Multiple sequence alignment - TraesCS7B01G294400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G294400 chr7B 100.000 2384 0 0 1 2384 531223368 531220985 0.000000e+00 4403.0
1 TraesCS7B01G294400 chr7B 88.732 639 32 11 697 1332 531179854 531180455 0.000000e+00 745.0
2 TraesCS7B01G294400 chr7B 79.098 1220 140 68 584 1757 530869502 530870652 0.000000e+00 734.0
3 TraesCS7B01G294400 chr7D 90.244 1107 62 23 637 1716 501610394 501609307 0.000000e+00 1404.0
4 TraesCS7B01G294400 chr7D 86.732 716 54 22 632 1332 501778237 501777548 0.000000e+00 758.0
5 TraesCS7B01G294400 chr7D 84.845 772 60 35 674 1430 501599638 501600367 0.000000e+00 725.0
6 TraesCS7B01G294400 chr7D 78.077 1227 126 77 584 1752 501508511 501509652 0.000000e+00 643.0
7 TraesCS7B01G294400 chr7D 88.491 530 41 15 1866 2384 501609145 501608625 7.240000e-175 623.0
8 TraesCS7B01G294400 chr7A 84.636 1126 75 32 556 1637 568696138 568695067 0.000000e+00 1031.0
9 TraesCS7B01G294400 chr7A 85.941 818 43 32 561 1332 569112994 569112203 0.000000e+00 808.0
10 TraesCS7B01G294400 chr7A 89.547 574 47 8 765 1332 568129596 568130162 0.000000e+00 715.0
11 TraesCS7B01G294400 chr7A 89.405 538 33 9 1863 2384 568694780 568694251 0.000000e+00 656.0
12 TraesCS7B01G294400 chr7A 91.620 358 27 1 975 1332 568579791 568580145 2.130000e-135 492.0
13 TraesCS7B01G294400 chr7A 87.281 228 18 9 1620 1845 568695051 568694833 1.410000e-62 250.0
14 TraesCS7B01G294400 chr3D 81.609 174 24 6 326 494 35441205 35441035 1.150000e-28 137.0
15 TraesCS7B01G294400 chr3D 79.798 99 18 2 177 274 48899515 48899418 1.180000e-08 71.3
16 TraesCS7B01G294400 chr4B 89.333 75 6 2 335 408 594850854 594850781 2.520000e-15 93.5
17 TraesCS7B01G294400 chr1A 83.505 97 15 1 177 273 100243476 100243381 3.260000e-14 89.8
18 TraesCS7B01G294400 chr1A 80.645 93 16 2 177 268 68615855 68615764 1.180000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G294400 chr7B 531220985 531223368 2383 True 4403.000000 4403 100.000000 1 2384 1 chr7B.!!$R1 2383
1 TraesCS7B01G294400 chr7B 531179854 531180455 601 False 745.000000 745 88.732000 697 1332 1 chr7B.!!$F2 635
2 TraesCS7B01G294400 chr7B 530869502 530870652 1150 False 734.000000 734 79.098000 584 1757 1 chr7B.!!$F1 1173
3 TraesCS7B01G294400 chr7D 501608625 501610394 1769 True 1013.500000 1404 89.367500 637 2384 2 chr7D.!!$R2 1747
4 TraesCS7B01G294400 chr7D 501777548 501778237 689 True 758.000000 758 86.732000 632 1332 1 chr7D.!!$R1 700
5 TraesCS7B01G294400 chr7D 501599638 501600367 729 False 725.000000 725 84.845000 674 1430 1 chr7D.!!$F2 756
6 TraesCS7B01G294400 chr7D 501508511 501509652 1141 False 643.000000 643 78.077000 584 1752 1 chr7D.!!$F1 1168
7 TraesCS7B01G294400 chr7A 569112203 569112994 791 True 808.000000 808 85.941000 561 1332 1 chr7A.!!$R1 771
8 TraesCS7B01G294400 chr7A 568129596 568130162 566 False 715.000000 715 89.547000 765 1332 1 chr7A.!!$F1 567
9 TraesCS7B01G294400 chr7A 568694251 568696138 1887 True 645.666667 1031 87.107333 556 2384 3 chr7A.!!$R2 1828

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
170 171 0.030235 CGACGTTCACTCCACACTGA 59.97 55.0 0.0 0.0 0.0 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1716 2038 0.179134 GTCTCCCAGAATGACGACGG 60.179 60.0 0.0 0.0 39.69 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 8.455682 TGACAAGTTTATAAGGAAAAATAGCCG 58.544 33.333 0.00 0.00 0.00 5.52
27 28 7.768240 ACAAGTTTATAAGGAAAAATAGCCGG 58.232 34.615 0.00 0.00 0.00 6.13
28 29 7.612633 ACAAGTTTATAAGGAAAAATAGCCGGA 59.387 33.333 5.05 0.00 0.00 5.14
29 30 8.463607 CAAGTTTATAAGGAAAAATAGCCGGAA 58.536 33.333 5.05 0.00 0.00 4.30
30 31 7.993101 AGTTTATAAGGAAAAATAGCCGGAAC 58.007 34.615 5.05 0.00 0.00 3.62
31 32 6.947644 TTATAAGGAAAAATAGCCGGAACC 57.052 37.500 5.05 0.00 0.00 3.62
32 33 1.746470 AGGAAAAATAGCCGGAACCG 58.254 50.000 5.05 6.25 39.44 4.44
33 34 1.279846 AGGAAAAATAGCCGGAACCGA 59.720 47.619 15.07 0.00 42.83 4.69
34 35 2.092592 AGGAAAAATAGCCGGAACCGAT 60.093 45.455 15.07 5.59 42.83 4.18
35 36 3.135167 AGGAAAAATAGCCGGAACCGATA 59.865 43.478 15.07 7.59 42.83 2.92
36 37 4.070009 GGAAAAATAGCCGGAACCGATAT 58.930 43.478 15.07 9.44 42.83 1.63
37 38 4.517832 GGAAAAATAGCCGGAACCGATATT 59.482 41.667 15.07 14.19 42.83 1.28
38 39 5.009310 GGAAAAATAGCCGGAACCGATATTT 59.991 40.000 15.07 18.26 42.83 1.40
39 40 6.205270 GGAAAAATAGCCGGAACCGATATTTA 59.795 38.462 22.99 9.17 42.83 1.40
40 41 6.549912 AAAATAGCCGGAACCGATATTTAC 57.450 37.500 22.99 5.99 42.83 2.01
41 42 2.144482 AGCCGGAACCGATATTTACG 57.856 50.000 15.07 0.00 42.83 3.18
42 43 0.509929 GCCGGAACCGATATTTACGC 59.490 55.000 15.07 3.17 42.83 4.42
43 44 1.855513 CCGGAACCGATATTTACGCA 58.144 50.000 15.07 0.00 42.83 5.24
44 45 1.523934 CCGGAACCGATATTTACGCAC 59.476 52.381 15.07 0.00 42.83 5.34
45 46 2.195096 CGGAACCGATATTTACGCACA 58.805 47.619 7.53 0.00 42.83 4.57
46 47 2.034339 CGGAACCGATATTTACGCACAC 60.034 50.000 7.53 0.00 42.83 3.82
47 48 2.286025 GGAACCGATATTTACGCACACC 59.714 50.000 0.00 0.00 0.00 4.16
48 49 2.676632 ACCGATATTTACGCACACCA 57.323 45.000 0.00 0.00 0.00 4.17
49 50 2.546778 ACCGATATTTACGCACACCAG 58.453 47.619 0.00 0.00 0.00 4.00
50 51 1.260561 CCGATATTTACGCACACCAGC 59.739 52.381 0.00 0.00 0.00 4.85
51 52 1.260561 CGATATTTACGCACACCAGCC 59.739 52.381 0.00 0.00 0.00 4.85
52 53 2.285083 GATATTTACGCACACCAGCCA 58.715 47.619 0.00 0.00 0.00 4.75
53 54 1.732941 TATTTACGCACACCAGCCAG 58.267 50.000 0.00 0.00 0.00 4.85
54 55 1.586154 ATTTACGCACACCAGCCAGC 61.586 55.000 0.00 0.00 0.00 4.85
55 56 4.697756 TACGCACACCAGCCAGCC 62.698 66.667 0.00 0.00 0.00 4.85
58 59 3.755628 GCACACCAGCCAGCCATG 61.756 66.667 0.00 0.00 0.00 3.66
59 60 2.034532 CACACCAGCCAGCCATGA 59.965 61.111 0.00 0.00 0.00 3.07
60 61 2.034687 ACACCAGCCAGCCATGAC 59.965 61.111 0.00 0.00 0.00 3.06
61 62 3.129502 CACCAGCCAGCCATGACG 61.130 66.667 0.00 0.00 0.00 4.35
63 64 4.790962 CCAGCCAGCCATGACGCT 62.791 66.667 0.00 0.00 40.65 5.07
83 84 2.499214 GGCACCAACCAAGTCAACA 58.501 52.632 0.00 0.00 0.00 3.33
84 85 0.820871 GGCACCAACCAAGTCAACAA 59.179 50.000 0.00 0.00 0.00 2.83
85 86 1.470805 GGCACCAACCAAGTCAACAAC 60.471 52.381 0.00 0.00 0.00 3.32
86 87 1.203523 GCACCAACCAAGTCAACAACA 59.796 47.619 0.00 0.00 0.00 3.33
87 88 2.874849 CACCAACCAAGTCAACAACAC 58.125 47.619 0.00 0.00 0.00 3.32
88 89 2.491693 CACCAACCAAGTCAACAACACT 59.508 45.455 0.00 0.00 0.00 3.55
89 90 2.491693 ACCAACCAAGTCAACAACACTG 59.508 45.455 0.00 0.00 0.00 3.66
90 91 2.491693 CCAACCAAGTCAACAACACTGT 59.508 45.455 0.00 0.00 37.39 3.55
91 92 3.427503 CCAACCAAGTCAACAACACTGTC 60.428 47.826 0.00 0.00 33.45 3.51
92 93 3.066291 ACCAAGTCAACAACACTGTCA 57.934 42.857 0.00 0.00 33.45 3.58
93 94 2.747446 ACCAAGTCAACAACACTGTCAC 59.253 45.455 0.00 0.00 33.45 3.67
94 95 2.097466 CCAAGTCAACAACACTGTCACC 59.903 50.000 0.00 0.00 33.45 4.02
95 96 2.038387 AGTCAACAACACTGTCACCC 57.962 50.000 0.00 0.00 33.45 4.61
96 97 1.280710 AGTCAACAACACTGTCACCCA 59.719 47.619 0.00 0.00 33.45 4.51
97 98 2.088423 GTCAACAACACTGTCACCCAA 58.912 47.619 0.00 0.00 33.45 4.12
98 99 2.097466 GTCAACAACACTGTCACCCAAG 59.903 50.000 0.00 0.00 33.45 3.61
99 100 2.091541 CAACAACACTGTCACCCAAGT 58.908 47.619 0.00 0.00 33.45 3.16
100 101 1.750193 ACAACACTGTCACCCAAGTG 58.250 50.000 1.41 1.41 46.00 3.16
114 115 5.767816 ACCCAAGTGACAAAAGATAACAC 57.232 39.130 0.00 0.00 0.00 3.32
115 116 4.583073 ACCCAAGTGACAAAAGATAACACC 59.417 41.667 0.00 0.00 32.76 4.16
116 117 4.022329 CCCAAGTGACAAAAGATAACACCC 60.022 45.833 0.00 0.00 32.76 4.61
117 118 4.827284 CCAAGTGACAAAAGATAACACCCT 59.173 41.667 0.00 0.00 32.76 4.34
118 119 6.001460 CCAAGTGACAAAAGATAACACCCTA 58.999 40.000 0.00 0.00 32.76 3.53
119 120 6.072673 CCAAGTGACAAAAGATAACACCCTAC 60.073 42.308 0.00 0.00 32.76 3.18
120 121 6.182507 AGTGACAAAAGATAACACCCTACA 57.817 37.500 0.00 0.00 32.76 2.74
121 122 6.597562 AGTGACAAAAGATAACACCCTACAA 58.402 36.000 0.00 0.00 32.76 2.41
122 123 6.710744 AGTGACAAAAGATAACACCCTACAAG 59.289 38.462 0.00 0.00 32.76 3.16
123 124 6.708949 GTGACAAAAGATAACACCCTACAAGA 59.291 38.462 0.00 0.00 0.00 3.02
124 125 6.708949 TGACAAAAGATAACACCCTACAAGAC 59.291 38.462 0.00 0.00 0.00 3.01
125 126 6.597562 ACAAAAGATAACACCCTACAAGACA 58.402 36.000 0.00 0.00 0.00 3.41
126 127 7.057894 ACAAAAGATAACACCCTACAAGACAA 58.942 34.615 0.00 0.00 0.00 3.18
127 128 7.558444 ACAAAAGATAACACCCTACAAGACAAA 59.442 33.333 0.00 0.00 0.00 2.83
128 129 8.410141 CAAAAGATAACACCCTACAAGACAAAA 58.590 33.333 0.00 0.00 0.00 2.44
129 130 7.506328 AAGATAACACCCTACAAGACAAAAC 57.494 36.000 0.00 0.00 0.00 2.43
130 131 6.838382 AGATAACACCCTACAAGACAAAACT 58.162 36.000 0.00 0.00 0.00 2.66
131 132 7.970102 AGATAACACCCTACAAGACAAAACTA 58.030 34.615 0.00 0.00 0.00 2.24
132 133 8.095169 AGATAACACCCTACAAGACAAAACTAG 58.905 37.037 0.00 0.00 0.00 2.57
133 134 4.969484 ACACCCTACAAGACAAAACTAGG 58.031 43.478 0.00 0.00 0.00 3.02
134 135 3.751698 CACCCTACAAGACAAAACTAGGC 59.248 47.826 0.00 0.00 0.00 3.93
135 136 3.651423 ACCCTACAAGACAAAACTAGGCT 59.349 43.478 0.00 0.00 0.00 4.58
136 137 4.254492 CCCTACAAGACAAAACTAGGCTC 58.746 47.826 0.00 0.00 0.00 4.70
137 138 4.262894 CCCTACAAGACAAAACTAGGCTCA 60.263 45.833 0.00 0.00 0.00 4.26
138 139 4.932200 CCTACAAGACAAAACTAGGCTCAG 59.068 45.833 0.00 0.00 0.00 3.35
139 140 3.744660 ACAAGACAAAACTAGGCTCAGG 58.255 45.455 0.00 0.00 0.00 3.86
140 141 3.391296 ACAAGACAAAACTAGGCTCAGGA 59.609 43.478 0.00 0.00 0.00 3.86
141 142 3.971245 AGACAAAACTAGGCTCAGGAG 57.029 47.619 0.00 0.00 0.00 3.69
159 160 4.717629 CAGCCGCTCCGACGTTCA 62.718 66.667 0.00 0.00 0.00 3.18
160 161 4.719369 AGCCGCTCCGACGTTCAC 62.719 66.667 0.00 0.00 0.00 3.18
161 162 4.719369 GCCGCTCCGACGTTCACT 62.719 66.667 0.00 0.00 0.00 3.41
162 163 2.504244 CCGCTCCGACGTTCACTC 60.504 66.667 0.00 0.00 0.00 3.51
163 164 2.504244 CGCTCCGACGTTCACTCC 60.504 66.667 0.00 0.00 0.00 3.85
164 165 2.649034 GCTCCGACGTTCACTCCA 59.351 61.111 0.00 0.00 0.00 3.86
165 166 1.733399 GCTCCGACGTTCACTCCAC 60.733 63.158 0.00 0.00 0.00 4.02
166 167 1.658114 CTCCGACGTTCACTCCACA 59.342 57.895 0.00 0.00 0.00 4.17
167 168 0.663568 CTCCGACGTTCACTCCACAC 60.664 60.000 0.00 0.00 0.00 3.82
168 169 1.105167 TCCGACGTTCACTCCACACT 61.105 55.000 0.00 0.00 0.00 3.55
169 170 0.939577 CCGACGTTCACTCCACACTG 60.940 60.000 0.00 0.00 0.00 3.66
170 171 0.030235 CGACGTTCACTCCACACTGA 59.970 55.000 0.00 0.00 0.00 3.41
171 172 1.488527 GACGTTCACTCCACACTGAC 58.511 55.000 0.00 0.00 0.00 3.51
172 173 0.104304 ACGTTCACTCCACACTGACC 59.896 55.000 0.00 0.00 0.00 4.02
173 174 0.600255 CGTTCACTCCACACTGACCC 60.600 60.000 0.00 0.00 0.00 4.46
174 175 0.759346 GTTCACTCCACACTGACCCT 59.241 55.000 0.00 0.00 0.00 4.34
175 176 1.968493 GTTCACTCCACACTGACCCTA 59.032 52.381 0.00 0.00 0.00 3.53
176 177 2.367567 GTTCACTCCACACTGACCCTAA 59.632 50.000 0.00 0.00 0.00 2.69
177 178 2.248248 TCACTCCACACTGACCCTAAG 58.752 52.381 0.00 0.00 0.00 2.18
178 179 2.158370 TCACTCCACACTGACCCTAAGA 60.158 50.000 0.00 0.00 0.00 2.10
179 180 2.232452 CACTCCACACTGACCCTAAGAG 59.768 54.545 0.00 0.00 0.00 2.85
180 181 2.158295 ACTCCACACTGACCCTAAGAGT 60.158 50.000 0.00 0.00 0.00 3.24
181 182 3.075582 ACTCCACACTGACCCTAAGAGTA 59.924 47.826 0.00 0.00 31.84 2.59
182 183 4.087182 CTCCACACTGACCCTAAGAGTAA 58.913 47.826 0.00 0.00 0.00 2.24
183 184 4.087182 TCCACACTGACCCTAAGAGTAAG 58.913 47.826 0.00 0.00 0.00 2.34
184 185 3.833070 CCACACTGACCCTAAGAGTAAGT 59.167 47.826 0.00 0.00 28.14 2.24
185 186 5.014858 CCACACTGACCCTAAGAGTAAGTA 58.985 45.833 0.00 0.00 27.22 2.24
186 187 5.479375 CCACACTGACCCTAAGAGTAAGTAA 59.521 44.000 0.00 0.00 27.22 2.24
187 188 6.014840 CCACACTGACCCTAAGAGTAAGTAAA 60.015 42.308 0.00 0.00 27.22 2.01
188 189 7.439381 CACACTGACCCTAAGAGTAAGTAAAA 58.561 38.462 0.00 0.00 27.22 1.52
189 190 8.095169 CACACTGACCCTAAGAGTAAGTAAAAT 58.905 37.037 0.00 0.00 27.22 1.82
190 191 9.317827 ACACTGACCCTAAGAGTAAGTAAAATA 57.682 33.333 0.00 0.00 27.22 1.40
211 212 9.905713 AAAATAAGATGACATAAGAAGGCTACA 57.094 29.630 0.00 0.00 0.00 2.74
212 213 9.905713 AAATAAGATGACATAAGAAGGCTACAA 57.094 29.630 0.00 0.00 0.00 2.41
213 214 9.553064 AATAAGATGACATAAGAAGGCTACAAG 57.447 33.333 0.00 0.00 0.00 3.16
214 215 5.923204 AGATGACATAAGAAGGCTACAAGG 58.077 41.667 0.00 0.00 0.00 3.61
215 216 5.663106 AGATGACATAAGAAGGCTACAAGGA 59.337 40.000 0.00 0.00 0.00 3.36
216 217 5.086104 TGACATAAGAAGGCTACAAGGAC 57.914 43.478 0.00 0.00 0.00 3.85
217 218 4.777896 TGACATAAGAAGGCTACAAGGACT 59.222 41.667 0.00 0.00 0.00 3.85
218 219 5.955959 TGACATAAGAAGGCTACAAGGACTA 59.044 40.000 0.00 0.00 0.00 2.59
219 220 6.439375 TGACATAAGAAGGCTACAAGGACTAA 59.561 38.462 0.00 0.00 0.00 2.24
220 221 7.038587 TGACATAAGAAGGCTACAAGGACTAAA 60.039 37.037 0.00 0.00 0.00 1.85
221 222 7.686434 ACATAAGAAGGCTACAAGGACTAAAA 58.314 34.615 0.00 0.00 0.00 1.52
222 223 8.329502 ACATAAGAAGGCTACAAGGACTAAAAT 58.670 33.333 0.00 0.00 0.00 1.82
223 224 9.832445 CATAAGAAGGCTACAAGGACTAAAATA 57.168 33.333 0.00 0.00 0.00 1.40
226 227 8.738645 AGAAGGCTACAAGGACTAAAATATTG 57.261 34.615 0.00 0.00 0.00 1.90
227 228 8.329502 AGAAGGCTACAAGGACTAAAATATTGT 58.670 33.333 0.00 0.00 37.77 2.71
228 229 9.609346 GAAGGCTACAAGGACTAAAATATTGTA 57.391 33.333 0.00 0.00 35.77 2.41
258 259 7.751768 ACTTAGTTGGAGGAAAGAGAAAATG 57.248 36.000 0.00 0.00 0.00 2.32
259 260 7.518188 ACTTAGTTGGAGGAAAGAGAAAATGA 58.482 34.615 0.00 0.00 0.00 2.57
260 261 7.663493 ACTTAGTTGGAGGAAAGAGAAAATGAG 59.337 37.037 0.00 0.00 0.00 2.90
261 262 6.192970 AGTTGGAGGAAAGAGAAAATGAGA 57.807 37.500 0.00 0.00 0.00 3.27
262 263 6.237154 AGTTGGAGGAAAGAGAAAATGAGAG 58.763 40.000 0.00 0.00 0.00 3.20
263 264 6.043706 AGTTGGAGGAAAGAGAAAATGAGAGA 59.956 38.462 0.00 0.00 0.00 3.10
264 265 6.047511 TGGAGGAAAGAGAAAATGAGAGAG 57.952 41.667 0.00 0.00 0.00 3.20
265 266 4.875536 GGAGGAAAGAGAAAATGAGAGAGC 59.124 45.833 0.00 0.00 0.00 4.09
266 267 5.486526 GAGGAAAGAGAAAATGAGAGAGCA 58.513 41.667 0.00 0.00 0.00 4.26
267 268 5.490159 AGGAAAGAGAAAATGAGAGAGCAG 58.510 41.667 0.00 0.00 0.00 4.24
268 269 5.248020 AGGAAAGAGAAAATGAGAGAGCAGA 59.752 40.000 0.00 0.00 0.00 4.26
269 270 5.581874 GGAAAGAGAAAATGAGAGAGCAGAG 59.418 44.000 0.00 0.00 0.00 3.35
270 271 5.999205 AAGAGAAAATGAGAGAGCAGAGA 57.001 39.130 0.00 0.00 0.00 3.10
271 272 5.999205 AGAGAAAATGAGAGAGCAGAGAA 57.001 39.130 0.00 0.00 0.00 2.87
272 273 5.969423 AGAGAAAATGAGAGAGCAGAGAAG 58.031 41.667 0.00 0.00 0.00 2.85
273 274 4.506758 AGAAAATGAGAGAGCAGAGAAGC 58.493 43.478 0.00 0.00 0.00 3.86
274 275 3.977134 AAATGAGAGAGCAGAGAAGCA 57.023 42.857 0.00 0.00 36.85 3.91
275 276 3.530265 AATGAGAGAGCAGAGAAGCAG 57.470 47.619 0.00 0.00 36.85 4.24
276 277 2.212812 TGAGAGAGCAGAGAAGCAGA 57.787 50.000 0.00 0.00 36.85 4.26
277 278 1.818060 TGAGAGAGCAGAGAAGCAGAC 59.182 52.381 0.00 0.00 36.85 3.51
278 279 2.094675 GAGAGAGCAGAGAAGCAGACT 58.905 52.381 0.00 0.00 36.85 3.24
279 280 3.278574 GAGAGAGCAGAGAAGCAGACTA 58.721 50.000 0.00 0.00 36.85 2.59
280 281 3.885297 GAGAGAGCAGAGAAGCAGACTAT 59.115 47.826 0.00 0.00 36.85 2.12
281 282 4.280819 AGAGAGCAGAGAAGCAGACTATT 58.719 43.478 0.00 0.00 36.85 1.73
282 283 4.098349 AGAGAGCAGAGAAGCAGACTATTG 59.902 45.833 0.00 0.00 36.85 1.90
283 284 4.022603 AGAGCAGAGAAGCAGACTATTGA 58.977 43.478 0.00 0.00 36.85 2.57
284 285 4.650588 AGAGCAGAGAAGCAGACTATTGAT 59.349 41.667 0.00 0.00 36.85 2.57
285 286 5.129155 AGAGCAGAGAAGCAGACTATTGATT 59.871 40.000 0.00 0.00 36.85 2.57
286 287 6.323482 AGAGCAGAGAAGCAGACTATTGATTA 59.677 38.462 0.00 0.00 36.85 1.75
287 288 6.279882 AGCAGAGAAGCAGACTATTGATTAC 58.720 40.000 0.00 0.00 36.85 1.89
288 289 6.098124 AGCAGAGAAGCAGACTATTGATTACT 59.902 38.462 0.00 0.00 36.85 2.24
289 290 7.286546 AGCAGAGAAGCAGACTATTGATTACTA 59.713 37.037 0.00 0.00 36.85 1.82
290 291 7.923344 GCAGAGAAGCAGACTATTGATTACTAA 59.077 37.037 0.00 0.00 0.00 2.24
291 292 9.979578 CAGAGAAGCAGACTATTGATTACTAAT 57.020 33.333 0.00 0.00 0.00 1.73
318 319 9.523168 AAATTGAGAGAGTAGTAGTAGTCAGTT 57.477 33.333 13.71 0.45 31.67 3.16
319 320 7.908827 TTGAGAGAGTAGTAGTAGTCAGTTG 57.091 40.000 13.71 0.00 31.67 3.16
320 321 5.875910 TGAGAGAGTAGTAGTAGTCAGTTGC 59.124 44.000 13.71 1.25 31.67 4.17
321 322 5.806818 AGAGAGTAGTAGTAGTCAGTTGCA 58.193 41.667 13.71 0.00 31.67 4.08
322 323 6.239396 AGAGAGTAGTAGTAGTCAGTTGCAA 58.761 40.000 13.71 0.00 31.67 4.08
323 324 6.373216 AGAGAGTAGTAGTAGTCAGTTGCAAG 59.627 42.308 13.71 0.00 31.67 4.01
324 325 6.005198 AGAGTAGTAGTAGTCAGTTGCAAGT 58.995 40.000 13.71 0.00 31.67 3.16
325 326 6.149807 AGAGTAGTAGTAGTCAGTTGCAAGTC 59.850 42.308 13.71 0.00 31.67 3.01
326 327 6.005198 AGTAGTAGTAGTCAGTTGCAAGTCT 58.995 40.000 3.08 2.17 0.00 3.24
327 328 5.127693 AGTAGTAGTCAGTTGCAAGTCTG 57.872 43.478 3.08 7.28 0.00 3.51
338 339 1.571460 CAAGTCTGCAACACGAGCC 59.429 57.895 0.00 0.00 0.00 4.70
339 340 1.598130 AAGTCTGCAACACGAGCCC 60.598 57.895 0.00 0.00 0.00 5.19
340 341 2.031163 GTCTGCAACACGAGCCCT 59.969 61.111 0.00 0.00 0.00 5.19
341 342 1.185618 AGTCTGCAACACGAGCCCTA 61.186 55.000 0.00 0.00 0.00 3.53
342 343 0.320421 GTCTGCAACACGAGCCCTAA 60.320 55.000 0.00 0.00 0.00 2.69
343 344 0.037326 TCTGCAACACGAGCCCTAAG 60.037 55.000 0.00 0.00 0.00 2.18
344 345 0.037326 CTGCAACACGAGCCCTAAGA 60.037 55.000 0.00 0.00 0.00 2.10
345 346 0.320421 TGCAACACGAGCCCTAAGAC 60.320 55.000 0.00 0.00 0.00 3.01
346 347 1.019805 GCAACACGAGCCCTAAGACC 61.020 60.000 0.00 0.00 0.00 3.85
347 348 0.391263 CAACACGAGCCCTAAGACCC 60.391 60.000 0.00 0.00 0.00 4.46
348 349 0.544595 AACACGAGCCCTAAGACCCT 60.545 55.000 0.00 0.00 0.00 4.34
349 350 0.544595 ACACGAGCCCTAAGACCCTT 60.545 55.000 0.00 0.00 0.00 3.95
350 351 0.613777 CACGAGCCCTAAGACCCTTT 59.386 55.000 0.00 0.00 0.00 3.11
351 352 0.613777 ACGAGCCCTAAGACCCTTTG 59.386 55.000 0.00 0.00 0.00 2.77
352 353 0.613777 CGAGCCCTAAGACCCTTTGT 59.386 55.000 0.00 0.00 0.00 2.83
353 354 1.676014 CGAGCCCTAAGACCCTTTGTG 60.676 57.143 0.00 0.00 0.00 3.33
354 355 1.628846 GAGCCCTAAGACCCTTTGTGA 59.371 52.381 0.00 0.00 0.00 3.58
355 356 1.630878 AGCCCTAAGACCCTTTGTGAG 59.369 52.381 0.00 0.00 0.00 3.51
356 357 1.340114 GCCCTAAGACCCTTTGTGAGG 60.340 57.143 0.00 0.00 45.86 3.86
357 358 1.985895 CCCTAAGACCCTTTGTGAGGT 59.014 52.381 0.00 0.00 44.71 3.85
358 359 2.375509 CCCTAAGACCCTTTGTGAGGTT 59.624 50.000 0.00 0.00 44.71 3.50
359 360 3.412386 CCTAAGACCCTTTGTGAGGTTG 58.588 50.000 0.00 0.00 44.71 3.77
360 361 3.181443 CCTAAGACCCTTTGTGAGGTTGT 60.181 47.826 0.00 0.00 44.71 3.32
361 362 4.041198 CCTAAGACCCTTTGTGAGGTTGTA 59.959 45.833 0.00 0.00 44.71 2.41
362 363 4.513406 AAGACCCTTTGTGAGGTTGTAA 57.487 40.909 0.00 0.00 44.71 2.41
363 364 4.086706 AGACCCTTTGTGAGGTTGTAAG 57.913 45.455 0.00 0.00 44.71 2.34
364 365 3.146847 GACCCTTTGTGAGGTTGTAAGG 58.853 50.000 0.00 0.00 44.71 2.69
365 366 2.512476 ACCCTTTGTGAGGTTGTAAGGT 59.488 45.455 0.00 0.00 44.71 3.50
366 367 2.884639 CCCTTTGTGAGGTTGTAAGGTG 59.115 50.000 0.00 0.00 44.71 4.00
367 368 2.884639 CCTTTGTGAGGTTGTAAGGTGG 59.115 50.000 0.00 0.00 40.95 4.61
368 369 2.649531 TTGTGAGGTTGTAAGGTGGG 57.350 50.000 0.00 0.00 0.00 4.61
369 370 1.809133 TGTGAGGTTGTAAGGTGGGA 58.191 50.000 0.00 0.00 0.00 4.37
370 371 1.418637 TGTGAGGTTGTAAGGTGGGAC 59.581 52.381 0.00 0.00 0.00 4.46
371 372 1.418637 GTGAGGTTGTAAGGTGGGACA 59.581 52.381 0.00 0.00 0.00 4.02
372 373 2.128535 TGAGGTTGTAAGGTGGGACAA 58.871 47.619 0.00 0.00 44.16 3.18
415 416 9.095065 ACATATTTAAAACTTACTACTCTGCGG 57.905 33.333 0.00 0.00 0.00 5.69
416 417 6.980051 ATTTAAAACTTACTACTCTGCGGG 57.020 37.500 0.00 0.00 0.00 6.13
417 418 5.726980 TTAAAACTTACTACTCTGCGGGA 57.273 39.130 0.00 0.00 0.00 5.14
418 419 4.820894 AAAACTTACTACTCTGCGGGAT 57.179 40.909 0.00 0.00 0.00 3.85
419 420 5.927281 AAAACTTACTACTCTGCGGGATA 57.073 39.130 0.00 0.00 0.00 2.59
420 421 6.481434 AAAACTTACTACTCTGCGGGATAT 57.519 37.500 0.00 0.00 0.00 1.63
421 422 5.455056 AACTTACTACTCTGCGGGATATG 57.545 43.478 0.00 0.00 0.00 1.78
422 423 4.726583 ACTTACTACTCTGCGGGATATGA 58.273 43.478 0.00 0.00 0.00 2.15
423 424 4.762765 ACTTACTACTCTGCGGGATATGAG 59.237 45.833 0.00 0.00 0.00 2.90
424 425 2.520069 ACTACTCTGCGGGATATGAGG 58.480 52.381 0.00 0.00 0.00 3.86
425 426 2.158445 ACTACTCTGCGGGATATGAGGT 60.158 50.000 0.00 0.00 0.00 3.85
426 427 1.794714 ACTCTGCGGGATATGAGGTT 58.205 50.000 0.00 0.00 0.00 3.50
427 428 1.414181 ACTCTGCGGGATATGAGGTTG 59.586 52.381 0.00 0.00 0.00 3.77
428 429 0.106708 TCTGCGGGATATGAGGTTGC 59.893 55.000 0.00 0.00 0.00 4.17
429 430 0.107456 CTGCGGGATATGAGGTTGCT 59.893 55.000 0.00 0.00 0.00 3.91
430 431 0.179048 TGCGGGATATGAGGTTGCTG 60.179 55.000 0.00 0.00 0.00 4.41
431 432 0.179045 GCGGGATATGAGGTTGCTGT 60.179 55.000 0.00 0.00 0.00 4.40
432 433 1.070134 GCGGGATATGAGGTTGCTGTA 59.930 52.381 0.00 0.00 0.00 2.74
433 434 2.868044 GCGGGATATGAGGTTGCTGTAG 60.868 54.545 0.00 0.00 0.00 2.74
434 435 2.628178 CGGGATATGAGGTTGCTGTAGA 59.372 50.000 0.00 0.00 0.00 2.59
435 436 3.259374 CGGGATATGAGGTTGCTGTAGAT 59.741 47.826 0.00 0.00 0.00 1.98
436 437 4.573900 GGGATATGAGGTTGCTGTAGATG 58.426 47.826 0.00 0.00 0.00 2.90
437 438 4.284490 GGGATATGAGGTTGCTGTAGATGA 59.716 45.833 0.00 0.00 0.00 2.92
438 439 5.233988 GGATATGAGGTTGCTGTAGATGAC 58.766 45.833 0.00 0.00 0.00 3.06
439 440 5.221521 GGATATGAGGTTGCTGTAGATGACA 60.222 44.000 0.00 0.00 36.35 3.58
440 441 4.767578 ATGAGGTTGCTGTAGATGACAT 57.232 40.909 0.00 0.00 37.45 3.06
441 442 3.865446 TGAGGTTGCTGTAGATGACATG 58.135 45.455 0.00 0.00 37.45 3.21
442 443 2.611292 GAGGTTGCTGTAGATGACATGC 59.389 50.000 0.00 0.00 37.45 4.06
443 444 1.672881 GGTTGCTGTAGATGACATGCC 59.327 52.381 0.00 0.00 37.45 4.40
444 445 2.358957 GTTGCTGTAGATGACATGCCA 58.641 47.619 0.00 0.00 37.45 4.92
445 446 2.749076 GTTGCTGTAGATGACATGCCAA 59.251 45.455 0.00 0.00 37.45 4.52
446 447 3.286329 TGCTGTAGATGACATGCCAAT 57.714 42.857 0.00 0.00 37.45 3.16
447 448 3.623703 TGCTGTAGATGACATGCCAATT 58.376 40.909 0.00 0.00 37.45 2.32
448 449 3.628942 TGCTGTAGATGACATGCCAATTC 59.371 43.478 0.00 0.00 37.45 2.17
449 450 3.004106 GCTGTAGATGACATGCCAATTCC 59.996 47.826 0.00 0.00 37.45 3.01
450 451 4.458397 CTGTAGATGACATGCCAATTCCT 58.542 43.478 0.00 0.00 37.45 3.36
451 452 4.858850 TGTAGATGACATGCCAATTCCTT 58.141 39.130 0.00 0.00 31.20 3.36
452 453 6.000246 TGTAGATGACATGCCAATTCCTTA 58.000 37.500 0.00 0.00 31.20 2.69
453 454 6.604171 TGTAGATGACATGCCAATTCCTTAT 58.396 36.000 0.00 0.00 31.20 1.73
454 455 7.744733 TGTAGATGACATGCCAATTCCTTATA 58.255 34.615 0.00 0.00 31.20 0.98
455 456 7.879677 TGTAGATGACATGCCAATTCCTTATAG 59.120 37.037 0.00 0.00 31.20 1.31
456 457 5.709164 AGATGACATGCCAATTCCTTATAGC 59.291 40.000 0.00 0.00 0.00 2.97
457 458 4.144297 TGACATGCCAATTCCTTATAGCC 58.856 43.478 0.00 0.00 0.00 3.93
458 459 3.149196 ACATGCCAATTCCTTATAGCCG 58.851 45.455 0.00 0.00 0.00 5.52
459 460 3.181445 ACATGCCAATTCCTTATAGCCGA 60.181 43.478 0.00 0.00 0.00 5.54
460 461 2.846193 TGCCAATTCCTTATAGCCGAC 58.154 47.619 0.00 0.00 0.00 4.79
461 462 2.152016 GCCAATTCCTTATAGCCGACC 58.848 52.381 0.00 0.00 0.00 4.79
462 463 2.413837 CCAATTCCTTATAGCCGACCG 58.586 52.381 0.00 0.00 0.00 4.79
463 464 2.224209 CCAATTCCTTATAGCCGACCGT 60.224 50.000 0.00 0.00 0.00 4.83
464 465 3.463944 CAATTCCTTATAGCCGACCGTT 58.536 45.455 0.00 0.00 0.00 4.44
465 466 2.589798 TTCCTTATAGCCGACCGTTG 57.410 50.000 0.00 0.00 0.00 4.10
466 467 1.766494 TCCTTATAGCCGACCGTTGA 58.234 50.000 0.00 0.00 0.00 3.18
467 468 2.313317 TCCTTATAGCCGACCGTTGAT 58.687 47.619 0.00 0.00 0.00 2.57
468 469 2.696707 TCCTTATAGCCGACCGTTGATT 59.303 45.455 0.00 0.00 0.00 2.57
469 470 2.800544 CCTTATAGCCGACCGTTGATTG 59.199 50.000 0.00 0.00 0.00 2.67
470 471 3.454375 CTTATAGCCGACCGTTGATTGT 58.546 45.455 0.00 0.00 0.00 2.71
471 472 4.500205 CCTTATAGCCGACCGTTGATTGTA 60.500 45.833 0.00 0.00 0.00 2.41
472 473 2.282701 TAGCCGACCGTTGATTGTAC 57.717 50.000 0.00 0.00 0.00 2.90
473 474 0.606604 AGCCGACCGTTGATTGTACT 59.393 50.000 0.00 0.00 0.00 2.73
474 475 1.820519 AGCCGACCGTTGATTGTACTA 59.179 47.619 0.00 0.00 0.00 1.82
475 476 2.429610 AGCCGACCGTTGATTGTACTAT 59.570 45.455 0.00 0.00 0.00 2.12
476 477 3.118884 AGCCGACCGTTGATTGTACTATT 60.119 43.478 0.00 0.00 0.00 1.73
477 478 4.098349 AGCCGACCGTTGATTGTACTATTA 59.902 41.667 0.00 0.00 0.00 0.98
478 479 4.986659 GCCGACCGTTGATTGTACTATTAT 59.013 41.667 0.00 0.00 0.00 1.28
479 480 5.464389 GCCGACCGTTGATTGTACTATTATT 59.536 40.000 0.00 0.00 0.00 1.40
480 481 6.642131 GCCGACCGTTGATTGTACTATTATTA 59.358 38.462 0.00 0.00 0.00 0.98
481 482 7.169645 GCCGACCGTTGATTGTACTATTATTAA 59.830 37.037 0.00 0.00 0.00 1.40
482 483 8.482429 CCGACCGTTGATTGTACTATTATTAAC 58.518 37.037 0.00 0.00 0.00 2.01
483 484 8.482429 CGACCGTTGATTGTACTATTATTAACC 58.518 37.037 0.00 0.00 0.00 2.85
484 485 9.316730 GACCGTTGATTGTACTATTATTAACCA 57.683 33.333 0.00 0.00 0.00 3.67
485 486 9.841295 ACCGTTGATTGTACTATTATTAACCAT 57.159 29.630 0.00 0.00 0.00 3.55
487 488 9.594038 CGTTGATTGTACTATTATTAACCATGC 57.406 33.333 0.00 0.00 0.00 4.06
493 494 9.764363 TTGTACTATTATTAACCATGCTCTGAG 57.236 33.333 0.00 0.00 0.00 3.35
494 495 8.367911 TGTACTATTATTAACCATGCTCTGAGG 58.632 37.037 6.83 0.00 0.00 3.86
495 496 6.234177 ACTATTATTAACCATGCTCTGAGGC 58.766 40.000 6.83 0.00 0.00 4.70
496 497 1.959042 ATTAACCATGCTCTGAGGCG 58.041 50.000 6.83 0.00 34.52 5.52
497 498 0.744414 TTAACCATGCTCTGAGGCGC 60.744 55.000 6.83 0.00 34.52 6.53
498 499 2.593468 TAACCATGCTCTGAGGCGCC 62.593 60.000 21.89 21.89 34.52 6.53
499 500 4.172512 CCATGCTCTGAGGCGCCT 62.173 66.667 33.48 33.48 34.52 5.52
500 501 2.895865 CATGCTCTGAGGCGCCTG 60.896 66.667 38.41 21.81 34.52 4.85
501 502 3.397439 ATGCTCTGAGGCGCCTGT 61.397 61.111 38.41 12.13 34.52 4.00
502 503 3.677284 ATGCTCTGAGGCGCCTGTG 62.677 63.158 38.41 25.56 34.52 3.66
503 504 4.385405 GCTCTGAGGCGCCTGTGT 62.385 66.667 38.41 10.61 0.00 3.72
504 505 3.006756 GCTCTGAGGCGCCTGTGTA 62.007 63.158 38.41 16.30 0.00 2.90
505 506 1.153745 CTCTGAGGCGCCTGTGTAC 60.154 63.158 38.41 20.29 0.00 2.90
506 507 2.125512 CTGAGGCGCCTGTGTACC 60.126 66.667 38.41 19.44 0.00 3.34
507 508 3.665675 CTGAGGCGCCTGTGTACCC 62.666 68.421 38.41 18.60 0.00 3.69
508 509 3.391382 GAGGCGCCTGTGTACCCT 61.391 66.667 38.41 6.10 0.00 4.34
509 510 2.928396 AGGCGCCTGTGTACCCTT 60.928 61.111 32.33 0.00 0.00 3.95
510 511 2.436115 GGCGCCTGTGTACCCTTC 60.436 66.667 22.15 0.00 0.00 3.46
511 512 2.663196 GCGCCTGTGTACCCTTCT 59.337 61.111 0.00 0.00 0.00 2.85
512 513 1.003718 GCGCCTGTGTACCCTTCTT 60.004 57.895 0.00 0.00 0.00 2.52
513 514 1.298859 GCGCCTGTGTACCCTTCTTG 61.299 60.000 0.00 0.00 0.00 3.02
514 515 1.298859 CGCCTGTGTACCCTTCTTGC 61.299 60.000 0.00 0.00 0.00 4.01
515 516 0.036875 GCCTGTGTACCCTTCTTGCT 59.963 55.000 0.00 0.00 0.00 3.91
516 517 1.545651 GCCTGTGTACCCTTCTTGCTT 60.546 52.381 0.00 0.00 0.00 3.91
517 518 2.863809 CCTGTGTACCCTTCTTGCTTT 58.136 47.619 0.00 0.00 0.00 3.51
518 519 3.809324 GCCTGTGTACCCTTCTTGCTTTA 60.809 47.826 0.00 0.00 0.00 1.85
519 520 4.003648 CCTGTGTACCCTTCTTGCTTTAG 58.996 47.826 0.00 0.00 0.00 1.85
520 521 4.003648 CTGTGTACCCTTCTTGCTTTAGG 58.996 47.826 0.00 0.00 0.00 2.69
521 522 2.747989 GTGTACCCTTCTTGCTTTAGGC 59.252 50.000 0.00 0.00 42.22 3.93
535 536 5.254339 GCTTTAGGCACAGATTATTTGCT 57.746 39.130 0.00 0.00 41.35 3.91
536 537 5.277047 GCTTTAGGCACAGATTATTTGCTC 58.723 41.667 0.00 0.00 41.35 4.26
537 538 5.734503 GCTTTAGGCACAGATTATTTGCTCC 60.735 44.000 0.00 0.00 41.35 4.70
538 539 3.370840 AGGCACAGATTATTTGCTCCA 57.629 42.857 0.00 0.00 36.46 3.86
539 540 3.285484 AGGCACAGATTATTTGCTCCAG 58.715 45.455 0.00 0.00 36.46 3.86
540 541 3.054139 AGGCACAGATTATTTGCTCCAGA 60.054 43.478 0.00 0.00 36.46 3.86
541 542 3.696051 GGCACAGATTATTTGCTCCAGAA 59.304 43.478 0.00 0.00 36.46 3.02
542 543 4.439289 GGCACAGATTATTTGCTCCAGAAC 60.439 45.833 0.00 0.00 36.46 3.01
543 544 4.439289 GCACAGATTATTTGCTCCAGAACC 60.439 45.833 0.00 0.00 33.26 3.62
544 545 4.946157 CACAGATTATTTGCTCCAGAACCT 59.054 41.667 0.00 0.00 0.00 3.50
545 546 5.416952 CACAGATTATTTGCTCCAGAACCTT 59.583 40.000 0.00 0.00 0.00 3.50
546 547 6.599244 CACAGATTATTTGCTCCAGAACCTTA 59.401 38.462 0.00 0.00 0.00 2.69
547 548 6.825721 ACAGATTATTTGCTCCAGAACCTTAG 59.174 38.462 0.00 0.00 0.00 2.18
548 549 7.050377 CAGATTATTTGCTCCAGAACCTTAGA 58.950 38.462 0.00 0.00 0.00 2.10
549 550 7.718753 CAGATTATTTGCTCCAGAACCTTAGAT 59.281 37.037 0.00 0.00 0.00 1.98
550 551 7.718753 AGATTATTTGCTCCAGAACCTTAGATG 59.281 37.037 0.00 0.00 0.00 2.90
551 552 4.908601 TTTGCTCCAGAACCTTAGATGA 57.091 40.909 0.00 0.00 0.00 2.92
552 553 4.908601 TTGCTCCAGAACCTTAGATGAA 57.091 40.909 0.00 0.00 0.00 2.57
553 554 5.441718 TTGCTCCAGAACCTTAGATGAAT 57.558 39.130 0.00 0.00 0.00 2.57
554 555 5.028549 TGCTCCAGAACCTTAGATGAATC 57.971 43.478 0.00 0.00 0.00 2.52
558 559 5.734720 TCCAGAACCTTAGATGAATCACAC 58.265 41.667 0.00 0.00 0.00 3.82
618 619 1.532794 ATCCAAGCGGCCAAAACCA 60.533 52.632 2.24 0.00 0.00 3.67
619 620 1.118356 ATCCAAGCGGCCAAAACCAA 61.118 50.000 2.24 0.00 0.00 3.67
620 621 1.300853 CCAAGCGGCCAAAACCAAG 60.301 57.895 2.24 0.00 0.00 3.61
621 622 1.955663 CAAGCGGCCAAAACCAAGC 60.956 57.895 2.24 0.00 0.00 4.01
622 623 3.498401 AAGCGGCCAAAACCAAGCG 62.498 57.895 2.24 0.00 0.00 4.68
625 626 3.615709 GGCCAAAACCAAGCGGCT 61.616 61.111 0.00 0.00 44.27 5.52
626 627 2.356194 GCCAAAACCAAGCGGCTG 60.356 61.111 1.81 0.00 41.50 4.85
627 628 2.356194 CCAAAACCAAGCGGCTGC 60.356 61.111 10.33 10.33 43.24 5.25
628 629 2.416678 CAAAACCAAGCGGCTGCA 59.583 55.556 21.93 0.00 46.23 4.41
629 630 1.662446 CAAAACCAAGCGGCTGCAG 60.662 57.895 21.93 10.11 46.23 4.41
630 631 2.127232 AAAACCAAGCGGCTGCAGT 61.127 52.632 21.93 11.26 46.23 4.40
672 693 1.069636 CGCAGCAACAGAAAAGAGACC 60.070 52.381 0.00 0.00 0.00 3.85
690 721 1.590259 CGCCAAACCCAACCAAACG 60.590 57.895 0.00 0.00 0.00 3.60
709 751 0.960861 GAAACCCAGCAGTAGCACCC 60.961 60.000 0.00 0.00 45.49 4.61
794 889 1.645710 TTCTTTTCCCCGCTCTCTCT 58.354 50.000 0.00 0.00 0.00 3.10
795 890 1.187087 TCTTTTCCCCGCTCTCTCTC 58.813 55.000 0.00 0.00 0.00 3.20
796 891 1.190643 CTTTTCCCCGCTCTCTCTCT 58.809 55.000 0.00 0.00 0.00 3.10
797 892 1.136110 CTTTTCCCCGCTCTCTCTCTC 59.864 57.143 0.00 0.00 0.00 3.20
798 893 0.333312 TTTCCCCGCTCTCTCTCTCT 59.667 55.000 0.00 0.00 0.00 3.10
799 894 0.106918 TTCCCCGCTCTCTCTCTCTC 60.107 60.000 0.00 0.00 0.00 3.20
800 895 0.986019 TCCCCGCTCTCTCTCTCTCT 60.986 60.000 0.00 0.00 0.00 3.10
801 896 0.535102 CCCCGCTCTCTCTCTCTCTC 60.535 65.000 0.00 0.00 0.00 3.20
857 971 0.467290 CTCCCTTCCCTCTCCTCTCG 60.467 65.000 0.00 0.00 0.00 4.04
858 972 1.456705 CCCTTCCCTCTCCTCTCGG 60.457 68.421 0.00 0.00 0.00 4.63
908 1035 1.871080 ACAAGCGAGAAACCACTCTG 58.129 50.000 0.00 0.00 35.06 3.35
909 1036 0.514691 CAAGCGAGAAACCACTCTGC 59.485 55.000 0.00 0.00 37.02 4.26
910 1037 0.106708 AAGCGAGAAACCACTCTGCA 59.893 50.000 0.00 0.00 38.15 4.41
911 1038 0.601311 AGCGAGAAACCACTCTGCAC 60.601 55.000 0.00 0.00 38.15 4.57
912 1039 0.601311 GCGAGAAACCACTCTGCACT 60.601 55.000 0.00 0.00 36.88 4.40
934 1062 4.250431 GCACGCCCACACACACAC 62.250 66.667 0.00 0.00 0.00 3.82
935 1063 2.821810 CACGCCCACACACACACA 60.822 61.111 0.00 0.00 0.00 3.72
936 1064 2.822255 ACGCCCACACACACACAC 60.822 61.111 0.00 0.00 0.00 3.82
937 1065 2.821810 CGCCCACACACACACACA 60.822 61.111 0.00 0.00 0.00 3.72
938 1066 2.798009 GCCCACACACACACACAC 59.202 61.111 0.00 0.00 0.00 3.82
939 1067 2.043405 GCCCACACACACACACACA 61.043 57.895 0.00 0.00 0.00 3.72
940 1068 1.800032 CCCACACACACACACACAC 59.200 57.895 0.00 0.00 0.00 3.82
965 1132 2.666317 GAAGAGGAAGAGAGAGAGGGG 58.334 57.143 0.00 0.00 0.00 4.79
1450 1700 1.212935 GCCTCTAGGATTTTCCCTGCA 59.787 52.381 0.00 0.00 37.19 4.41
1470 1720 4.827284 TGCATGATCTGTCCGTAGAATCTA 59.173 41.667 0.00 0.00 0.00 1.98
1471 1721 5.157781 GCATGATCTGTCCGTAGAATCTAC 58.842 45.833 10.26 10.26 0.00 2.59
1472 1722 5.278512 GCATGATCTGTCCGTAGAATCTACA 60.279 44.000 19.16 2.58 0.00 2.74
1625 1932 7.528481 TTGCATCTTCATTCAATAAATGCAC 57.472 32.000 6.62 0.00 45.30 4.57
1691 2003 2.300066 GCGCTTTTCGTTTGGGTGC 61.300 57.895 0.00 0.00 41.07 5.01
1695 2007 3.471244 TTTTCGTTTGGGTGCGCGG 62.471 57.895 8.83 0.00 0.00 6.46
1716 2038 3.922850 GGTAGTATAAAATACTCGCCCGC 59.077 47.826 2.93 0.00 0.00 6.13
1761 2083 1.873591 CTCTTGGAAGTTTCACCGTGG 59.126 52.381 0.00 0.00 0.00 4.94
1798 2120 1.265236 GCTCTCCCATCCTGATCGAT 58.735 55.000 0.00 0.00 0.00 3.59
1799 2121 1.204467 GCTCTCCCATCCTGATCGATC 59.796 57.143 18.72 18.72 0.00 3.69
1800 2122 1.472082 CTCTCCCATCCTGATCGATCG 59.528 57.143 20.03 9.36 0.00 3.69
1803 2125 0.676184 CCCATCCTGATCGATCGTGT 59.324 55.000 20.03 5.18 0.00 4.49
1805 2127 2.483714 CCCATCCTGATCGATCGTGTTT 60.484 50.000 20.03 1.75 0.00 2.83
1806 2128 2.541346 CCATCCTGATCGATCGTGTTTG 59.459 50.000 20.03 12.94 0.00 2.93
1807 2129 2.293677 TCCTGATCGATCGTGTTTGG 57.706 50.000 20.03 13.86 0.00 3.28
1808 2130 1.548719 TCCTGATCGATCGTGTTTGGT 59.451 47.619 20.03 0.00 0.00 3.67
1809 2131 1.927174 CCTGATCGATCGTGTTTGGTC 59.073 52.381 20.03 4.23 0.00 4.02
1810 2132 2.417379 CCTGATCGATCGTGTTTGGTCT 60.417 50.000 20.03 0.00 0.00 3.85
1812 2134 1.324736 GATCGATCGTGTTTGGTCTGC 59.675 52.381 15.94 0.00 0.00 4.26
1813 2135 0.317160 TCGATCGTGTTTGGTCTGCT 59.683 50.000 15.94 0.00 0.00 4.24
1816 2138 2.415491 CGATCGTGTTTGGTCTGCTAGA 60.415 50.000 7.03 0.00 0.00 2.43
1817 2139 2.724977 TCGTGTTTGGTCTGCTAGAG 57.275 50.000 0.00 0.00 0.00 2.43
1818 2140 1.961394 TCGTGTTTGGTCTGCTAGAGT 59.039 47.619 0.00 0.00 0.00 3.24
1819 2141 3.151554 TCGTGTTTGGTCTGCTAGAGTA 58.848 45.455 0.00 0.00 0.00 2.59
1835 2157 6.183360 TGCTAGAGTAAAAAGTTTGTGCGAAA 60.183 34.615 0.00 0.00 0.00 3.46
1842 2164 0.591170 AGTTTGTGCGAAATGACGGG 59.409 50.000 0.00 0.00 0.00 5.28
1845 2167 3.053291 GTGCGAAATGACGGGGCA 61.053 61.111 0.00 0.00 0.00 5.36
1846 2168 2.281831 TGCGAAATGACGGGGCAA 60.282 55.556 0.00 0.00 0.00 4.52
1848 2170 2.332654 GCGAAATGACGGGGCAACT 61.333 57.895 0.00 0.00 0.00 3.16
1849 2171 1.022451 GCGAAATGACGGGGCAACTA 61.022 55.000 0.00 0.00 0.00 2.24
1851 2173 0.733150 GAAATGACGGGGCAACTAGC 59.267 55.000 0.00 0.00 44.65 3.42
1852 2174 0.328258 AAATGACGGGGCAACTAGCT 59.672 50.000 0.00 0.00 44.79 3.32
1853 2175 0.392998 AATGACGGGGCAACTAGCTG 60.393 55.000 0.00 0.00 44.79 4.24
1854 2176 2.820037 GACGGGGCAACTAGCTGC 60.820 66.667 9.71 9.71 44.79 5.25
1860 2182 3.136791 GCAACTAGCTGCCTGGCC 61.137 66.667 17.53 0.00 41.15 5.36
1886 2246 3.378742 TGGTTAAGTGCATGTTGAAACGT 59.621 39.130 0.00 0.00 0.00 3.99
1900 2260 5.163933 TGTTGAAACGTACACAGTGAACTTC 60.164 40.000 7.81 3.54 0.00 3.01
1901 2261 3.548668 TGAAACGTACACAGTGAACTTCG 59.451 43.478 7.81 6.78 0.00 3.79
1902 2262 3.425577 AACGTACACAGTGAACTTCGA 57.574 42.857 7.81 0.00 0.00 3.71
1929 2290 2.540516 TGTCCATGTTGAAACGTACACG 59.459 45.455 0.00 0.00 46.33 4.49
1949 2310 2.206750 GGTACACAGTGAAAACGAGCA 58.793 47.619 7.81 0.00 0.00 4.26
1953 2314 3.758300 ACACAGTGAAAACGAGCAAAAG 58.242 40.909 7.81 0.00 0.00 2.27
1954 2315 3.190535 ACACAGTGAAAACGAGCAAAAGT 59.809 39.130 7.81 0.00 0.00 2.66
1955 2316 4.393680 ACACAGTGAAAACGAGCAAAAGTA 59.606 37.500 7.81 0.00 0.00 2.24
1956 2317 5.065988 ACACAGTGAAAACGAGCAAAAGTAT 59.934 36.000 7.81 0.00 0.00 2.12
1957 2318 6.259167 ACACAGTGAAAACGAGCAAAAGTATA 59.741 34.615 7.81 0.00 0.00 1.47
1958 2319 6.792250 CACAGTGAAAACGAGCAAAAGTATAG 59.208 38.462 0.00 0.00 0.00 1.31
1979 2355 2.369983 AGGATTACATGGGGTGCATG 57.630 50.000 0.00 0.00 36.22 4.06
1980 2356 0.675633 GGATTACATGGGGTGCATGC 59.324 55.000 11.82 11.82 33.61 4.06
2145 2521 5.244402 TGCATTTGGAAATGGAGGCTATATG 59.756 40.000 12.81 0.00 44.54 1.78
2158 2534 2.484264 GGCTATATGCTTTTAGTGGGCG 59.516 50.000 0.00 0.00 42.39 6.13
2173 2549 1.275505 GGGCGCGTAGTACTTTTCTC 58.724 55.000 8.43 0.00 0.00 2.87
2252 2629 8.696374 TGTTAACAATGGTTTTCTGTTATCCAA 58.304 29.630 5.64 0.00 38.45 3.53
2310 2687 3.473625 TCCTCGTCTCCCTTTGTTTTTC 58.526 45.455 0.00 0.00 0.00 2.29
2348 2725 8.978874 TCTCATACACCTATAATTTGTTGCAT 57.021 30.769 0.00 0.00 0.00 3.96
2354 2731 6.150307 ACACCTATAATTTGTTGCATTCGTCA 59.850 34.615 0.00 0.00 0.00 4.35
2357 2734 7.094377 ACCTATAATTTGTTGCATTCGTCAGTT 60.094 33.333 0.00 0.00 0.00 3.16
2358 2735 7.429340 CCTATAATTTGTTGCATTCGTCAGTTC 59.571 37.037 0.00 0.00 0.00 3.01
2364 2741 4.975502 TGTTGCATTCGTCAGTTCATTTTC 59.024 37.500 0.00 0.00 0.00 2.29
2370 2747 1.798223 CGTCAGTTCATTTTCGGAGCA 59.202 47.619 0.00 0.00 0.00 4.26
2381 2758 2.437085 TTCGGAGCACATAGGAGAGA 57.563 50.000 0.00 0.00 0.00 3.10
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 8.455682 CGGCTATTTTTCCTTATAAACTTGTCA 58.544 33.333 0.00 0.00 0.00 3.58
1 2 7.913821 CCGGCTATTTTTCCTTATAAACTTGTC 59.086 37.037 0.00 0.00 0.00 3.18
2 3 7.612633 TCCGGCTATTTTTCCTTATAAACTTGT 59.387 33.333 0.00 0.00 0.00 3.16
3 4 7.992008 TCCGGCTATTTTTCCTTATAAACTTG 58.008 34.615 0.00 0.00 0.00 3.16
4 5 8.464404 GTTCCGGCTATTTTTCCTTATAAACTT 58.536 33.333 0.00 0.00 0.00 2.66
5 6 7.067859 GGTTCCGGCTATTTTTCCTTATAAACT 59.932 37.037 0.00 0.00 0.00 2.66
6 7 7.198390 GGTTCCGGCTATTTTTCCTTATAAAC 58.802 38.462 0.00 0.00 0.00 2.01
7 8 6.038492 CGGTTCCGGCTATTTTTCCTTATAAA 59.962 38.462 0.00 0.00 0.00 1.40
8 9 5.528320 CGGTTCCGGCTATTTTTCCTTATAA 59.472 40.000 0.00 0.00 0.00 0.98
9 10 5.058490 CGGTTCCGGCTATTTTTCCTTATA 58.942 41.667 0.00 0.00 0.00 0.98
10 11 3.881089 CGGTTCCGGCTATTTTTCCTTAT 59.119 43.478 0.00 0.00 0.00 1.73
11 12 3.055240 TCGGTTCCGGCTATTTTTCCTTA 60.055 43.478 11.37 0.00 0.00 2.69
12 13 2.089201 CGGTTCCGGCTATTTTTCCTT 58.911 47.619 0.00 0.00 0.00 3.36
13 14 1.279846 TCGGTTCCGGCTATTTTTCCT 59.720 47.619 11.37 0.00 0.00 3.36
14 15 1.741528 TCGGTTCCGGCTATTTTTCC 58.258 50.000 11.37 0.00 0.00 3.13
15 16 5.684550 AATATCGGTTCCGGCTATTTTTC 57.315 39.130 11.37 0.00 0.00 2.29
16 17 6.293027 CGTAAATATCGGTTCCGGCTATTTTT 60.293 38.462 23.30 15.10 33.87 1.94
17 18 5.178067 CGTAAATATCGGTTCCGGCTATTTT 59.822 40.000 23.30 14.68 33.87 1.82
18 19 4.687483 CGTAAATATCGGTTCCGGCTATTT 59.313 41.667 22.51 22.51 34.92 1.40
19 20 4.240096 CGTAAATATCGGTTCCGGCTATT 58.760 43.478 11.37 11.33 0.00 1.73
20 21 3.841643 CGTAAATATCGGTTCCGGCTAT 58.158 45.455 11.37 6.45 0.00 2.97
21 22 2.607771 GCGTAAATATCGGTTCCGGCTA 60.608 50.000 11.37 4.49 0.00 3.93
22 23 1.870993 GCGTAAATATCGGTTCCGGCT 60.871 52.381 11.37 2.41 0.00 5.52
23 24 0.509929 GCGTAAATATCGGTTCCGGC 59.490 55.000 11.37 0.70 0.00 6.13
24 25 1.523934 GTGCGTAAATATCGGTTCCGG 59.476 52.381 11.37 0.00 0.00 5.14
25 26 2.034339 GTGTGCGTAAATATCGGTTCCG 60.034 50.000 4.74 4.74 0.00 4.30
26 27 2.286025 GGTGTGCGTAAATATCGGTTCC 59.714 50.000 0.00 0.00 0.00 3.62
27 28 2.931325 TGGTGTGCGTAAATATCGGTTC 59.069 45.455 0.00 0.00 0.00 3.62
28 29 2.933906 CTGGTGTGCGTAAATATCGGTT 59.066 45.455 0.00 0.00 0.00 4.44
29 30 2.546778 CTGGTGTGCGTAAATATCGGT 58.453 47.619 0.00 0.00 0.00 4.69
30 31 1.260561 GCTGGTGTGCGTAAATATCGG 59.739 52.381 0.00 0.00 0.00 4.18
31 32 1.260561 GGCTGGTGTGCGTAAATATCG 59.739 52.381 0.00 0.00 0.00 2.92
32 33 2.285083 TGGCTGGTGTGCGTAAATATC 58.715 47.619 0.00 0.00 0.00 1.63
33 34 2.288666 CTGGCTGGTGTGCGTAAATAT 58.711 47.619 0.00 0.00 0.00 1.28
34 35 1.732941 CTGGCTGGTGTGCGTAAATA 58.267 50.000 0.00 0.00 0.00 1.40
35 36 1.586154 GCTGGCTGGTGTGCGTAAAT 61.586 55.000 0.00 0.00 0.00 1.40
36 37 2.258013 GCTGGCTGGTGTGCGTAAA 61.258 57.895 0.00 0.00 0.00 2.01
37 38 2.668212 GCTGGCTGGTGTGCGTAA 60.668 61.111 0.00 0.00 0.00 3.18
38 39 4.697756 GGCTGGCTGGTGTGCGTA 62.698 66.667 0.00 0.00 0.00 4.42
41 42 3.755628 CATGGCTGGCTGGTGTGC 61.756 66.667 2.00 0.00 0.00 4.57
42 43 2.034532 TCATGGCTGGCTGGTGTG 59.965 61.111 2.00 0.00 0.00 3.82
43 44 2.034687 GTCATGGCTGGCTGGTGT 59.965 61.111 2.00 0.00 0.00 4.16
44 45 3.129502 CGTCATGGCTGGCTGGTG 61.130 66.667 2.00 0.00 0.00 4.17
46 47 4.790962 AGCGTCATGGCTGGCTGG 62.791 66.667 2.00 0.00 42.86 4.85
54 55 4.720902 TGGTGCCCAGCGTCATGG 62.721 66.667 0.00 0.00 40.29 3.66
55 56 2.672651 TTGGTGCCCAGCGTCATG 60.673 61.111 0.00 0.00 33.81 3.07
56 57 2.672996 GTTGGTGCCCAGCGTCAT 60.673 61.111 0.00 0.00 33.81 3.06
57 58 4.947147 GGTTGGTGCCCAGCGTCA 62.947 66.667 2.82 0.00 35.54 4.35
58 59 4.947147 TGGTTGGTGCCCAGCGTC 62.947 66.667 2.82 0.00 35.54 5.19
59 60 4.514585 TTGGTTGGTGCCCAGCGT 62.515 61.111 2.82 0.00 35.54 5.07
60 61 3.673484 CTTGGTTGGTGCCCAGCG 61.673 66.667 2.82 0.00 35.54 5.18
61 62 2.521708 ACTTGGTTGGTGCCCAGC 60.522 61.111 0.36 0.36 33.81 4.85
62 63 0.754957 TTGACTTGGTTGGTGCCCAG 60.755 55.000 0.00 0.00 33.81 4.45
63 64 1.040339 GTTGACTTGGTTGGTGCCCA 61.040 55.000 0.00 0.00 0.00 5.36
64 65 1.040339 TGTTGACTTGGTTGGTGCCC 61.040 55.000 0.00 0.00 0.00 5.36
65 66 0.820871 TTGTTGACTTGGTTGGTGCC 59.179 50.000 0.00 0.00 0.00 5.01
66 67 1.203523 TGTTGTTGACTTGGTTGGTGC 59.796 47.619 0.00 0.00 0.00 5.01
67 68 2.491693 AGTGTTGTTGACTTGGTTGGTG 59.508 45.455 0.00 0.00 0.00 4.17
68 69 2.491693 CAGTGTTGTTGACTTGGTTGGT 59.508 45.455 0.00 0.00 0.00 3.67
69 70 2.491693 ACAGTGTTGTTGACTTGGTTGG 59.508 45.455 0.00 0.00 32.28 3.77
70 71 3.190327 TGACAGTGTTGTTGACTTGGTTG 59.810 43.478 0.00 0.00 37.76 3.77
71 72 3.190535 GTGACAGTGTTGTTGACTTGGTT 59.809 43.478 0.00 0.00 37.76 3.67
72 73 2.747446 GTGACAGTGTTGTTGACTTGGT 59.253 45.455 0.00 0.00 37.76 3.67
73 74 2.097466 GGTGACAGTGTTGTTGACTTGG 59.903 50.000 0.00 0.00 37.76 3.61
74 75 2.097466 GGGTGACAGTGTTGTTGACTTG 59.903 50.000 0.00 0.00 37.76 3.16
75 76 2.290641 TGGGTGACAGTGTTGTTGACTT 60.291 45.455 0.00 0.00 37.76 3.01
76 77 1.280710 TGGGTGACAGTGTTGTTGACT 59.719 47.619 0.00 0.00 37.76 3.41
77 78 1.745232 TGGGTGACAGTGTTGTTGAC 58.255 50.000 0.00 0.00 37.76 3.18
78 79 2.290641 ACTTGGGTGACAGTGTTGTTGA 60.291 45.455 0.00 0.00 37.76 3.18
79 80 2.091541 ACTTGGGTGACAGTGTTGTTG 58.908 47.619 0.00 0.00 37.76 3.33
80 81 2.091541 CACTTGGGTGACAGTGTTGTT 58.908 47.619 0.00 0.00 45.61 2.83
81 82 1.280710 TCACTTGGGTGACAGTGTTGT 59.719 47.619 0.00 0.00 46.19 3.32
82 83 2.036958 TCACTTGGGTGACAGTGTTG 57.963 50.000 0.00 0.00 46.19 3.33
91 92 5.507315 GGTGTTATCTTTTGTCACTTGGGTG 60.507 44.000 0.00 0.00 44.23 4.61
92 93 4.583073 GGTGTTATCTTTTGTCACTTGGGT 59.417 41.667 0.00 0.00 0.00 4.51
93 94 4.022329 GGGTGTTATCTTTTGTCACTTGGG 60.022 45.833 0.00 0.00 0.00 4.12
94 95 4.827284 AGGGTGTTATCTTTTGTCACTTGG 59.173 41.667 0.00 0.00 0.00 3.61
95 96 6.485313 TGTAGGGTGTTATCTTTTGTCACTTG 59.515 38.462 0.00 0.00 0.00 3.16
96 97 6.597562 TGTAGGGTGTTATCTTTTGTCACTT 58.402 36.000 0.00 0.00 0.00 3.16
97 98 6.182507 TGTAGGGTGTTATCTTTTGTCACT 57.817 37.500 0.00 0.00 0.00 3.41
98 99 6.708949 TCTTGTAGGGTGTTATCTTTTGTCAC 59.291 38.462 0.00 0.00 0.00 3.67
99 100 6.708949 GTCTTGTAGGGTGTTATCTTTTGTCA 59.291 38.462 0.00 0.00 0.00 3.58
100 101 6.708949 TGTCTTGTAGGGTGTTATCTTTTGTC 59.291 38.462 0.00 0.00 0.00 3.18
101 102 6.597562 TGTCTTGTAGGGTGTTATCTTTTGT 58.402 36.000 0.00 0.00 0.00 2.83
102 103 7.504924 TTGTCTTGTAGGGTGTTATCTTTTG 57.495 36.000 0.00 0.00 0.00 2.44
103 104 8.410912 GTTTTGTCTTGTAGGGTGTTATCTTTT 58.589 33.333 0.00 0.00 0.00 2.27
104 105 7.778382 AGTTTTGTCTTGTAGGGTGTTATCTTT 59.222 33.333 0.00 0.00 0.00 2.52
105 106 7.287810 AGTTTTGTCTTGTAGGGTGTTATCTT 58.712 34.615 0.00 0.00 0.00 2.40
106 107 6.838382 AGTTTTGTCTTGTAGGGTGTTATCT 58.162 36.000 0.00 0.00 0.00 1.98
107 108 7.333672 CCTAGTTTTGTCTTGTAGGGTGTTATC 59.666 40.741 0.00 0.00 0.00 1.75
108 109 7.166167 CCTAGTTTTGTCTTGTAGGGTGTTAT 58.834 38.462 0.00 0.00 0.00 1.89
109 110 6.527423 CCTAGTTTTGTCTTGTAGGGTGTTA 58.473 40.000 0.00 0.00 0.00 2.41
110 111 5.374071 CCTAGTTTTGTCTTGTAGGGTGTT 58.626 41.667 0.00 0.00 0.00 3.32
111 112 4.745783 GCCTAGTTTTGTCTTGTAGGGTGT 60.746 45.833 0.00 0.00 32.33 4.16
112 113 3.751698 GCCTAGTTTTGTCTTGTAGGGTG 59.248 47.826 0.00 0.00 32.33 4.61
113 114 3.651423 AGCCTAGTTTTGTCTTGTAGGGT 59.349 43.478 0.00 0.00 36.89 4.34
114 115 4.254492 GAGCCTAGTTTTGTCTTGTAGGG 58.746 47.826 0.00 0.00 32.33 3.53
115 116 4.894784 TGAGCCTAGTTTTGTCTTGTAGG 58.105 43.478 0.00 0.00 34.47 3.18
116 117 4.932200 CCTGAGCCTAGTTTTGTCTTGTAG 59.068 45.833 0.00 0.00 0.00 2.74
117 118 4.591498 TCCTGAGCCTAGTTTTGTCTTGTA 59.409 41.667 0.00 0.00 0.00 2.41
118 119 3.391296 TCCTGAGCCTAGTTTTGTCTTGT 59.609 43.478 0.00 0.00 0.00 3.16
119 120 3.999663 CTCCTGAGCCTAGTTTTGTCTTG 59.000 47.826 0.00 0.00 0.00 3.02
120 121 4.278975 CTCCTGAGCCTAGTTTTGTCTT 57.721 45.455 0.00 0.00 0.00 3.01
121 122 3.971245 CTCCTGAGCCTAGTTTTGTCT 57.029 47.619 0.00 0.00 0.00 3.41
142 143 4.717629 TGAACGTCGGAGCGGCTG 62.718 66.667 7.50 0.00 35.98 4.85
143 144 4.719369 GTGAACGTCGGAGCGGCT 62.719 66.667 0.00 0.00 35.98 5.52
144 145 4.719369 AGTGAACGTCGGAGCGGC 62.719 66.667 0.00 0.00 35.98 6.53
145 146 2.504244 GAGTGAACGTCGGAGCGG 60.504 66.667 0.00 0.00 35.98 5.52
146 147 2.504244 GGAGTGAACGTCGGAGCG 60.504 66.667 0.00 0.00 37.94 5.03
147 148 1.733399 GTGGAGTGAACGTCGGAGC 60.733 63.158 0.00 0.00 0.00 4.70
148 149 0.663568 GTGTGGAGTGAACGTCGGAG 60.664 60.000 0.00 0.00 0.00 4.63
149 150 1.105167 AGTGTGGAGTGAACGTCGGA 61.105 55.000 0.00 0.00 0.00 4.55
150 151 0.939577 CAGTGTGGAGTGAACGTCGG 60.940 60.000 0.00 0.00 0.00 4.79
151 152 0.030235 TCAGTGTGGAGTGAACGTCG 59.970 55.000 0.00 0.00 0.00 5.12
152 153 1.488527 GTCAGTGTGGAGTGAACGTC 58.511 55.000 0.00 0.00 33.14 4.34
153 154 0.104304 GGTCAGTGTGGAGTGAACGT 59.896 55.000 0.00 0.00 33.14 3.99
154 155 0.600255 GGGTCAGTGTGGAGTGAACG 60.600 60.000 0.00 0.00 39.83 3.95
155 156 0.759346 AGGGTCAGTGTGGAGTGAAC 59.241 55.000 0.00 0.00 38.39 3.18
156 157 2.391926 TAGGGTCAGTGTGGAGTGAA 57.608 50.000 0.00 0.00 33.14 3.18
157 158 2.158370 TCTTAGGGTCAGTGTGGAGTGA 60.158 50.000 0.00 0.00 0.00 3.41
158 159 2.232452 CTCTTAGGGTCAGTGTGGAGTG 59.768 54.545 0.00 0.00 0.00 3.51
159 160 2.158295 ACTCTTAGGGTCAGTGTGGAGT 60.158 50.000 0.00 0.00 0.00 3.85
160 161 2.530701 ACTCTTAGGGTCAGTGTGGAG 58.469 52.381 0.00 0.00 0.00 3.86
161 162 2.696526 ACTCTTAGGGTCAGTGTGGA 57.303 50.000 0.00 0.00 0.00 4.02
162 163 3.833070 ACTTACTCTTAGGGTCAGTGTGG 59.167 47.826 0.00 0.00 0.00 4.17
163 164 6.585695 TTACTTACTCTTAGGGTCAGTGTG 57.414 41.667 9.16 0.00 0.00 3.82
164 165 7.607615 TTTTACTTACTCTTAGGGTCAGTGT 57.392 36.000 9.16 0.00 0.00 3.55
185 186 9.905713 TGTAGCCTTCTTATGTCATCTTATTTT 57.094 29.630 0.00 0.00 0.00 1.82
186 187 9.905713 TTGTAGCCTTCTTATGTCATCTTATTT 57.094 29.630 0.00 0.00 0.00 1.40
187 188 9.553064 CTTGTAGCCTTCTTATGTCATCTTATT 57.447 33.333 0.00 0.00 0.00 1.40
188 189 8.153550 CCTTGTAGCCTTCTTATGTCATCTTAT 58.846 37.037 0.00 0.00 0.00 1.73
189 190 7.344612 TCCTTGTAGCCTTCTTATGTCATCTTA 59.655 37.037 0.00 0.00 0.00 2.10
190 191 6.156949 TCCTTGTAGCCTTCTTATGTCATCTT 59.843 38.462 0.00 0.00 0.00 2.40
191 192 5.663106 TCCTTGTAGCCTTCTTATGTCATCT 59.337 40.000 0.00 0.00 0.00 2.90
192 193 5.755861 GTCCTTGTAGCCTTCTTATGTCATC 59.244 44.000 0.00 0.00 0.00 2.92
193 194 5.426833 AGTCCTTGTAGCCTTCTTATGTCAT 59.573 40.000 0.00 0.00 0.00 3.06
194 195 4.777896 AGTCCTTGTAGCCTTCTTATGTCA 59.222 41.667 0.00 0.00 0.00 3.58
195 196 5.346181 AGTCCTTGTAGCCTTCTTATGTC 57.654 43.478 0.00 0.00 0.00 3.06
196 197 6.869206 TTAGTCCTTGTAGCCTTCTTATGT 57.131 37.500 0.00 0.00 0.00 2.29
197 198 8.738645 ATTTTAGTCCTTGTAGCCTTCTTATG 57.261 34.615 0.00 0.00 0.00 1.90
200 201 9.178758 CAATATTTTAGTCCTTGTAGCCTTCTT 57.821 33.333 0.00 0.00 0.00 2.52
201 202 8.329502 ACAATATTTTAGTCCTTGTAGCCTTCT 58.670 33.333 0.00 0.00 0.00 2.85
202 203 8.507524 ACAATATTTTAGTCCTTGTAGCCTTC 57.492 34.615 0.00 0.00 0.00 3.46
232 233 9.454859 CATTTTCTCTTTCCTCCAACTAAGTAT 57.545 33.333 0.00 0.00 0.00 2.12
233 234 8.656806 TCATTTTCTCTTTCCTCCAACTAAGTA 58.343 33.333 0.00 0.00 0.00 2.24
234 235 7.518188 TCATTTTCTCTTTCCTCCAACTAAGT 58.482 34.615 0.00 0.00 0.00 2.24
235 236 7.880195 TCTCATTTTCTCTTTCCTCCAACTAAG 59.120 37.037 0.00 0.00 0.00 2.18
236 237 7.745717 TCTCATTTTCTCTTTCCTCCAACTAA 58.254 34.615 0.00 0.00 0.00 2.24
237 238 7.235606 TCTCTCATTTTCTCTTTCCTCCAACTA 59.764 37.037 0.00 0.00 0.00 2.24
238 239 6.043706 TCTCTCATTTTCTCTTTCCTCCAACT 59.956 38.462 0.00 0.00 0.00 3.16
239 240 6.234177 TCTCTCATTTTCTCTTTCCTCCAAC 58.766 40.000 0.00 0.00 0.00 3.77
240 241 6.439636 TCTCTCATTTTCTCTTTCCTCCAA 57.560 37.500 0.00 0.00 0.00 3.53
241 242 5.570439 GCTCTCTCATTTTCTCTTTCCTCCA 60.570 44.000 0.00 0.00 0.00 3.86
242 243 4.875536 GCTCTCTCATTTTCTCTTTCCTCC 59.124 45.833 0.00 0.00 0.00 4.30
243 244 5.486526 TGCTCTCTCATTTTCTCTTTCCTC 58.513 41.667 0.00 0.00 0.00 3.71
244 245 5.248020 TCTGCTCTCTCATTTTCTCTTTCCT 59.752 40.000 0.00 0.00 0.00 3.36
245 246 5.486526 TCTGCTCTCTCATTTTCTCTTTCC 58.513 41.667 0.00 0.00 0.00 3.13
246 247 6.397272 TCTCTGCTCTCTCATTTTCTCTTTC 58.603 40.000 0.00 0.00 0.00 2.62
247 248 6.357579 TCTCTGCTCTCTCATTTTCTCTTT 57.642 37.500 0.00 0.00 0.00 2.52
248 249 5.999205 TCTCTGCTCTCTCATTTTCTCTT 57.001 39.130 0.00 0.00 0.00 2.85
249 250 5.625197 GCTTCTCTGCTCTCTCATTTTCTCT 60.625 44.000 0.00 0.00 0.00 3.10
250 251 4.567959 GCTTCTCTGCTCTCTCATTTTCTC 59.432 45.833 0.00 0.00 0.00 2.87
251 252 4.020396 TGCTTCTCTGCTCTCTCATTTTCT 60.020 41.667 0.00 0.00 0.00 2.52
252 253 4.252073 TGCTTCTCTGCTCTCTCATTTTC 58.748 43.478 0.00 0.00 0.00 2.29
253 254 4.020396 TCTGCTTCTCTGCTCTCTCATTTT 60.020 41.667 0.00 0.00 0.00 1.82
254 255 3.514706 TCTGCTTCTCTGCTCTCTCATTT 59.485 43.478 0.00 0.00 0.00 2.32
255 256 3.098377 TCTGCTTCTCTGCTCTCTCATT 58.902 45.455 0.00 0.00 0.00 2.57
256 257 2.428171 GTCTGCTTCTCTGCTCTCTCAT 59.572 50.000 0.00 0.00 0.00 2.90
257 258 1.818060 GTCTGCTTCTCTGCTCTCTCA 59.182 52.381 0.00 0.00 0.00 3.27
258 259 2.094675 AGTCTGCTTCTCTGCTCTCTC 58.905 52.381 0.00 0.00 0.00 3.20
259 260 2.220653 AGTCTGCTTCTCTGCTCTCT 57.779 50.000 0.00 0.00 0.00 3.10
260 261 4.097741 TCAATAGTCTGCTTCTCTGCTCTC 59.902 45.833 0.00 0.00 0.00 3.20
261 262 4.022603 TCAATAGTCTGCTTCTCTGCTCT 58.977 43.478 0.00 0.00 0.00 4.09
262 263 4.383850 TCAATAGTCTGCTTCTCTGCTC 57.616 45.455 0.00 0.00 0.00 4.26
263 264 5.356291 AATCAATAGTCTGCTTCTCTGCT 57.644 39.130 0.00 0.00 0.00 4.24
264 265 6.279882 AGTAATCAATAGTCTGCTTCTCTGC 58.720 40.000 0.00 0.00 0.00 4.26
265 266 9.979578 ATTAGTAATCAATAGTCTGCTTCTCTG 57.020 33.333 0.00 0.00 0.00 3.35
292 293 9.523168 AACTGACTACTACTACTCTCTCAATTT 57.477 33.333 0.00 0.00 0.00 1.82
293 294 8.952278 CAACTGACTACTACTACTCTCTCAATT 58.048 37.037 0.00 0.00 0.00 2.32
294 295 7.066525 GCAACTGACTACTACTACTCTCTCAAT 59.933 40.741 0.00 0.00 0.00 2.57
295 296 6.372103 GCAACTGACTACTACTACTCTCTCAA 59.628 42.308 0.00 0.00 0.00 3.02
296 297 5.875910 GCAACTGACTACTACTACTCTCTCA 59.124 44.000 0.00 0.00 0.00 3.27
297 298 5.875910 TGCAACTGACTACTACTACTCTCTC 59.124 44.000 0.00 0.00 0.00 3.20
298 299 5.806818 TGCAACTGACTACTACTACTCTCT 58.193 41.667 0.00 0.00 0.00 3.10
299 300 6.149807 ACTTGCAACTGACTACTACTACTCTC 59.850 42.308 0.00 0.00 0.00 3.20
300 301 6.005198 ACTTGCAACTGACTACTACTACTCT 58.995 40.000 0.00 0.00 0.00 3.24
301 302 6.149807 AGACTTGCAACTGACTACTACTACTC 59.850 42.308 0.00 0.00 0.00 2.59
302 303 6.005198 AGACTTGCAACTGACTACTACTACT 58.995 40.000 0.00 0.00 0.00 2.57
303 304 6.087522 CAGACTTGCAACTGACTACTACTAC 58.912 44.000 10.74 0.00 36.38 2.73
304 305 6.255596 CAGACTTGCAACTGACTACTACTA 57.744 41.667 10.74 0.00 36.38 1.82
305 306 5.127693 CAGACTTGCAACTGACTACTACT 57.872 43.478 10.74 0.00 36.38 2.57
320 321 1.571460 GGCTCGTGTTGCAGACTTG 59.429 57.895 0.00 0.00 0.00 3.16
321 322 1.598130 GGGCTCGTGTTGCAGACTT 60.598 57.895 0.00 0.00 0.00 3.01
322 323 1.185618 TAGGGCTCGTGTTGCAGACT 61.186 55.000 0.00 0.00 0.00 3.24
323 324 0.320421 TTAGGGCTCGTGTTGCAGAC 60.320 55.000 0.00 0.00 0.00 3.51
324 325 0.037326 CTTAGGGCTCGTGTTGCAGA 60.037 55.000 0.00 0.00 0.00 4.26
325 326 0.037326 TCTTAGGGCTCGTGTTGCAG 60.037 55.000 0.00 0.00 0.00 4.41
326 327 0.320421 GTCTTAGGGCTCGTGTTGCA 60.320 55.000 0.00 0.00 0.00 4.08
327 328 1.019805 GGTCTTAGGGCTCGTGTTGC 61.020 60.000 0.00 0.00 0.00 4.17
328 329 0.391263 GGGTCTTAGGGCTCGTGTTG 60.391 60.000 0.00 0.00 0.00 3.33
329 330 0.544595 AGGGTCTTAGGGCTCGTGTT 60.545 55.000 0.00 0.00 0.00 3.32
330 331 0.544595 AAGGGTCTTAGGGCTCGTGT 60.545 55.000 0.00 0.00 0.00 4.49
331 332 0.613777 AAAGGGTCTTAGGGCTCGTG 59.386 55.000 0.00 0.00 0.00 4.35
332 333 0.613777 CAAAGGGTCTTAGGGCTCGT 59.386 55.000 0.00 0.00 0.00 4.18
333 334 0.613777 ACAAAGGGTCTTAGGGCTCG 59.386 55.000 0.00 0.00 0.00 5.03
334 335 1.628846 TCACAAAGGGTCTTAGGGCTC 59.371 52.381 0.00 0.00 0.00 4.70
335 336 1.630878 CTCACAAAGGGTCTTAGGGCT 59.369 52.381 0.00 0.00 0.00 5.19
336 337 1.340114 CCTCACAAAGGGTCTTAGGGC 60.340 57.143 0.00 0.00 42.03 5.19
337 338 2.375509 AACCTCACAAAGGGTCTTAGGG 59.624 50.000 0.00 0.00 44.00 3.53
338 339 3.181443 ACAACCTCACAAAGGGTCTTAGG 60.181 47.826 0.00 0.00 44.00 2.69
339 340 4.086706 ACAACCTCACAAAGGGTCTTAG 57.913 45.455 0.00 0.00 44.00 2.18
340 341 5.455612 CCTTACAACCTCACAAAGGGTCTTA 60.456 44.000 0.00 0.00 44.00 2.10
341 342 4.461198 CTTACAACCTCACAAAGGGTCTT 58.539 43.478 0.00 0.00 44.00 3.01
342 343 3.181443 CCTTACAACCTCACAAAGGGTCT 60.181 47.826 0.00 0.00 44.00 3.85
343 344 3.146847 CCTTACAACCTCACAAAGGGTC 58.853 50.000 0.00 0.00 44.00 4.46
347 348 2.884639 CCCACCTTACAACCTCACAAAG 59.115 50.000 0.00 0.00 0.00 2.77
348 349 2.510382 TCCCACCTTACAACCTCACAAA 59.490 45.455 0.00 0.00 0.00 2.83
349 350 2.128535 TCCCACCTTACAACCTCACAA 58.871 47.619 0.00 0.00 0.00 3.33
350 351 1.418637 GTCCCACCTTACAACCTCACA 59.581 52.381 0.00 0.00 0.00 3.58
351 352 1.418637 TGTCCCACCTTACAACCTCAC 59.581 52.381 0.00 0.00 0.00 3.51
352 353 1.809133 TGTCCCACCTTACAACCTCA 58.191 50.000 0.00 0.00 0.00 3.86
353 354 2.501261 GTTGTCCCACCTTACAACCTC 58.499 52.381 7.01 0.00 46.22 3.85
354 355 2.651382 GTTGTCCCACCTTACAACCT 57.349 50.000 7.01 0.00 46.22 3.50
357 358 6.691255 ATTAGTAGTTGTCCCACCTTACAA 57.309 37.500 0.00 0.00 33.35 2.41
358 359 7.795534 TTATTAGTAGTTGTCCCACCTTACA 57.204 36.000 0.00 0.00 0.00 2.41
359 360 9.676861 AATTTATTAGTAGTTGTCCCACCTTAC 57.323 33.333 0.00 0.00 0.00 2.34
361 362 9.901172 CTAATTTATTAGTAGTTGTCCCACCTT 57.099 33.333 2.05 0.00 36.01 3.50
389 390 9.095065 CCGCAGAGTAGTAAGTTTTAAATATGT 57.905 33.333 0.00 0.00 0.00 2.29
390 391 8.548721 CCCGCAGAGTAGTAAGTTTTAAATATG 58.451 37.037 0.00 0.00 0.00 1.78
391 392 8.480501 TCCCGCAGAGTAGTAAGTTTTAAATAT 58.519 33.333 0.00 0.00 0.00 1.28
392 393 7.839907 TCCCGCAGAGTAGTAAGTTTTAAATA 58.160 34.615 0.00 0.00 0.00 1.40
393 394 6.704310 TCCCGCAGAGTAGTAAGTTTTAAAT 58.296 36.000 0.00 0.00 0.00 1.40
394 395 6.100404 TCCCGCAGAGTAGTAAGTTTTAAA 57.900 37.500 0.00 0.00 0.00 1.52
395 396 5.726980 TCCCGCAGAGTAGTAAGTTTTAA 57.273 39.130 0.00 0.00 0.00 1.52
396 397 5.927281 ATCCCGCAGAGTAGTAAGTTTTA 57.073 39.130 0.00 0.00 0.00 1.52
397 398 4.820894 ATCCCGCAGAGTAGTAAGTTTT 57.179 40.909 0.00 0.00 0.00 2.43
398 399 5.597182 TCATATCCCGCAGAGTAGTAAGTTT 59.403 40.000 0.00 0.00 0.00 2.66
399 400 5.138276 TCATATCCCGCAGAGTAGTAAGTT 58.862 41.667 0.00 0.00 0.00 2.66
400 401 4.726583 TCATATCCCGCAGAGTAGTAAGT 58.273 43.478 0.00 0.00 0.00 2.24
401 402 4.156922 CCTCATATCCCGCAGAGTAGTAAG 59.843 50.000 0.00 0.00 0.00 2.34
402 403 4.079970 CCTCATATCCCGCAGAGTAGTAA 58.920 47.826 0.00 0.00 0.00 2.24
403 404 3.074094 ACCTCATATCCCGCAGAGTAGTA 59.926 47.826 0.00 0.00 0.00 1.82
404 405 2.158445 ACCTCATATCCCGCAGAGTAGT 60.158 50.000 0.00 0.00 0.00 2.73
405 406 2.520069 ACCTCATATCCCGCAGAGTAG 58.480 52.381 0.00 0.00 0.00 2.57
406 407 2.628178 CAACCTCATATCCCGCAGAGTA 59.372 50.000 0.00 0.00 0.00 2.59
407 408 1.414181 CAACCTCATATCCCGCAGAGT 59.586 52.381 0.00 0.00 0.00 3.24
408 409 1.875576 GCAACCTCATATCCCGCAGAG 60.876 57.143 0.00 0.00 0.00 3.35
409 410 0.106708 GCAACCTCATATCCCGCAGA 59.893 55.000 0.00 0.00 0.00 4.26
410 411 0.107456 AGCAACCTCATATCCCGCAG 59.893 55.000 0.00 0.00 0.00 5.18
411 412 0.179048 CAGCAACCTCATATCCCGCA 60.179 55.000 0.00 0.00 0.00 5.69
412 413 0.179045 ACAGCAACCTCATATCCCGC 60.179 55.000 0.00 0.00 0.00 6.13
413 414 2.628178 TCTACAGCAACCTCATATCCCG 59.372 50.000 0.00 0.00 0.00 5.14
414 415 4.284490 TCATCTACAGCAACCTCATATCCC 59.716 45.833 0.00 0.00 0.00 3.85
415 416 5.221521 TGTCATCTACAGCAACCTCATATCC 60.222 44.000 0.00 0.00 33.01 2.59
416 417 5.847304 TGTCATCTACAGCAACCTCATATC 58.153 41.667 0.00 0.00 33.01 1.63
417 418 5.876651 TGTCATCTACAGCAACCTCATAT 57.123 39.130 0.00 0.00 33.01 1.78
418 419 5.604565 CATGTCATCTACAGCAACCTCATA 58.395 41.667 0.00 0.00 42.70 2.15
419 420 4.449131 CATGTCATCTACAGCAACCTCAT 58.551 43.478 0.00 0.00 42.70 2.90
420 421 3.865446 CATGTCATCTACAGCAACCTCA 58.135 45.455 0.00 0.00 42.70 3.86
421 422 2.611292 GCATGTCATCTACAGCAACCTC 59.389 50.000 0.00 0.00 42.70 3.85
422 423 2.636830 GCATGTCATCTACAGCAACCT 58.363 47.619 0.00 0.00 42.70 3.50
423 424 1.672881 GGCATGTCATCTACAGCAACC 59.327 52.381 0.00 0.00 42.70 3.77
424 425 2.358957 TGGCATGTCATCTACAGCAAC 58.641 47.619 0.00 0.00 42.70 4.17
425 426 2.785540 TGGCATGTCATCTACAGCAA 57.214 45.000 0.00 0.00 42.70 3.91
426 427 2.785540 TTGGCATGTCATCTACAGCA 57.214 45.000 0.00 0.00 42.70 4.41
427 428 3.004106 GGAATTGGCATGTCATCTACAGC 59.996 47.826 0.00 0.00 42.70 4.40
428 429 4.458397 AGGAATTGGCATGTCATCTACAG 58.542 43.478 0.00 0.00 42.70 2.74
429 430 4.508551 AGGAATTGGCATGTCATCTACA 57.491 40.909 0.00 0.00 43.86 2.74
430 431 7.148340 GCTATAAGGAATTGGCATGTCATCTAC 60.148 40.741 0.00 0.00 0.00 2.59
431 432 6.881065 GCTATAAGGAATTGGCATGTCATCTA 59.119 38.462 0.00 0.00 0.00 1.98
432 433 5.709164 GCTATAAGGAATTGGCATGTCATCT 59.291 40.000 0.00 0.00 0.00 2.90
433 434 5.105997 GGCTATAAGGAATTGGCATGTCATC 60.106 44.000 0.00 0.00 36.20 2.92
434 435 4.768968 GGCTATAAGGAATTGGCATGTCAT 59.231 41.667 0.00 0.00 36.20 3.06
435 436 4.144297 GGCTATAAGGAATTGGCATGTCA 58.856 43.478 0.00 0.00 36.20 3.58
436 437 3.189287 CGGCTATAAGGAATTGGCATGTC 59.811 47.826 0.00 0.00 35.97 3.06
437 438 3.149196 CGGCTATAAGGAATTGGCATGT 58.851 45.455 0.00 0.00 35.97 3.21
438 439 3.189287 GTCGGCTATAAGGAATTGGCATG 59.811 47.826 0.00 0.00 35.97 4.06
439 440 3.412386 GTCGGCTATAAGGAATTGGCAT 58.588 45.455 0.00 0.00 35.97 4.40
440 441 2.486548 GGTCGGCTATAAGGAATTGGCA 60.487 50.000 0.00 0.00 35.97 4.92
441 442 2.152016 GGTCGGCTATAAGGAATTGGC 58.848 52.381 0.00 0.00 33.47 4.52
442 443 2.224209 ACGGTCGGCTATAAGGAATTGG 60.224 50.000 0.00 0.00 0.00 3.16
443 444 3.107642 ACGGTCGGCTATAAGGAATTG 57.892 47.619 0.00 0.00 0.00 2.32
444 445 3.133362 TCAACGGTCGGCTATAAGGAATT 59.867 43.478 0.00 0.00 0.00 2.17
445 446 2.696707 TCAACGGTCGGCTATAAGGAAT 59.303 45.455 0.00 0.00 0.00 3.01
446 447 2.101783 TCAACGGTCGGCTATAAGGAA 58.898 47.619 0.00 0.00 0.00 3.36
447 448 1.766494 TCAACGGTCGGCTATAAGGA 58.234 50.000 0.00 0.00 0.00 3.36
448 449 2.800544 CAATCAACGGTCGGCTATAAGG 59.199 50.000 0.00 0.00 0.00 2.69
449 450 3.454375 ACAATCAACGGTCGGCTATAAG 58.546 45.455 0.00 0.00 0.00 1.73
450 451 3.530265 ACAATCAACGGTCGGCTATAA 57.470 42.857 0.00 0.00 0.00 0.98
451 452 3.633525 AGTACAATCAACGGTCGGCTATA 59.366 43.478 0.00 0.00 0.00 1.31
452 453 2.429610 AGTACAATCAACGGTCGGCTAT 59.570 45.455 0.00 0.00 0.00 2.97
453 454 1.820519 AGTACAATCAACGGTCGGCTA 59.179 47.619 0.00 0.00 0.00 3.93
454 455 0.606604 AGTACAATCAACGGTCGGCT 59.393 50.000 0.00 0.00 0.00 5.52
455 456 2.282701 TAGTACAATCAACGGTCGGC 57.717 50.000 0.00 0.00 0.00 5.54
456 457 8.482429 GTTAATAATAGTACAATCAACGGTCGG 58.518 37.037 0.00 0.00 0.00 4.79
457 458 8.482429 GGTTAATAATAGTACAATCAACGGTCG 58.518 37.037 0.00 0.00 0.00 4.79
458 459 9.316730 TGGTTAATAATAGTACAATCAACGGTC 57.683 33.333 0.00 0.00 0.00 4.79
459 460 9.841295 ATGGTTAATAATAGTACAATCAACGGT 57.159 29.630 0.00 0.00 0.00 4.83
461 462 9.594038 GCATGGTTAATAATAGTACAATCAACG 57.406 33.333 0.00 0.00 0.00 4.10
467 468 9.764363 CTCAGAGCATGGTTAATAATAGTACAA 57.236 33.333 0.00 0.00 0.00 2.41
468 469 8.367911 CCTCAGAGCATGGTTAATAATAGTACA 58.632 37.037 0.00 0.00 0.00 2.90
469 470 7.332182 GCCTCAGAGCATGGTTAATAATAGTAC 59.668 40.741 0.00 0.00 0.00 2.73
470 471 7.386851 GCCTCAGAGCATGGTTAATAATAGTA 58.613 38.462 0.00 0.00 0.00 1.82
471 472 6.234177 GCCTCAGAGCATGGTTAATAATAGT 58.766 40.000 0.00 0.00 0.00 2.12
472 473 5.349817 CGCCTCAGAGCATGGTTAATAATAG 59.650 44.000 0.00 0.00 0.00 1.73
473 474 5.237815 CGCCTCAGAGCATGGTTAATAATA 58.762 41.667 0.00 0.00 0.00 0.98
474 475 4.067896 CGCCTCAGAGCATGGTTAATAAT 58.932 43.478 0.00 0.00 0.00 1.28
475 476 3.466836 CGCCTCAGAGCATGGTTAATAA 58.533 45.455 0.00 0.00 0.00 1.40
476 477 2.806745 GCGCCTCAGAGCATGGTTAATA 60.807 50.000 0.00 0.00 38.88 0.98
477 478 1.959042 CGCCTCAGAGCATGGTTAAT 58.041 50.000 0.00 0.00 0.00 1.40
478 479 0.744414 GCGCCTCAGAGCATGGTTAA 60.744 55.000 0.00 0.00 38.88 2.01
479 480 1.153369 GCGCCTCAGAGCATGGTTA 60.153 57.895 0.00 0.00 38.88 2.85
480 481 2.437359 GCGCCTCAGAGCATGGTT 60.437 61.111 0.00 0.00 38.88 3.67
481 482 4.479993 GGCGCCTCAGAGCATGGT 62.480 66.667 22.15 0.00 41.17 3.55
482 483 4.172512 AGGCGCCTCAGAGCATGG 62.173 66.667 27.08 0.00 41.17 3.66
483 484 2.895865 CAGGCGCCTCAGAGCATG 60.896 66.667 30.29 10.27 43.84 4.06
484 485 3.397439 ACAGGCGCCTCAGAGCAT 61.397 61.111 30.29 0.00 41.17 3.79
485 486 4.383861 CACAGGCGCCTCAGAGCA 62.384 66.667 30.29 0.00 41.17 4.26
486 487 3.006756 TACACAGGCGCCTCAGAGC 62.007 63.158 30.29 0.00 38.21 4.09
487 488 1.153745 GTACACAGGCGCCTCAGAG 60.154 63.158 30.29 18.80 0.00 3.35
488 489 2.646175 GGTACACAGGCGCCTCAGA 61.646 63.158 30.29 9.65 0.00 3.27
489 490 2.125512 GGTACACAGGCGCCTCAG 60.126 66.667 30.29 24.24 0.00 3.35
490 491 3.702048 GGGTACACAGGCGCCTCA 61.702 66.667 30.29 9.48 0.00 3.86
491 492 2.854187 GAAGGGTACACAGGCGCCTC 62.854 65.000 30.29 15.60 0.00 4.70
492 493 2.928396 AAGGGTACACAGGCGCCT 60.928 61.111 27.08 27.08 0.00 5.52
493 494 2.436115 GAAGGGTACACAGGCGCC 60.436 66.667 21.89 21.89 0.00 6.53
494 495 1.003718 AAGAAGGGTACACAGGCGC 60.004 57.895 0.00 0.00 0.00 6.53
495 496 1.298859 GCAAGAAGGGTACACAGGCG 61.299 60.000 0.00 0.00 0.00 5.52
496 497 0.036875 AGCAAGAAGGGTACACAGGC 59.963 55.000 0.00 0.00 0.00 4.85
497 498 2.568623 AAGCAAGAAGGGTACACAGG 57.431 50.000 0.00 0.00 0.00 4.00
498 499 4.003648 CCTAAAGCAAGAAGGGTACACAG 58.996 47.826 0.00 0.00 0.00 3.66
499 500 3.809324 GCCTAAAGCAAGAAGGGTACACA 60.809 47.826 0.00 0.00 42.97 3.72
500 501 2.747989 GCCTAAAGCAAGAAGGGTACAC 59.252 50.000 0.00 0.00 42.97 2.90
501 502 3.067684 GCCTAAAGCAAGAAGGGTACA 57.932 47.619 0.00 0.00 42.97 2.90
513 514 5.254339 AGCAAATAATCTGTGCCTAAAGC 57.746 39.130 0.00 0.00 39.13 3.51
514 515 5.357878 TGGAGCAAATAATCTGTGCCTAAAG 59.642 40.000 0.00 0.00 39.13 1.85
515 516 5.260424 TGGAGCAAATAATCTGTGCCTAAA 58.740 37.500 0.00 0.00 39.13 1.85
516 517 4.854173 TGGAGCAAATAATCTGTGCCTAA 58.146 39.130 0.00 0.00 39.13 2.69
517 518 4.164030 TCTGGAGCAAATAATCTGTGCCTA 59.836 41.667 0.00 0.00 39.13 3.93
518 519 3.054139 TCTGGAGCAAATAATCTGTGCCT 60.054 43.478 0.00 0.00 39.13 4.75
519 520 3.282021 TCTGGAGCAAATAATCTGTGCC 58.718 45.455 0.00 0.00 39.13 5.01
520 521 4.439289 GGTTCTGGAGCAAATAATCTGTGC 60.439 45.833 0.00 0.00 38.59 4.57
521 522 4.946157 AGGTTCTGGAGCAAATAATCTGTG 59.054 41.667 0.00 0.00 0.00 3.66
522 523 5.184892 AGGTTCTGGAGCAAATAATCTGT 57.815 39.130 0.00 0.00 0.00 3.41
523 524 7.050377 TCTAAGGTTCTGGAGCAAATAATCTG 58.950 38.462 0.00 0.00 0.00 2.90
524 525 7.200434 TCTAAGGTTCTGGAGCAAATAATCT 57.800 36.000 0.00 0.00 0.00 2.40
525 526 7.716998 TCATCTAAGGTTCTGGAGCAAATAATC 59.283 37.037 0.00 0.00 0.00 1.75
526 527 7.577303 TCATCTAAGGTTCTGGAGCAAATAAT 58.423 34.615 0.00 0.00 0.00 1.28
527 528 6.957631 TCATCTAAGGTTCTGGAGCAAATAA 58.042 36.000 0.00 0.00 0.00 1.40
528 529 6.560003 TCATCTAAGGTTCTGGAGCAAATA 57.440 37.500 0.00 0.00 0.00 1.40
529 530 5.441718 TCATCTAAGGTTCTGGAGCAAAT 57.558 39.130 0.00 0.00 0.00 2.32
530 531 4.908601 TCATCTAAGGTTCTGGAGCAAA 57.091 40.909 0.00 0.00 0.00 3.68
531 532 4.908601 TTCATCTAAGGTTCTGGAGCAA 57.091 40.909 0.00 0.00 0.00 3.91
532 533 4.471025 TGATTCATCTAAGGTTCTGGAGCA 59.529 41.667 0.00 0.00 0.00 4.26
533 534 4.813697 GTGATTCATCTAAGGTTCTGGAGC 59.186 45.833 0.00 0.00 0.00 4.70
534 535 5.814705 GTGTGATTCATCTAAGGTTCTGGAG 59.185 44.000 0.00 0.00 0.00 3.86
535 536 5.485353 AGTGTGATTCATCTAAGGTTCTGGA 59.515 40.000 0.00 0.00 0.00 3.86
536 537 5.583854 CAGTGTGATTCATCTAAGGTTCTGG 59.416 44.000 0.00 0.00 0.00 3.86
537 538 6.401394 TCAGTGTGATTCATCTAAGGTTCTG 58.599 40.000 0.00 0.00 0.00 3.02
538 539 6.611613 TCAGTGTGATTCATCTAAGGTTCT 57.388 37.500 0.00 0.00 0.00 3.01
539 540 7.856145 ATTCAGTGTGATTCATCTAAGGTTC 57.144 36.000 0.00 0.00 0.00 3.62
540 541 7.884877 TGAATTCAGTGTGATTCATCTAAGGTT 59.115 33.333 3.38 0.00 0.00 3.50
541 542 7.397221 TGAATTCAGTGTGATTCATCTAAGGT 58.603 34.615 3.38 0.00 0.00 3.50
542 543 7.854557 TGAATTCAGTGTGATTCATCTAAGG 57.145 36.000 3.38 0.00 0.00 2.69
582 583 1.005450 GATGGTGGGACCTGGCTTTTA 59.995 52.381 0.00 0.00 39.58 1.52
587 588 2.843912 CTTGGATGGTGGGACCTGGC 62.844 65.000 0.00 0.00 39.58 4.85
618 619 2.125912 CGTCTACTGCAGCCGCTT 60.126 61.111 15.27 0.00 39.64 4.68
619 620 1.592400 TAACGTCTACTGCAGCCGCT 61.592 55.000 15.27 5.28 39.64 5.52
620 621 1.153901 TAACGTCTACTGCAGCCGC 60.154 57.895 15.27 0.60 39.24 6.53
621 622 0.170561 AGTAACGTCTACTGCAGCCG 59.829 55.000 15.27 13.46 0.00 5.52
622 623 1.067776 ACAGTAACGTCTACTGCAGCC 60.068 52.381 24.94 0.00 46.46 4.85
623 624 1.986378 CACAGTAACGTCTACTGCAGC 59.014 52.381 24.94 0.00 46.46 5.25
624 625 1.986378 GCACAGTAACGTCTACTGCAG 59.014 52.381 24.94 13.48 46.46 4.41
625 626 1.338655 TGCACAGTAACGTCTACTGCA 59.661 47.619 24.94 19.73 46.46 4.41
626 627 2.060326 TGCACAGTAACGTCTACTGC 57.940 50.000 24.94 18.20 46.46 4.40
628 629 2.029380 TGCATGCACAGTAACGTCTACT 60.029 45.455 18.46 0.00 0.00 2.57
629 630 2.333926 TGCATGCACAGTAACGTCTAC 58.666 47.619 18.46 0.00 0.00 2.59
630 631 2.606108 CTGCATGCACAGTAACGTCTA 58.394 47.619 18.46 0.00 32.78 2.59
672 693 1.590259 CGTTTGGTTGGGTTTGGCG 60.590 57.895 0.00 0.00 0.00 5.69
690 721 0.960861 GGGTGCTACTGCTGGGTTTC 60.961 60.000 0.00 0.00 40.48 2.78
857 971 1.080434 GACGTCTGACTGAGTGGCC 60.080 63.158 8.70 0.00 0.00 5.36
858 972 0.664767 GTGACGTCTGACTGAGTGGC 60.665 60.000 17.92 0.00 0.00 5.01
932 1060 1.688735 TCCTCTTCCTCTGTGTGTGTG 59.311 52.381 0.00 0.00 0.00 3.82
933 1061 2.088104 TCCTCTTCCTCTGTGTGTGT 57.912 50.000 0.00 0.00 0.00 3.72
934 1062 2.630098 TCTTCCTCTTCCTCTGTGTGTG 59.370 50.000 0.00 0.00 0.00 3.82
935 1063 2.896685 CTCTTCCTCTTCCTCTGTGTGT 59.103 50.000 0.00 0.00 0.00 3.72
936 1064 3.161067 TCTCTTCCTCTTCCTCTGTGTG 58.839 50.000 0.00 0.00 0.00 3.82
937 1065 3.075283 TCTCTCTTCCTCTTCCTCTGTGT 59.925 47.826 0.00 0.00 0.00 3.72
938 1066 3.696045 TCTCTCTTCCTCTTCCTCTGTG 58.304 50.000 0.00 0.00 0.00 3.66
939 1067 3.591527 TCTCTCTCTTCCTCTTCCTCTGT 59.408 47.826 0.00 0.00 0.00 3.41
940 1068 4.202441 CTCTCTCTCTTCCTCTTCCTCTG 58.798 52.174 0.00 0.00 0.00 3.35
967 1134 1.227263 CACACGGATGTCGATCCCC 60.227 63.158 0.00 0.00 45.12 4.81
1450 1700 6.547880 AGTTGTAGATTCTACGGACAGATCAT 59.452 38.462 21.99 7.00 0.00 2.45
1470 1720 8.072321 TCTATCTTCTCTGCTAATTGAGTTGT 57.928 34.615 0.00 0.00 0.00 3.32
1471 1721 7.169645 GCTCTATCTTCTCTGCTAATTGAGTTG 59.830 40.741 0.00 0.00 0.00 3.16
1472 1722 7.069826 AGCTCTATCTTCTCTGCTAATTGAGTT 59.930 37.037 0.00 0.00 0.00 3.01
1564 1832 5.664457 TCGCTTTCACAGATCTCAACATAT 58.336 37.500 0.00 0.00 0.00 1.78
1625 1932 0.455633 GAGCAACCAAGCAAGCATCG 60.456 55.000 0.00 0.00 36.85 3.84
1691 2003 3.605486 GGCGAGTATTTTATACTACCGCG 59.395 47.826 18.40 0.00 37.88 6.46
1695 2007 3.922850 GGCGGGCGAGTATTTTATACTAC 59.077 47.826 0.00 0.00 0.00 2.73
1716 2038 0.179134 GTCTCCCAGAATGACGACGG 60.179 60.000 0.00 0.00 39.69 4.79
1761 2083 0.663153 GCGGTTAATGCTGGATGACC 59.337 55.000 5.30 5.30 0.00 4.02
1798 2120 1.961394 ACTCTAGCAGACCAAACACGA 59.039 47.619 0.00 0.00 0.00 4.35
1799 2121 2.440539 ACTCTAGCAGACCAAACACG 57.559 50.000 0.00 0.00 0.00 4.49
1800 2122 6.260271 ACTTTTTACTCTAGCAGACCAAACAC 59.740 38.462 0.00 0.00 0.00 3.32
1803 2125 7.338449 ACAAACTTTTTACTCTAGCAGACCAAA 59.662 33.333 0.00 0.00 0.00 3.28
1805 2127 6.260050 CACAAACTTTTTACTCTAGCAGACCA 59.740 38.462 0.00 0.00 0.00 4.02
1806 2128 6.659776 CACAAACTTTTTACTCTAGCAGACC 58.340 40.000 0.00 0.00 0.00 3.85
1807 2129 6.136743 GCACAAACTTTTTACTCTAGCAGAC 58.863 40.000 0.00 0.00 0.00 3.51
1808 2130 5.050363 CGCACAAACTTTTTACTCTAGCAGA 60.050 40.000 0.00 0.00 0.00 4.26
1809 2131 5.050363 TCGCACAAACTTTTTACTCTAGCAG 60.050 40.000 0.00 0.00 0.00 4.24
1810 2132 4.812091 TCGCACAAACTTTTTACTCTAGCA 59.188 37.500 0.00 0.00 0.00 3.49
1812 2134 8.067784 TCATTTCGCACAAACTTTTTACTCTAG 58.932 33.333 0.00 0.00 0.00 2.43
1813 2135 7.853929 GTCATTTCGCACAAACTTTTTACTCTA 59.146 33.333 0.00 0.00 0.00 2.43
1816 2138 5.454232 CGTCATTTCGCACAAACTTTTTACT 59.546 36.000 0.00 0.00 0.00 2.24
1817 2139 5.331235 CCGTCATTTCGCACAAACTTTTTAC 60.331 40.000 0.00 0.00 0.00 2.01
1818 2140 4.735822 CCGTCATTTCGCACAAACTTTTTA 59.264 37.500 0.00 0.00 0.00 1.52
1819 2141 3.549873 CCGTCATTTCGCACAAACTTTTT 59.450 39.130 0.00 0.00 0.00 1.94
1835 2157 1.221840 CAGCTAGTTGCCCCGTCAT 59.778 57.895 0.00 0.00 44.23 3.06
1845 2167 4.101448 CCGGCCAGGCAGCTAGTT 62.101 66.667 15.19 0.00 0.00 2.24
1854 2176 2.438434 CTTAACCAGCCGGCCAGG 60.438 66.667 28.61 28.61 44.97 4.45
1855 2177 2.040544 CACTTAACCAGCCGGCCAG 61.041 63.158 26.15 18.08 34.57 4.85
1856 2178 2.033448 CACTTAACCAGCCGGCCA 59.967 61.111 26.15 0.00 34.57 5.36
1857 2179 3.440415 GCACTTAACCAGCCGGCC 61.440 66.667 26.15 5.07 34.57 6.13
1858 2180 2.046285 ATGCACTTAACCAGCCGGC 61.046 57.895 21.89 21.89 34.57 6.13
1860 2182 0.881118 AACATGCACTTAACCAGCCG 59.119 50.000 0.00 0.00 0.00 5.52
1886 2246 3.990092 AGCAATCGAAGTTCACTGTGTA 58.010 40.909 7.79 0.00 0.00 2.90
1900 2260 3.557577 TTCAACATGGACAAGCAATCG 57.442 42.857 0.00 0.00 0.00 3.34
1901 2261 3.670055 CGTTTCAACATGGACAAGCAATC 59.330 43.478 0.00 0.00 0.00 2.67
1902 2262 3.068024 ACGTTTCAACATGGACAAGCAAT 59.932 39.130 0.00 0.00 0.00 3.56
1929 2290 2.206750 TGCTCGTTTTCACTGTGTACC 58.793 47.619 7.79 0.00 0.00 3.34
1949 2310 8.437575 CACCCCATGTAATCCTACTATACTTTT 58.562 37.037 0.00 0.00 0.00 2.27
1953 2314 5.247564 TGCACCCCATGTAATCCTACTATAC 59.752 44.000 0.00 0.00 0.00 1.47
1954 2315 5.407936 TGCACCCCATGTAATCCTACTATA 58.592 41.667 0.00 0.00 0.00 1.31
1955 2316 4.239495 TGCACCCCATGTAATCCTACTAT 58.761 43.478 0.00 0.00 0.00 2.12
1956 2317 3.659841 TGCACCCCATGTAATCCTACTA 58.340 45.455 0.00 0.00 0.00 1.82
1957 2318 2.487775 TGCACCCCATGTAATCCTACT 58.512 47.619 0.00 0.00 0.00 2.57
1958 2319 3.149196 CATGCACCCCATGTAATCCTAC 58.851 50.000 0.00 0.00 45.05 3.18
2091 2467 3.161866 GACCTTGGTTTGATAAAGGGCA 58.838 45.455 1.58 0.00 46.69 5.36
2139 2515 2.157668 CGCGCCCACTAAAAGCATATAG 59.842 50.000 0.00 0.00 0.00 1.31
2145 2521 1.017701 ACTACGCGCCCACTAAAAGC 61.018 55.000 5.73 0.00 0.00 3.51
2225 2601 8.696374 TGGATAACAGAAAACCATTGTTAACAA 58.304 29.630 22.58 22.58 39.78 2.83
2226 2602 8.239038 TGGATAACAGAAAACCATTGTTAACA 57.761 30.769 3.59 3.59 39.78 2.41
2227 2603 9.705290 ATTGGATAACAGAAAACCATTGTTAAC 57.295 29.630 0.00 0.00 39.78 2.01
2229 2605 9.921637 GAATTGGATAACAGAAAACCATTGTTA 57.078 29.630 0.00 0.00 40.40 2.41
2230 2606 7.598493 CGAATTGGATAACAGAAAACCATTGTT 59.402 33.333 0.00 0.00 38.48 2.83
2293 2670 1.265905 CCCGAAAAACAAAGGGAGACG 59.734 52.381 0.00 0.00 46.64 4.18
2310 2687 3.187227 GTGTATGAGAAATAGCATGCCCG 59.813 47.826 15.66 0.00 0.00 6.13
2348 2725 2.478894 GCTCCGAAAATGAACTGACGAA 59.521 45.455 0.00 0.00 0.00 3.85
2354 2731 3.941483 CCTATGTGCTCCGAAAATGAACT 59.059 43.478 0.00 0.00 0.00 3.01
2357 2734 3.450817 TCTCCTATGTGCTCCGAAAATGA 59.549 43.478 0.00 0.00 0.00 2.57
2358 2735 3.797039 TCTCCTATGTGCTCCGAAAATG 58.203 45.455 0.00 0.00 0.00 2.32
2364 2741 2.791383 CTTCTCTCCTATGTGCTCCG 57.209 55.000 0.00 0.00 0.00 4.63


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.