Multiple sequence alignment - TraesCS7B01G295700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G295700 chr7B 100.000 3266 0 0 1 3266 532286506 532289771 0.000000e+00 6032.0
1 TraesCS7B01G295700 chr7B 94.990 499 24 1 1 498 694309521 694310019 0.000000e+00 782.0
2 TraesCS7B01G295700 chr7B 79.153 307 59 5 2962 3266 532468407 532468710 1.190000e-49 207.0
3 TraesCS7B01G295700 chr7B 84.348 115 15 3 720 833 658123836 658123724 3.450000e-20 110.0
4 TraesCS7B01G295700 chr7A 95.647 2366 88 7 906 3266 571934950 571937305 0.000000e+00 3784.0
5 TraesCS7B01G295700 chr7D 94.096 2439 103 25 856 3266 504249502 504251927 0.000000e+00 3668.0
6 TraesCS7B01G295700 chr7D 79.677 310 62 1 2957 3266 504544874 504545182 4.240000e-54 222.0
7 TraesCS7B01G295700 chr6B 93.214 501 31 3 3 501 103450108 103449609 0.000000e+00 734.0
8 TraesCS7B01G295700 chr6B 89.474 57 1 4 547 602 622748017 622747965 2.100000e-07 67.6
9 TraesCS7B01G295700 chr2B 92.325 456 30 4 4 458 196262315 196262766 0.000000e+00 643.0
10 TraesCS7B01G295700 chr2B 85.345 116 13 4 537 651 626890487 626890375 2.060000e-22 117.0
11 TraesCS7B01G295700 chr2B 84.348 115 16 2 720 833 48806823 48806710 9.580000e-21 111.0
12 TraesCS7B01G295700 chr2B 81.102 127 22 2 708 833 733861298 733861423 2.070000e-17 100.0
13 TraesCS7B01G295700 chr2B 78.448 116 18 6 538 651 581453326 581453436 5.850000e-08 69.4
14 TraesCS7B01G295700 chr4D 87.826 115 12 2 720 833 19674085 19673972 2.040000e-27 134.0
15 TraesCS7B01G295700 chr2D 87.179 117 13 2 536 652 72427491 72427377 7.350000e-27 132.0
16 TraesCS7B01G295700 chr6D 75.542 323 42 26 17 321 429048755 429048452 1.230000e-24 124.0
17 TraesCS7B01G295700 chr1D 84.252 127 18 2 708 833 463031424 463031549 4.430000e-24 122.0
18 TraesCS7B01G295700 chr6A 82.677 127 20 2 708 833 162250772 162250647 9.580000e-21 111.0
19 TraesCS7B01G295700 chr4B 84.348 115 16 2 720 833 88093885 88093772 9.580000e-21 111.0
20 TraesCS7B01G295700 chr4B 82.609 115 18 2 720 833 538841419 538841532 2.070000e-17 100.0
21 TraesCS7B01G295700 chr4B 83.178 107 16 2 728 833 91121010 91120905 2.680000e-16 97.1
22 TraesCS7B01G295700 chr4B 78.862 123 16 8 536 652 510833633 510833515 1.260000e-09 75.0
23 TraesCS7B01G295700 chr4A 80.992 121 16 6 536 652 724729842 724729725 4.490000e-14 89.8
24 TraesCS7B01G295700 chr3B 79.675 123 14 9 536 652 681754116 681753999 9.720000e-11 78.7
25 TraesCS7B01G295700 chrUn 89.474 57 2 3 547 602 87715850 87715903 5.850000e-08 69.4
26 TraesCS7B01G295700 chrUn 89.474 57 2 3 547 602 283890970 283890917 5.850000e-08 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G295700 chr7B 532286506 532289771 3265 False 6032 6032 100.000 1 3266 1 chr7B.!!$F1 3265
1 TraesCS7B01G295700 chr7A 571934950 571937305 2355 False 3784 3784 95.647 906 3266 1 chr7A.!!$F1 2360
2 TraesCS7B01G295700 chr7D 504249502 504251927 2425 False 3668 3668 94.096 856 3266 1 chr7D.!!$F1 2410

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
796 797 0.033405 TTTGGGGGTTCGTTTCACCA 60.033 50.0 0.0 0.0 35.8 4.17 F
798 799 0.033405 TGGGGGTTCGTTTCACCAAA 60.033 50.0 0.0 0.0 35.8 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1773 1776 0.175760 GCATGGACGAGAAGTGCCTA 59.824 55.0 0.0 0.0 40.82 3.93 R
2291 2294 0.247736 GAACATCTCCGACCAGCAGT 59.752 55.0 0.0 0.0 0.00 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
97 98 9.835389 ATTCAATGAACTTTTTCTCAAAATCCA 57.165 25.926 0.00 0.00 31.28 3.41
98 99 9.835389 TTCAATGAACTTTTTCTCAAAATCCAT 57.165 25.926 0.00 0.00 31.28 3.41
99 100 9.263538 TCAATGAACTTTTTCTCAAAATCCATG 57.736 29.630 0.00 0.00 31.28 3.66
100 101 9.263538 CAATGAACTTTTTCTCAAAATCCATGA 57.736 29.630 0.00 0.00 31.28 3.07
101 102 9.835389 AATGAACTTTTTCTCAAAATCCATGAA 57.165 25.926 0.00 0.00 31.28 2.57
102 103 8.647143 TGAACTTTTTCTCAAAATCCATGAAC 57.353 30.769 0.00 0.00 31.28 3.18
103 104 8.477256 TGAACTTTTTCTCAAAATCCATGAACT 58.523 29.630 0.00 0.00 31.28 3.01
104 105 9.317936 GAACTTTTTCTCAAAATCCATGAACTT 57.682 29.630 0.00 0.00 31.28 2.66
105 106 9.671279 AACTTTTTCTCAAAATCCATGAACTTT 57.329 25.926 0.00 0.00 31.28 2.66
106 107 9.671279 ACTTTTTCTCAAAATCCATGAACTTTT 57.329 25.926 0.00 0.00 31.28 2.27
152 153 9.579768 TTTTTGAATTCGATGAACTTTTCTTCA 57.420 25.926 0.04 0.00 34.51 3.02
153 154 8.786937 TTTGAATTCGATGAACTTTTCTTCAG 57.213 30.769 0.04 0.00 33.65 3.02
154 155 7.728847 TGAATTCGATGAACTTTTCTTCAGA 57.271 32.000 0.04 0.18 33.65 3.27
155 156 8.153479 TGAATTCGATGAACTTTTCTTCAGAA 57.847 30.769 0.04 6.91 33.65 3.02
156 157 8.620416 TGAATTCGATGAACTTTTCTTCAGAAA 58.380 29.630 0.04 0.00 41.77 2.52
157 158 8.788409 AATTCGATGAACTTTTCTTCAGAAAC 57.212 30.769 1.28 0.00 43.01 2.78
158 159 6.918892 TCGATGAACTTTTCTTCAGAAACA 57.081 33.333 1.28 0.00 43.01 2.83
159 160 6.948353 TCGATGAACTTTTCTTCAGAAACAG 58.052 36.000 1.28 5.92 43.01 3.16
160 161 6.538742 TCGATGAACTTTTCTTCAGAAACAGT 59.461 34.615 1.28 6.45 43.01 3.55
161 162 6.630443 CGATGAACTTTTCTTCAGAAACAGTG 59.370 38.462 1.28 0.00 43.01 3.66
162 163 7.465916 CGATGAACTTTTCTTCAGAAACAGTGA 60.466 37.037 0.00 2.13 43.01 3.41
163 164 7.447374 TGAACTTTTCTTCAGAAACAGTGAA 57.553 32.000 0.00 0.00 43.01 3.18
164 165 7.305474 TGAACTTTTCTTCAGAAACAGTGAAC 58.695 34.615 0.00 5.98 43.01 3.18
165 166 7.174946 TGAACTTTTCTTCAGAAACAGTGAACT 59.825 33.333 0.00 0.00 43.01 3.01
166 167 7.454260 ACTTTTCTTCAGAAACAGTGAACTT 57.546 32.000 0.00 0.00 43.01 2.66
167 168 7.886338 ACTTTTCTTCAGAAACAGTGAACTTT 58.114 30.769 0.00 0.00 43.01 2.66
168 169 8.360390 ACTTTTCTTCAGAAACAGTGAACTTTT 58.640 29.630 0.00 0.00 43.01 2.27
169 170 9.196552 CTTTTCTTCAGAAACAGTGAACTTTTT 57.803 29.630 0.00 0.00 43.01 1.94
233 234 9.526713 TTTTTCGAAATTGATGATCTTTGTTCA 57.473 25.926 12.12 0.00 0.00 3.18
234 235 9.695526 TTTTCGAAATTGATGATCTTTGTTCAT 57.304 25.926 12.12 0.00 36.54 2.57
235 236 9.695526 TTTCGAAATTGATGATCTTTGTTCATT 57.304 25.926 6.47 0.00 34.03 2.57
236 237 9.695526 TTCGAAATTGATGATCTTTGTTCATTT 57.304 25.926 0.00 0.00 34.03 2.32
237 238 9.695526 TCGAAATTGATGATCTTTGTTCATTTT 57.304 25.926 0.00 0.00 34.03 1.82
242 243 7.856492 TGATGATCTTTGTTCATTTTTCACG 57.144 32.000 0.00 0.00 34.03 4.35
243 244 7.647228 TGATGATCTTTGTTCATTTTTCACGA 58.353 30.769 0.00 0.00 34.03 4.35
244 245 8.134261 TGATGATCTTTGTTCATTTTTCACGAA 58.866 29.630 0.00 0.00 34.03 3.85
245 246 7.678194 TGATCTTTGTTCATTTTTCACGAAC 57.322 32.000 0.00 0.00 39.56 3.95
246 247 6.695278 TGATCTTTGTTCATTTTTCACGAACC 59.305 34.615 0.00 0.00 38.59 3.62
247 248 6.202516 TCTTTGTTCATTTTTCACGAACCT 57.797 33.333 0.00 0.00 38.59 3.50
248 249 6.626302 TCTTTGTTCATTTTTCACGAACCTT 58.374 32.000 0.00 0.00 38.59 3.50
249 250 7.093992 TCTTTGTTCATTTTTCACGAACCTTT 58.906 30.769 0.00 0.00 38.59 3.11
250 251 7.600752 TCTTTGTTCATTTTTCACGAACCTTTT 59.399 29.630 0.00 0.00 38.59 2.27
251 252 7.659652 TTGTTCATTTTTCACGAACCTTTTT 57.340 28.000 0.00 0.00 38.59 1.94
339 340 7.757242 ATCTCTAGAGGAAGGGTTAAATGTT 57.243 36.000 19.67 0.00 0.00 2.71
340 341 7.184067 TCTCTAGAGGAAGGGTTAAATGTTC 57.816 40.000 19.67 0.00 0.00 3.18
341 342 6.156429 TCTCTAGAGGAAGGGTTAAATGTTCC 59.844 42.308 19.67 3.71 39.08 3.62
344 345 3.951663 AGGAAGGGTTAAATGTTCCTCG 58.048 45.455 7.41 0.00 44.57 4.63
345 346 3.329814 AGGAAGGGTTAAATGTTCCTCGT 59.670 43.478 7.41 0.00 44.57 4.18
346 347 4.077108 GGAAGGGTTAAATGTTCCTCGTT 58.923 43.478 4.45 0.00 36.34 3.85
347 348 4.521639 GGAAGGGTTAAATGTTCCTCGTTT 59.478 41.667 4.45 0.00 36.34 3.60
348 349 5.335426 GGAAGGGTTAAATGTTCCTCGTTTC 60.335 44.000 4.45 0.00 36.34 2.78
349 350 4.981812 AGGGTTAAATGTTCCTCGTTTCT 58.018 39.130 0.00 0.00 36.72 2.52
350 351 6.117975 AGGGTTAAATGTTCCTCGTTTCTA 57.882 37.500 0.00 0.00 36.72 2.10
351 352 6.536447 AGGGTTAAATGTTCCTCGTTTCTAA 58.464 36.000 0.00 0.00 36.72 2.10
352 353 7.173032 AGGGTTAAATGTTCCTCGTTTCTAAT 58.827 34.615 0.00 0.00 36.72 1.73
353 354 8.323567 AGGGTTAAATGTTCCTCGTTTCTAATA 58.676 33.333 0.00 0.00 36.72 0.98
354 355 8.610035 GGGTTAAATGTTCCTCGTTTCTAATAG 58.390 37.037 0.00 0.00 36.72 1.73
355 356 9.159364 GGTTAAATGTTCCTCGTTTCTAATAGT 57.841 33.333 0.00 0.00 36.72 2.12
359 360 9.583765 AAATGTTCCTCGTTTCTAATAGTAGAC 57.416 33.333 0.00 0.00 36.03 2.59
360 361 7.692460 TGTTCCTCGTTTCTAATAGTAGACA 57.308 36.000 0.00 0.00 36.03 3.41
361 362 8.114331 TGTTCCTCGTTTCTAATAGTAGACAA 57.886 34.615 0.00 0.00 36.03 3.18
362 363 8.242053 TGTTCCTCGTTTCTAATAGTAGACAAG 58.758 37.037 0.00 0.00 36.03 3.16
363 364 6.793349 TCCTCGTTTCTAATAGTAGACAAGC 58.207 40.000 0.00 0.00 36.03 4.01
364 365 6.602406 TCCTCGTTTCTAATAGTAGACAAGCT 59.398 38.462 0.00 0.00 36.03 3.74
365 366 7.122353 TCCTCGTTTCTAATAGTAGACAAGCTT 59.878 37.037 0.00 0.00 36.03 3.74
366 367 7.221067 CCTCGTTTCTAATAGTAGACAAGCTTG 59.779 40.741 24.84 24.84 36.03 4.01
367 368 7.033791 TCGTTTCTAATAGTAGACAAGCTTGG 58.966 38.462 29.18 12.28 36.03 3.61
368 369 6.237861 CGTTTCTAATAGTAGACAAGCTTGGC 60.238 42.308 29.18 27.49 36.03 4.52
369 370 5.277857 TCTAATAGTAGACAAGCTTGGCC 57.722 43.478 28.83 19.25 36.67 5.36
370 371 2.604046 ATAGTAGACAAGCTTGGCCG 57.396 50.000 28.83 4.12 36.67 6.13
371 372 0.108329 TAGTAGACAAGCTTGGCCGC 60.108 55.000 28.83 20.63 36.67 6.53
372 373 1.376037 GTAGACAAGCTTGGCCGCT 60.376 57.895 28.83 20.37 43.31 5.52
378 379 3.958860 AGCTTGGCCGCTTGGTCT 61.959 61.111 0.00 0.00 38.57 3.85
379 380 3.741476 GCTTGGCCGCTTGGTCTG 61.741 66.667 0.00 0.00 38.57 3.51
380 381 3.058160 CTTGGCCGCTTGGTCTGG 61.058 66.667 0.00 0.00 38.57 3.86
381 382 4.659172 TTGGCCGCTTGGTCTGGG 62.659 66.667 0.00 0.00 38.57 4.45
385 386 3.966543 CCGCTTGGTCTGGGGGTT 61.967 66.667 0.00 0.00 34.39 4.11
386 387 2.359975 CGCTTGGTCTGGGGGTTC 60.360 66.667 0.00 0.00 0.00 3.62
387 388 2.359975 GCTTGGTCTGGGGGTTCG 60.360 66.667 0.00 0.00 0.00 3.95
388 389 2.351276 CTTGGTCTGGGGGTTCGG 59.649 66.667 0.00 0.00 0.00 4.30
389 390 3.253838 TTGGTCTGGGGGTTCGGG 61.254 66.667 0.00 0.00 0.00 5.14
390 391 4.585216 TGGTCTGGGGGTTCGGGT 62.585 66.667 0.00 0.00 0.00 5.28
391 392 4.029809 GGTCTGGGGGTTCGGGTG 62.030 72.222 0.00 0.00 0.00 4.61
392 393 3.246880 GTCTGGGGGTTCGGGTGT 61.247 66.667 0.00 0.00 0.00 4.16
393 394 2.448931 TCTGGGGGTTCGGGTGTT 60.449 61.111 0.00 0.00 0.00 3.32
394 395 1.152074 TCTGGGGGTTCGGGTGTTA 60.152 57.895 0.00 0.00 0.00 2.41
395 396 1.002990 CTGGGGGTTCGGGTGTTAC 60.003 63.158 0.00 0.00 0.00 2.50
396 397 2.046988 GGGGGTTCGGGTGTTACG 60.047 66.667 0.00 0.00 0.00 3.18
397 398 2.743060 GGGGTTCGGGTGTTACGT 59.257 61.111 0.00 0.00 0.00 3.57
398 399 1.071299 GGGGTTCGGGTGTTACGTT 59.929 57.895 0.00 0.00 0.00 3.99
399 400 0.534877 GGGGTTCGGGTGTTACGTTT 60.535 55.000 0.00 0.00 0.00 3.60
400 401 0.867746 GGGTTCGGGTGTTACGTTTC 59.132 55.000 0.00 0.00 0.00 2.78
401 402 1.541015 GGGTTCGGGTGTTACGTTTCT 60.541 52.381 0.00 0.00 0.00 2.52
402 403 1.794701 GGTTCGGGTGTTACGTTTCTC 59.205 52.381 0.00 0.00 0.00 2.87
403 404 2.546584 GGTTCGGGTGTTACGTTTCTCT 60.547 50.000 0.00 0.00 0.00 3.10
404 405 3.126073 GTTCGGGTGTTACGTTTCTCTT 58.874 45.455 0.00 0.00 0.00 2.85
405 406 3.017265 TCGGGTGTTACGTTTCTCTTC 57.983 47.619 0.00 0.00 0.00 2.87
406 407 2.064014 CGGGTGTTACGTTTCTCTTCC 58.936 52.381 0.00 0.00 0.00 3.46
407 408 2.288640 CGGGTGTTACGTTTCTCTTCCT 60.289 50.000 0.00 0.00 0.00 3.36
408 409 3.736720 GGGTGTTACGTTTCTCTTCCTT 58.263 45.455 0.00 0.00 0.00 3.36
409 410 4.559300 CGGGTGTTACGTTTCTCTTCCTTA 60.559 45.833 0.00 0.00 0.00 2.69
410 411 4.928020 GGGTGTTACGTTTCTCTTCCTTAG 59.072 45.833 0.00 0.00 0.00 2.18
411 412 5.279156 GGGTGTTACGTTTCTCTTCCTTAGA 60.279 44.000 0.00 0.00 0.00 2.10
412 413 5.632764 GGTGTTACGTTTCTCTTCCTTAGAC 59.367 44.000 0.00 0.00 0.00 2.59
413 414 6.211515 GTGTTACGTTTCTCTTCCTTAGACA 58.788 40.000 0.00 0.00 0.00 3.41
414 415 6.362820 GTGTTACGTTTCTCTTCCTTAGACAG 59.637 42.308 0.00 0.00 0.00 3.51
415 416 6.040166 TGTTACGTTTCTCTTCCTTAGACAGT 59.960 38.462 0.00 0.00 0.00 3.55
416 417 4.872664 ACGTTTCTCTTCCTTAGACAGTG 58.127 43.478 0.00 0.00 0.00 3.66
417 418 4.238514 CGTTTCTCTTCCTTAGACAGTGG 58.761 47.826 0.00 0.00 0.00 4.00
418 419 4.570930 GTTTCTCTTCCTTAGACAGTGGG 58.429 47.826 0.00 0.00 0.00 4.61
419 420 3.544698 TCTCTTCCTTAGACAGTGGGT 57.455 47.619 0.00 0.00 0.00 4.51
420 421 3.858135 TCTCTTCCTTAGACAGTGGGTT 58.142 45.455 0.00 0.00 0.00 4.11
421 422 3.833070 TCTCTTCCTTAGACAGTGGGTTC 59.167 47.826 0.00 0.00 0.00 3.62
422 423 2.561419 TCTTCCTTAGACAGTGGGTTCG 59.439 50.000 0.00 0.00 0.00 3.95
423 424 2.297698 TCCTTAGACAGTGGGTTCGA 57.702 50.000 0.00 0.00 0.00 3.71
424 425 2.168496 TCCTTAGACAGTGGGTTCGAG 58.832 52.381 0.00 0.00 0.00 4.04
425 426 1.893801 CCTTAGACAGTGGGTTCGAGT 59.106 52.381 0.00 0.00 0.00 4.18
426 427 2.094649 CCTTAGACAGTGGGTTCGAGTC 60.095 54.545 0.00 0.00 0.00 3.36
427 428 2.581216 TAGACAGTGGGTTCGAGTCT 57.419 50.000 6.49 6.49 41.88 3.24
428 429 1.249407 AGACAGTGGGTTCGAGTCTC 58.751 55.000 0.00 0.00 34.71 3.36
429 430 0.959553 GACAGTGGGTTCGAGTCTCA 59.040 55.000 0.00 0.00 0.00 3.27
430 431 0.962489 ACAGTGGGTTCGAGTCTCAG 59.038 55.000 0.00 0.00 0.00 3.35
431 432 0.962489 CAGTGGGTTCGAGTCTCAGT 59.038 55.000 0.00 0.00 0.00 3.41
432 433 1.341531 CAGTGGGTTCGAGTCTCAGTT 59.658 52.381 0.00 0.00 0.00 3.16
433 434 2.040178 AGTGGGTTCGAGTCTCAGTTT 58.960 47.619 0.00 0.00 0.00 2.66
434 435 2.434702 AGTGGGTTCGAGTCTCAGTTTT 59.565 45.455 0.00 0.00 0.00 2.43
435 436 3.118371 AGTGGGTTCGAGTCTCAGTTTTT 60.118 43.478 0.00 0.00 0.00 1.94
436 437 3.002348 GTGGGTTCGAGTCTCAGTTTTTG 59.998 47.826 0.00 0.00 0.00 2.44
437 438 2.031944 GGGTTCGAGTCTCAGTTTTTGC 60.032 50.000 0.00 0.00 0.00 3.68
438 439 2.612212 GGTTCGAGTCTCAGTTTTTGCA 59.388 45.455 0.00 0.00 0.00 4.08
439 440 3.251004 GGTTCGAGTCTCAGTTTTTGCAT 59.749 43.478 0.00 0.00 0.00 3.96
440 441 4.214437 GTTCGAGTCTCAGTTTTTGCATG 58.786 43.478 0.00 0.00 0.00 4.06
441 442 3.466836 TCGAGTCTCAGTTTTTGCATGT 58.533 40.909 0.00 0.00 0.00 3.21
442 443 3.876914 TCGAGTCTCAGTTTTTGCATGTT 59.123 39.130 0.00 0.00 0.00 2.71
443 444 5.053811 TCGAGTCTCAGTTTTTGCATGTTA 58.946 37.500 0.00 0.00 0.00 2.41
444 445 5.050363 TCGAGTCTCAGTTTTTGCATGTTAC 60.050 40.000 0.00 0.00 0.00 2.50
445 446 5.277297 CGAGTCTCAGTTTTTGCATGTTACA 60.277 40.000 0.00 0.00 0.00 2.41
446 447 6.566564 CGAGTCTCAGTTTTTGCATGTTACAT 60.567 38.462 0.00 0.00 0.00 2.29
447 448 6.672147 AGTCTCAGTTTTTGCATGTTACATC 58.328 36.000 0.00 0.00 0.00 3.06
448 449 6.262944 AGTCTCAGTTTTTGCATGTTACATCA 59.737 34.615 0.00 0.00 0.00 3.07
449 450 6.580041 GTCTCAGTTTTTGCATGTTACATCAG 59.420 38.462 0.00 0.00 0.00 2.90
450 451 6.262944 TCTCAGTTTTTGCATGTTACATCAGT 59.737 34.615 0.00 0.00 0.00 3.41
451 452 7.443879 TCTCAGTTTTTGCATGTTACATCAGTA 59.556 33.333 0.00 0.00 0.00 2.74
452 453 7.584108 TCAGTTTTTGCATGTTACATCAGTAG 58.416 34.615 0.00 0.00 0.00 2.57
453 454 6.803320 CAGTTTTTGCATGTTACATCAGTAGG 59.197 38.462 0.00 0.00 0.00 3.18
454 455 6.490040 AGTTTTTGCATGTTACATCAGTAGGT 59.510 34.615 0.00 0.00 0.00 3.08
455 456 6.892658 TTTTGCATGTTACATCAGTAGGTT 57.107 33.333 0.00 0.00 0.00 3.50
456 457 6.892658 TTTGCATGTTACATCAGTAGGTTT 57.107 33.333 0.00 0.00 0.00 3.27
457 458 6.892658 TTGCATGTTACATCAGTAGGTTTT 57.107 33.333 0.00 0.00 0.00 2.43
458 459 6.892658 TGCATGTTACATCAGTAGGTTTTT 57.107 33.333 0.00 0.00 0.00 1.94
486 487 0.972883 TTTTTCCTTGATTGGGCCGG 59.027 50.000 0.00 0.00 0.00 6.13
487 488 1.540435 TTTTCCTTGATTGGGCCGGC 61.540 55.000 21.18 21.18 0.00 6.13
488 489 3.955543 TTCCTTGATTGGGCCGGCC 62.956 63.158 38.57 38.57 0.00 6.13
502 503 3.524606 GGCCCGCTAGCTCACGTA 61.525 66.667 13.93 0.00 0.00 3.57
503 504 2.728817 GCCCGCTAGCTCACGTAT 59.271 61.111 13.93 0.00 0.00 3.06
504 505 1.067582 GCCCGCTAGCTCACGTATT 59.932 57.895 13.93 0.00 0.00 1.89
505 506 0.529992 GCCCGCTAGCTCACGTATTT 60.530 55.000 13.93 0.00 0.00 1.40
506 507 1.935933 CCCGCTAGCTCACGTATTTT 58.064 50.000 13.93 0.00 0.00 1.82
507 508 1.593006 CCCGCTAGCTCACGTATTTTG 59.407 52.381 13.93 0.00 0.00 2.44
508 509 1.004927 CCGCTAGCTCACGTATTTTGC 60.005 52.381 13.93 0.00 0.00 3.68
509 510 1.658596 CGCTAGCTCACGTATTTTGCA 59.341 47.619 13.93 0.00 0.00 4.08
510 511 2.285256 CGCTAGCTCACGTATTTTGCAG 60.285 50.000 13.93 0.00 0.00 4.41
511 512 2.537730 GCTAGCTCACGTATTTTGCAGC 60.538 50.000 7.70 0.00 0.00 5.25
512 513 0.443869 AGCTCACGTATTTTGCAGCG 59.556 50.000 0.00 0.00 31.93 5.18
513 514 1.128147 GCTCACGTATTTTGCAGCGC 61.128 55.000 0.00 0.00 0.00 5.92
514 515 0.521242 CTCACGTATTTTGCAGCGCC 60.521 55.000 2.29 0.00 0.00 6.53
515 516 1.863012 CACGTATTTTGCAGCGCCG 60.863 57.895 2.29 0.00 0.00 6.46
516 517 2.030401 ACGTATTTTGCAGCGCCGA 61.030 52.632 2.29 0.00 0.00 5.54
517 518 1.580132 CGTATTTTGCAGCGCCGAC 60.580 57.895 2.29 0.00 0.00 4.79
518 519 1.794222 GTATTTTGCAGCGCCGACT 59.206 52.632 2.29 0.00 0.00 4.18
519 520 1.003851 GTATTTTGCAGCGCCGACTA 58.996 50.000 2.29 0.00 0.00 2.59
520 521 1.395608 GTATTTTGCAGCGCCGACTAA 59.604 47.619 2.29 0.00 0.00 2.24
521 522 0.447801 ATTTTGCAGCGCCGACTAAG 59.552 50.000 2.29 0.00 0.00 2.18
522 523 0.601576 TTTTGCAGCGCCGACTAAGA 60.602 50.000 2.29 0.00 0.00 2.10
523 524 0.601576 TTTGCAGCGCCGACTAAGAA 60.602 50.000 2.29 0.00 0.00 2.52
524 525 1.014044 TTGCAGCGCCGACTAAGAAG 61.014 55.000 2.29 0.00 0.00 2.85
525 526 1.153823 GCAGCGCCGACTAAGAAGA 60.154 57.895 2.29 0.00 0.00 2.87
526 527 1.142778 GCAGCGCCGACTAAGAAGAG 61.143 60.000 2.29 0.00 0.00 2.85
527 528 1.139947 AGCGCCGACTAAGAAGAGC 59.860 57.895 2.29 0.00 0.00 4.09
528 529 1.139947 GCGCCGACTAAGAAGAGCT 59.860 57.895 0.00 0.00 0.00 4.09
529 530 0.868177 GCGCCGACTAAGAAGAGCTC 60.868 60.000 5.27 5.27 0.00 4.09
530 531 0.248702 CGCCGACTAAGAAGAGCTCC 60.249 60.000 10.93 0.00 0.00 4.70
531 532 0.103390 GCCGACTAAGAAGAGCTCCC 59.897 60.000 10.93 2.49 0.00 4.30
532 533 1.475403 CCGACTAAGAAGAGCTCCCA 58.525 55.000 10.93 0.00 0.00 4.37
533 534 2.035632 CCGACTAAGAAGAGCTCCCAT 58.964 52.381 10.93 0.00 0.00 4.00
534 535 2.223923 CCGACTAAGAAGAGCTCCCATG 60.224 54.545 10.93 0.00 0.00 3.66
535 536 2.690497 CGACTAAGAAGAGCTCCCATGA 59.310 50.000 10.93 0.00 0.00 3.07
536 537 3.131223 CGACTAAGAAGAGCTCCCATGAA 59.869 47.826 10.93 0.00 0.00 2.57
537 538 4.382040 CGACTAAGAAGAGCTCCCATGAAA 60.382 45.833 10.93 0.00 0.00 2.69
538 539 5.491982 GACTAAGAAGAGCTCCCATGAAAA 58.508 41.667 10.93 0.00 0.00 2.29
539 540 5.880901 ACTAAGAAGAGCTCCCATGAAAAA 58.119 37.500 10.93 0.00 0.00 1.94
574 575 9.672086 TTTAACAGACAAAAAGAATACGAATGG 57.328 29.630 0.00 0.00 0.00 3.16
575 576 6.254281 ACAGACAAAAAGAATACGAATGGG 57.746 37.500 0.00 0.00 0.00 4.00
576 577 5.095490 CAGACAAAAAGAATACGAATGGGC 58.905 41.667 0.00 0.00 0.00 5.36
577 578 5.010282 AGACAAAAAGAATACGAATGGGCT 58.990 37.500 0.00 0.00 0.00 5.19
578 579 5.059404 ACAAAAAGAATACGAATGGGCTG 57.941 39.130 0.00 0.00 0.00 4.85
579 580 4.082245 ACAAAAAGAATACGAATGGGCTGG 60.082 41.667 0.00 0.00 0.00 4.85
580 581 1.680338 AAGAATACGAATGGGCTGGC 58.320 50.000 0.00 0.00 0.00 4.85
581 582 0.179018 AGAATACGAATGGGCTGGCC 60.179 55.000 14.23 14.23 0.00 5.36
613 614 4.735132 GGGTGCGCGCTGTAGTCA 62.735 66.667 33.29 6.82 0.00 3.41
614 615 3.181967 GGTGCGCGCTGTAGTCAG 61.182 66.667 33.29 0.00 43.87 3.51
632 633 2.175236 GCACTACTGCTTCTTGGCC 58.825 57.895 0.00 0.00 40.63 5.36
633 634 1.308783 GCACTACTGCTTCTTGGCCC 61.309 60.000 0.00 0.00 40.63 5.80
634 635 0.036732 CACTACTGCTTCTTGGCCCA 59.963 55.000 0.00 0.00 0.00 5.36
635 636 0.036875 ACTACTGCTTCTTGGCCCAC 59.963 55.000 0.00 0.00 0.00 4.61
636 637 0.678048 CTACTGCTTCTTGGCCCACC 60.678 60.000 0.00 0.00 0.00 4.61
647 648 4.329545 GCCCACCAGCCAGACGAA 62.330 66.667 0.00 0.00 0.00 3.85
648 649 2.671070 CCCACCAGCCAGACGAAT 59.329 61.111 0.00 0.00 0.00 3.34
649 650 1.450312 CCCACCAGCCAGACGAATC 60.450 63.158 0.00 0.00 0.00 2.52
650 651 1.450312 CCACCAGCCAGACGAATCC 60.450 63.158 0.00 0.00 0.00 3.01
651 652 1.450312 CACCAGCCAGACGAATCCC 60.450 63.158 0.00 0.00 0.00 3.85
652 653 1.918293 ACCAGCCAGACGAATCCCA 60.918 57.895 0.00 0.00 0.00 4.37
653 654 1.450312 CCAGCCAGACGAATCCCAC 60.450 63.158 0.00 0.00 0.00 4.61
654 655 1.450312 CAGCCAGACGAATCCCACC 60.450 63.158 0.00 0.00 0.00 4.61
655 656 1.918293 AGCCAGACGAATCCCACCA 60.918 57.895 0.00 0.00 0.00 4.17
656 657 1.224592 GCCAGACGAATCCCACCAT 59.775 57.895 0.00 0.00 0.00 3.55
657 658 0.468226 GCCAGACGAATCCCACCATA 59.532 55.000 0.00 0.00 0.00 2.74
658 659 1.072331 GCCAGACGAATCCCACCATAT 59.928 52.381 0.00 0.00 0.00 1.78
659 660 2.301870 GCCAGACGAATCCCACCATATA 59.698 50.000 0.00 0.00 0.00 0.86
660 661 3.244422 GCCAGACGAATCCCACCATATAA 60.244 47.826 0.00 0.00 0.00 0.98
661 662 4.569943 CCAGACGAATCCCACCATATAAG 58.430 47.826 0.00 0.00 0.00 1.73
662 663 3.997021 CAGACGAATCCCACCATATAAGC 59.003 47.826 0.00 0.00 0.00 3.09
663 664 3.904339 AGACGAATCCCACCATATAAGCT 59.096 43.478 0.00 0.00 0.00 3.74
664 665 4.348168 AGACGAATCCCACCATATAAGCTT 59.652 41.667 3.48 3.48 0.00 3.74
665 666 5.048846 ACGAATCCCACCATATAAGCTTT 57.951 39.130 3.20 0.00 0.00 3.51
666 667 5.445964 ACGAATCCCACCATATAAGCTTTT 58.554 37.500 3.20 0.00 0.00 2.27
667 668 5.891551 ACGAATCCCACCATATAAGCTTTTT 59.108 36.000 3.20 0.00 0.00 1.94
720 721 3.717400 TTTATGCTTCAAACAACGCCA 57.283 38.095 0.00 0.00 0.00 5.69
721 722 2.987413 TATGCTTCAAACAACGCCAG 57.013 45.000 0.00 0.00 0.00 4.85
722 723 1.317613 ATGCTTCAAACAACGCCAGA 58.682 45.000 0.00 0.00 0.00 3.86
723 724 0.662619 TGCTTCAAACAACGCCAGAG 59.337 50.000 0.00 0.00 0.00 3.35
724 725 0.663153 GCTTCAAACAACGCCAGAGT 59.337 50.000 0.00 0.00 0.00 3.24
725 726 1.065551 GCTTCAAACAACGCCAGAGTT 59.934 47.619 0.00 0.00 34.15 3.01
726 727 2.479560 GCTTCAAACAACGCCAGAGTTT 60.480 45.455 0.00 0.00 36.00 2.66
731 732 4.385358 AAACAACGCCAGAGTTTGATTT 57.615 36.364 0.00 0.00 34.47 2.17
732 733 5.508200 AAACAACGCCAGAGTTTGATTTA 57.492 34.783 0.00 0.00 34.47 1.40
733 734 4.749245 ACAACGCCAGAGTTTGATTTAG 57.251 40.909 0.00 0.00 30.96 1.85
734 735 4.385825 ACAACGCCAGAGTTTGATTTAGA 58.614 39.130 0.00 0.00 30.96 2.10
735 736 4.213482 ACAACGCCAGAGTTTGATTTAGAC 59.787 41.667 0.00 0.00 30.96 2.59
736 737 4.273148 ACGCCAGAGTTTGATTTAGACT 57.727 40.909 0.00 0.00 0.00 3.24
737 738 3.997021 ACGCCAGAGTTTGATTTAGACTG 59.003 43.478 0.00 0.00 0.00 3.51
738 739 4.245660 CGCCAGAGTTTGATTTAGACTGA 58.754 43.478 0.00 0.00 0.00 3.41
739 740 4.690748 CGCCAGAGTTTGATTTAGACTGAA 59.309 41.667 0.00 0.00 0.00 3.02
740 741 5.179368 CGCCAGAGTTTGATTTAGACTGAAA 59.821 40.000 0.00 0.00 0.00 2.69
741 742 6.128172 CGCCAGAGTTTGATTTAGACTGAAAT 60.128 38.462 0.00 0.00 0.00 2.17
742 743 7.573843 CGCCAGAGTTTGATTTAGACTGAAATT 60.574 37.037 0.00 0.00 0.00 1.82
743 744 7.540055 GCCAGAGTTTGATTTAGACTGAAATTG 59.460 37.037 0.00 0.00 0.00 2.32
744 745 7.540055 CCAGAGTTTGATTTAGACTGAAATTGC 59.460 37.037 0.00 0.00 0.00 3.56
745 746 8.077991 CAGAGTTTGATTTAGACTGAAATTGCA 58.922 33.333 0.00 0.00 0.00 4.08
746 747 8.800332 AGAGTTTGATTTAGACTGAAATTGCAT 58.200 29.630 0.00 0.00 0.00 3.96
749 750 9.846248 GTTTGATTTAGACTGAAATTGCATAGT 57.154 29.630 0.00 0.00 0.00 2.12
755 756 8.506168 TTAGACTGAAATTGCATAGTTTAGGG 57.494 34.615 0.00 0.00 0.00 3.53
756 757 5.888161 AGACTGAAATTGCATAGTTTAGGGG 59.112 40.000 0.00 0.00 0.00 4.79
757 758 5.580022 ACTGAAATTGCATAGTTTAGGGGT 58.420 37.500 0.00 0.00 0.00 4.95
758 759 5.418840 ACTGAAATTGCATAGTTTAGGGGTG 59.581 40.000 0.00 0.00 0.00 4.61
759 760 4.159506 TGAAATTGCATAGTTTAGGGGTGC 59.840 41.667 0.00 0.00 36.39 5.01
760 761 2.889170 TTGCATAGTTTAGGGGTGCA 57.111 45.000 0.00 0.00 43.33 4.57
761 762 2.889170 TGCATAGTTTAGGGGTGCAA 57.111 45.000 0.00 0.00 42.22 4.08
762 763 2.442413 TGCATAGTTTAGGGGTGCAAC 58.558 47.619 0.00 0.00 42.22 4.17
763 764 2.041081 TGCATAGTTTAGGGGTGCAACT 59.959 45.455 0.00 0.00 42.22 3.16
764 765 2.423538 GCATAGTTTAGGGGTGCAACTG 59.576 50.000 0.00 0.00 36.74 3.16
765 766 3.872240 GCATAGTTTAGGGGTGCAACTGA 60.872 47.826 0.00 0.00 36.74 3.41
766 767 2.271944 AGTTTAGGGGTGCAACTGAC 57.728 50.000 0.00 0.00 36.74 3.51
767 768 0.872388 GTTTAGGGGTGCAACTGACG 59.128 55.000 0.00 0.00 36.74 4.35
768 769 0.759959 TTTAGGGGTGCAACTGACGA 59.240 50.000 0.00 0.00 36.74 4.20
769 770 0.320374 TTAGGGGTGCAACTGACGAG 59.680 55.000 0.00 0.00 36.74 4.18
770 771 0.541063 TAGGGGTGCAACTGACGAGA 60.541 55.000 0.00 0.00 36.74 4.04
771 772 1.194781 AGGGGTGCAACTGACGAGAT 61.195 55.000 0.00 0.00 36.74 2.75
772 773 0.321653 GGGGTGCAACTGACGAGATT 60.322 55.000 0.00 0.00 36.74 2.40
773 774 1.523758 GGGTGCAACTGACGAGATTT 58.476 50.000 0.00 0.00 36.74 2.17
774 775 1.880027 GGGTGCAACTGACGAGATTTT 59.120 47.619 0.00 0.00 36.74 1.82
775 776 2.350772 GGGTGCAACTGACGAGATTTTG 60.351 50.000 0.00 0.00 36.74 2.44
776 777 2.548057 GGTGCAACTGACGAGATTTTGA 59.452 45.455 0.00 0.00 36.74 2.69
777 778 3.189287 GGTGCAACTGACGAGATTTTGAT 59.811 43.478 0.00 0.00 36.74 2.57
778 779 4.320494 GGTGCAACTGACGAGATTTTGATT 60.320 41.667 0.00 0.00 36.74 2.57
779 780 5.215160 GTGCAACTGACGAGATTTTGATTT 58.785 37.500 0.00 0.00 0.00 2.17
780 781 5.116074 GTGCAACTGACGAGATTTTGATTTG 59.884 40.000 0.00 0.00 0.00 2.32
781 782 4.618489 GCAACTGACGAGATTTTGATTTGG 59.382 41.667 0.00 0.00 0.00 3.28
782 783 5.156355 CAACTGACGAGATTTTGATTTGGG 58.844 41.667 0.00 0.00 0.00 4.12
783 784 3.758554 ACTGACGAGATTTTGATTTGGGG 59.241 43.478 0.00 0.00 0.00 4.96
784 785 3.088532 TGACGAGATTTTGATTTGGGGG 58.911 45.455 0.00 0.00 0.00 5.40
785 786 3.089284 GACGAGATTTTGATTTGGGGGT 58.911 45.455 0.00 0.00 0.00 4.95
786 787 3.506398 ACGAGATTTTGATTTGGGGGTT 58.494 40.909 0.00 0.00 0.00 4.11
787 788 3.509967 ACGAGATTTTGATTTGGGGGTTC 59.490 43.478 0.00 0.00 0.00 3.62
788 789 3.427503 CGAGATTTTGATTTGGGGGTTCG 60.428 47.826 0.00 0.00 0.00 3.95
789 790 3.506398 AGATTTTGATTTGGGGGTTCGT 58.494 40.909 0.00 0.00 0.00 3.85
790 791 3.901222 AGATTTTGATTTGGGGGTTCGTT 59.099 39.130 0.00 0.00 0.00 3.85
791 792 4.346709 AGATTTTGATTTGGGGGTTCGTTT 59.653 37.500 0.00 0.00 0.00 3.60
792 793 3.737032 TTTGATTTGGGGGTTCGTTTC 57.263 42.857 0.00 0.00 0.00 2.78
793 794 2.366640 TGATTTGGGGGTTCGTTTCA 57.633 45.000 0.00 0.00 0.00 2.69
794 795 1.957877 TGATTTGGGGGTTCGTTTCAC 59.042 47.619 0.00 0.00 0.00 3.18
795 796 1.271379 GATTTGGGGGTTCGTTTCACC 59.729 52.381 0.00 0.00 0.00 4.02
796 797 0.033405 TTTGGGGGTTCGTTTCACCA 60.033 50.000 0.00 0.00 35.80 4.17
797 798 0.033405 TTGGGGGTTCGTTTCACCAA 60.033 50.000 4.72 4.72 35.80 3.67
798 799 0.033405 TGGGGGTTCGTTTCACCAAA 60.033 50.000 0.00 0.00 35.80 3.28
799 800 0.386476 GGGGGTTCGTTTCACCAAAC 59.614 55.000 0.00 0.00 38.91 2.93
800 801 0.386476 GGGGTTCGTTTCACCAAACC 59.614 55.000 0.00 0.00 39.07 3.27
801 802 1.395635 GGGTTCGTTTCACCAAACCT 58.604 50.000 3.41 0.00 40.79 3.50
802 803 1.335810 GGGTTCGTTTCACCAAACCTC 59.664 52.381 3.41 0.00 40.79 3.85
803 804 2.294979 GGTTCGTTTCACCAAACCTCT 58.705 47.619 0.00 0.00 39.07 3.69
804 805 3.469739 GGTTCGTTTCACCAAACCTCTA 58.530 45.455 0.00 0.00 39.07 2.43
805 806 3.249320 GGTTCGTTTCACCAAACCTCTAC 59.751 47.826 0.00 0.00 39.07 2.59
806 807 3.823281 TCGTTTCACCAAACCTCTACA 57.177 42.857 0.00 0.00 39.07 2.74
807 808 4.139859 TCGTTTCACCAAACCTCTACAA 57.860 40.909 0.00 0.00 39.07 2.41
808 809 4.124238 TCGTTTCACCAAACCTCTACAAG 58.876 43.478 0.00 0.00 39.07 3.16
809 810 3.875134 CGTTTCACCAAACCTCTACAAGT 59.125 43.478 0.00 0.00 39.07 3.16
810 811 4.334481 CGTTTCACCAAACCTCTACAAGTT 59.666 41.667 0.00 0.00 39.07 2.66
811 812 5.163693 CGTTTCACCAAACCTCTACAAGTTT 60.164 40.000 0.00 0.00 39.07 2.66
812 813 6.037391 CGTTTCACCAAACCTCTACAAGTTTA 59.963 38.462 0.00 0.00 39.07 2.01
813 814 7.414319 CGTTTCACCAAACCTCTACAAGTTTAA 60.414 37.037 0.00 0.00 39.07 1.52
814 815 7.562454 TTCACCAAACCTCTACAAGTTTAAG 57.438 36.000 0.00 0.00 34.52 1.85
815 816 6.059484 TCACCAAACCTCTACAAGTTTAAGG 58.941 40.000 0.00 0.00 34.52 2.69
816 817 5.826208 CACCAAACCTCTACAAGTTTAAGGT 59.174 40.000 0.00 0.00 42.08 3.50
825 826 9.908152 CCTCTACAAGTTTAAGGTTTAAAATGG 57.092 33.333 0.00 4.81 0.00 3.16
854 855 7.931578 TTTTTCTGAAAAGGTCTGTTACAGA 57.068 32.000 11.42 11.42 33.12 3.41
874 875 6.701340 ACAGAACTACAGACTGATATGCAAA 58.299 36.000 10.08 0.00 35.85 3.68
879 880 3.878778 ACAGACTGATATGCAAACCCTC 58.121 45.455 10.08 0.00 0.00 4.30
923 924 3.821033 AGGTTTCCGTTGGAATTCAGAAG 59.179 43.478 7.93 0.00 41.71 2.85
932 933 6.208644 CGTTGGAATTCAGAAGAACAACATT 58.791 36.000 18.83 0.00 37.76 2.71
1046 1049 2.887568 GAGGTCGCTGTGCATCGG 60.888 66.667 0.00 0.00 0.00 4.18
1258 1261 2.786495 GCGAAGATCGGGGAGCTCA 61.786 63.158 17.19 0.00 40.84 4.26
1494 1497 1.079819 CGGCGTCATGGTCAAGTCT 60.080 57.895 0.00 0.00 0.00 3.24
2040 2043 1.800315 CGGCAAGTACGTCGTCCTG 60.800 63.158 0.00 0.00 0.00 3.86
2049 2052 2.338984 GTCGTCCTGGCGAACACT 59.661 61.111 13.33 0.00 42.82 3.55
2279 2282 3.674997 GAGTGTGAGCTATGGTGGAAAA 58.325 45.455 0.00 0.00 0.00 2.29
2280 2283 3.412386 AGTGTGAGCTATGGTGGAAAAC 58.588 45.455 0.00 0.00 0.00 2.43
2291 2294 1.543802 GGTGGAAAACATCGGCAATCA 59.456 47.619 0.00 0.00 0.00 2.57
2404 2407 2.434884 CAGGCAGTACCGGCAGTG 60.435 66.667 0.00 2.25 46.52 3.66
2420 2423 1.770658 CAGTGCCATCTGAAGGGGATA 59.229 52.381 0.59 0.00 37.61 2.59
2484 2487 4.205065 AGAACAGCTGATTTCTCTGGAG 57.795 45.455 23.35 0.00 32.42 3.86
2485 2488 3.582208 AGAACAGCTGATTTCTCTGGAGT 59.418 43.478 23.35 0.00 32.42 3.85
2554 2557 5.343307 ACAGTTGCCTGAATGAAACTTTT 57.657 34.783 0.00 0.00 41.50 2.27
2567 2570 9.103861 TGAATGAAACTTTTCCAAATGTTTACC 57.896 29.630 13.23 5.98 42.58 2.85
2575 2578 5.365403 TTCCAAATGTTTACCGCACTTAG 57.635 39.130 0.00 0.00 0.00 2.18
2861 2900 4.662278 TGCCTATCAGCTAAAACAAACCT 58.338 39.130 0.00 0.00 0.00 3.50
2862 2901 5.811190 TGCCTATCAGCTAAAACAAACCTA 58.189 37.500 0.00 0.00 0.00 3.08
2913 2952 5.931441 GTGCTGTTACACTGAATCTTTCT 57.069 39.130 0.00 0.00 37.58 2.52
2988 3027 4.657824 AAGCCCACACCGACGACG 62.658 66.667 0.00 0.00 39.43 5.12
3147 3186 3.283751 AGGTACGAGAGTTGAGAGATGG 58.716 50.000 0.00 0.00 46.40 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
71 72 9.835389 TGGATTTTGAGAAAAAGTTCATTGAAT 57.165 25.926 1.78 0.00 36.09 2.57
72 73 9.835389 ATGGATTTTGAGAAAAAGTTCATTGAA 57.165 25.926 0.00 0.00 36.09 2.69
73 74 9.263538 CATGGATTTTGAGAAAAAGTTCATTGA 57.736 29.630 0.00 0.00 36.09 2.57
74 75 9.263538 TCATGGATTTTGAGAAAAAGTTCATTG 57.736 29.630 0.00 0.00 36.09 2.82
75 76 9.835389 TTCATGGATTTTGAGAAAAAGTTCATT 57.165 25.926 0.00 0.00 36.09 2.57
76 77 9.264719 GTTCATGGATTTTGAGAAAAAGTTCAT 57.735 29.630 0.00 0.00 36.09 2.57
77 78 8.477256 AGTTCATGGATTTTGAGAAAAAGTTCA 58.523 29.630 0.00 0.00 36.09 3.18
78 79 8.877808 AGTTCATGGATTTTGAGAAAAAGTTC 57.122 30.769 0.00 0.00 33.47 3.01
79 80 9.671279 AAAGTTCATGGATTTTGAGAAAAAGTT 57.329 25.926 0.00 0.00 33.47 2.66
80 81 9.671279 AAAAGTTCATGGATTTTGAGAAAAAGT 57.329 25.926 0.00 0.00 33.47 2.66
126 127 9.579768 TGAAGAAAAGTTCATCGAATTCAAAAA 57.420 25.926 6.22 0.00 31.31 1.94
127 128 9.236691 CTGAAGAAAAGTTCATCGAATTCAAAA 57.763 29.630 6.22 0.00 35.88 2.44
128 129 8.620416 TCTGAAGAAAAGTTCATCGAATTCAAA 58.380 29.630 6.22 0.00 35.88 2.69
129 130 8.153479 TCTGAAGAAAAGTTCATCGAATTCAA 57.847 30.769 6.22 0.00 35.88 2.69
130 131 7.728847 TCTGAAGAAAAGTTCATCGAATTCA 57.271 32.000 6.22 0.00 35.88 2.57
131 132 8.896826 GTTTCTGAAGAAAAGTTCATCGAATTC 58.103 33.333 7.05 0.00 44.58 2.17
132 133 8.405531 TGTTTCTGAAGAAAAGTTCATCGAATT 58.594 29.630 7.05 0.00 44.58 2.17
133 134 7.930217 TGTTTCTGAAGAAAAGTTCATCGAAT 58.070 30.769 7.05 0.00 44.58 3.34
134 135 7.065803 ACTGTTTCTGAAGAAAAGTTCATCGAA 59.934 33.333 7.05 0.00 44.58 3.71
135 136 6.538742 ACTGTTTCTGAAGAAAAGTTCATCGA 59.461 34.615 7.05 0.00 44.58 3.59
136 137 6.630443 CACTGTTTCTGAAGAAAAGTTCATCG 59.370 38.462 7.05 0.09 44.58 3.84
137 138 7.697691 TCACTGTTTCTGAAGAAAAGTTCATC 58.302 34.615 7.05 0.00 44.58 2.92
138 139 7.630242 TCACTGTTTCTGAAGAAAAGTTCAT 57.370 32.000 7.05 0.00 44.58 2.57
139 140 7.174946 AGTTCACTGTTTCTGAAGAAAAGTTCA 59.825 33.333 7.05 1.29 44.58 3.18
140 141 7.530863 AGTTCACTGTTTCTGAAGAAAAGTTC 58.469 34.615 7.05 0.00 44.58 3.01
141 142 7.454260 AGTTCACTGTTTCTGAAGAAAAGTT 57.546 32.000 7.05 0.00 44.58 2.66
142 143 7.454260 AAGTTCACTGTTTCTGAAGAAAAGT 57.546 32.000 7.05 9.83 44.58 2.66
143 144 8.748380 AAAAGTTCACTGTTTCTGAAGAAAAG 57.252 30.769 7.05 9.31 44.58 2.27
207 208 9.526713 TGAACAAAGATCATCAATTTCGAAAAA 57.473 25.926 15.66 4.09 0.00 1.94
208 209 9.695526 ATGAACAAAGATCATCAATTTCGAAAA 57.304 25.926 15.66 0.00 32.07 2.29
209 210 9.695526 AATGAACAAAGATCATCAATTTCGAAA 57.304 25.926 13.91 13.91 36.53 3.46
210 211 9.695526 AAATGAACAAAGATCATCAATTTCGAA 57.304 25.926 0.00 0.00 36.53 3.71
211 212 9.695526 AAAATGAACAAAGATCATCAATTTCGA 57.304 25.926 0.00 0.00 36.53 3.71
216 217 8.918658 CGTGAAAAATGAACAAAGATCATCAAT 58.081 29.630 0.00 0.00 36.53 2.57
217 218 8.134261 TCGTGAAAAATGAACAAAGATCATCAA 58.866 29.630 0.00 0.00 36.53 2.57
218 219 7.647228 TCGTGAAAAATGAACAAAGATCATCA 58.353 30.769 0.00 0.00 36.53 3.07
219 220 8.506140 TTCGTGAAAAATGAACAAAGATCATC 57.494 30.769 0.00 0.00 36.53 2.92
313 314 9.453830 AACATTTAACCCTTCCTCTAGAGATAT 57.546 33.333 21.76 2.86 0.00 1.63
314 315 8.855804 AACATTTAACCCTTCCTCTAGAGATA 57.144 34.615 21.76 6.00 0.00 1.98
315 316 7.147461 GGAACATTTAACCCTTCCTCTAGAGAT 60.147 40.741 21.76 0.00 31.11 2.75
316 317 6.156429 GGAACATTTAACCCTTCCTCTAGAGA 59.844 42.308 21.76 4.61 31.11 3.10
317 318 6.157123 AGGAACATTTAACCCTTCCTCTAGAG 59.843 42.308 13.18 13.18 38.53 2.43
318 319 6.030082 AGGAACATTTAACCCTTCCTCTAGA 58.970 40.000 0.00 0.00 38.53 2.43
319 320 6.314899 AGGAACATTTAACCCTTCCTCTAG 57.685 41.667 0.00 0.00 38.53 2.43
323 324 3.329814 ACGAGGAACATTTAACCCTTCCT 59.670 43.478 6.48 6.48 44.34 3.36
324 325 3.682696 ACGAGGAACATTTAACCCTTCC 58.317 45.455 0.00 0.00 33.57 3.46
325 326 5.472478 AGAAACGAGGAACATTTAACCCTTC 59.528 40.000 0.00 0.00 0.00 3.46
326 327 5.382616 AGAAACGAGGAACATTTAACCCTT 58.617 37.500 0.00 0.00 0.00 3.95
327 328 4.981812 AGAAACGAGGAACATTTAACCCT 58.018 39.130 0.00 0.00 0.00 4.34
328 329 6.806388 TTAGAAACGAGGAACATTTAACCC 57.194 37.500 0.00 0.00 0.00 4.11
329 330 9.159364 ACTATTAGAAACGAGGAACATTTAACC 57.841 33.333 0.00 0.00 0.00 2.85
333 334 9.583765 GTCTACTATTAGAAACGAGGAACATTT 57.416 33.333 0.00 0.00 36.03 2.32
334 335 8.746530 TGTCTACTATTAGAAACGAGGAACATT 58.253 33.333 0.00 0.00 36.03 2.71
335 336 8.289939 TGTCTACTATTAGAAACGAGGAACAT 57.710 34.615 0.00 0.00 36.03 2.71
336 337 7.692460 TGTCTACTATTAGAAACGAGGAACA 57.308 36.000 0.00 0.00 36.03 3.18
337 338 7.220491 GCTTGTCTACTATTAGAAACGAGGAAC 59.780 40.741 0.00 0.00 36.03 3.62
338 339 7.122353 AGCTTGTCTACTATTAGAAACGAGGAA 59.878 37.037 0.00 0.00 36.03 3.36
339 340 6.602406 AGCTTGTCTACTATTAGAAACGAGGA 59.398 38.462 0.00 0.00 36.03 3.71
340 341 6.797454 AGCTTGTCTACTATTAGAAACGAGG 58.203 40.000 0.00 0.00 36.03 4.63
341 342 7.221067 CCAAGCTTGTCTACTATTAGAAACGAG 59.779 40.741 24.35 0.00 36.03 4.18
342 343 7.033791 CCAAGCTTGTCTACTATTAGAAACGA 58.966 38.462 24.35 0.00 36.03 3.85
343 344 6.237861 GCCAAGCTTGTCTACTATTAGAAACG 60.238 42.308 24.35 4.57 36.03 3.60
344 345 6.037281 GGCCAAGCTTGTCTACTATTAGAAAC 59.963 42.308 24.35 0.00 36.03 2.78
345 346 6.113411 GGCCAAGCTTGTCTACTATTAGAAA 58.887 40.000 24.35 0.00 36.03 2.52
346 347 5.671493 GGCCAAGCTTGTCTACTATTAGAA 58.329 41.667 24.35 0.00 36.03 2.10
347 348 4.202121 CGGCCAAGCTTGTCTACTATTAGA 60.202 45.833 24.35 0.00 31.39 2.10
348 349 4.051922 CGGCCAAGCTTGTCTACTATTAG 58.948 47.826 24.35 6.67 0.00 1.73
349 350 3.740141 GCGGCCAAGCTTGTCTACTATTA 60.740 47.826 24.35 0.00 0.00 0.98
350 351 2.906354 CGGCCAAGCTTGTCTACTATT 58.094 47.619 24.35 0.00 0.00 1.73
351 352 1.473434 GCGGCCAAGCTTGTCTACTAT 60.473 52.381 24.35 0.00 0.00 2.12
352 353 0.108329 GCGGCCAAGCTTGTCTACTA 60.108 55.000 24.35 0.00 0.00 1.82
353 354 1.376037 GCGGCCAAGCTTGTCTACT 60.376 57.895 24.35 0.00 0.00 2.57
354 355 1.376037 AGCGGCCAAGCTTGTCTAC 60.376 57.895 24.35 11.50 46.80 2.59
355 356 3.068881 AGCGGCCAAGCTTGTCTA 58.931 55.556 24.35 0.00 46.80 2.59
362 363 3.741476 CAGACCAAGCGGCCAAGC 61.741 66.667 2.24 0.00 34.57 4.01
363 364 3.058160 CCAGACCAAGCGGCCAAG 61.058 66.667 2.24 0.00 34.57 3.61
364 365 4.659172 CCCAGACCAAGCGGCCAA 62.659 66.667 2.24 0.00 34.57 4.52
368 369 3.920093 GAACCCCCAGACCAAGCGG 62.920 68.421 0.00 0.00 38.77 5.52
369 370 2.359975 GAACCCCCAGACCAAGCG 60.360 66.667 0.00 0.00 0.00 4.68
370 371 2.359975 CGAACCCCCAGACCAAGC 60.360 66.667 0.00 0.00 0.00 4.01
371 372 2.351276 CCGAACCCCCAGACCAAG 59.649 66.667 0.00 0.00 0.00 3.61
372 373 3.253838 CCCGAACCCCCAGACCAA 61.254 66.667 0.00 0.00 0.00 3.67
373 374 4.585216 ACCCGAACCCCCAGACCA 62.585 66.667 0.00 0.00 0.00 4.02
374 375 4.029809 CACCCGAACCCCCAGACC 62.030 72.222 0.00 0.00 0.00 3.85
375 376 1.482748 TAACACCCGAACCCCCAGAC 61.483 60.000 0.00 0.00 0.00 3.51
376 377 1.152074 TAACACCCGAACCCCCAGA 60.152 57.895 0.00 0.00 0.00 3.86
377 378 1.002990 GTAACACCCGAACCCCCAG 60.003 63.158 0.00 0.00 0.00 4.45
378 379 2.881528 CGTAACACCCGAACCCCCA 61.882 63.158 0.00 0.00 0.00 4.96
379 380 2.046988 CGTAACACCCGAACCCCC 60.047 66.667 0.00 0.00 0.00 5.40
380 381 0.534877 AAACGTAACACCCGAACCCC 60.535 55.000 0.00 0.00 0.00 4.95
381 382 0.867746 GAAACGTAACACCCGAACCC 59.132 55.000 0.00 0.00 0.00 4.11
382 383 1.794701 GAGAAACGTAACACCCGAACC 59.205 52.381 0.00 0.00 0.00 3.62
383 384 2.747436 AGAGAAACGTAACACCCGAAC 58.253 47.619 0.00 0.00 0.00 3.95
384 385 3.383761 GAAGAGAAACGTAACACCCGAA 58.616 45.455 0.00 0.00 0.00 4.30
385 386 2.288395 GGAAGAGAAACGTAACACCCGA 60.288 50.000 0.00 0.00 0.00 5.14
386 387 2.064014 GGAAGAGAAACGTAACACCCG 58.936 52.381 0.00 0.00 0.00 5.28
387 388 3.397849 AGGAAGAGAAACGTAACACCC 57.602 47.619 0.00 0.00 0.00 4.61
388 389 5.632764 GTCTAAGGAAGAGAAACGTAACACC 59.367 44.000 0.00 0.00 33.88 4.16
389 390 6.211515 TGTCTAAGGAAGAGAAACGTAACAC 58.788 40.000 0.00 0.00 33.88 3.32
390 391 6.040166 ACTGTCTAAGGAAGAGAAACGTAACA 59.960 38.462 0.00 0.00 33.88 2.41
391 392 6.362820 CACTGTCTAAGGAAGAGAAACGTAAC 59.637 42.308 0.00 0.00 33.88 2.50
392 393 6.444633 CACTGTCTAAGGAAGAGAAACGTAA 58.555 40.000 0.00 0.00 33.88 3.18
393 394 5.048224 CCACTGTCTAAGGAAGAGAAACGTA 60.048 44.000 0.00 0.00 33.88 3.57
394 395 4.262079 CCACTGTCTAAGGAAGAGAAACGT 60.262 45.833 0.00 0.00 33.88 3.99
395 396 4.238514 CCACTGTCTAAGGAAGAGAAACG 58.761 47.826 0.00 0.00 33.88 3.60
396 397 4.040584 ACCCACTGTCTAAGGAAGAGAAAC 59.959 45.833 0.00 0.00 33.88 2.78
397 398 4.232091 ACCCACTGTCTAAGGAAGAGAAA 58.768 43.478 0.00 0.00 33.88 2.52
398 399 3.858135 ACCCACTGTCTAAGGAAGAGAA 58.142 45.455 0.00 0.00 33.88 2.87
399 400 3.544698 ACCCACTGTCTAAGGAAGAGA 57.455 47.619 0.00 0.00 33.88 3.10
400 401 3.367498 CGAACCCACTGTCTAAGGAAGAG 60.367 52.174 0.00 0.00 33.88 2.85
401 402 2.561419 CGAACCCACTGTCTAAGGAAGA 59.439 50.000 0.00 0.00 0.00 2.87
402 403 2.561419 TCGAACCCACTGTCTAAGGAAG 59.439 50.000 0.00 0.00 0.00 3.46
403 404 2.561419 CTCGAACCCACTGTCTAAGGAA 59.439 50.000 0.00 0.00 0.00 3.36
404 405 2.168496 CTCGAACCCACTGTCTAAGGA 58.832 52.381 0.00 0.00 0.00 3.36
405 406 1.893801 ACTCGAACCCACTGTCTAAGG 59.106 52.381 0.00 0.00 0.00 2.69
406 407 2.820787 AGACTCGAACCCACTGTCTAAG 59.179 50.000 0.00 0.00 36.39 2.18
407 408 2.818432 GAGACTCGAACCCACTGTCTAA 59.182 50.000 1.67 0.00 38.00 2.10
408 409 2.224695 TGAGACTCGAACCCACTGTCTA 60.225 50.000 1.67 0.00 38.00 2.59
409 410 1.249407 GAGACTCGAACCCACTGTCT 58.751 55.000 1.29 1.29 40.21 3.41
410 411 0.959553 TGAGACTCGAACCCACTGTC 59.040 55.000 0.00 0.00 0.00 3.51
411 412 0.962489 CTGAGACTCGAACCCACTGT 59.038 55.000 0.00 0.00 0.00 3.55
412 413 0.962489 ACTGAGACTCGAACCCACTG 59.038 55.000 0.00 0.00 0.00 3.66
413 414 1.705873 AACTGAGACTCGAACCCACT 58.294 50.000 0.00 0.00 0.00 4.00
414 415 2.528041 AAACTGAGACTCGAACCCAC 57.472 50.000 0.00 0.00 0.00 4.61
415 416 3.202906 CAAAAACTGAGACTCGAACCCA 58.797 45.455 0.00 0.00 0.00 4.51
416 417 2.031944 GCAAAAACTGAGACTCGAACCC 60.032 50.000 0.00 0.00 0.00 4.11
417 418 2.612212 TGCAAAAACTGAGACTCGAACC 59.388 45.455 0.00 0.00 0.00 3.62
418 419 3.944422 TGCAAAAACTGAGACTCGAAC 57.056 42.857 0.00 0.00 0.00 3.95
419 420 3.876914 ACATGCAAAAACTGAGACTCGAA 59.123 39.130 0.00 0.00 0.00 3.71
420 421 3.466836 ACATGCAAAAACTGAGACTCGA 58.533 40.909 0.00 0.00 0.00 4.04
421 422 3.885484 ACATGCAAAAACTGAGACTCG 57.115 42.857 0.00 0.00 0.00 4.18
422 423 6.060028 TGTAACATGCAAAAACTGAGACTC 57.940 37.500 0.00 0.00 0.00 3.36
423 424 6.262944 TGATGTAACATGCAAAAACTGAGACT 59.737 34.615 0.00 0.00 0.00 3.24
424 425 6.437928 TGATGTAACATGCAAAAACTGAGAC 58.562 36.000 0.00 0.00 0.00 3.36
425 426 6.262944 ACTGATGTAACATGCAAAAACTGAGA 59.737 34.615 0.00 0.00 0.00 3.27
426 427 6.441274 ACTGATGTAACATGCAAAAACTGAG 58.559 36.000 0.00 0.00 0.00 3.35
427 428 6.389830 ACTGATGTAACATGCAAAAACTGA 57.610 33.333 0.00 0.00 0.00 3.41
428 429 6.803320 CCTACTGATGTAACATGCAAAAACTG 59.197 38.462 0.00 0.00 0.00 3.16
429 430 6.490040 ACCTACTGATGTAACATGCAAAAACT 59.510 34.615 0.00 0.00 0.00 2.66
430 431 6.677913 ACCTACTGATGTAACATGCAAAAAC 58.322 36.000 0.00 0.00 0.00 2.43
431 432 6.892658 ACCTACTGATGTAACATGCAAAAA 57.107 33.333 0.00 0.00 0.00 1.94
432 433 6.892658 AACCTACTGATGTAACATGCAAAA 57.107 33.333 0.00 0.00 0.00 2.44
433 434 6.892658 AAACCTACTGATGTAACATGCAAA 57.107 33.333 0.00 0.00 0.00 3.68
434 435 6.892658 AAAACCTACTGATGTAACATGCAA 57.107 33.333 0.00 0.00 0.00 4.08
435 436 6.892658 AAAAACCTACTGATGTAACATGCA 57.107 33.333 0.00 0.00 0.00 3.96
467 468 0.972883 CCGGCCCAATCAAGGAAAAA 59.027 50.000 0.00 0.00 0.00 1.94
468 469 1.540435 GCCGGCCCAATCAAGGAAAA 61.540 55.000 18.11 0.00 0.00 2.29
469 470 1.981853 GCCGGCCCAATCAAGGAAA 60.982 57.895 18.11 0.00 0.00 3.13
470 471 2.362375 GCCGGCCCAATCAAGGAA 60.362 61.111 18.11 0.00 0.00 3.36
471 472 4.440829 GGCCGGCCCAATCAAGGA 62.441 66.667 36.64 0.00 0.00 3.36
485 486 2.365095 AATACGTGAGCTAGCGGGCC 62.365 60.000 9.55 0.00 0.00 5.80
486 487 0.529992 AAATACGTGAGCTAGCGGGC 60.530 55.000 9.55 3.66 0.00 6.13
487 488 1.593006 CAAAATACGTGAGCTAGCGGG 59.407 52.381 9.55 2.45 0.00 6.13
488 489 1.004927 GCAAAATACGTGAGCTAGCGG 60.005 52.381 9.55 2.83 0.00 5.52
489 490 1.658596 TGCAAAATACGTGAGCTAGCG 59.341 47.619 9.55 7.71 0.00 4.26
490 491 2.537730 GCTGCAAAATACGTGAGCTAGC 60.538 50.000 6.62 6.62 0.00 3.42
491 492 2.285256 CGCTGCAAAATACGTGAGCTAG 60.285 50.000 0.00 0.00 0.00 3.42
492 493 1.658596 CGCTGCAAAATACGTGAGCTA 59.341 47.619 0.00 0.00 0.00 3.32
493 494 0.443869 CGCTGCAAAATACGTGAGCT 59.556 50.000 0.00 0.00 0.00 4.09
494 495 1.128147 GCGCTGCAAAATACGTGAGC 61.128 55.000 0.00 0.00 0.00 4.26
495 496 0.521242 GGCGCTGCAAAATACGTGAG 60.521 55.000 7.64 0.00 0.00 3.51
496 497 1.499949 GGCGCTGCAAAATACGTGA 59.500 52.632 7.64 0.00 0.00 4.35
497 498 1.863012 CGGCGCTGCAAAATACGTG 60.863 57.895 7.64 0.00 0.00 4.49
498 499 2.030401 TCGGCGCTGCAAAATACGT 61.030 52.632 12.58 0.00 0.00 3.57
499 500 1.580132 GTCGGCGCTGCAAAATACG 60.580 57.895 12.58 0.15 0.00 3.06
500 501 1.003851 TAGTCGGCGCTGCAAAATAC 58.996 50.000 12.58 3.00 0.00 1.89
501 502 1.663643 CTTAGTCGGCGCTGCAAAATA 59.336 47.619 12.58 0.00 0.00 1.40
502 503 0.447801 CTTAGTCGGCGCTGCAAAAT 59.552 50.000 12.58 0.00 0.00 1.82
503 504 0.601576 TCTTAGTCGGCGCTGCAAAA 60.602 50.000 12.58 4.09 0.00 2.44
504 505 0.601576 TTCTTAGTCGGCGCTGCAAA 60.602 50.000 12.58 4.47 0.00 3.68
505 506 1.005512 TTCTTAGTCGGCGCTGCAA 60.006 52.632 12.58 4.47 0.00 4.08
506 507 1.446099 CTTCTTAGTCGGCGCTGCA 60.446 57.895 12.58 0.00 0.00 4.41
507 508 1.142778 CTCTTCTTAGTCGGCGCTGC 61.143 60.000 12.58 6.97 0.00 5.25
508 509 1.142778 GCTCTTCTTAGTCGGCGCTG 61.143 60.000 10.86 10.86 0.00 5.18
509 510 1.139947 GCTCTTCTTAGTCGGCGCT 59.860 57.895 7.64 5.45 0.00 5.92
510 511 0.868177 GAGCTCTTCTTAGTCGGCGC 60.868 60.000 6.43 0.00 0.00 6.53
511 512 0.248702 GGAGCTCTTCTTAGTCGGCG 60.249 60.000 14.64 0.00 0.00 6.46
512 513 0.103390 GGGAGCTCTTCTTAGTCGGC 59.897 60.000 14.64 0.00 0.00 5.54
513 514 1.475403 TGGGAGCTCTTCTTAGTCGG 58.525 55.000 14.64 0.00 0.00 4.79
514 515 2.690497 TCATGGGAGCTCTTCTTAGTCG 59.310 50.000 14.64 0.00 0.00 4.18
515 516 4.744795 TTCATGGGAGCTCTTCTTAGTC 57.255 45.455 14.64 0.00 0.00 2.59
516 517 5.505181 TTTTCATGGGAGCTCTTCTTAGT 57.495 39.130 14.64 0.00 0.00 2.24
548 549 9.672086 CCATTCGTATTCTTTTTGTCTGTTAAA 57.328 29.630 0.00 0.00 0.00 1.52
549 550 8.293867 CCCATTCGTATTCTTTTTGTCTGTTAA 58.706 33.333 0.00 0.00 0.00 2.01
550 551 7.574217 GCCCATTCGTATTCTTTTTGTCTGTTA 60.574 37.037 0.00 0.00 0.00 2.41
551 552 6.677913 CCCATTCGTATTCTTTTTGTCTGTT 58.322 36.000 0.00 0.00 0.00 3.16
552 553 5.335661 GCCCATTCGTATTCTTTTTGTCTGT 60.336 40.000 0.00 0.00 0.00 3.41
553 554 5.095490 GCCCATTCGTATTCTTTTTGTCTG 58.905 41.667 0.00 0.00 0.00 3.51
554 555 5.010282 AGCCCATTCGTATTCTTTTTGTCT 58.990 37.500 0.00 0.00 0.00 3.41
555 556 5.095490 CAGCCCATTCGTATTCTTTTTGTC 58.905 41.667 0.00 0.00 0.00 3.18
556 557 4.082245 CCAGCCCATTCGTATTCTTTTTGT 60.082 41.667 0.00 0.00 0.00 2.83
557 558 4.423732 CCAGCCCATTCGTATTCTTTTTG 58.576 43.478 0.00 0.00 0.00 2.44
558 559 3.119137 GCCAGCCCATTCGTATTCTTTTT 60.119 43.478 0.00 0.00 0.00 1.94
559 560 2.427095 GCCAGCCCATTCGTATTCTTTT 59.573 45.455 0.00 0.00 0.00 2.27
560 561 2.024414 GCCAGCCCATTCGTATTCTTT 58.976 47.619 0.00 0.00 0.00 2.52
561 562 1.680338 GCCAGCCCATTCGTATTCTT 58.320 50.000 0.00 0.00 0.00 2.52
562 563 0.179018 GGCCAGCCCATTCGTATTCT 60.179 55.000 0.00 0.00 0.00 2.40
563 564 2.331265 GGCCAGCCCATTCGTATTC 58.669 57.895 0.00 0.00 0.00 1.75
564 565 4.579127 GGCCAGCCCATTCGTATT 57.421 55.556 0.00 0.00 0.00 1.89
596 597 4.735132 TGACTACAGCGCGCACCC 62.735 66.667 35.10 15.62 0.00 4.61
597 598 3.181967 CTGACTACAGCGCGCACC 61.182 66.667 35.10 14.90 37.33 5.01
615 616 0.036732 TGGGCCAAGAAGCAGTAGTG 59.963 55.000 2.13 0.00 0.00 2.74
616 617 0.036875 GTGGGCCAAGAAGCAGTAGT 59.963 55.000 8.40 0.00 0.00 2.73
617 618 0.678048 GGTGGGCCAAGAAGCAGTAG 60.678 60.000 8.40 0.00 34.09 2.57
618 619 1.378762 GGTGGGCCAAGAAGCAGTA 59.621 57.895 8.40 0.00 34.09 2.74
619 620 2.116125 GGTGGGCCAAGAAGCAGT 59.884 61.111 8.40 0.00 34.09 4.40
620 621 1.975407 CTGGTGGGCCAAGAAGCAG 60.975 63.158 8.40 7.16 45.51 4.24
621 622 2.115910 CTGGTGGGCCAAGAAGCA 59.884 61.111 8.40 0.00 45.51 3.91
622 623 3.376918 GCTGGTGGGCCAAGAAGC 61.377 66.667 8.40 14.36 45.51 3.86
630 631 3.628646 ATTCGTCTGGCTGGTGGGC 62.629 63.158 0.00 0.00 41.27 5.36
631 632 1.450312 GATTCGTCTGGCTGGTGGG 60.450 63.158 0.00 0.00 0.00 4.61
632 633 1.450312 GGATTCGTCTGGCTGGTGG 60.450 63.158 0.00 0.00 0.00 4.61
633 634 1.450312 GGGATTCGTCTGGCTGGTG 60.450 63.158 0.00 0.00 0.00 4.17
634 635 1.918293 TGGGATTCGTCTGGCTGGT 60.918 57.895 0.00 0.00 0.00 4.00
635 636 1.450312 GTGGGATTCGTCTGGCTGG 60.450 63.158 0.00 0.00 0.00 4.85
636 637 1.450312 GGTGGGATTCGTCTGGCTG 60.450 63.158 0.00 0.00 0.00 4.85
637 638 1.274703 ATGGTGGGATTCGTCTGGCT 61.275 55.000 0.00 0.00 0.00 4.75
638 639 0.468226 TATGGTGGGATTCGTCTGGC 59.532 55.000 0.00 0.00 0.00 4.85
639 640 4.569943 CTTATATGGTGGGATTCGTCTGG 58.430 47.826 0.00 0.00 0.00 3.86
640 641 3.997021 GCTTATATGGTGGGATTCGTCTG 59.003 47.826 0.00 0.00 0.00 3.51
641 642 3.904339 AGCTTATATGGTGGGATTCGTCT 59.096 43.478 0.00 0.00 0.00 4.18
642 643 4.273148 AGCTTATATGGTGGGATTCGTC 57.727 45.455 0.00 0.00 0.00 4.20
643 644 4.706842 AAGCTTATATGGTGGGATTCGT 57.293 40.909 0.00 0.00 0.00 3.85
644 645 6.391227 AAAAAGCTTATATGGTGGGATTCG 57.609 37.500 0.00 0.00 0.00 3.34
698 699 4.433615 TGGCGTTGTTTGAAGCATAAAAA 58.566 34.783 0.00 0.00 0.00 1.94
699 700 4.046938 TGGCGTTGTTTGAAGCATAAAA 57.953 36.364 0.00 0.00 0.00 1.52
700 701 3.316588 TCTGGCGTTGTTTGAAGCATAAA 59.683 39.130 0.00 0.00 0.00 1.40
701 702 2.881513 TCTGGCGTTGTTTGAAGCATAA 59.118 40.909 0.00 0.00 0.00 1.90
702 703 2.483877 CTCTGGCGTTGTTTGAAGCATA 59.516 45.455 0.00 0.00 0.00 3.14
703 704 1.267806 CTCTGGCGTTGTTTGAAGCAT 59.732 47.619 0.00 0.00 0.00 3.79
704 705 0.662619 CTCTGGCGTTGTTTGAAGCA 59.337 50.000 0.00 0.00 0.00 3.91
705 706 0.663153 ACTCTGGCGTTGTTTGAAGC 59.337 50.000 0.00 0.00 0.00 3.86
706 707 3.420839 AAACTCTGGCGTTGTTTGAAG 57.579 42.857 0.00 0.00 33.36 3.02
709 710 2.842208 TCAAACTCTGGCGTTGTTTG 57.158 45.000 17.11 17.11 46.74 2.93
710 711 4.385358 AAATCAAACTCTGGCGTTGTTT 57.615 36.364 0.00 0.00 34.69 2.83
711 712 4.819630 TCTAAATCAAACTCTGGCGTTGTT 59.180 37.500 0.00 0.00 0.00 2.83
712 713 4.213482 GTCTAAATCAAACTCTGGCGTTGT 59.787 41.667 0.00 0.00 0.00 3.32
713 714 4.452455 AGTCTAAATCAAACTCTGGCGTTG 59.548 41.667 0.00 0.00 0.00 4.10
714 715 4.452455 CAGTCTAAATCAAACTCTGGCGTT 59.548 41.667 0.00 0.00 0.00 4.84
715 716 3.997021 CAGTCTAAATCAAACTCTGGCGT 59.003 43.478 0.00 0.00 0.00 5.68
716 717 4.245660 TCAGTCTAAATCAAACTCTGGCG 58.754 43.478 0.00 0.00 0.00 5.69
717 718 6.560253 TTTCAGTCTAAATCAAACTCTGGC 57.440 37.500 0.00 0.00 0.00 4.85
718 719 7.540055 GCAATTTCAGTCTAAATCAAACTCTGG 59.460 37.037 0.00 0.00 0.00 3.86
719 720 8.077991 TGCAATTTCAGTCTAAATCAAACTCTG 58.922 33.333 0.00 0.00 0.00 3.35
720 721 8.169977 TGCAATTTCAGTCTAAATCAAACTCT 57.830 30.769 0.00 0.00 0.00 3.24
721 722 8.976986 ATGCAATTTCAGTCTAAATCAAACTC 57.023 30.769 0.00 0.00 0.00 3.01
723 724 9.846248 ACTATGCAATTTCAGTCTAAATCAAAC 57.154 29.630 0.00 0.00 0.00 2.93
729 730 8.956426 CCCTAAACTATGCAATTTCAGTCTAAA 58.044 33.333 0.00 0.00 0.00 1.85
730 731 7.556275 CCCCTAAACTATGCAATTTCAGTCTAA 59.444 37.037 0.00 0.00 0.00 2.10
731 732 7.054124 CCCCTAAACTATGCAATTTCAGTCTA 58.946 38.462 0.00 0.00 0.00 2.59
732 733 5.888161 CCCCTAAACTATGCAATTTCAGTCT 59.112 40.000 0.00 0.00 0.00 3.24
733 734 5.652452 ACCCCTAAACTATGCAATTTCAGTC 59.348 40.000 0.00 0.00 0.00 3.51
734 735 5.418840 CACCCCTAAACTATGCAATTTCAGT 59.581 40.000 0.00 0.00 0.00 3.41
735 736 5.679638 GCACCCCTAAACTATGCAATTTCAG 60.680 44.000 0.00 0.00 36.30 3.02
736 737 4.159506 GCACCCCTAAACTATGCAATTTCA 59.840 41.667 0.00 0.00 36.30 2.69
737 738 4.159506 TGCACCCCTAAACTATGCAATTTC 59.840 41.667 0.00 0.00 43.00 2.17
738 739 4.093011 TGCACCCCTAAACTATGCAATTT 58.907 39.130 0.00 0.00 43.00 1.82
739 740 3.707316 TGCACCCCTAAACTATGCAATT 58.293 40.909 0.00 0.00 43.00 2.32
740 741 3.380471 TGCACCCCTAAACTATGCAAT 57.620 42.857 0.00 0.00 43.00 3.56
741 742 2.889170 TGCACCCCTAAACTATGCAA 57.111 45.000 0.00 0.00 43.00 4.08
742 743 2.041081 AGTTGCACCCCTAAACTATGCA 59.959 45.455 0.00 0.00 44.19 3.96
743 744 2.423538 CAGTTGCACCCCTAAACTATGC 59.576 50.000 0.00 0.00 32.96 3.14
744 745 3.689649 GTCAGTTGCACCCCTAAACTATG 59.310 47.826 0.00 0.00 32.96 2.23
745 746 3.618997 CGTCAGTTGCACCCCTAAACTAT 60.619 47.826 0.00 0.00 32.96 2.12
746 747 2.289195 CGTCAGTTGCACCCCTAAACTA 60.289 50.000 0.00 0.00 32.96 2.24
747 748 1.542547 CGTCAGTTGCACCCCTAAACT 60.543 52.381 0.00 0.00 34.52 2.66
748 749 0.872388 CGTCAGTTGCACCCCTAAAC 59.128 55.000 0.00 0.00 0.00 2.01
749 750 0.759959 TCGTCAGTTGCACCCCTAAA 59.240 50.000 0.00 0.00 0.00 1.85
750 751 0.320374 CTCGTCAGTTGCACCCCTAA 59.680 55.000 0.00 0.00 0.00 2.69
751 752 0.541063 TCTCGTCAGTTGCACCCCTA 60.541 55.000 0.00 0.00 0.00 3.53
752 753 1.194781 ATCTCGTCAGTTGCACCCCT 61.195 55.000 0.00 0.00 0.00 4.79
753 754 0.321653 AATCTCGTCAGTTGCACCCC 60.322 55.000 0.00 0.00 0.00 4.95
754 755 1.523758 AAATCTCGTCAGTTGCACCC 58.476 50.000 0.00 0.00 0.00 4.61
755 756 2.548057 TCAAAATCTCGTCAGTTGCACC 59.452 45.455 0.00 0.00 0.00 5.01
756 757 3.878086 TCAAAATCTCGTCAGTTGCAC 57.122 42.857 0.00 0.00 0.00 4.57
757 758 5.214417 CAAATCAAAATCTCGTCAGTTGCA 58.786 37.500 0.00 0.00 0.00 4.08
758 759 4.618489 CCAAATCAAAATCTCGTCAGTTGC 59.382 41.667 0.00 0.00 0.00 4.17
759 760 5.156355 CCCAAATCAAAATCTCGTCAGTTG 58.844 41.667 0.00 0.00 0.00 3.16
760 761 4.218417 CCCCAAATCAAAATCTCGTCAGTT 59.782 41.667 0.00 0.00 0.00 3.16
761 762 3.758554 CCCCAAATCAAAATCTCGTCAGT 59.241 43.478 0.00 0.00 0.00 3.41
762 763 3.129287 CCCCCAAATCAAAATCTCGTCAG 59.871 47.826 0.00 0.00 0.00 3.51
763 764 3.088532 CCCCCAAATCAAAATCTCGTCA 58.911 45.455 0.00 0.00 0.00 4.35
764 765 3.089284 ACCCCCAAATCAAAATCTCGTC 58.911 45.455 0.00 0.00 0.00 4.20
765 766 3.169512 ACCCCCAAATCAAAATCTCGT 57.830 42.857 0.00 0.00 0.00 4.18
766 767 3.427503 CGAACCCCCAAATCAAAATCTCG 60.428 47.826 0.00 0.00 0.00 4.04
767 768 3.509967 ACGAACCCCCAAATCAAAATCTC 59.490 43.478 0.00 0.00 0.00 2.75
768 769 3.506398 ACGAACCCCCAAATCAAAATCT 58.494 40.909 0.00 0.00 0.00 2.40
769 770 3.953712 ACGAACCCCCAAATCAAAATC 57.046 42.857 0.00 0.00 0.00 2.17
770 771 4.101741 TGAAACGAACCCCCAAATCAAAAT 59.898 37.500 0.00 0.00 0.00 1.82
771 772 3.451178 TGAAACGAACCCCCAAATCAAAA 59.549 39.130 0.00 0.00 0.00 2.44
772 773 3.031736 TGAAACGAACCCCCAAATCAAA 58.968 40.909 0.00 0.00 0.00 2.69
773 774 2.362717 GTGAAACGAACCCCCAAATCAA 59.637 45.455 0.00 0.00 0.00 2.57
774 775 1.957877 GTGAAACGAACCCCCAAATCA 59.042 47.619 0.00 0.00 0.00 2.57
775 776 1.271379 GGTGAAACGAACCCCCAAATC 59.729 52.381 0.00 0.00 38.12 2.17
776 777 1.334160 GGTGAAACGAACCCCCAAAT 58.666 50.000 0.00 0.00 38.12 2.32
777 778 0.033405 TGGTGAAACGAACCCCCAAA 60.033 50.000 0.00 0.00 38.12 3.28
778 779 0.033405 TTGGTGAAACGAACCCCCAA 60.033 50.000 0.00 0.00 38.12 4.12
779 780 0.033405 TTTGGTGAAACGAACCCCCA 60.033 50.000 0.00 0.00 33.06 4.96
780 781 0.386476 GTTTGGTGAAACGAACCCCC 59.614 55.000 0.00 0.00 33.06 5.40
781 782 0.386476 GGTTTGGTGAAACGAACCCC 59.614 55.000 6.26 0.00 43.63 4.95
782 783 3.951115 GGTTTGGTGAAACGAACCC 57.049 52.632 6.26 0.00 43.63 4.11
784 785 3.872771 TGTAGAGGTTTGGTGAAACGAAC 59.127 43.478 0.00 0.00 42.20 3.95
785 786 4.139859 TGTAGAGGTTTGGTGAAACGAA 57.860 40.909 0.00 0.00 42.20 3.85
786 787 3.823281 TGTAGAGGTTTGGTGAAACGA 57.177 42.857 0.00 0.00 42.20 3.85
787 788 3.875134 ACTTGTAGAGGTTTGGTGAAACG 59.125 43.478 0.00 0.00 42.20 3.60
788 789 5.830000 AACTTGTAGAGGTTTGGTGAAAC 57.170 39.130 0.00 0.00 40.79 2.78
789 790 7.067737 CCTTAAACTTGTAGAGGTTTGGTGAAA 59.932 37.037 9.98 0.00 36.47 2.69
790 791 6.544564 CCTTAAACTTGTAGAGGTTTGGTGAA 59.455 38.462 9.98 0.00 36.47 3.18
791 792 6.059484 CCTTAAACTTGTAGAGGTTTGGTGA 58.941 40.000 9.98 0.00 36.47 4.02
792 793 5.826208 ACCTTAAACTTGTAGAGGTTTGGTG 59.174 40.000 9.98 1.72 38.45 4.17
793 794 6.009908 ACCTTAAACTTGTAGAGGTTTGGT 57.990 37.500 9.98 7.00 37.44 3.67
794 795 6.954487 AACCTTAAACTTGTAGAGGTTTGG 57.046 37.500 9.98 6.44 45.76 3.28
799 800 9.908152 CCATTTTAAACCTTAAACTTGTAGAGG 57.092 33.333 0.00 0.00 0.00 3.69
830 831 7.931578 TCTGTAACAGACCTTTTCAGAAAAA 57.068 32.000 9.63 0.00 35.39 1.94
831 832 7.610305 AGTTCTGTAACAGACCTTTTCAGAAAA 59.390 33.333 8.09 8.09 40.46 2.29
832 833 7.110155 AGTTCTGTAACAGACCTTTTCAGAAA 58.890 34.615 0.00 0.00 40.46 2.52
833 834 6.650120 AGTTCTGTAACAGACCTTTTCAGAA 58.350 36.000 0.00 0.00 40.46 3.02
834 835 6.235231 AGTTCTGTAACAGACCTTTTCAGA 57.765 37.500 0.00 0.00 40.46 3.27
835 836 6.984474 TGTAGTTCTGTAACAGACCTTTTCAG 59.016 38.462 0.00 0.00 40.46 3.02
836 837 6.880484 TGTAGTTCTGTAACAGACCTTTTCA 58.120 36.000 0.00 0.00 40.46 2.69
837 838 7.208080 TCTGTAGTTCTGTAACAGACCTTTTC 58.792 38.462 0.00 0.00 43.45 2.29
838 839 7.120923 TCTGTAGTTCTGTAACAGACCTTTT 57.879 36.000 0.00 0.00 43.45 2.27
839 840 6.726490 TCTGTAGTTCTGTAACAGACCTTT 57.274 37.500 0.00 0.00 43.45 3.11
844 845 8.678199 CATATCAGTCTGTAGTTCTGTAACAGA 58.322 37.037 0.00 0.46 45.48 3.41
845 846 7.433719 GCATATCAGTCTGTAGTTCTGTAACAG 59.566 40.741 0.00 0.00 41.58 3.16
846 847 7.093945 TGCATATCAGTCTGTAGTTCTGTAACA 60.094 37.037 0.00 0.00 38.12 2.41
847 848 7.258441 TGCATATCAGTCTGTAGTTCTGTAAC 58.742 38.462 0.00 0.00 35.72 2.50
848 849 7.404671 TGCATATCAGTCTGTAGTTCTGTAA 57.595 36.000 0.00 0.00 0.00 2.41
849 850 7.404671 TTGCATATCAGTCTGTAGTTCTGTA 57.595 36.000 0.00 0.00 0.00 2.74
850 851 5.921962 TGCATATCAGTCTGTAGTTCTGT 57.078 39.130 0.00 0.00 0.00 3.41
851 852 6.036517 GGTTTGCATATCAGTCTGTAGTTCTG 59.963 42.308 0.00 0.00 0.00 3.02
852 853 6.109359 GGTTTGCATATCAGTCTGTAGTTCT 58.891 40.000 0.00 0.00 0.00 3.01
853 854 5.294552 GGGTTTGCATATCAGTCTGTAGTTC 59.705 44.000 0.00 0.00 0.00 3.01
854 855 5.045578 AGGGTTTGCATATCAGTCTGTAGTT 60.046 40.000 0.00 0.00 0.00 2.24
861 862 2.906354 ACGAGGGTTTGCATATCAGTC 58.094 47.619 0.00 0.00 0.00 3.51
874 875 6.238925 CCTGTTTCAAAGATAAAAACGAGGGT 60.239 38.462 0.00 0.00 36.02 4.34
879 880 7.200455 ACCTTCCTGTTTCAAAGATAAAAACG 58.800 34.615 0.00 0.00 36.02 3.60
923 924 5.429957 AGTTGCTCAGAAGAATGTTGTTC 57.570 39.130 0.00 0.00 0.00 3.18
932 933 5.065914 AGCATGTTTTAGTTGCTCAGAAGA 58.934 37.500 0.00 0.00 42.88 2.87
1596 1599 1.079819 CATGGTGACGTTCCGCTCT 60.080 57.895 0.00 0.00 0.00 4.09
1773 1776 0.175760 GCATGGACGAGAAGTGCCTA 59.824 55.000 0.00 0.00 40.82 3.93
1991 1994 4.467062 GCAGCCGAAAGAAGCGCC 62.467 66.667 2.29 0.00 0.00 6.53
2020 2023 2.256461 GACGACGTACTTGCCGGT 59.744 61.111 1.90 0.00 0.00 5.28
2055 2058 4.758251 TCCCACATGTCGCAGGCG 62.758 66.667 7.46 7.46 41.35 5.52
2172 2175 0.532573 CGTGGTATGTGTCTCTGGCT 59.467 55.000 0.00 0.00 0.00 4.75
2291 2294 0.247736 GAACATCTCCGACCAGCAGT 59.752 55.000 0.00 0.00 0.00 4.40
2404 2407 4.077822 CAGAAATATCCCCTTCAGATGGC 58.922 47.826 0.00 0.00 0.00 4.40
2420 2423 4.139786 ACTGTGCTGTGTCATTCAGAAAT 58.860 39.130 0.00 0.00 35.20 2.17
2484 2487 2.565841 AGCTGACCTGAGTTTGTTGAC 58.434 47.619 0.00 0.00 0.00 3.18
2485 2488 3.388024 ACTAGCTGACCTGAGTTTGTTGA 59.612 43.478 0.00 0.00 0.00 3.18
2554 2557 3.189702 GCTAAGTGCGGTAAACATTTGGA 59.810 43.478 0.00 0.00 0.00 3.53
2566 2569 0.729116 CCTGTCAATGCTAAGTGCGG 59.271 55.000 0.00 0.00 46.63 5.69
2567 2570 0.729116 CCCTGTCAATGCTAAGTGCG 59.271 55.000 0.00 0.00 46.63 5.34
2575 2578 8.680903 CATAATTTATATCTCCCCTGTCAATGC 58.319 37.037 0.00 0.00 0.00 3.56
2913 2952 4.462132 CCATTCATGGTGTAATGTTGTCCA 59.538 41.667 0.00 0.00 43.05 4.02
2973 3012 4.651008 TTCGTCGTCGGTGTGGGC 62.651 66.667 1.55 0.00 37.69 5.36
2988 3027 3.065786 TCATGCAATCCATCGCTTTCTTC 59.934 43.478 0.00 0.00 29.71 2.87


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.