AutoCloner

Multiple sequence alignment - TraesCS7B01G294700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)

BLAST Results

Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

	qseqid	sseqid	percentage.identical	alignment.length	no.mismatch	no.gap.openings	qstart	qend	sstart	send	evalue	bitscore
0	TraesCS7B01G294700	chr7B	100.000	3077	0	0	1	3077	531654199	531657275	0.000000e+00	5683.0
1	TraesCS7B01G294700	chr7B	97.826	92	1	1	2666	2756	482820132	482820041	1.140000e-34	158.0
2	TraesCS7B01G294700	chr7B	78.455	246	25	11	1504	1723	470838181	470837938	5.350000e-28	135.0
3	TraesCS7B01G294700	chr7D	92.677	2540	114	22	12	2491	502872861	502875388	0.000000e+00	3594.0
4	TraesCS7B01G294700	chr7D	83.951	243	24	9	2759	2994	502875995	502876229	5.170000e-53	219.0
5	TraesCS7B01G294700	chr7D	78.419	329	58	9	430	755	27057229	27056911	5.200000e-48	202.0
6	TraesCS7B01G294700	chr7D	97.753	89	2	0	2669	2757	626381623	626381711	1.480000e-33	154.0
7	TraesCS7B01G294700	chr7D	78.205	234	27	12	1504	1715	451189059	451188828	8.960000e-26	128.0
8	TraesCS7B01G294700	chr7A	95.902	732	27	3	831	1561	570113145	570113874	0.000000e+00	1182.0
9	TraesCS7B01G294700	chr7A	95.687	742	17	6	14	755	570112370	570113096	0.000000e+00	1179.0
10	TraesCS7B01G294700	chr7A	92.034	816	50	4	1418	2231	570113875	570114677	0.000000e+00	1133.0
11	TraesCS7B01G294700	chr7A	90.395	354	18	8	2286	2627	570114676	570115025	4.680000e-123	451.0
12	TraesCS7B01G294700	chr7A	92.647	272	17	1	2809	3077	570115156	570115427	3.720000e-104	388.0
13	TraesCS7B01G294700	chr7A	98.000	50	1	0	2624	2673	570115070	570115119	1.520000e-13	87.9
14	TraesCS7B01G294700	chr5B	85.028	708	72	15	786	1491	270438338	270437663	0.000000e+00	689.0
15	TraesCS7B01G294700	chr5B	83.447	731	94	18	1719	2434	270437626	270436908	0.000000e+00	654.0
16	TraesCS7B01G294700	chr5A	85.164	701	65	14	796	1491	320213762	320213096	0.000000e+00	682.0
17	TraesCS7B01G294700	chr5A	83.858	731	96	14	1719	2432	320213059	320212334	0.000000e+00	676.0
18	TraesCS7B01G294700	chr5A	100.000	87	0	0	2670	2756	635414058	635413972	8.830000e-36	161.0
19	TraesCS7B01G294700	chr5D	85.325	661	64	17	827	1485	234145714	234146343	0.000000e+00	652.0
20	TraesCS7B01G294700	chr5D	84.838	587	76	10	1720	2300	234146388	234146967	2.060000e-161	579.0
21	TraesCS7B01G294700	chr5D	91.743	109	6	2	2650	2756	513908187	513908294	6.870000e-32	148.0
22	TraesCS7B01G294700	chr6B	82.277	773	97	28	10	755	272629527	272630286	1.560000e-177	632.0
23	TraesCS7B01G294700	chr6B	96.703	91	3	0	2670	2760	459601724	459601634	5.310000e-33	152.0
24	TraesCS7B01G294700	chr6B	91.071	112	8	2	2653	2764	546656557	546656666	1.910000e-32	150.0
25	TraesCS7B01G294700	chr2A	100.000	87	0	0	2671	2757	197673589	197673503	8.830000e-36	161.0
26	TraesCS7B01G294700	chr2A	97.753	89	2	0	2668	2756	207651876	207651964	1.480000e-33	154.0
27	TraesCS7B01G294700	chr6A	91.346	104	9	0	2653	2756	337716815	337716918	3.200000e-30	143.0
28	TraesCS7B01G294700	chr4D	77.729	229	26	12	1512	1717	58141424	58141650	1.940000e-22	117.0
29	TraesCS7B01G294700	chr4B	89.041	73	7	1	18	90	517988973	517989044	4.230000e-14	89.8

These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

	query	scaffold	start	end	length	rev.comp	avg.bitscore	max.bitscore	avg.percent.identical	query.start	query.end	num_hsp	groupid	homo_length
0	TraesCS7B01G294700	chr7B	531654199	531657275	3076	False	5683.000000	5683	100.000000	1	3077	1	chr7B.!!$F1	3076
1	TraesCS7B01G294700	chr7D	502872861	502876229	3368	False	1906.500000	3594	88.314000	12	2994	2	chr7D.!!$F2	2982
2	TraesCS7B01G294700	chr7A	570112370	570115427	3057	False	736.816667	1182	94.110833	14	3077	6	chr7A.!!$F1	3063
3	TraesCS7B01G294700	chr5B	270436908	270438338	1430	True	671.500000	689	84.237500	786	2434	2	chr5B.!!$R1	1648
4	TraesCS7B01G294700	chr5A	320212334	320213762	1428	True	679.000000	682	84.511000	796	2432	2	chr5A.!!$R2	1636
5	TraesCS7B01G294700	chr5D	234145714	234146967	1253	False	615.500000	652	85.081500	827	2300	2	chr5D.!!$F2	1473
6	TraesCS7B01G294700	chr6B	272629527	272630286	759	False	632.000000	632	82.277000	10	755	1	chr6B.!!$F1	745

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
618	646	0.104882	TGGTGAGTGTAACCCAGGGA	60.105	55.0	14.54	0.0	37.8	4.20	F
1641	1861	0.958091	TCATCCAAAAACTGCCACCG	59.042	50.0	0.00	0.0	0.0	4.94	F

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability	Orientation
2040	2267	0.107361	ACGCAAAGGTATACCCTGGC	60.107	55.0	18.65	13.91	45.47	4.85	R
2485	2733	0.109597	GTCCCTTTGCAATGTCAGCG	60.110	55.0	0.00	0.00	33.85	5.18	R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
41	42	6.205784	CCTTACACAACCAATACAAACTGTG	58.794	40.000	0.00	0.00	39.96	3.66
245	246	2.369257	ATCCTGCTGATGGCCGTACG	62.369	60.000	8.69	8.69	40.92	3.67
618	646	0.104882	TGGTGAGTGTAACCCAGGGA	60.105	55.000	14.54	0.00	37.80	4.20
619	647	1.061546	GGTGAGTGTAACCCAGGGAA	58.938	55.000	14.54	0.00	37.80	3.97
735	765	3.705604	CCTGGCCAATTTATTAAGCACG	58.294	45.455	7.01	0.00	0.00	5.34
839	887	9.785982	AAAATAGCTACTTCTCAGTTTCTTTCT	57.214	29.630	0.00	0.00	34.06	2.52
1276	1328	8.958119	TCTTCCTGGTATGTCAATTATACAAC	57.042	34.615	0.00	0.00	33.66	3.32
1315	1367	7.836479	TTCCATATTGTGATTGATATGCCAA	57.164	32.000	0.00	0.00	35.75	4.52
1331	1383	2.827322	TGCCAATGTTTCATCTTCCAGG	59.173	45.455	0.00	0.00	0.00	4.45
1448	1502	2.263741	CCACTTGCACCACTGGAGC	61.264	63.158	10.38	10.38	39.68	4.70
1519	1574	6.811574	ACTTTCCATAAAAATAGGACCCCTT	58.188	36.000	0.00	0.00	34.61	3.95
1585	1785	1.244816	GGGGTGGCAGTTTTAGTGTC	58.755	55.000	0.00	0.00	0.00	3.67
1641	1861	0.958091	TCATCCAAAAACTGCCACCG	59.042	50.000	0.00	0.00	0.00	4.94
1763	1984	7.042335	GCATTACTGGAGTATGTAAGACAAGT	58.958	38.462	0.00	0.00	33.02	3.16
1942	2167	7.372260	AGCATCTCATCTATAAACTGTTCCT	57.628	36.000	0.00	0.00	0.00	3.36
2040	2267	4.742417	CATACTATTCATGGAGAGGAGCG	58.258	47.826	0.00	0.00	0.00	5.03
2049	2276	1.834822	GAGAGGAGCGCCAGGGTAT	60.835	63.158	9.88	0.00	36.29	2.73
2086	2313	8.086522	CCATTCCAGATTATTAGCCTTTGATTG	58.913	37.037	0.00	0.00	0.00	2.67
2102	2329	3.521560	TGATTGTAACTCATCGACTGGC	58.478	45.455	0.00	0.00	0.00	4.85
2110	2337	2.501723	ACTCATCGACTGGCCAGTAAAT	59.498	45.455	37.87	28.44	42.66	1.40
2125	2352	7.123397	TGGCCAGTAAATATATTGAACAGCAAA	59.877	33.333	0.00	9.83	40.48	3.68
2140	2367	9.985318	TTGAACAGCAAAAACAAAAATATGAAG	57.015	25.926	0.00	0.00	32.46	3.02
2259	2486	1.136252	CGATGTTGTTTCGTGAGGCAG	60.136	52.381	0.00	0.00	32.08	4.85
2302	2531	1.962144	CTGCTCCCTTGTGCTTTGG	59.038	57.895	0.00	0.00	32.27	3.28
2345	2575	7.075741	CGTAGATTGGTTTTTGGAGTTACTTG	58.924	38.462	0.00	0.00	0.00	3.16
2352	2582	8.335532	TGGTTTTTGGAGTTACTTGAGATATG	57.664	34.615	0.00	0.00	0.00	1.78
2354	2584	9.178758	GGTTTTTGGAGTTACTTGAGATATGAT	57.821	33.333	0.00	0.00	0.00	2.45
2445	2693	4.772886	ACCCCATACTTTATCTGTGGTC	57.227	45.455	0.00	0.00	0.00	4.02
2512	2760	2.594592	GCAAAGGGACGCTGTGGT	60.595	61.111	11.39	0.00	0.00	4.16
2545	3178	3.490759	CTGGCGGTGTCACGATGC	61.491	66.667	0.00	1.05	35.47	3.91
2584	3217	2.050350	TGTCCCGGCTACTCCTTCG	61.050	63.158	0.00	0.00	0.00	3.79
2599	3232	1.067776	CCTTCGGTGCTACGACTCTTT	60.068	52.381	2.86	0.00	43.37	2.52
2607	3240	2.271800	GCTACGACTCTTTGTCATGGG	58.728	52.381	0.00	0.00	45.60	4.00
2669	3364	2.738846	CACCTTCCATCTCGTCAAGTTG	59.261	50.000	0.00	0.00	0.00	3.16
2670	3365	2.368875	ACCTTCCATCTCGTCAAGTTGT	59.631	45.455	2.11	0.00	0.00	3.32
2671	3366	3.576982	ACCTTCCATCTCGTCAAGTTGTA	59.423	43.478	2.11	0.00	0.00	2.41
2672	3367	3.927142	CCTTCCATCTCGTCAAGTTGTAC	59.073	47.826	2.11	0.00	0.00	2.90
2673	3368	4.322049	CCTTCCATCTCGTCAAGTTGTACT	60.322	45.833	2.11	0.00	0.00	2.73
2674	3369	4.436242	TCCATCTCGTCAAGTTGTACTC	57.564	45.455	2.11	0.00	0.00	2.59
2675	3370	3.192844	TCCATCTCGTCAAGTTGTACTCC	59.807	47.826	2.11	0.00	0.00	3.85
2676	3371	3.512680	CATCTCGTCAAGTTGTACTCCC	58.487	50.000	2.11	0.00	0.00	4.30
2677	3372	2.872732	TCTCGTCAAGTTGTACTCCCT	58.127	47.619	2.11	0.00	0.00	4.20
2678	3373	2.818432	TCTCGTCAAGTTGTACTCCCTC	59.182	50.000	2.11	0.00	0.00	4.30
2679	3374	2.820787	CTCGTCAAGTTGTACTCCCTCT	59.179	50.000	2.11	0.00	0.00	3.69
2680	3375	2.557056	TCGTCAAGTTGTACTCCCTCTG	59.443	50.000	2.11	0.00	0.00	3.35
2681	3376	2.296471	CGTCAAGTTGTACTCCCTCTGT	59.704	50.000	2.11	0.00	0.00	3.41
2682	3377	3.504906	CGTCAAGTTGTACTCCCTCTGTA	59.495	47.826	2.11	0.00	0.00	2.74
2683	3378	4.022589	CGTCAAGTTGTACTCCCTCTGTAA	60.023	45.833	2.11	0.00	0.00	2.41
2684	3379	5.508489	CGTCAAGTTGTACTCCCTCTGTAAA	60.508	44.000	2.11	0.00	0.00	2.01
2685	3380	5.695363	GTCAAGTTGTACTCCCTCTGTAAAC	59.305	44.000	2.11	0.00	0.00	2.01
2686	3381	5.601313	TCAAGTTGTACTCCCTCTGTAAACT	59.399	40.000	2.11	0.00	0.00	2.66
2687	3382	6.779049	TCAAGTTGTACTCCCTCTGTAAACTA	59.221	38.462	2.11	0.00	0.00	2.24
2688	3383	7.288389	TCAAGTTGTACTCCCTCTGTAAACTAA	59.712	37.037	2.11	0.00	0.00	2.24
2689	3384	7.793948	AGTTGTACTCCCTCTGTAAACTAAT	57.206	36.000	0.00	0.00	0.00	1.73
2690	3385	8.890410	AGTTGTACTCCCTCTGTAAACTAATA	57.110	34.615	0.00	0.00	0.00	0.98
2691	3386	9.490083	AGTTGTACTCCCTCTGTAAACTAATAT	57.510	33.333	0.00	0.00	0.00	1.28
2697	3392	9.939424	ACTCCCTCTGTAAACTAATATAAGAGT	57.061	33.333	0.00	0.00	0.00	3.24
2699	3394	9.710818	TCCCTCTGTAAACTAATATAAGAGTGT	57.289	33.333	0.00	0.00	0.00	3.55
2749	3444	8.524487	AGATGCTCTTATATTAGTTTACGGAGG	58.476	37.037	0.00	0.00	0.00	4.30
2750	3445	6.989659	TGCTCTTATATTAGTTTACGGAGGG	58.010	40.000	0.00	0.00	0.00	4.30
2751	3446	6.779049	TGCTCTTATATTAGTTTACGGAGGGA	59.221	38.462	0.00	0.00	0.00	4.20
2769	3464	2.268298	GGAGTACACTGTTACGCCATG	58.732	52.381	13.60	0.00	36.39	3.66
2891	3593	8.517062	TCAAGTACCTACTTACTACATTCCTC	57.483	38.462	0.00	0.00	44.19	3.71
2902	3604	5.924475	ACTACATTCCTCGAAACAAACAG	57.076	39.130	0.00	0.00	0.00	3.16
2938	3643	5.765677	ACTCTAAAGGTTTCTTTCTCAAGCC	59.234	40.000	0.00	0.00	41.82	4.35
2979	3684	4.380867	GCACATGGTAAACTGGGAATCAAG	60.381	45.833	0.00	0.00	0.00	3.02
2981	3686	3.806949	TGGTAAACTGGGAATCAAGCT	57.193	42.857	0.00	0.00	0.00	3.74
2983	3688	5.249780	TGGTAAACTGGGAATCAAGCTAA	57.750	39.130	0.00	0.00	0.00	3.09
2987	3692	5.453567	AAACTGGGAATCAAGCTAACAAC	57.546	39.130	0.00	0.00	0.00	3.32
2994	3699	4.143094	GGAATCAAGCTAACAACTGACGAC	60.143	45.833	0.00	0.00	0.00	4.34
3007	3712	1.863454	CTGACGACCTGCTGATAATGC	59.137	52.381	0.00	0.00	0.00	3.56
3032	3737	1.579084	GCTCTCTGTCGTGGTCGTCT	61.579	60.000	0.00	0.00	38.33	4.18
3033	3738	0.875728	CTCTCTGTCGTGGTCGTCTT	59.124	55.000	0.00	0.00	38.33	3.01
3063	3768	1.089481	GCATGGCGAGAATGGTCGAA	61.089	55.000	0.00	0.00	42.85	3.71

Position	MSA Position	Penalty	Sequence	TM	GC	Self any TH	Self end TH	Hairpin	End Stability
245	246	7.046652	CAGTATGGTCATCAATAGGATCATCC	58.953	42.308	0.00	0.00	36.70	3.51
468	495	9.534565	GAAGATATTGCACAGATCAGTACTTAA	57.465	33.333	0.00	0.00	0.00	1.85
484	511	9.884465	GTTTACATCATACCTTGAAGATATTGC	57.116	33.333	0.00	0.00	38.03	3.56
719	749	4.096382	ACCTGAGCGTGCTTAATAAATTGG	59.904	41.667	0.00	0.00	0.00	3.16
726	756	3.195825	AGAGTAACCTGAGCGTGCTTAAT	59.804	43.478	0.00	0.00	0.00	1.40
735	765	0.898320	TGCCTGAGAGTAACCTGAGC	59.102	55.000	0.00	0.00	0.00	4.26
1315	1367	4.387026	TTCACCCTGGAAGATGAAACAT	57.613	40.909	0.00	0.00	34.07	2.71
1448	1502	5.927954	AAAAACTGCACCATGCTTAATTG	57.072	34.783	2.02	0.00	45.31	2.32
1499	1554	6.161526	AGCTAAAGGGGTCCTATTTTTATGGA	59.838	38.462	0.00	0.00	31.13	3.41
1501	1556	6.265422	CCAGCTAAAGGGGTCCTATTTTTATG	59.735	42.308	0.00	0.00	31.13	1.90
1519	1574	2.126228	CGAACGGTCGCCAGCTAA	60.126	61.111	11.19	0.00	41.08	3.09
1585	1785	3.421919	AAACAAATGCCATCCCCAAAG	57.578	42.857	0.00	0.00	0.00	2.77
1641	1861	2.468831	GCCACTCGATCAAGATCTGAC	58.531	52.381	0.00	0.00	36.69	3.51
1676	1897	4.722700	CGCCAGGAACACCCCCAG	62.723	72.222	0.00	0.00	34.66	4.45
2040	2267	0.107361	ACGCAAAGGTATACCCTGGC	60.107	55.000	18.65	13.91	45.47	4.85
2049	2276	1.626321	TCTGGAATGGACGCAAAGGTA	59.374	47.619	0.00	0.00	0.00	3.08
2086	2313	1.204941	ACTGGCCAGTCGATGAGTTAC	59.795	52.381	33.20	0.00	36.92	2.50
2140	2367	1.599071	TCATTCCATTCGCGATGAAGC	59.401	47.619	10.88	0.00	40.65	3.86
2193	2420	3.084039	AGGTGGCTTCACATACATGTTG	58.916	45.455	2.30	5.06	42.91	3.33
2202	2429	0.535780	CAGCAGAAGGTGGCTTCACA	60.536	55.000	0.00	0.00	42.91	3.58
2253	2480	3.426568	GCACGTCTTGCCTGCCTC	61.427	66.667	0.00	0.00	46.63	4.70
2276	2505	0.401738	ACAAGGGAGCAGCTTTAGCA	59.598	50.000	0.00	0.00	45.16	3.49
2290	2519	1.134729	ACAAGCAACCAAAGCACAAGG	60.135	47.619	0.00	0.00	0.00	3.61
2302	2531	3.268013	ACGTAGCAATGAACAAGCAAC	57.732	42.857	0.00	0.00	0.00	4.17
2445	2693	7.326789	ACAAAAACGATAATGCAATTGACAGAG	59.673	33.333	10.34	0.00	36.99	3.35
2485	2733	0.109597	GTCCCTTTGCAATGTCAGCG	60.110	55.000	0.00	0.00	33.85	5.18
2545	3178	4.625742	ACACGTTAGATTGTCCGAAGATTG	59.374	41.667	0.00	0.00	0.00	2.67
2607	3240	5.911378	AATTCTCTCTGCAGGGAAATTTC	57.089	39.130	18.91	9.83	42.74	2.17
2651	3346	4.810790	AGTACAACTTGACGAGATGGAAG	58.189	43.478	5.08	0.00	32.79	3.46
2671	3366	9.939424	ACTCTTATATTAGTTTACAGAGGGAGT	57.061	33.333	0.00	0.00	32.21	3.85
2673	3368	9.710818	ACACTCTTATATTAGTTTACAGAGGGA	57.289	33.333	2.59	0.00	34.50	4.20
2724	3419	7.760340	CCCTCCGTAAACTAATATAAGAGCATC	59.240	40.741	0.00	0.00	0.00	3.91
2725	3420	7.453752	TCCCTCCGTAAACTAATATAAGAGCAT	59.546	37.037	0.00	0.00	0.00	3.79
2726	3421	6.779049	TCCCTCCGTAAACTAATATAAGAGCA	59.221	38.462	0.00	0.00	0.00	4.26
2727	3422	7.039853	ACTCCCTCCGTAAACTAATATAAGAGC	60.040	40.741	0.00	0.00	0.00	4.09
2728	3423	8.406730	ACTCCCTCCGTAAACTAATATAAGAG	57.593	38.462	0.00	0.00	0.00	2.85
2729	3424	9.289782	GTACTCCCTCCGTAAACTAATATAAGA	57.710	37.037	0.00	0.00	0.00	2.10
2730	3425	9.071276	TGTACTCCCTCCGTAAACTAATATAAG	57.929	37.037	0.00	0.00	0.00	1.73
2731	3426	8.850156	GTGTACTCCCTCCGTAAACTAATATAA	58.150	37.037	0.00	0.00	0.00	0.98
2732	3427	8.220559	AGTGTACTCCCTCCGTAAACTAATATA	58.779	37.037	0.00	0.00	34.49	0.86
2733	3428	7.014038	CAGTGTACTCCCTCCGTAAACTAATAT	59.986	40.741	0.00	0.00	34.10	1.28
2734	3429	6.319658	CAGTGTACTCCCTCCGTAAACTAATA	59.680	42.308	0.00	0.00	34.10	0.98
2735	3430	5.126707	CAGTGTACTCCCTCCGTAAACTAAT	59.873	44.000	0.00	0.00	34.10	1.73
2736	3431	4.460382	CAGTGTACTCCCTCCGTAAACTAA	59.540	45.833	0.00	0.00	34.10	2.24
2737	3432	4.012374	CAGTGTACTCCCTCCGTAAACTA	58.988	47.826	0.00	0.00	34.10	2.24
2738	3433	2.824341	CAGTGTACTCCCTCCGTAAACT	59.176	50.000	0.00	0.00	36.17	2.66
2739	3434	2.560105	ACAGTGTACTCCCTCCGTAAAC	59.440	50.000	0.00	0.00	0.00	2.01
2740	3435	2.880443	ACAGTGTACTCCCTCCGTAAA	58.120	47.619	0.00	0.00	0.00	2.01
2741	3436	2.592102	ACAGTGTACTCCCTCCGTAA	57.408	50.000	0.00	0.00	0.00	3.18
2742	3437	2.592102	AACAGTGTACTCCCTCCGTA	57.408	50.000	0.00	0.00	0.00	4.02
2743	3438	2.165998	GTAACAGTGTACTCCCTCCGT	58.834	52.381	0.00	0.00	0.00	4.69
2744	3439	1.131883	CGTAACAGTGTACTCCCTCCG	59.868	57.143	0.00	0.00	0.00	4.63
2745	3440	1.135170	GCGTAACAGTGTACTCCCTCC	60.135	57.143	0.00	0.00	0.00	4.30
2746	3441	1.135170	GGCGTAACAGTGTACTCCCTC	60.135	57.143	0.00	0.00	0.00	4.30
2747	3442	0.893447	GGCGTAACAGTGTACTCCCT	59.107	55.000	0.00	0.00	0.00	4.20
2748	3443	0.604578	TGGCGTAACAGTGTACTCCC	59.395	55.000	0.00	0.00	29.28	4.30
2749	3444	2.268298	CATGGCGTAACAGTGTACTCC	58.732	52.381	0.00	0.85	30.79	3.85
2750	3445	2.666508	CACATGGCGTAACAGTGTACTC	59.333	50.000	0.00	0.00	0.00	2.59
2751	3446	2.683968	CACATGGCGTAACAGTGTACT	58.316	47.619	0.00	0.00	0.00	2.73
2769	3464	4.382320	TCCCGCCGTGGTTAGCAC	62.382	66.667	4.26	4.26	35.15	4.40
2782	3477	1.806542	CTGTTGAACTTGATGGTCCCG	59.193	52.381	0.00	0.00	0.00	5.14
2783	3478	1.541588	GCTGTTGAACTTGATGGTCCC	59.458	52.381	0.00	0.00	0.00	4.46
2784	3479	2.485814	GAGCTGTTGAACTTGATGGTCC	59.514	50.000	0.00	0.00	0.00	4.46
2938	3643	2.176546	CCAACCGTCAATGCAGCG	59.823	61.111	0.00	0.00	0.00	5.18
2951	3656	1.272212	CCAGTTTACCATGTGCCCAAC	59.728	52.381	0.00	0.00	0.00	3.77
2979	3684	0.790814	GCAGGTCGTCAGTTGTTAGC	59.209	55.000	0.00	0.00	0.00	3.09
2981	3686	1.684450	TCAGCAGGTCGTCAGTTGTTA	59.316	47.619	0.00	0.00	0.00	2.41
2983	3688	0.681733	ATCAGCAGGTCGTCAGTTGT	59.318	50.000	0.00	0.00	0.00	3.32
2987	3692	1.863454	GCATTATCAGCAGGTCGTCAG	59.137	52.381	0.00	0.00	0.00	3.51
2994	3699	1.563435	CGAGCCGCATTATCAGCAGG	61.563	60.000	0.00	0.00	0.00	4.85
3007	3712	3.805307	ACGACAGAGAGCGAGCCG	61.805	66.667	0.00	0.00	0.00	5.52
3021	3726	0.669318	GCCATCAAAGACGACCACGA	60.669	55.000	0.00	0.00	42.66	4.35
3032	3737	1.659622	CGCCATGCTGAGCCATCAAA	61.660	55.000	0.23	0.00	34.23	2.69
3033	3738	2.116533	CGCCATGCTGAGCCATCAA	61.117	57.895	0.23	0.00	34.23	2.57

Based at the University of Bristol with support from BBSRC.

AutoCloner maintained by Alex Coulton.