0.00 0.00 0.00 3.51
2097 2368 9.780186 CCCTACTTTCCCATAAATAGAAACTAG 57.220 37.037 0.00 0.00 0.00 2.57
2098 2369 9.510062 TCCCTACTTTCCCATAAATAGAAACTA 57.490 33.333 0.00 0.00 0.00 2.24
2099 2370 8.401955 TCCCTACTTTCCCATAAATAGAAACT 57.598 34.615 0.00 0.00 0.00 2.66
2115 2386 3.728385 ATCTGCTTTGCTCCCTACTTT 57.272 42.857 0.00 0.00 0.00 2.66
2255 2529 8.820933 CACGAAGATGCTTATTTAAAGATGAGA 58.179 33.333 0.00 0.00 0.00 3.27
2306 2588 7.981789 TGACCTATAGTACAGAAATGAAGCAAG 59.018 37.037 0.00 0.00 0.00 4.01
2337 2623 3.665745 ACAACATTTCCATCCACAAGC 57.334 42.857 0.00 0.00 0.00 4.01
2376 2673 4.191033 TGGGTTATCAGCAATTGCAAAG 57.809 40.909 30.89 19.83 45.16 2.77
2413 2710 7.068348 TCGTGCTACTTACCAGAATCTCTTTAT 59.932 37.037 0.00 0.00 0.00 1.40
2471 2774 9.221933 ACATAAAAATTACTACCACGATTGACA 57.778 29.630 0.00 0.00 0.00 3.58
2572 2882 1.493772 CGACTACTTGTTTGGTGCGA 58.506 50.000 0.00 0.00 0.00 5.10
2585 2895 2.879646 AGCTCAGTACTATGCCGACTAC 59.120 50.000 13.53 0.00 0.00 2.73
2588 2898 4.435784 CGTATAGCTCAGTACTATGCCGAC 60.436 50.000 13.53 9.36 32.25 4.79
2611 2921 9.918630 ATCAGCAATTGGTAATATTAATTGAGC 57.081 29.630 19.50 10.72 41.81 4.26
2679 2989 4.020218 AGGATACAGCTTGCACTTAAGTCA 60.020 41.667 4.77 4.49 41.41 3.41
2764 3137 5.067805 CAGTATAAGGATTCAAGCCCCAAAC 59.932 44.000 0.00 0.00 0.00 2.93
2778 3151 6.797707 AGGTATTCCCGTATCAGTATAAGGA 58.202 40.000 0.00 0.00 38.97 3.36
2933 3307 0.545309 TGGCTAGAGACAGGGCACTT 60.545 55.000 0.00 0.00 0.00 3.16
3019 3393 1.918868 GACGCGGTTTAGCTTTGGGG 61.919 60.000 12.47 0.00 34.40 4.96
3083 3457 1.064832 GCCTTCTGCCATCTCTTCCTT 60.065 52.381 0.00 0.00 0.00 3.36
3086 3460 2.119801 TTGCCTTCTGCCATCTCTTC 57.880 50.000 0.00 0.00 40.16 2.87
3093 3467 3.696051 GAGATTACATTTGCCTTCTGCCA 59.304 43.478 0.00 0.00 40.16 4.92
3099 3473 7.667219 TCAAGAGAAAGAGATTACATTTGCCTT 59.333 33.333 0.00 0.00 0.00 4.35
3100 3474 7.170965 TCAAGAGAAAGAGATTACATTTGCCT 58.829 34.615 0.00 0.00 0.00 4.75
3145 3519 3.441290 CAGAGCCCTGCAAGCAGC 61.441 66.667 16.33 7.33 42.35 5.25
3184 3558 1.471676 GGATCGGTCTTGCATTCGTCT 60.472 52.381 0.00 0.00 0.00 4.18
3191 3565 0.248012 TTTAGCGGATCGGTCTTGCA 59.752 50.000 14.30 0.00 38.83 4.08
3193 3567 1.927174 CTGTTTAGCGGATCGGTCTTG 59.073 52.381 0.00 0.00 38.83 3.02
3202 3576 3.576982 TCTCTTTTCTCCTGTTTAGCGGA 59.423 43.478 0.00 0.00 0.00 5.54
3359 3737 5.646793 CACATGACTCACCTTTGATCTTGAT 59.353 40.000 0.00 0.00 0.00 2.57
3579 3978 3.815401 CAGTTCTGAACAAACTCGGGAAT 59.185 43.478 21.50 0.00 34.79 3.01
3621 4020 7.827236 CCTTCACCATATTGTAAACCTGAAGTA 59.173 37.037 0.00 0.00 34.20 2.24
3917 4389 2.490991 GGGTAGTATAAAAGGCCGCTG 58.509 52.381 0.00 0.00 0.00 5.18
3919 4391 1.419012 AGGGGTAGTATAAAAGGCCGC 59.581 52.381 0.00 0.00 0.00 6.53
3948 4420 7.031975 CCTAGAACTTTTCTTGCAAATGGATC 58.968 38.462 0.00 0.00 41.14 3.36
4020 4499 5.408880 TCCGTGGTGATAAACTGATACAA 57.591 39.130 0.00 0.00 0.00 2.41
4142 4989 5.420421 TGTCTGGAGACTCAATCCTAAAGAG 59.580 44.000 4.53 0.00 44.99 2.85
4161 5008 3.254060 CCGAAATGGTACTGTCTGTCTG 58.746 50.000 0.00 0.00 0.00 3.51
4244 5119 5.300752 ACTCTCAGTCAACATTAACACAGG 58.699 41.667 0.00 0.00 0.00 4.00
4286 5162 4.119862 CGGGTGAACATGTAATAGAGTGG 58.880 47.826 0.00 0.00 0.00 4.00
4325 5201 7.538575 AGCTTGATGTAATTTGGTGTATGTTC 58.461 34.615 0.00 0.00 0.00 3.18
4334 5210 6.038356 GTCCATGAAGCTTGATGTAATTTGG 58.962 40.000 22.06 8.85 0.00 3.28
4335 5211 6.038356 GGTCCATGAAGCTTGATGTAATTTG 58.962 40.000 22.06 7.95 0.00 2.32
4336 5212 5.716228 TGGTCCATGAAGCTTGATGTAATTT 59.284 36.000 22.06 0.00 0.00 1.82
4403 5279 0.904649 ATCTGGGAGCGATGACAACA 59.095 50.000 0.00 0.00 0.00 3.33
4418 5294 2.146342 GGCCATACATGTTCCGATCTG 58.854 52.381 2.30 0.00 0.00 2.90
4430 5306 3.431673 TGTCATCAACAAGGCCATACA 57.568 42.857 5.01 0.00 34.03 2.29
4451 5327 2.338984 GCACGACGACTTCCCTGT 59.661 61.111 0.00 0.00 0.00 4.00
4509 5385 2.567985 ACGATTCAAGGTTTCAACGGT 58.432 42.857 0.00 0.00 0.00 4.83
4534 5410 5.755375 TGGCGAGATTTGATATCAAGTTCTC 59.245 40.000 29.24 29.24 40.14 2.87
4555 5431 0.801872 TGTTATGTGTGCACGATGGC 59.198 50.000 13.13 5.14 0.00 4.40
4570 5446 4.146564 GGCAAGGTTAGGGTTTCTTGTTA 58.853 43.478 0.00 0.00 38.90 2.41
4571 5447 2.963101 GGCAAGGTTAGGGTTTCTTGTT 59.037 45.455 0.00 0.00 38.90 2.83
4572 5448 2.091555 TGGCAAGGTTAGGGTTTCTTGT 60.092 45.455 0.00 0.00 38.90 3.16
4573 5449 2.296190 GTGGCAAGGTTAGGGTTTCTTG 59.704 50.000 0.00 0.00 39.46 3.02
4574 5450 2.177016 AGTGGCAAGGTTAGGGTTTCTT 59.823 45.455 0.00 0.00 0.00 2.52
4589 5465 0.826715 GACAGCTCCTATGAGTGGCA 59.173 55.000 0.00 0.00 40.95 4.92
4593 5469 4.900652 AGATTCATGACAGCTCCTATGAGT 59.099 41.667 0.00 0.00 40.95 3.41
4598 5474 4.321527 CGCATAGATTCATGACAGCTCCTA 60.322 45.833 0.00 0.00 0.00 2.94
4605 5481 2.548707 GCTCCCGCATAGATTCATGACA 60.549 50.000 0.00 0.00 35.78 3.58
4606 5482 2.072298 GCTCCCGCATAGATTCATGAC 58.928 52.381 0.00 0.00 35.78 3.06
4607 5483 1.973515 AGCTCCCGCATAGATTCATGA 59.026 47.619 0.00 0.00 39.10 3.07
4667 5543 0.611714 TAGTTGGTCTTCCGGGCTTC 59.388 55.000 0.00 0.00 36.30 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.