Multiple sequence alignment - TraesCS7B01G294300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G294300 chr7B 100.000 2372 0 0 1 2372 531179124 531181495 0.000000e+00 4381.0
1 TraesCS7B01G294300 chr7B 86.100 741 45 23 731 1420 531222672 531221939 0.000000e+00 745.0
2 TraesCS7B01G294300 chr7B 80.289 761 76 42 717 1413 530869580 530870330 7.560000e-140 507.0
3 TraesCS7B01G294300 chr7B 85.448 268 30 7 208 471 531231156 531230894 1.080000e-68 270.0
4 TraesCS7B01G294300 chr7D 89.375 960 51 29 725 1651 501599659 501600600 0.000000e+00 1160.0
5 TraesCS7B01G294300 chr7D 86.582 790 54 25 718 1471 501778182 501777409 0.000000e+00 824.0
6 TraesCS7B01G294300 chr7D 88.306 667 35 21 721 1352 501610339 501609681 0.000000e+00 760.0
7 TraesCS7B01G294300 chr7D 80.383 627 76 26 79 688 501787321 501786725 1.300000e-117 433.0
8 TraesCS7B01G294300 chr7D 97.710 131 3 0 1521 1651 501777409 501777279 2.370000e-55 226.0
9 TraesCS7B01G294300 chr7D 82.895 228 30 6 249 472 501611838 501611616 1.860000e-46 196.0
10 TraesCS7B01G294300 chr7A 89.091 715 37 15 948 1651 569112589 569111905 0.000000e+00 850.0
11 TraesCS7B01G294300 chr7A 85.482 861 55 25 800 1612 568129597 568130435 0.000000e+00 833.0
12 TraesCS7B01G294300 chr7A 91.000 500 35 4 997 1494 568579813 568580304 0.000000e+00 665.0
13 TraesCS7B01G294300 chr7A 84.513 678 40 29 725 1360 568696009 568695355 5.610000e-171 610.0
14 TraesCS7B01G294300 chr7A 82.938 422 46 15 133 538 569113507 569113096 8.060000e-95 357.0
15 TraesCS7B01G294300 chr7A 79.178 365 49 23 575 932 568579130 568579474 6.600000e-56 228.0
16 TraesCS7B01G294300 chr7A 95.082 122 6 0 1530 1651 568580300 568580421 2.410000e-45 193.0
17 TraesCS7B01G294300 chr7A 73.333 555 117 21 1796 2342 215575897 215575366 2.420000e-40 176.0
18 TraesCS7B01G294300 chr7A 98.214 56 1 0 477 532 568696329 568696274 5.400000e-17 99.0
19 TraesCS7B01G294300 chr7A 82.353 85 5 7 1646 1727 709261316 709261239 5.470000e-07 65.8
20 TraesCS7B01G294300 chr3D 76.042 576 115 9 1802 2369 290845322 290844762 6.460000e-71 278.0
21 TraesCS7B01G294300 chr6D 78.220 427 83 9 1797 2218 146941132 146941553 5.030000e-67 265.0
22 TraesCS7B01G294300 chr6D 77.622 429 89 5 1797 2220 399027560 399027134 1.090000e-63 254.0
23 TraesCS7B01G294300 chr2D 76.091 527 97 20 1790 2309 642303126 642303630 5.060000e-62 248.0
24 TraesCS7B01G294300 chr2D 83.333 90 10 3 1642 1726 651698040 651698129 7.030000e-11 78.7
25 TraesCS7B01G294300 chr3A 80.435 322 59 4 1903 2223 358910394 358910712 2.360000e-60 243.0
26 TraesCS7B01G294300 chr2B 77.262 409 82 10 1816 2220 686453318 686452917 1.830000e-56 230.0
27 TraesCS7B01G294300 chr2B 74.479 576 116 23 1799 2366 599258010 599258562 1.100000e-53 220.0
28 TraesCS7B01G294300 chr2B 93.023 43 3 0 1685 1727 671014592 671014634 1.970000e-06 63.9
29 TraesCS7B01G294300 chr5B 76.279 430 91 9 1796 2220 486284132 486284555 3.970000e-53 219.0
30 TraesCS7B01G294300 chr5B 97.619 42 1 0 1684 1725 228761172 228761131 3.270000e-09 73.1
31 TraesCS7B01G294300 chr5B 85.185 54 8 0 2224 2277 391825092 391825145 3.290000e-04 56.5
32 TraesCS7B01G294300 chr1D 76.590 393 79 11 1796 2181 424909325 424908939 1.110000e-48 204.0
33 TraesCS7B01G294300 chr6A 72.727 440 79 20 1945 2369 390730320 390729907 2.490000e-20 110.0
34 TraesCS7B01G294300 chr6A 82.022 89 11 3 1643 1726 356112243 356112331 1.180000e-08 71.3
35 TraesCS7B01G294300 chr1A 85.227 88 7 4 1646 1727 449669509 449669422 4.200000e-13 86.1
36 TraesCS7B01G294300 chr1A 100.000 30 0 0 1696 1725 589476204 589476233 3.290000e-04 56.5
37 TraesCS7B01G294300 chr4B 100.000 28 0 0 1698 1725 155092701 155092674 4.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G294300 chr7B 531179124 531181495 2371 False 4381.0 4381 100.0000 1 2372 1 chr7B.!!$F2 2371
1 TraesCS7B01G294300 chr7B 531221939 531222672 733 True 745.0 745 86.1000 731 1420 1 chr7B.!!$R1 689
2 TraesCS7B01G294300 chr7B 530869580 530870330 750 False 507.0 507 80.2890 717 1413 1 chr7B.!!$F1 696
3 TraesCS7B01G294300 chr7D 501599659 501600600 941 False 1160.0 1160 89.3750 725 1651 1 chr7D.!!$F1 926
4 TraesCS7B01G294300 chr7D 501777279 501778182 903 True 525.0 824 92.1460 718 1651 2 chr7D.!!$R3 933
5 TraesCS7B01G294300 chr7D 501609681 501611838 2157 True 478.0 760 85.6005 249 1352 2 chr7D.!!$R2 1103
6 TraesCS7B01G294300 chr7D 501786725 501787321 596 True 433.0 433 80.3830 79 688 1 chr7D.!!$R1 609
7 TraesCS7B01G294300 chr7A 568129597 568130435 838 False 833.0 833 85.4820 800 1612 1 chr7A.!!$F1 812
8 TraesCS7B01G294300 chr7A 569111905 569113507 1602 True 603.5 850 86.0145 133 1651 2 chr7A.!!$R4 1518
9 TraesCS7B01G294300 chr7A 568579130 568580421 1291 False 362.0 665 88.4200 575 1651 3 chr7A.!!$F2 1076
10 TraesCS7B01G294300 chr7A 568695355 568696329 974 True 354.5 610 91.3635 477 1360 2 chr7A.!!$R3 883
11 TraesCS7B01G294300 chr3D 290844762 290845322 560 True 278.0 278 76.0420 1802 2369 1 chr3D.!!$R1 567
12 TraesCS7B01G294300 chr2D 642303126 642303630 504 False 248.0 248 76.0910 1790 2309 1 chr2D.!!$F1 519
13 TraesCS7B01G294300 chr2B 599258010 599258562 552 False 220.0 220 74.4790 1799 2366 1 chr2B.!!$F1 567

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
44 45 0.034896 ACTCATCCACCCACGAACAC 59.965 55.0 0.0 0.0 0.0 3.32 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1723 3334 0.034767 ATGACGACGACTGGGGAGTA 60.035 55.0 0.0 0.0 0.0 2.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.584688 GGGCAAAAGCATGAGCAC 57.415 55.556 0.00 0.00 45.49 4.40
18 19 1.444895 GGGCAAAAGCATGAGCACG 60.445 57.895 0.00 0.00 45.49 5.34
19 20 1.580942 GGCAAAAGCATGAGCACGA 59.419 52.632 0.00 0.00 45.49 4.35
20 21 0.730494 GGCAAAAGCATGAGCACGAC 60.730 55.000 0.00 0.00 45.49 4.34
21 22 0.040157 GCAAAAGCATGAGCACGACA 60.040 50.000 0.00 0.00 45.49 4.35
22 23 1.401931 GCAAAAGCATGAGCACGACAT 60.402 47.619 0.00 0.00 45.49 3.06
23 24 2.512885 CAAAAGCATGAGCACGACATC 58.487 47.619 0.00 0.00 45.49 3.06
24 25 0.723414 AAAGCATGAGCACGACATCG 59.277 50.000 0.00 0.00 45.49 3.84
25 26 0.108662 AAGCATGAGCACGACATCGA 60.109 50.000 8.54 0.00 45.49 3.59
26 27 0.803768 AGCATGAGCACGACATCGAC 60.804 55.000 8.54 0.00 45.49 4.20
27 28 0.803768 GCATGAGCACGACATCGACT 60.804 55.000 8.54 4.84 43.39 4.18
28 29 1.195347 CATGAGCACGACATCGACTC 58.805 55.000 8.54 13.76 43.02 3.36
29 30 2.253513 TGAGCACGACATCGACTCA 58.746 52.632 20.11 20.11 45.71 3.41
30 31 0.811281 TGAGCACGACATCGACTCAT 59.189 50.000 20.11 0.23 44.37 2.90
31 32 1.202188 TGAGCACGACATCGACTCATC 60.202 52.381 20.11 8.05 44.37 2.92
32 33 0.101399 AGCACGACATCGACTCATCC 59.899 55.000 8.54 0.00 43.02 3.51
33 34 0.179137 GCACGACATCGACTCATCCA 60.179 55.000 8.54 0.00 43.02 3.41
34 35 1.550065 CACGACATCGACTCATCCAC 58.450 55.000 8.54 0.00 43.02 4.02
35 36 0.456221 ACGACATCGACTCATCCACC 59.544 55.000 8.54 0.00 43.02 4.61
36 37 0.249073 CGACATCGACTCATCCACCC 60.249 60.000 0.00 0.00 43.02 4.61
37 38 0.824109 GACATCGACTCATCCACCCA 59.176 55.000 0.00 0.00 0.00 4.51
38 39 0.537188 ACATCGACTCATCCACCCAC 59.463 55.000 0.00 0.00 0.00 4.61
39 40 0.528466 CATCGACTCATCCACCCACG 60.528 60.000 0.00 0.00 0.00 4.94
40 41 0.683179 ATCGACTCATCCACCCACGA 60.683 55.000 0.00 0.00 0.00 4.35
41 42 0.896479 TCGACTCATCCACCCACGAA 60.896 55.000 0.00 0.00 0.00 3.85
42 43 0.736325 CGACTCATCCACCCACGAAC 60.736 60.000 0.00 0.00 0.00 3.95
43 44 0.320374 GACTCATCCACCCACGAACA 59.680 55.000 0.00 0.00 0.00 3.18
44 45 0.034896 ACTCATCCACCCACGAACAC 59.965 55.000 0.00 0.00 0.00 3.32
45 46 0.673644 CTCATCCACCCACGAACACC 60.674 60.000 0.00 0.00 0.00 4.16
46 47 1.674322 CATCCACCCACGAACACCC 60.674 63.158 0.00 0.00 0.00 4.61
47 48 2.150719 ATCCACCCACGAACACCCA 61.151 57.895 0.00 0.00 0.00 4.51
48 49 1.710996 ATCCACCCACGAACACCCAA 61.711 55.000 0.00 0.00 0.00 4.12
49 50 1.454111 CCACCCACGAACACCCAAA 60.454 57.895 0.00 0.00 0.00 3.28
50 51 1.452145 CCACCCACGAACACCCAAAG 61.452 60.000 0.00 0.00 0.00 2.77
51 52 1.152839 ACCCACGAACACCCAAAGG 60.153 57.895 0.00 0.00 40.04 3.11
52 53 2.561037 CCCACGAACACCCAAAGGC 61.561 63.158 0.00 0.00 36.11 4.35
53 54 2.561037 CCACGAACACCCAAAGGCC 61.561 63.158 0.00 0.00 36.11 5.19
54 55 2.593436 ACGAACACCCAAAGGCCG 60.593 61.111 0.00 0.00 36.11 6.13
55 56 4.038080 CGAACACCCAAAGGCCGC 62.038 66.667 0.00 0.00 36.11 6.53
56 57 3.680786 GAACACCCAAAGGCCGCC 61.681 66.667 0.00 0.00 36.11 6.13
57 58 4.531426 AACACCCAAAGGCCGCCA 62.531 61.111 13.15 0.00 36.11 5.69
64 65 4.388499 AAAGGCCGCCACGTCGAT 62.388 61.111 13.15 0.00 0.00 3.59
65 66 4.814294 AAGGCCGCCACGTCGATC 62.814 66.667 13.15 0.00 0.00 3.69
76 77 3.229652 CGTCGATCGTTCATTCGGA 57.770 52.632 15.94 0.00 36.08 4.55
77 78 1.113253 CGTCGATCGTTCATTCGGAG 58.887 55.000 15.94 0.00 36.08 4.63
109 110 0.613260 CCTGGACCAGGTTCATCGAA 59.387 55.000 29.93 0.00 45.82 3.71
111 112 0.613260 TGGACCAGGTTCATCGAAGG 59.387 55.000 0.00 0.00 0.00 3.46
124 125 1.095600 TCGAAGGTCGACTCCATCTG 58.904 55.000 16.46 5.93 44.82 2.90
131 133 3.261897 AGGTCGACTCCATCTGTTTTCAT 59.738 43.478 16.46 0.00 0.00 2.57
137 139 3.896888 ACTCCATCTGTTTTCATGGCAAA 59.103 39.130 0.00 0.00 31.89 3.68
148 150 2.161855 TCATGGCAAAGTTCGCTGAAT 58.838 42.857 0.00 0.00 0.00 2.57
153 155 1.806542 GCAAAGTTCGCTGAATCTCCA 59.193 47.619 0.00 0.00 0.00 3.86
161 163 0.602372 GCTGAATCTCCATCGCCCTC 60.602 60.000 0.00 0.00 0.00 4.30
167 169 1.141185 TCTCCATCGCCCTCTCTAGA 58.859 55.000 0.00 0.00 0.00 2.43
170 175 0.316841 CCATCGCCCTCTCTAGAAGC 59.683 60.000 0.00 0.00 0.00 3.86
185 190 1.002868 AAGCATTGCTCGCTCCACT 60.003 52.632 12.39 0.00 38.25 4.00
189 194 1.376543 CATTGCTCGCTCCACTGATT 58.623 50.000 0.00 0.00 0.00 2.57
191 196 1.442769 TTGCTCGCTCCACTGATTTC 58.557 50.000 0.00 0.00 0.00 2.17
192 197 0.610174 TGCTCGCTCCACTGATTTCT 59.390 50.000 0.00 0.00 0.00 2.52
193 198 1.285578 GCTCGCTCCACTGATTTCTC 58.714 55.000 0.00 0.00 0.00 2.87
195 200 1.205655 CTCGCTCCACTGATTTCTCCA 59.794 52.381 0.00 0.00 0.00 3.86
196 201 1.205655 TCGCTCCACTGATTTCTCCAG 59.794 52.381 0.00 0.00 37.64 3.86
198 203 1.065564 GCTCCACTGATTTCTCCAGCT 60.066 52.381 0.00 0.00 35.14 4.24
202 216 0.990374 ACTGATTTCTCCAGCTGCCT 59.010 50.000 8.66 0.00 35.14 4.75
205 219 2.170187 CTGATTTCTCCAGCTGCCTAGT 59.830 50.000 8.66 0.00 0.00 2.57
228 242 3.068590 AGTGCATGCATGGGCTTAATTAC 59.931 43.478 25.64 5.79 41.91 1.89
230 244 3.181477 TGCATGCATGGGCTTAATTACAC 60.181 43.478 27.34 6.96 41.91 2.90
269 283 1.411394 CATTGAAACTGCAACTGCCG 58.589 50.000 0.00 0.00 41.18 5.69
284 298 3.254654 CCGCGTCGCATGTACAGG 61.255 66.667 18.75 2.43 0.00 4.00
299 313 1.290324 CAGGTGACAGCGCAGTACT 59.710 57.895 11.47 4.19 0.00 2.73
300 314 0.319900 CAGGTGACAGCGCAGTACTT 60.320 55.000 11.47 0.79 0.00 2.24
301 315 1.067846 CAGGTGACAGCGCAGTACTTA 60.068 52.381 11.47 0.00 0.00 2.24
302 316 1.067776 AGGTGACAGCGCAGTACTTAC 60.068 52.381 11.47 5.41 0.00 2.34
312 326 2.095919 CGCAGTACTTACAAAGTTGGCC 60.096 50.000 0.00 0.00 42.81 5.36
318 333 5.648092 AGTACTTACAAAGTTGGCCATCATC 59.352 40.000 16.12 3.37 42.81 2.92
319 334 4.406456 ACTTACAAAGTTGGCCATCATCA 58.594 39.130 16.12 0.00 39.04 3.07
323 338 3.018856 CAAAGTTGGCCATCATCAGCTA 58.981 45.455 16.12 0.00 0.00 3.32
331 346 1.337260 CCATCATCAGCTACCGCTACC 60.337 57.143 0.00 0.00 46.99 3.18
345 361 4.376176 TACCCCGCCGTCCGTTTG 62.376 66.667 0.00 0.00 34.38 2.93
349 365 2.663852 CCGCCGTCCGTTTGTTCT 60.664 61.111 0.00 0.00 34.38 3.01
351 367 1.952133 CGCCGTCCGTTTGTTCTGA 60.952 57.895 0.00 0.00 0.00 3.27
354 370 1.578583 CCGTCCGTTTGTTCTGACTT 58.421 50.000 0.00 0.00 0.00 3.01
355 371 1.937899 CCGTCCGTTTGTTCTGACTTT 59.062 47.619 0.00 0.00 0.00 2.66
362 385 4.207019 CCGTTTGTTCTGACTTTCAAATGC 59.793 41.667 0.00 0.00 36.25 3.56
376 399 3.186909 TCAAATGCGTCTAGGATCAACG 58.813 45.455 0.00 0.00 39.33 4.10
389 412 2.814183 ATCAACGAGGCGTGGACGAC 62.814 60.000 2.73 0.00 42.81 4.34
451 480 4.640805 CAAGCATGCATTGTTGTCTTTC 57.359 40.909 21.98 0.00 0.00 2.62
484 552 0.896923 TGCTTTTGATCCACATGGCC 59.103 50.000 0.00 0.00 34.44 5.36
531 599 2.626088 GTTCTGCATTGAACTCTGCC 57.374 50.000 10.69 0.00 42.03 4.85
532 600 1.881973 GTTCTGCATTGAACTCTGCCA 59.118 47.619 10.69 0.00 42.03 4.92
565 636 4.567116 CCAGTACCAGTACAGTCTACCTCA 60.567 50.000 10.41 0.00 38.48 3.86
568 639 1.751924 CCAGTACAGTCTACCTCAGCC 59.248 57.143 0.00 0.00 0.00 4.85
572 643 1.562783 ACAGTCTACCTCAGCCTTCC 58.437 55.000 0.00 0.00 0.00 3.46
573 644 0.457851 CAGTCTACCTCAGCCTTCCG 59.542 60.000 0.00 0.00 0.00 4.30
585 656 0.528684 GCCTTCCGGAATCTCGAGTG 60.529 60.000 19.21 2.84 0.00 3.51
604 676 1.005394 TCCGCTTCTCGTTTCACCC 60.005 57.895 0.00 0.00 36.19 4.61
605 677 1.301401 CCGCTTCTCGTTTCACCCA 60.301 57.895 0.00 0.00 36.19 4.51
606 678 1.566018 CCGCTTCTCGTTTCACCCAC 61.566 60.000 0.00 0.00 36.19 4.61
609 681 1.939838 GCTTCTCGTTTCACCCACGAT 60.940 52.381 0.00 0.00 45.26 3.73
690 807 6.463360 TGAATTCAGTTTTTATCCAAAGGCC 58.537 36.000 3.38 0.00 0.00 5.19
694 811 5.852827 TCAGTTTTTATCCAAAGGCCAAAG 58.147 37.500 5.01 0.00 0.00 2.77
710 827 1.434513 AAAGCCAGGTCCCACCATCA 61.435 55.000 0.00 0.00 41.95 3.07
862 2034 1.607251 GCGCGCCACCTATAAATACCT 60.607 52.381 23.24 0.00 0.00 3.08
893 2074 0.334676 CCTCCTCTCTCCCACTCAGT 59.665 60.000 0.00 0.00 0.00 3.41
948 2136 2.507102 CACTCTACGCACGCCCAG 60.507 66.667 0.00 0.00 0.00 4.45
964 2183 3.078097 GCCCAGAGAAAGAGGAAGAAAC 58.922 50.000 0.00 0.00 0.00 2.78
971 2215 6.015519 CAGAGAAAGAGGAAGAAACAGAGAGA 60.016 42.308 0.00 0.00 0.00 3.10
977 2235 6.074648 AGAGGAAGAAACAGAGAGAAAGAGA 58.925 40.000 0.00 0.00 0.00 3.10
1424 2983 2.403259 CGGGACCAAAATTTTGCTCAC 58.597 47.619 22.90 19.05 36.86 3.51
1449 3008 6.717084 CCAATCAGATTTCTAGGATTTACCCC 59.283 42.308 0.00 0.00 40.05 4.95
1486 3045 9.825972 GTCAGTAGTAGTAGTAGTATCTAGTCG 57.174 40.741 0.00 0.00 0.00 4.18
1487 3046 9.785982 TCAGTAGTAGTAGTAGTATCTAGTCGA 57.214 37.037 0.00 0.00 0.00 4.20
1489 3048 9.231297 AGTAGTAGTAGTAGTATCTAGTCGAGG 57.769 40.741 0.00 0.00 0.00 4.63
1490 3049 9.226606 GTAGTAGTAGTAGTATCTAGTCGAGGA 57.773 40.741 0.00 0.00 0.00 3.71
1491 3050 8.340618 AGTAGTAGTAGTATCTAGTCGAGGAG 57.659 42.308 0.00 0.00 0.00 3.69
1492 3051 8.163408 AGTAGTAGTAGTATCTAGTCGAGGAGA 58.837 40.741 0.00 0.00 0.00 3.71
1493 3052 8.960591 GTAGTAGTAGTATCTAGTCGAGGAGAT 58.039 40.741 12.39 12.39 36.40 2.75
1495 3054 9.182214 AGTAGTAGTATCTAGTCGAGGAGATAG 57.818 40.741 13.89 0.86 35.76 2.08
1496 3055 6.870769 AGTAGTATCTAGTCGAGGAGATAGC 58.129 44.000 13.89 10.19 35.76 2.97
1497 3056 5.093849 AGTATCTAGTCGAGGAGATAGCC 57.906 47.826 13.89 6.35 35.76 3.93
1498 3057 2.459060 TCTAGTCGAGGAGATAGCCG 57.541 55.000 0.00 0.00 0.00 5.52
1499 3058 1.002201 TCTAGTCGAGGAGATAGCCGG 59.998 57.143 0.00 0.00 0.00 6.13
1500 3059 0.605860 TAGTCGAGGAGATAGCCGGC 60.606 60.000 21.89 21.89 0.00 6.13
1501 3060 2.978565 TCGAGGAGATAGCCGGCG 60.979 66.667 23.20 0.00 33.78 6.46
1502 3061 4.044484 CGAGGAGATAGCCGGCGG 62.044 72.222 24.35 24.35 0.00 6.13
1503 3062 3.686045 GAGGAGATAGCCGGCGGG 61.686 72.222 29.48 9.71 0.00 6.13
1599 3210 3.733077 GCCTGCTCTCCAATTCGATTTTG 60.733 47.826 0.00 0.00 0.00 2.44
1612 3223 6.695292 ATTCGATTTTGCACTCACAAATTC 57.305 33.333 0.00 0.00 39.18 2.17
1651 3262 4.035814 GGTGGGTGGTATTAACTACTCCT 58.964 47.826 0.00 0.00 36.77 3.69
1652 3263 4.472470 GGTGGGTGGTATTAACTACTCCTT 59.528 45.833 0.00 0.00 36.77 3.36
1653 3264 5.396101 GGTGGGTGGTATTAACTACTCCTTC 60.396 48.000 0.00 0.00 36.77 3.46
1654 3265 4.718276 TGGGTGGTATTAACTACTCCTTCC 59.282 45.833 0.00 0.00 36.77 3.46
1655 3266 4.202192 GGGTGGTATTAACTACTCCTTCCG 60.202 50.000 0.00 0.00 37.27 4.30
1656 3267 4.403752 GGTGGTATTAACTACTCCTTCCGT 59.596 45.833 0.00 0.00 37.27 4.69
1657 3268 5.451103 GGTGGTATTAACTACTCCTTCCGTC 60.451 48.000 0.00 0.00 37.27 4.79
1658 3269 4.646492 TGGTATTAACTACTCCTTCCGTCC 59.354 45.833 0.00 0.00 0.00 4.79
1659 3270 4.038522 GGTATTAACTACTCCTTCCGTCCC 59.961 50.000 0.00 0.00 0.00 4.46
1660 3271 2.905415 TAACTACTCCTTCCGTCCCA 57.095 50.000 0.00 0.00 0.00 4.37
1661 3272 2.249309 AACTACTCCTTCCGTCCCAT 57.751 50.000 0.00 0.00 0.00 4.00
1662 3273 3.393426 AACTACTCCTTCCGTCCCATA 57.607 47.619 0.00 0.00 0.00 2.74
1663 3274 3.393426 ACTACTCCTTCCGTCCCATAA 57.607 47.619 0.00 0.00 0.00 1.90
1664 3275 3.924922 ACTACTCCTTCCGTCCCATAAT 58.075 45.455 0.00 0.00 0.00 1.28
1665 3276 3.641906 ACTACTCCTTCCGTCCCATAATG 59.358 47.826 0.00 0.00 0.00 1.90
1666 3277 1.141053 ACTCCTTCCGTCCCATAATGC 59.859 52.381 0.00 0.00 0.00 3.56
1667 3278 1.140852 CTCCTTCCGTCCCATAATGCA 59.859 52.381 0.00 0.00 0.00 3.96
1668 3279 1.562008 TCCTTCCGTCCCATAATGCAA 59.438 47.619 0.00 0.00 0.00 4.08
1669 3280 2.025793 TCCTTCCGTCCCATAATGCAAA 60.026 45.455 0.00 0.00 0.00 3.68
1670 3281 2.099098 CCTTCCGTCCCATAATGCAAAC 59.901 50.000 0.00 0.00 0.00 2.93
1671 3282 1.374560 TCCGTCCCATAATGCAAACG 58.625 50.000 0.00 0.00 0.00 3.60
1672 3283 1.091537 CCGTCCCATAATGCAAACGT 58.908 50.000 0.00 0.00 0.00 3.99
1673 3284 1.470890 CCGTCCCATAATGCAAACGTT 59.529 47.619 0.00 0.00 0.00 3.99
1674 3285 2.094957 CCGTCCCATAATGCAAACGTTT 60.095 45.455 7.96 7.96 0.00 3.60
1675 3286 3.570559 CGTCCCATAATGCAAACGTTTT 58.429 40.909 11.66 0.00 0.00 2.43
1676 3287 3.984633 CGTCCCATAATGCAAACGTTTTT 59.015 39.130 11.66 6.24 0.00 1.94
1698 3309 3.611433 GCCATAGCTTGCAGAAACG 57.389 52.632 0.00 0.00 35.50 3.60
1699 3310 0.804989 GCCATAGCTTGCAGAAACGT 59.195 50.000 0.00 0.00 35.50 3.99
1700 3311 1.202076 GCCATAGCTTGCAGAAACGTC 60.202 52.381 0.00 0.00 35.50 4.34
1701 3312 2.350522 CCATAGCTTGCAGAAACGTCT 58.649 47.619 0.00 0.00 32.85 4.18
1702 3313 2.744202 CCATAGCTTGCAGAAACGTCTT 59.256 45.455 0.00 0.00 28.78 3.01
1703 3314 3.932710 CCATAGCTTGCAGAAACGTCTTA 59.067 43.478 0.00 0.00 28.78 2.10
1704 3315 4.572389 CCATAGCTTGCAGAAACGTCTTAT 59.428 41.667 0.00 0.00 28.78 1.73
1705 3316 5.753438 CCATAGCTTGCAGAAACGTCTTATA 59.247 40.000 0.00 0.00 28.78 0.98
1706 3317 6.425114 CCATAGCTTGCAGAAACGTCTTATAT 59.575 38.462 0.00 0.00 28.78 0.86
1707 3318 7.041780 CCATAGCTTGCAGAAACGTCTTATATT 60.042 37.037 0.00 0.00 28.78 1.28
1708 3319 6.111768 AGCTTGCAGAAACGTCTTATATTG 57.888 37.500 0.00 0.00 28.78 1.90
1709 3320 5.643777 AGCTTGCAGAAACGTCTTATATTGT 59.356 36.000 0.00 0.00 28.78 2.71
1710 3321 5.734498 GCTTGCAGAAACGTCTTATATTGTG 59.266 40.000 0.00 0.00 28.78 3.33
1711 3322 6.402118 GCTTGCAGAAACGTCTTATATTGTGA 60.402 38.462 0.00 0.00 28.78 3.58
1712 3323 6.647212 TGCAGAAACGTCTTATATTGTGAG 57.353 37.500 0.00 0.00 28.78 3.51
1713 3324 6.394809 TGCAGAAACGTCTTATATTGTGAGA 58.605 36.000 0.00 0.00 28.78 3.27
1714 3325 6.310467 TGCAGAAACGTCTTATATTGTGAGAC 59.690 38.462 0.00 0.00 39.42 3.36
1720 3331 4.872664 GTCTTATATTGTGAGACGGAGGG 58.127 47.826 0.00 0.00 34.29 4.30
1721 3332 4.583489 GTCTTATATTGTGAGACGGAGGGA 59.417 45.833 0.00 0.00 34.29 4.20
1722 3333 4.827835 TCTTATATTGTGAGACGGAGGGAG 59.172 45.833 0.00 0.00 0.00 4.30
1723 3334 2.526888 TATTGTGAGACGGAGGGAGT 57.473 50.000 0.00 0.00 0.00 3.85
1724 3335 2.526888 ATTGTGAGACGGAGGGAGTA 57.473 50.000 0.00 0.00 0.00 2.59
1725 3336 1.542492 TTGTGAGACGGAGGGAGTAC 58.458 55.000 0.00 0.00 0.00 2.73
1726 3337 0.697079 TGTGAGACGGAGGGAGTACT 59.303 55.000 0.00 0.00 0.00 2.73
1727 3338 1.339824 TGTGAGACGGAGGGAGTACTC 60.340 57.143 14.87 14.87 36.76 2.59
1736 3347 4.759893 GGAGTACTCCCCAGTCGT 57.240 61.111 28.87 0.00 43.94 4.34
1737 3348 2.491291 GGAGTACTCCCCAGTCGTC 58.509 63.158 28.87 2.53 43.94 4.20
1738 3349 1.375098 GGAGTACTCCCCAGTCGTCG 61.375 65.000 28.87 0.00 43.94 5.12
1739 3350 0.676151 GAGTACTCCCCAGTCGTCGT 60.676 60.000 12.13 0.00 33.62 4.34
1740 3351 0.676151 AGTACTCCCCAGTCGTCGTC 60.676 60.000 0.00 0.00 33.62 4.20
1741 3352 0.957395 GTACTCCCCAGTCGTCGTCA 60.957 60.000 0.00 0.00 33.62 4.35
1742 3353 0.034767 TACTCCCCAGTCGTCGTCAT 60.035 55.000 0.00 0.00 33.62 3.06
1743 3354 0.898789 ACTCCCCAGTCGTCGTCATT 60.899 55.000 0.00 0.00 0.00 2.57
1744 3355 0.246635 CTCCCCAGTCGTCGTCATTT 59.753 55.000 0.00 0.00 0.00 2.32
1745 3356 0.682852 TCCCCAGTCGTCGTCATTTT 59.317 50.000 0.00 0.00 0.00 1.82
1746 3357 0.796312 CCCCAGTCGTCGTCATTTTG 59.204 55.000 0.00 0.00 0.00 2.44
1747 3358 1.606994 CCCCAGTCGTCGTCATTTTGA 60.607 52.381 0.00 0.00 0.00 2.69
1748 3359 1.726791 CCCAGTCGTCGTCATTTTGAG 59.273 52.381 0.00 0.00 0.00 3.02
1749 3360 2.609491 CCCAGTCGTCGTCATTTTGAGA 60.609 50.000 0.00 0.00 0.00 3.27
1750 3361 2.408704 CCAGTCGTCGTCATTTTGAGAC 59.591 50.000 0.00 0.00 0.00 3.36
1751 3362 3.309388 CAGTCGTCGTCATTTTGAGACT 58.691 45.455 0.00 0.00 37.90 3.24
1752 3363 3.120286 CAGTCGTCGTCATTTTGAGACTG 59.880 47.826 8.06 8.06 44.93 3.51
1753 3364 3.050619 GTCGTCGTCATTTTGAGACTGT 58.949 45.455 0.00 0.00 33.89 3.55
1754 3365 3.119792 GTCGTCGTCATTTTGAGACTGTC 59.880 47.826 0.00 0.00 33.89 3.51
1755 3366 3.004419 TCGTCGTCATTTTGAGACTGTCT 59.996 43.478 10.66 10.66 33.89 3.41
1756 3367 3.362237 CGTCGTCATTTTGAGACTGTCTC 59.638 47.826 26.86 26.86 43.65 3.36
1757 3368 4.551388 GTCGTCATTTTGAGACTGTCTCT 58.449 43.478 31.34 14.01 43.73 3.10
1758 3369 4.619336 GTCGTCATTTTGAGACTGTCTCTC 59.381 45.833 31.34 13.48 43.73 3.20
1759 3370 4.520874 TCGTCATTTTGAGACTGTCTCTCT 59.479 41.667 31.34 14.92 45.38 3.10
1760 3371 4.856487 CGTCATTTTGAGACTGTCTCTCTC 59.144 45.833 31.34 12.50 45.38 3.20
1761 3372 4.856487 GTCATTTTGAGACTGTCTCTCTCG 59.144 45.833 31.34 18.81 45.38 4.04
1762 3373 4.520874 TCATTTTGAGACTGTCTCTCTCGT 59.479 41.667 31.34 15.30 45.38 4.18
1763 3374 5.705905 TCATTTTGAGACTGTCTCTCTCGTA 59.294 40.000 31.34 13.02 45.38 3.43
1764 3375 5.614923 TTTTGAGACTGTCTCTCTCGTAG 57.385 43.478 31.34 0.00 45.38 3.51
1765 3376 3.965379 TGAGACTGTCTCTCTCGTAGT 57.035 47.619 31.34 0.00 45.38 2.73
1766 3377 5.402997 TTGAGACTGTCTCTCTCGTAGTA 57.597 43.478 31.34 11.08 45.38 1.82
1767 3378 5.001237 TGAGACTGTCTCTCTCGTAGTAG 57.999 47.826 31.34 0.00 45.38 2.57
1768 3379 4.463539 TGAGACTGTCTCTCTCGTAGTAGT 59.536 45.833 31.34 0.00 45.38 2.73
1769 3380 5.651576 TGAGACTGTCTCTCTCGTAGTAGTA 59.348 44.000 31.34 9.79 45.38 1.82
1770 3381 5.894807 AGACTGTCTCTCTCGTAGTAGTAC 58.105 45.833 4.06 0.00 0.00 2.73
1771 3382 5.653769 AGACTGTCTCTCTCGTAGTAGTACT 59.346 44.000 8.14 8.14 0.00 2.73
1772 3383 5.894807 ACTGTCTCTCTCGTAGTAGTACTC 58.105 45.833 5.96 0.00 0.00 2.59
1773 3384 5.653769 ACTGTCTCTCTCGTAGTAGTACTCT 59.346 44.000 5.96 0.00 0.00 3.24
1774 3385 6.135290 TGTCTCTCTCGTAGTAGTACTCTC 57.865 45.833 5.96 0.92 0.00 3.20
1775 3386 5.067674 TGTCTCTCTCGTAGTAGTACTCTCC 59.932 48.000 5.96 0.00 0.00 3.71
1776 3387 5.067674 GTCTCTCTCGTAGTAGTACTCTCCA 59.932 48.000 5.96 0.00 0.00 3.86
1777 3388 5.834742 TCTCTCTCGTAGTAGTACTCTCCAT 59.165 44.000 5.96 0.00 0.00 3.41
1778 3389 5.845103 TCTCTCGTAGTAGTACTCTCCATG 58.155 45.833 5.96 0.00 0.00 3.66
1779 3390 5.597594 TCTCTCGTAGTAGTACTCTCCATGA 59.402 44.000 5.96 0.00 0.00 3.07
1780 3391 6.268158 TCTCTCGTAGTAGTACTCTCCATGAT 59.732 42.308 5.96 0.00 0.00 2.45
1781 3392 6.224584 TCTCGTAGTAGTACTCTCCATGATG 58.775 44.000 5.96 0.00 0.00 3.07
1782 3393 6.041751 TCTCGTAGTAGTACTCTCCATGATGA 59.958 42.308 5.96 0.00 0.00 2.92
1783 3394 6.224584 TCGTAGTAGTACTCTCCATGATGAG 58.775 44.000 5.96 11.62 36.47 2.90
1784 3395 5.992829 CGTAGTAGTACTCTCCATGATGAGT 59.007 44.000 19.30 19.30 44.56 3.41
1785 3396 6.146510 CGTAGTAGTACTCTCCATGATGAGTC 59.853 46.154 19.04 12.91 41.92 3.36
1786 3397 6.007485 AGTAGTACTCTCCATGATGAGTCA 57.993 41.667 19.04 0.00 41.92 3.41
1787 3398 5.825679 AGTAGTACTCTCCATGATGAGTCAC 59.174 44.000 19.04 15.69 41.92 3.67
1788 3399 3.957497 AGTACTCTCCATGATGAGTCACC 59.043 47.826 19.04 11.37 41.92 4.02
1789 3400 2.825223 ACTCTCCATGATGAGTCACCA 58.175 47.619 12.67 0.00 39.04 4.17
1790 3401 3.176411 ACTCTCCATGATGAGTCACCAA 58.824 45.455 12.67 0.00 39.04 3.67
1791 3402 3.197333 ACTCTCCATGATGAGTCACCAAG 59.803 47.826 12.67 0.00 39.04 3.61
1792 3403 2.093288 TCTCCATGATGAGTCACCAAGC 60.093 50.000 0.00 0.00 37.14 4.01
1793 3404 1.629861 TCCATGATGAGTCACCAAGCA 59.370 47.619 0.00 0.00 37.14 3.91
1794 3405 1.741706 CCATGATGAGTCACCAAGCAC 59.258 52.381 0.00 0.00 37.14 4.40
1795 3406 2.617276 CCATGATGAGTCACCAAGCACT 60.617 50.000 0.00 0.00 37.14 4.40
1814 3425 2.154798 TAGAGCAACTCCAACGCGCT 62.155 55.000 5.73 0.00 39.25 5.92
1825 3436 1.075542 CAACGCGCTGACCTATTTCA 58.924 50.000 5.73 0.00 0.00 2.69
1830 3441 1.538204 GCGCTGACCTATTTCATCCGA 60.538 52.381 0.00 0.00 0.00 4.55
1832 3443 2.034685 CGCTGACCTATTTCATCCGAGA 59.965 50.000 0.00 0.00 0.00 4.04
1837 3448 4.101585 TGACCTATTTCATCCGAGAGCATT 59.898 41.667 0.00 0.00 0.00 3.56
1845 3456 3.118298 TCATCCGAGAGCATTCATTTGGA 60.118 43.478 0.00 0.00 0.00 3.53
1852 3463 0.381801 GCATTCATTTGGATCGCCGT 59.618 50.000 0.00 0.00 36.79 5.68
1915 3526 1.607178 TCCACTTTCCGTCCGCCTA 60.607 57.895 0.00 0.00 0.00 3.93
1916 3527 0.974010 TCCACTTTCCGTCCGCCTAT 60.974 55.000 0.00 0.00 0.00 2.57
1920 3531 0.314302 CTTTCCGTCCGCCTATCGAT 59.686 55.000 2.16 2.16 41.67 3.59
1932 3543 2.171840 CCTATCGATCCATTCCCGACT 58.828 52.381 0.00 0.00 35.02 4.18
1936 3547 2.039418 TCGATCCATTCCCGACTCAAT 58.961 47.619 0.00 0.00 0.00 2.57
1956 3568 5.009110 TCAATTTTGTACCTCATTTGCGTCA 59.991 36.000 0.00 0.00 0.00 4.35
1957 3569 4.902443 TTTTGTACCTCATTTGCGTCAA 57.098 36.364 0.00 0.00 0.00 3.18
1969 3581 4.696172 CGTCAACGCGAACACGGC 62.696 66.667 15.93 0.00 37.37 5.68
2000 3615 3.400054 GCGTGCCTACCCCTCCTT 61.400 66.667 0.00 0.00 0.00 3.36
2008 3623 2.840203 CTACCCCTCCTTCTGGCCCA 62.840 65.000 0.00 0.00 0.00 5.36
2026 3641 2.336088 CCAGTTGGTGGCAAAGCG 59.664 61.111 0.00 0.00 40.39 4.68
2041 3656 4.690159 GCGACCGGCATTTTCATC 57.310 55.556 0.00 0.00 42.87 2.92
2043 3658 1.653094 GCGACCGGCATTTTCATCCA 61.653 55.000 0.00 0.00 42.87 3.41
2051 3666 3.369261 CGGCATTTTCATCCAATTTCCCA 60.369 43.478 0.00 0.00 0.00 4.37
2055 3670 6.380995 GCATTTTCATCCAATTTCCCAAAAC 58.619 36.000 0.00 0.00 0.00 2.43
2056 3671 6.570186 GCATTTTCATCCAATTTCCCAAAACC 60.570 38.462 0.00 0.00 0.00 3.27
2057 3672 5.903198 TTTCATCCAATTTCCCAAAACCT 57.097 34.783 0.00 0.00 0.00 3.50
2109 3737 0.465705 GGATGAAGACCTCGATGCCA 59.534 55.000 0.00 0.00 0.00 4.92
2171 3799 3.373565 CCCTCCGGCAAAGGCAAC 61.374 66.667 0.00 0.00 43.71 4.17
2213 3841 3.804193 GCGCCGCCCAAGAAGAAG 61.804 66.667 0.00 0.00 0.00 2.85
2214 3842 2.047274 CGCCGCCCAAGAAGAAGA 60.047 61.111 0.00 0.00 0.00 2.87
2215 3843 1.671054 CGCCGCCCAAGAAGAAGAA 60.671 57.895 0.00 0.00 0.00 2.52
2216 3844 1.639298 CGCCGCCCAAGAAGAAGAAG 61.639 60.000 0.00 0.00 0.00 2.85
2217 3845 0.321653 GCCGCCCAAGAAGAAGAAGA 60.322 55.000 0.00 0.00 0.00 2.87
2218 3846 1.882352 GCCGCCCAAGAAGAAGAAGAA 60.882 52.381 0.00 0.00 0.00 2.52
2219 3847 2.079925 CCGCCCAAGAAGAAGAAGAAG 58.920 52.381 0.00 0.00 0.00 2.85
2220 3848 2.289694 CCGCCCAAGAAGAAGAAGAAGA 60.290 50.000 0.00 0.00 0.00 2.87
2221 3849 3.403038 CGCCCAAGAAGAAGAAGAAGAA 58.597 45.455 0.00 0.00 0.00 2.52
2222 3850 3.434984 CGCCCAAGAAGAAGAAGAAGAAG 59.565 47.826 0.00 0.00 0.00 2.85
2223 3851 4.646572 GCCCAAGAAGAAGAAGAAGAAGA 58.353 43.478 0.00 0.00 0.00 2.87
2224 3852 5.066593 GCCCAAGAAGAAGAAGAAGAAGAA 58.933 41.667 0.00 0.00 0.00 2.52
2241 3869 6.112927 AGAAGAAGAAGAAGAAGCTGACAT 57.887 37.500 0.00 0.00 0.00 3.06
2242 3870 6.532826 AGAAGAAGAAGAAGAAGCTGACATT 58.467 36.000 0.00 0.00 0.00 2.71
2245 3873 2.999355 AGAAGAAGAAGCTGACATTCGC 59.001 45.455 0.00 0.00 0.00 4.70
2273 3901 1.734477 CGTGCAGTCGACCAAGAGG 60.734 63.158 13.01 0.00 42.21 3.69
2280 3908 0.966920 GTCGACCAAGAGGAAGGACA 59.033 55.000 3.51 0.00 38.69 4.02
2314 3942 1.298859 GACGCAAGGGACGAAGCAAT 61.299 55.000 0.00 0.00 46.39 3.56
2316 3944 1.298157 CGCAAGGGACGAAGCAATGA 61.298 55.000 0.00 0.00 0.00 2.57
2354 3982 4.479993 GCCGCACAGCAGGAGGAT 62.480 66.667 4.51 0.00 0.00 3.24
2369 3997 0.469917 AGGATACCAATGCCCGAGTG 59.530 55.000 0.00 0.00 37.17 3.51
2370 3998 0.535102 GGATACCAATGCCCGAGTGG 60.535 60.000 0.00 0.00 45.95 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 2.512885 GATGTCGTGCTCATGCTTTTG 58.487 47.619 0.00 0.00 40.48 2.44
5 6 0.723414 CGATGTCGTGCTCATGCTTT 59.277 50.000 0.00 0.00 40.48 3.51
7 8 0.803768 GTCGATGTCGTGCTCATGCT 60.804 55.000 2.04 0.00 40.80 3.79
8 9 0.803768 AGTCGATGTCGTGCTCATGC 60.804 55.000 2.04 0.00 40.80 4.06
9 10 1.195347 GAGTCGATGTCGTGCTCATG 58.805 55.000 17.53 0.00 39.80 3.07
10 11 0.811281 TGAGTCGATGTCGTGCTCAT 59.189 50.000 19.60 0.00 42.29 2.90
11 12 0.811281 ATGAGTCGATGTCGTGCTCA 59.189 50.000 22.90 22.90 46.42 4.26
12 13 1.471964 GATGAGTCGATGTCGTGCTC 58.528 55.000 16.42 16.42 40.13 4.26
13 14 0.101399 GGATGAGTCGATGTCGTGCT 59.899 55.000 2.04 2.61 40.80 4.40
14 15 0.179137 TGGATGAGTCGATGTCGTGC 60.179 55.000 2.04 0.00 40.80 5.34
15 16 1.550065 GTGGATGAGTCGATGTCGTG 58.450 55.000 2.04 0.00 40.80 4.35
16 17 0.456221 GGTGGATGAGTCGATGTCGT 59.544 55.000 2.04 0.00 40.80 4.34
17 18 0.249073 GGGTGGATGAGTCGATGTCG 60.249 60.000 0.00 0.00 41.45 4.35
18 19 0.824109 TGGGTGGATGAGTCGATGTC 59.176 55.000 0.00 0.00 0.00 3.06
19 20 0.537188 GTGGGTGGATGAGTCGATGT 59.463 55.000 0.00 0.00 0.00 3.06
20 21 0.528466 CGTGGGTGGATGAGTCGATG 60.528 60.000 0.00 0.00 0.00 3.84
21 22 0.683179 TCGTGGGTGGATGAGTCGAT 60.683 55.000 0.00 0.00 0.00 3.59
22 23 0.896479 TTCGTGGGTGGATGAGTCGA 60.896 55.000 0.00 0.00 0.00 4.20
23 24 0.736325 GTTCGTGGGTGGATGAGTCG 60.736 60.000 0.00 0.00 0.00 4.18
24 25 0.320374 TGTTCGTGGGTGGATGAGTC 59.680 55.000 0.00 0.00 0.00 3.36
25 26 0.034896 GTGTTCGTGGGTGGATGAGT 59.965 55.000 0.00 0.00 0.00 3.41
26 27 0.673644 GGTGTTCGTGGGTGGATGAG 60.674 60.000 0.00 0.00 0.00 2.90
27 28 1.373435 GGTGTTCGTGGGTGGATGA 59.627 57.895 0.00 0.00 0.00 2.92
28 29 1.674322 GGGTGTTCGTGGGTGGATG 60.674 63.158 0.00 0.00 0.00 3.51
29 30 1.710996 TTGGGTGTTCGTGGGTGGAT 61.711 55.000 0.00 0.00 0.00 3.41
30 31 1.923006 TTTGGGTGTTCGTGGGTGGA 61.923 55.000 0.00 0.00 0.00 4.02
31 32 1.452145 CTTTGGGTGTTCGTGGGTGG 61.452 60.000 0.00 0.00 0.00 4.61
32 33 1.452145 CCTTTGGGTGTTCGTGGGTG 61.452 60.000 0.00 0.00 0.00 4.61
33 34 1.152839 CCTTTGGGTGTTCGTGGGT 60.153 57.895 0.00 0.00 0.00 4.51
34 35 2.561037 GCCTTTGGGTGTTCGTGGG 61.561 63.158 0.00 0.00 34.45 4.61
35 36 2.561037 GGCCTTTGGGTGTTCGTGG 61.561 63.158 0.00 0.00 34.45 4.94
36 37 2.903547 CGGCCTTTGGGTGTTCGTG 61.904 63.158 0.00 0.00 34.45 4.35
37 38 2.593436 CGGCCTTTGGGTGTTCGT 60.593 61.111 0.00 0.00 34.45 3.85
38 39 4.038080 GCGGCCTTTGGGTGTTCG 62.038 66.667 0.00 0.00 34.45 3.95
39 40 3.680786 GGCGGCCTTTGGGTGTTC 61.681 66.667 12.87 0.00 34.45 3.18
40 41 4.531426 TGGCGGCCTTTGGGTGTT 62.531 61.111 21.46 0.00 34.45 3.32
47 48 4.388499 ATCGACGTGGCGGCCTTT 62.388 61.111 21.46 3.76 0.00 3.11
48 49 4.814294 GATCGACGTGGCGGCCTT 62.814 66.667 21.46 4.16 0.00 4.35
59 60 0.847035 GCTCCGAATGAACGATCGAC 59.153 55.000 24.34 15.37 41.43 4.20
60 61 0.248907 GGCTCCGAATGAACGATCGA 60.249 55.000 24.34 0.00 41.43 3.59
61 62 0.527600 TGGCTCCGAATGAACGATCG 60.528 55.000 14.88 14.88 38.74 3.69
62 63 1.795286 GATGGCTCCGAATGAACGATC 59.205 52.381 0.00 0.00 35.09 3.69
63 64 1.541233 GGATGGCTCCGAATGAACGAT 60.541 52.381 0.00 0.00 35.09 3.73
64 65 0.179084 GGATGGCTCCGAATGAACGA 60.179 55.000 0.00 0.00 35.09 3.85
65 66 1.160329 GGGATGGCTCCGAATGAACG 61.160 60.000 0.00 0.00 43.11 3.95
66 67 0.107214 TGGGATGGCTCCGAATGAAC 60.107 55.000 0.00 0.00 43.11 3.18
67 68 0.623194 TTGGGATGGCTCCGAATGAA 59.377 50.000 0.00 0.00 43.11 2.57
68 69 0.181114 CTTGGGATGGCTCCGAATGA 59.819 55.000 2.10 0.00 43.11 2.57
69 70 1.450531 GCTTGGGATGGCTCCGAATG 61.451 60.000 2.10 0.01 43.11 2.67
70 71 1.152881 GCTTGGGATGGCTCCGAAT 60.153 57.895 2.10 0.00 43.11 3.34
71 72 2.272146 GCTTGGGATGGCTCCGAA 59.728 61.111 0.00 0.00 43.11 4.30
72 73 3.797353 GGCTTGGGATGGCTCCGA 61.797 66.667 0.00 0.00 43.11 4.55
73 74 4.883354 GGGCTTGGGATGGCTCCG 62.883 72.222 0.00 0.00 43.11 4.63
74 75 4.529731 GGGGCTTGGGATGGCTCC 62.530 72.222 0.00 0.00 42.19 4.70
75 76 3.424105 AGGGGCTTGGGATGGCTC 61.424 66.667 0.00 0.00 0.00 4.70
76 77 3.747579 CAGGGGCTTGGGATGGCT 61.748 66.667 0.00 0.00 0.00 4.75
77 78 4.847367 CCAGGGGCTTGGGATGGC 62.847 72.222 1.30 0.00 34.46 4.40
109 110 2.632996 TGAAAACAGATGGAGTCGACCT 59.367 45.455 13.01 0.00 0.00 3.85
111 112 3.372206 CCATGAAAACAGATGGAGTCGAC 59.628 47.826 7.70 7.70 41.63 4.20
120 121 4.549458 CGAACTTTGCCATGAAAACAGAT 58.451 39.130 0.00 0.00 0.00 2.90
121 122 3.795150 GCGAACTTTGCCATGAAAACAGA 60.795 43.478 0.00 0.00 0.00 3.41
124 125 2.472488 CAGCGAACTTTGCCATGAAAAC 59.528 45.455 0.00 0.00 0.00 2.43
131 133 1.806542 GAGATTCAGCGAACTTTGCCA 59.193 47.619 0.00 0.00 0.00 4.92
148 150 1.141185 TCTAGAGAGGGCGATGGAGA 58.859 55.000 0.00 0.00 0.00 3.71
153 155 2.008242 ATGCTTCTAGAGAGGGCGAT 57.992 50.000 0.00 0.00 0.00 4.58
161 163 2.126467 GAGCGAGCAATGCTTCTAGAG 58.874 52.381 9.91 0.00 44.18 2.43
167 169 1.002868 AGTGGAGCGAGCAATGCTT 60.003 52.632 9.91 0.00 44.18 3.91
170 175 1.376543 AATCAGTGGAGCGAGCAATG 58.623 50.000 0.00 0.00 0.00 2.82
185 190 2.191400 ACTAGGCAGCTGGAGAAATCA 58.809 47.619 17.12 0.00 0.00 2.57
189 194 2.103373 CACTACTAGGCAGCTGGAGAA 58.897 52.381 17.12 0.00 0.00 2.87
191 196 0.103937 GCACTACTAGGCAGCTGGAG 59.896 60.000 17.12 0.00 0.00 3.86
192 197 0.614697 TGCACTACTAGGCAGCTGGA 60.615 55.000 17.12 0.00 34.58 3.86
193 198 0.467384 ATGCACTACTAGGCAGCTGG 59.533 55.000 17.12 0.31 44.24 4.85
195 200 0.179062 GCATGCACTACTAGGCAGCT 60.179 55.000 14.21 0.00 44.24 4.24
196 201 0.462581 TGCATGCACTACTAGGCAGC 60.463 55.000 18.46 1.18 44.24 5.25
198 203 1.475571 CCATGCATGCACTACTAGGCA 60.476 52.381 25.37 0.00 45.23 4.75
202 216 0.839277 AGCCCATGCATGCACTACTA 59.161 50.000 25.37 0.00 41.13 1.82
205 219 2.433662 TTAAGCCCATGCATGCACTA 57.566 45.000 25.37 0.00 41.13 2.74
228 242 1.487231 GCGCGTACTGTTGAGTGTG 59.513 57.895 8.43 0.00 33.21 3.82
230 244 2.716828 CGGCGCGTACTGTTGAGTG 61.717 63.158 8.43 0.00 33.21 3.51
269 283 1.445410 TCACCTGTACATGCGACGC 60.445 57.895 14.19 14.19 0.00 5.19
284 298 2.060326 TGTAAGTACTGCGCTGTCAC 57.940 50.000 23.87 18.11 0.00 3.67
299 313 3.193267 GCTGATGATGGCCAACTTTGTAA 59.807 43.478 10.96 0.00 0.00 2.41
300 314 2.754552 GCTGATGATGGCCAACTTTGTA 59.245 45.455 10.96 0.00 0.00 2.41
301 315 1.547372 GCTGATGATGGCCAACTTTGT 59.453 47.619 10.96 0.00 0.00 2.83
302 316 1.822990 AGCTGATGATGGCCAACTTTG 59.177 47.619 10.96 4.10 0.00 2.77
328 343 4.376176 CAAACGGACGGCGGGGTA 62.376 66.667 13.24 0.00 0.00 3.69
331 346 3.719144 GAACAAACGGACGGCGGG 61.719 66.667 13.24 2.09 0.00 6.13
340 355 4.086126 CGCATTTGAAAGTCAGAACAAACG 60.086 41.667 0.00 0.00 35.58 3.60
345 361 4.474226 AGACGCATTTGAAAGTCAGAAC 57.526 40.909 0.00 0.00 36.18 3.01
347 363 4.021456 TCCTAGACGCATTTGAAAGTCAGA 60.021 41.667 0.00 0.00 36.18 3.27
349 365 4.265904 TCCTAGACGCATTTGAAAGTCA 57.734 40.909 0.00 0.00 36.18 3.41
351 367 4.832248 TGATCCTAGACGCATTTGAAAGT 58.168 39.130 0.00 0.00 0.00 2.66
354 370 3.616821 CGTTGATCCTAGACGCATTTGAA 59.383 43.478 0.00 0.00 0.00 2.69
355 371 3.119280 TCGTTGATCCTAGACGCATTTGA 60.119 43.478 0.00 0.00 36.77 2.69
362 385 0.317103 CGCCTCGTTGATCCTAGACG 60.317 60.000 0.00 0.00 38.09 4.18
389 412 2.270874 CTTGGTTCAGGGGATCGGGG 62.271 65.000 0.00 0.00 0.00 5.73
484 552 2.568956 TGGAGGAGATTCAGTGAACCTG 59.431 50.000 16.14 0.00 42.97 4.00
568 639 1.202313 GGACACTCGAGATTCCGGAAG 60.202 57.143 23.47 10.12 0.00 3.46
572 643 4.692129 CGGACACTCGAGATTCCG 57.308 61.111 30.87 30.87 44.65 4.30
573 644 0.173708 AAGCGGACACTCGAGATTCC 59.826 55.000 21.68 21.05 0.00 3.01
585 656 1.289800 GGGTGAAACGAGAAGCGGAC 61.290 60.000 0.00 0.00 46.49 4.79
690 807 0.967380 GATGGTGGGACCTGGCTTTG 60.967 60.000 0.00 0.00 39.58 2.77
694 811 0.967380 CTTTGATGGTGGGACCTGGC 60.967 60.000 0.00 0.00 39.58 4.85
710 827 3.615709 GCTGGGTTTGGCCGCTTT 61.616 61.111 0.00 0.00 38.44 3.51
893 2074 4.400109 GGCTGCGACGTCTGACGA 62.400 66.667 33.99 12.74 46.05 4.20
905 2086 1.578423 GCTTGTTCTCTGTGGCTGC 59.422 57.895 0.00 0.00 0.00 5.25
948 2136 6.339587 TCTCTCTGTTTCTTCCTCTTTCTC 57.660 41.667 0.00 0.00 0.00 2.87
964 2183 6.183360 CGGATATCGATCTCTCTTTCTCTCTG 60.183 46.154 0.00 0.00 42.43 3.35
971 2215 4.822350 TCACACGGATATCGATCTCTCTTT 59.178 41.667 0.00 0.00 42.43 2.52
977 2235 4.702131 TGATGATCACACGGATATCGATCT 59.298 41.667 0.00 0.00 42.43 2.75
1296 2832 4.537433 GCGCTGGCGAGGAAGGAT 62.537 66.667 19.31 0.00 42.83 3.24
1413 2972 7.001099 AGAAATCTGATTGGTGAGCAAAATT 57.999 32.000 0.00 0.00 0.00 1.82
1414 2973 6.600882 AGAAATCTGATTGGTGAGCAAAAT 57.399 33.333 0.00 0.00 0.00 1.82
1424 2983 6.717084 GGGGTAAATCCTAGAAATCTGATTGG 59.283 42.308 3.22 1.05 36.25 3.16
1482 3041 1.899534 GCCGGCTATCTCCTCGACT 60.900 63.158 22.15 0.00 0.00 4.18
1484 3043 2.978565 CGCCGGCTATCTCCTCGA 60.979 66.667 26.68 0.00 0.00 4.04
1485 3044 4.044484 CCGCCGGCTATCTCCTCG 62.044 72.222 26.68 4.88 0.00 4.63
1486 3045 3.686045 CCCGCCGGCTATCTCCTC 61.686 72.222 26.68 0.00 0.00 3.71
1599 3210 0.387239 GCGTGGGAATTTGTGAGTGC 60.387 55.000 0.00 0.00 0.00 4.40
1651 3262 1.740585 CGTTTGCATTATGGGACGGAA 59.259 47.619 0.00 0.00 0.00 4.30
1652 3263 1.339247 ACGTTTGCATTATGGGACGGA 60.339 47.619 0.00 0.00 35.06 4.69
1653 3264 1.091537 ACGTTTGCATTATGGGACGG 58.908 50.000 0.00 0.00 35.06 4.79
1654 3265 2.911819 AACGTTTGCATTATGGGACG 57.088 45.000 0.00 0.00 36.65 4.79
1677 3288 9.876245 TAAGACGTTTCTGCAAGCTATGGCTTA 62.876 40.741 16.64 0.75 43.67 3.09
1679 3290 7.814860 TAAGACGTTTCTGCAAGCTATGGCT 62.815 44.000 0.00 0.00 40.76 4.75
1680 3291 0.804989 ACGTTTCTGCAAGCTATGGC 59.195 50.000 0.00 0.00 39.06 4.40
1681 3292 2.350522 AGACGTTTCTGCAAGCTATGG 58.649 47.619 0.00 0.00 0.00 2.74
1682 3293 5.725110 ATAAGACGTTTCTGCAAGCTATG 57.275 39.130 0.00 0.00 29.98 2.23
1683 3294 7.495934 ACAATATAAGACGTTTCTGCAAGCTAT 59.504 33.333 0.00 0.00 29.98 2.97
1684 3295 6.816640 ACAATATAAGACGTTTCTGCAAGCTA 59.183 34.615 0.00 0.00 29.98 3.32
1685 3296 5.643777 ACAATATAAGACGTTTCTGCAAGCT 59.356 36.000 0.00 0.00 29.98 3.74
1686 3297 5.734498 CACAATATAAGACGTTTCTGCAAGC 59.266 40.000 0.00 0.00 29.98 4.01
1687 3298 7.060600 TCACAATATAAGACGTTTCTGCAAG 57.939 36.000 0.00 0.00 29.98 4.01
1688 3299 6.871492 TCTCACAATATAAGACGTTTCTGCAA 59.129 34.615 0.00 0.00 29.98 4.08
1689 3300 6.310467 GTCTCACAATATAAGACGTTTCTGCA 59.690 38.462 0.00 0.00 31.01 4.41
1690 3301 6.697152 GTCTCACAATATAAGACGTTTCTGC 58.303 40.000 0.00 0.00 31.01 4.26
1698 3309 4.583489 TCCCTCCGTCTCACAATATAAGAC 59.417 45.833 0.00 0.00 36.82 3.01
1699 3310 4.800023 TCCCTCCGTCTCACAATATAAGA 58.200 43.478 0.00 0.00 0.00 2.10
1700 3311 4.585162 ACTCCCTCCGTCTCACAATATAAG 59.415 45.833 0.00 0.00 0.00 1.73
1701 3312 4.543689 ACTCCCTCCGTCTCACAATATAA 58.456 43.478 0.00 0.00 0.00 0.98
1702 3313 4.180377 ACTCCCTCCGTCTCACAATATA 57.820 45.455 0.00 0.00 0.00 0.86
1703 3314 3.033659 ACTCCCTCCGTCTCACAATAT 57.966 47.619 0.00 0.00 0.00 1.28
1704 3315 2.526888 ACTCCCTCCGTCTCACAATA 57.473 50.000 0.00 0.00 0.00 1.90
1705 3316 2.100989 GTACTCCCTCCGTCTCACAAT 58.899 52.381 0.00 0.00 0.00 2.71
1706 3317 1.075050 AGTACTCCCTCCGTCTCACAA 59.925 52.381 0.00 0.00 0.00 3.33
1707 3318 0.697079 AGTACTCCCTCCGTCTCACA 59.303 55.000 0.00 0.00 0.00 3.58
1708 3319 1.381522 GAGTACTCCCTCCGTCTCAC 58.618 60.000 12.13 0.00 0.00 3.51
1709 3320 0.255318 GGAGTACTCCCTCCGTCTCA 59.745 60.000 28.87 0.00 43.94 3.27
1710 3321 3.099002 GGAGTACTCCCTCCGTCTC 57.901 63.158 28.87 2.53 43.94 3.36
1720 3331 0.676151 ACGACGACTGGGGAGTACTC 60.676 60.000 14.87 14.87 0.00 2.59
1721 3332 0.676151 GACGACGACTGGGGAGTACT 60.676 60.000 0.00 0.00 0.00 2.73
1722 3333 0.957395 TGACGACGACTGGGGAGTAC 60.957 60.000 0.00 0.00 0.00 2.73
1723 3334 0.034767 ATGACGACGACTGGGGAGTA 60.035 55.000 0.00 0.00 0.00 2.59
1724 3335 0.898789 AATGACGACGACTGGGGAGT 60.899 55.000 0.00 0.00 0.00 3.85
1725 3336 0.246635 AAATGACGACGACTGGGGAG 59.753 55.000 0.00 0.00 0.00 4.30
1726 3337 0.682852 AAAATGACGACGACTGGGGA 59.317 50.000 0.00 0.00 0.00 4.81
1727 3338 0.796312 CAAAATGACGACGACTGGGG 59.204 55.000 0.00 0.00 0.00 4.96
1728 3339 1.726791 CTCAAAATGACGACGACTGGG 59.273 52.381 0.00 0.00 0.00 4.45
1729 3340 2.408704 GTCTCAAAATGACGACGACTGG 59.591 50.000 0.00 0.00 0.00 4.00
1730 3341 3.120286 CAGTCTCAAAATGACGACGACTG 59.880 47.826 0.00 10.92 40.32 3.51
1731 3342 3.243434 ACAGTCTCAAAATGACGACGACT 60.243 43.478 0.00 0.00 39.24 4.18
1732 3343 3.050619 ACAGTCTCAAAATGACGACGAC 58.949 45.455 0.00 0.00 39.24 4.34
1733 3344 3.004419 AGACAGTCTCAAAATGACGACGA 59.996 43.478 0.00 0.00 39.24 4.20
1734 3345 3.309388 AGACAGTCTCAAAATGACGACG 58.691 45.455 0.00 0.00 39.24 5.12
1735 3346 4.551388 AGAGACAGTCTCAAAATGACGAC 58.449 43.478 28.76 1.72 45.73 4.34
1736 3347 4.855715 AGAGACAGTCTCAAAATGACGA 57.144 40.909 28.76 0.00 45.73 4.20
1747 3358 5.653769 AGTACTACTACGAGAGAGACAGTCT 59.346 44.000 1.46 1.46 38.71 3.24
1748 3359 5.894807 AGTACTACTACGAGAGAGACAGTC 58.105 45.833 0.00 0.00 0.00 3.51
1749 3360 5.653769 AGAGTACTACTACGAGAGAGACAGT 59.346 44.000 0.00 0.00 0.00 3.55
1750 3361 6.140303 AGAGTACTACTACGAGAGAGACAG 57.860 45.833 0.00 0.00 0.00 3.51
1751 3362 5.067674 GGAGAGTACTACTACGAGAGAGACA 59.932 48.000 0.00 0.00 0.00 3.41
1752 3363 5.067674 TGGAGAGTACTACTACGAGAGAGAC 59.932 48.000 0.00 0.00 0.00 3.36
1753 3364 5.199723 TGGAGAGTACTACTACGAGAGAGA 58.800 45.833 0.00 0.00 0.00 3.10
1754 3365 5.518848 TGGAGAGTACTACTACGAGAGAG 57.481 47.826 0.00 0.00 0.00 3.20
1755 3366 5.597594 TCATGGAGAGTACTACTACGAGAGA 59.402 44.000 0.00 0.00 0.00 3.10
1756 3367 5.845103 TCATGGAGAGTACTACTACGAGAG 58.155 45.833 0.00 0.00 0.00 3.20
1757 3368 5.866159 TCATGGAGAGTACTACTACGAGA 57.134 43.478 0.00 0.00 0.00 4.04
1758 3369 6.224584 TCATCATGGAGAGTACTACTACGAG 58.775 44.000 0.00 0.00 0.00 4.18
1759 3370 6.170846 TCATCATGGAGAGTACTACTACGA 57.829 41.667 0.00 0.00 0.00 3.43
1760 3371 5.992829 ACTCATCATGGAGAGTACTACTACG 59.007 44.000 16.17 0.00 42.92 3.51
1761 3372 6.993308 TGACTCATCATGGAGAGTACTACTAC 59.007 42.308 17.25 0.00 44.61 2.73
1762 3373 6.993308 GTGACTCATCATGGAGAGTACTACTA 59.007 42.308 17.25 0.00 44.61 1.82
1763 3374 5.825679 GTGACTCATCATGGAGAGTACTACT 59.174 44.000 17.25 0.00 44.61 2.57
1764 3375 5.009210 GGTGACTCATCATGGAGAGTACTAC 59.991 48.000 17.25 15.58 44.61 2.73
1765 3376 5.133941 GGTGACTCATCATGGAGAGTACTA 58.866 45.833 17.25 7.70 44.61 1.82
1766 3377 3.957497 GGTGACTCATCATGGAGAGTACT 59.043 47.826 17.25 0.00 44.61 2.73
1767 3378 3.701542 TGGTGACTCATCATGGAGAGTAC 59.298 47.826 17.25 14.87 44.61 2.73
1768 3379 3.981212 TGGTGACTCATCATGGAGAGTA 58.019 45.455 17.25 3.68 44.61 2.59
1770 3381 3.794717 CTTGGTGACTCATCATGGAGAG 58.205 50.000 12.06 12.06 37.14 3.20
1771 3382 2.093288 GCTTGGTGACTCATCATGGAGA 60.093 50.000 6.04 0.00 37.14 3.71
1772 3383 2.286872 GCTTGGTGACTCATCATGGAG 58.713 52.381 7.18 0.00 37.14 3.86
1773 3384 1.629861 TGCTTGGTGACTCATCATGGA 59.370 47.619 7.18 2.03 37.14 3.41
1774 3385 1.741706 GTGCTTGGTGACTCATCATGG 59.258 52.381 7.18 0.00 37.14 3.66
1775 3386 2.708051 AGTGCTTGGTGACTCATCATG 58.292 47.619 0.00 0.00 37.14 3.07
1776 3387 3.771479 TCTAGTGCTTGGTGACTCATCAT 59.229 43.478 0.00 0.00 37.14 2.45
1777 3388 3.165071 TCTAGTGCTTGGTGACTCATCA 58.835 45.455 0.00 0.00 0.00 3.07
1778 3389 3.779759 CTCTAGTGCTTGGTGACTCATC 58.220 50.000 0.00 0.00 0.00 2.92
1779 3390 2.093764 GCTCTAGTGCTTGGTGACTCAT 60.094 50.000 9.52 0.00 0.00 2.90
1780 3391 1.273606 GCTCTAGTGCTTGGTGACTCA 59.726 52.381 9.52 0.00 0.00 3.41
1781 3392 1.273606 TGCTCTAGTGCTTGGTGACTC 59.726 52.381 17.08 0.00 0.00 3.36
1782 3393 1.342074 TGCTCTAGTGCTTGGTGACT 58.658 50.000 17.08 0.00 0.00 3.41
1783 3394 1.801178 GTTGCTCTAGTGCTTGGTGAC 59.199 52.381 17.08 4.05 0.00 3.67
1784 3395 1.694150 AGTTGCTCTAGTGCTTGGTGA 59.306 47.619 17.08 0.00 0.00 4.02
1785 3396 2.072298 GAGTTGCTCTAGTGCTTGGTG 58.928 52.381 17.08 0.00 0.00 4.17
1786 3397 1.002544 GGAGTTGCTCTAGTGCTTGGT 59.997 52.381 17.08 0.55 0.00 3.67
1787 3398 1.002430 TGGAGTTGCTCTAGTGCTTGG 59.998 52.381 17.08 0.00 0.00 3.61
1788 3399 2.462456 TGGAGTTGCTCTAGTGCTTG 57.538 50.000 17.08 0.00 0.00 4.01
1789 3400 2.772287 GTTGGAGTTGCTCTAGTGCTT 58.228 47.619 17.08 3.93 0.00 3.91
1790 3401 1.337260 CGTTGGAGTTGCTCTAGTGCT 60.337 52.381 17.08 0.00 0.00 4.40
1791 3402 1.071605 CGTTGGAGTTGCTCTAGTGC 58.928 55.000 9.86 9.86 0.00 4.40
1792 3403 1.071605 GCGTTGGAGTTGCTCTAGTG 58.928 55.000 0.00 0.00 0.00 2.74
1793 3404 0.388649 CGCGTTGGAGTTGCTCTAGT 60.389 55.000 0.00 0.00 0.00 2.57
1794 3405 1.687494 GCGCGTTGGAGTTGCTCTAG 61.687 60.000 8.43 0.00 0.00 2.43
1795 3406 1.736645 GCGCGTTGGAGTTGCTCTA 60.737 57.895 8.43 0.00 0.00 2.43
1814 3425 3.031013 TGCTCTCGGATGAAATAGGTCA 58.969 45.455 0.00 0.00 0.00 4.02
1825 3436 3.565764 TCCAAATGAATGCTCTCGGAT 57.434 42.857 0.00 0.00 0.00 4.18
1830 3441 1.952296 GGCGATCCAAATGAATGCTCT 59.048 47.619 0.00 0.00 0.00 4.09
1832 3443 0.664761 CGGCGATCCAAATGAATGCT 59.335 50.000 0.00 0.00 0.00 3.79
1837 3448 0.180171 ATCCACGGCGATCCAAATGA 59.820 50.000 16.62 0.00 0.00 2.57
1845 3456 2.798499 CGACTTTTCTATCCACGGCGAT 60.798 50.000 16.62 0.00 0.00 4.58
1852 3463 1.281419 TGGGCCGACTTTTCTATCCA 58.719 50.000 0.00 0.00 0.00 3.41
1900 3511 1.033746 TCGATAGGCGGACGGAAAGT 61.034 55.000 0.00 0.00 41.33 2.66
1905 3516 1.595993 ATGGATCGATAGGCGGACGG 61.596 60.000 0.00 0.00 41.33 4.79
1915 3526 1.704641 TGAGTCGGGAATGGATCGAT 58.295 50.000 0.00 0.00 35.35 3.59
1916 3527 1.480789 TTGAGTCGGGAATGGATCGA 58.519 50.000 0.00 0.00 0.00 3.59
1920 3531 3.761897 ACAAAATTGAGTCGGGAATGGA 58.238 40.909 0.00 0.00 0.00 3.41
1932 3543 5.009110 TGACGCAAATGAGGTACAAAATTGA 59.991 36.000 0.00 0.00 0.00 2.57
1936 3547 4.602995 GTTGACGCAAATGAGGTACAAAA 58.397 39.130 0.00 0.00 0.00 2.44
1993 3608 3.732849 GGTGGGCCAGAAGGAGGG 61.733 72.222 6.40 0.00 36.89 4.30
2022 3637 0.451783 GATGAAAATGCCGGTCGCTT 59.548 50.000 1.90 0.00 38.78 4.68
2024 3639 1.064134 GGATGAAAATGCCGGTCGC 59.936 57.895 1.90 0.00 38.31 5.19
2026 3641 3.525268 AATTGGATGAAAATGCCGGTC 57.475 42.857 1.90 0.00 0.00 4.79
2030 3645 4.219264 TGGGAAATTGGATGAAAATGCC 57.781 40.909 0.00 0.00 0.00 4.40
2031 3646 6.380995 GTTTTGGGAAATTGGATGAAAATGC 58.619 36.000 0.00 0.00 0.00 3.56
2034 3649 6.259346 AGGTTTTGGGAAATTGGATGAAAA 57.741 33.333 0.00 0.00 0.00 2.29
2040 3655 2.615391 GGGAGGTTTTGGGAAATTGGA 58.385 47.619 0.00 0.00 0.00 3.53
2041 3656 1.275010 CGGGAGGTTTTGGGAAATTGG 59.725 52.381 0.00 0.00 0.00 3.16
2043 3658 0.973632 GCGGGAGGTTTTGGGAAATT 59.026 50.000 0.00 0.00 0.00 1.82
2051 3666 4.717313 GAGCGGGCGGGAGGTTTT 62.717 66.667 0.00 0.00 0.00 2.43
2083 3705 1.153086 AGGTCTTCATCCATGGCGC 60.153 57.895 6.96 0.00 0.00 6.53
2093 3715 1.596934 GGTGGCATCGAGGTCTTCA 59.403 57.895 2.39 0.00 0.00 3.02
2096 3718 4.148825 GCGGTGGCATCGAGGTCT 62.149 66.667 26.58 0.00 39.62 3.85
2210 3838 7.657354 AGCTTCTTCTTCTTCTTCTTCTTCTTC 59.343 37.037 0.00 0.00 0.00 2.87
2211 3839 7.442062 CAGCTTCTTCTTCTTCTTCTTCTTCTT 59.558 37.037 0.00 0.00 0.00 2.52
2212 3840 6.930722 CAGCTTCTTCTTCTTCTTCTTCTTCT 59.069 38.462 0.00 0.00 0.00 2.85
2213 3841 6.928492 TCAGCTTCTTCTTCTTCTTCTTCTTC 59.072 38.462 0.00 0.00 0.00 2.87
2214 3842 6.705825 GTCAGCTTCTTCTTCTTCTTCTTCTT 59.294 38.462 0.00 0.00 0.00 2.52
2215 3843 6.183360 TGTCAGCTTCTTCTTCTTCTTCTTCT 60.183 38.462 0.00 0.00 0.00 2.85
2216 3844 5.988561 TGTCAGCTTCTTCTTCTTCTTCTTC 59.011 40.000 0.00 0.00 0.00 2.87
2217 3845 5.923204 TGTCAGCTTCTTCTTCTTCTTCTT 58.077 37.500 0.00 0.00 0.00 2.52
2218 3846 5.543507 TGTCAGCTTCTTCTTCTTCTTCT 57.456 39.130 0.00 0.00 0.00 2.85
2219 3847 6.400940 CGAATGTCAGCTTCTTCTTCTTCTTC 60.401 42.308 0.00 0.00 0.00 2.87
2220 3848 5.407995 CGAATGTCAGCTTCTTCTTCTTCTT 59.592 40.000 0.00 0.00 0.00 2.52
2221 3849 4.928615 CGAATGTCAGCTTCTTCTTCTTCT 59.071 41.667 0.00 0.00 0.00 2.85
2222 3850 4.435386 GCGAATGTCAGCTTCTTCTTCTTC 60.435 45.833 0.00 0.00 0.00 2.87
2223 3851 3.434984 GCGAATGTCAGCTTCTTCTTCTT 59.565 43.478 0.00 0.00 0.00 2.52
2224 3852 2.999355 GCGAATGTCAGCTTCTTCTTCT 59.001 45.455 0.00 0.00 0.00 2.85
2265 3893 1.650528 CTCCTGTCCTTCCTCTTGGT 58.349 55.000 0.00 0.00 34.23 3.67
2273 3901 2.435059 GCGTGCCTCCTGTCCTTC 60.435 66.667 0.00 0.00 0.00 3.46
2293 3921 2.342279 CTTCGTCCCTTGCGTCCA 59.658 61.111 0.00 0.00 0.00 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.