Multiple sequence alignment - TraesCS7B01G293500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G293500 chr7B 100.000 4177 0 0 1 4177 530382853 530378677 0 7714
1 TraesCS7B01G293500 chr7A 91.115 4232 248 70 1 4177 567586750 567582592 0 5614
2 TraesCS7B01G293500 chr7D 94.622 3570 130 31 623 4177 501097975 501094453 0 5472
3 TraesCS7B01G293500 chr7D 88.245 638 46 14 1 618 501098725 501098097 0 736
4 TraesCS7B01G293500 chr2B 97.412 657 16 1 3314 3970 38033567 38032912 0 1118


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G293500 chr7B 530378677 530382853 4176 True 7714 7714 100.0000 1 4177 1 chr7B.!!$R1 4176
1 TraesCS7B01G293500 chr7A 567582592 567586750 4158 True 5614 5614 91.1150 1 4177 1 chr7A.!!$R1 4176
2 TraesCS7B01G293500 chr7D 501094453 501098725 4272 True 3104 5472 91.4335 1 4177 2 chr7D.!!$R1 4176
3 TraesCS7B01G293500 chr2B 38032912 38033567 655 True 1118 1118 97.4120 3314 3970 1 chr2B.!!$R1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
228 250 0.387565 GATCCCGGAGAGACTTCTGC 59.612 60.000 0.73 0.0 38.32 4.26 F
380 403 0.681175 AGTTGCAGTGGAAAATGGGC 59.319 50.000 0.00 0.0 0.00 5.36 F
766 922 0.750249 TGTGTTGCTCGAGAAGTGGA 59.250 50.000 18.75 0.0 0.00 4.02 F
767 923 1.344438 TGTGTTGCTCGAGAAGTGGAT 59.656 47.619 18.75 0.0 0.00 3.41 F
1949 2107 1.512926 ACTGCGATTGACAGTGGTTC 58.487 50.000 8.65 0.0 46.38 3.62 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1050 1206 3.901290 GCGTAGTCTCATCTCGTATTTCG 59.099 47.826 0.00 0.0 41.41 3.46 R
1942 2100 4.887655 CCTACCAAAAGTTCAAGAACCACT 59.112 41.667 9.20 0.0 42.06 4.00 R
2658 2818 0.731417 CAGAGCTGAAAGGAATGCCG 59.269 55.000 0.00 0.0 39.96 5.69 R
2835 2995 4.448060 GCAGTATAAATAACCACGAGGAGC 59.552 45.833 5.68 0.0 38.69 4.70 R
3324 3487 1.134907 CAATTCTTCCATGTGGCAGGC 60.135 52.381 0.00 0.0 34.44 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.670854 GACAGCGAGAGGTTTGGACC 60.671 60.000 0.00 0.00 46.92 4.46
95 97 1.859080 CTCGCTGTATAAAACGAGGCC 59.141 52.381 7.69 0.00 46.20 5.19
199 221 1.373497 CTGGTCGCGTCTGCTCTTT 60.373 57.895 5.77 0.00 39.65 2.52
226 248 0.466555 CGGATCCCGGAGAGACTTCT 60.467 60.000 0.73 0.00 44.15 2.85
228 250 0.387565 GATCCCGGAGAGACTTCTGC 59.612 60.000 0.73 0.00 38.32 4.26
231 253 1.515020 CCGGAGAGACTTCTGCTGG 59.485 63.158 0.00 0.00 39.43 4.85
380 403 0.681175 AGTTGCAGTGGAAAATGGGC 59.319 50.000 0.00 0.00 0.00 5.36
420 443 4.220693 TGCTGGATGTATGTGCTAGTTT 57.779 40.909 0.00 0.00 0.00 2.66
422 445 3.941483 GCTGGATGTATGTGCTAGTTTGT 59.059 43.478 0.00 0.00 0.00 2.83
433 456 2.038952 TGCTAGTTTGTCATGGACTGCT 59.961 45.455 0.00 0.00 33.15 4.24
544 570 2.101249 ACTTTGTTGTGCTTGGGTCATG 59.899 45.455 0.00 0.00 0.00 3.07
546 572 1.774110 TGTTGTGCTTGGGTCATGTT 58.226 45.000 0.00 0.00 0.00 2.71
589 615 1.005097 TGATTTGCCTCATCTGCAGGT 59.995 47.619 15.13 2.68 40.35 4.00
592 618 3.370840 TTTGCCTCATCTGCAGGTTAT 57.629 42.857 15.13 0.00 40.35 1.89
599 625 3.819337 CTCATCTGCAGGTTATCATTGGG 59.181 47.826 15.13 0.00 0.00 4.12
602 628 4.853468 TCTGCAGGTTATCATTGGGTTA 57.147 40.909 15.13 0.00 0.00 2.85
607 633 5.417580 TGCAGGTTATCATTGGGTTAAACTC 59.582 40.000 0.00 0.00 28.40 3.01
608 634 5.163550 GCAGGTTATCATTGGGTTAAACTCC 60.164 44.000 0.00 0.00 28.40 3.85
621 763 8.570068 TGGGTTAAACTCCATATTGTTACTTC 57.430 34.615 0.00 0.00 0.00 3.01
623 765 9.895138 GGGTTAAACTCCATATTGTTACTTCTA 57.105 33.333 0.00 0.00 0.00 2.10
641 784 4.200447 TCTAGGGAATCCTGGTCCTTAG 57.800 50.000 13.38 13.38 44.61 2.18
646 789 3.977326 GGGAATCCTGGTCCTTAGATTCT 59.023 47.826 19.64 0.00 42.66 2.40
660 803 6.268847 TCCTTAGATTCTTCATCTAGCCCTTC 59.731 42.308 0.00 0.00 44.04 3.46
665 808 2.838202 TCTTCATCTAGCCCTTCGGTTT 59.162 45.455 0.00 0.00 0.00 3.27
666 809 2.691409 TCATCTAGCCCTTCGGTTTG 57.309 50.000 0.00 0.00 0.00 2.93
674 817 2.164338 GCCCTTCGGTTTGGTAATTGA 58.836 47.619 0.00 0.00 0.00 2.57
677 820 4.322424 GCCCTTCGGTTTGGTAATTGATTT 60.322 41.667 0.00 0.00 0.00 2.17
686 837 7.358848 CGGTTTGGTAATTGATTTTTGCTGTAC 60.359 37.037 0.00 0.00 0.00 2.90
695 846 6.247727 TGATTTTTGCTGTACGATGCTTTA 57.752 33.333 0.00 0.00 0.00 1.85
698 849 6.788684 TTTTTGCTGTACGATGCTTTAGTA 57.211 33.333 0.00 0.00 0.00 1.82
705 856 8.520351 TGCTGTACGATGCTTTAGTATGTATAT 58.480 33.333 0.00 0.00 0.00 0.86
706 857 9.999009 GCTGTACGATGCTTTAGTATGTATATA 57.001 33.333 0.00 0.00 0.00 0.86
709 860 9.727627 GTACGATGCTTTAGTATGTATATACCC 57.272 37.037 10.38 0.00 40.03 3.69
710 861 8.591114 ACGATGCTTTAGTATGTATATACCCT 57.409 34.615 10.38 6.29 40.03 4.34
742 898 8.715998 ACTTATGATTTTGAATGCTAGCTATCG 58.284 33.333 17.23 0.68 0.00 2.92
750 906 6.291067 TGAATGCTAGCTATCGAAATTGTG 57.709 37.500 17.23 0.00 0.00 3.33
754 910 4.201812 TGCTAGCTATCGAAATTGTGTTGC 60.202 41.667 17.23 0.00 0.00 4.17
756 912 4.606457 AGCTATCGAAATTGTGTTGCTC 57.394 40.909 0.00 0.00 0.00 4.26
757 913 3.062639 AGCTATCGAAATTGTGTTGCTCG 59.937 43.478 0.00 0.00 0.00 5.03
758 914 3.062099 GCTATCGAAATTGTGTTGCTCGA 59.938 43.478 0.00 0.00 42.17 4.04
761 917 3.127589 TCGAAATTGTGTTGCTCGAGAA 58.872 40.909 18.75 1.15 33.87 2.87
762 918 3.184379 TCGAAATTGTGTTGCTCGAGAAG 59.816 43.478 18.75 0.00 33.87 2.85
763 919 3.059597 CGAAATTGTGTTGCTCGAGAAGT 60.060 43.478 18.75 0.00 0.00 3.01
764 920 3.885484 AATTGTGTTGCTCGAGAAGTG 57.115 42.857 18.75 0.00 0.00 3.16
765 921 1.581934 TTGTGTTGCTCGAGAAGTGG 58.418 50.000 18.75 0.00 0.00 4.00
766 922 0.750249 TGTGTTGCTCGAGAAGTGGA 59.250 50.000 18.75 0.00 0.00 4.02
767 923 1.344438 TGTGTTGCTCGAGAAGTGGAT 59.656 47.619 18.75 0.00 0.00 3.41
768 924 1.996191 GTGTTGCTCGAGAAGTGGATC 59.004 52.381 18.75 0.00 0.00 3.36
769 925 1.618343 TGTTGCTCGAGAAGTGGATCA 59.382 47.619 18.75 0.00 0.00 2.92
770 926 2.037121 TGTTGCTCGAGAAGTGGATCAA 59.963 45.455 18.75 5.14 0.00 2.57
771 927 3.265791 GTTGCTCGAGAAGTGGATCAAT 58.734 45.455 18.75 0.00 0.00 2.57
776 932 6.816136 TGCTCGAGAAGTGGATCAATATTTA 58.184 36.000 18.75 0.00 0.00 1.40
778 934 6.129062 GCTCGAGAAGTGGATCAATATTTACG 60.129 42.308 18.75 0.00 0.00 3.18
810 966 9.649167 AAAGGCATCTTTCATTTATTTGAAGAG 57.351 29.630 0.00 0.00 38.76 2.85
811 967 8.585471 AGGCATCTTTCATTTATTTGAAGAGA 57.415 30.769 0.00 0.00 36.97 3.10
812 968 9.028284 AGGCATCTTTCATTTATTTGAAGAGAA 57.972 29.630 0.00 0.00 36.97 2.87
813 969 9.813446 GGCATCTTTCATTTATTTGAAGAGAAT 57.187 29.630 0.00 0.00 36.97 2.40
880 1036 7.013846 TGTGTCTAAATTTCCTAACAAACTGGG 59.986 37.037 0.00 0.00 0.00 4.45
927 1083 4.705337 AAACACAAAGCGACTGGTTTTA 57.295 36.364 0.00 0.00 42.88 1.52
974 1130 6.129062 CGCTATATCGTTGACTCAAATCCTTC 60.129 42.308 0.00 0.00 0.00 3.46
979 1135 3.437049 CGTTGACTCAAATCCTTCCCTTC 59.563 47.826 0.00 0.00 0.00 3.46
1014 1170 2.228103 GAGAAAAATGGGTGTCGGGAAC 59.772 50.000 0.00 0.00 0.00 3.62
1461 1617 8.012957 TCAATACTTCTCCTTCCTGTTCTATC 57.987 38.462 0.00 0.00 0.00 2.08
1504 1660 5.982516 TGTGATGCAACTTAAATTCACCAAC 59.017 36.000 9.62 0.00 34.11 3.77
1506 1662 6.701400 GTGATGCAACTTAAATTCACCAACTT 59.299 34.615 0.00 0.00 0.00 2.66
1688 1845 3.365364 GCTGATTGACTTGGGTTTCTTCG 60.365 47.826 0.00 0.00 0.00 3.79
1733 1890 5.224821 CTCATCCATGAGCTCCTGATAAA 57.775 43.478 19.36 3.72 46.63 1.40
1801 1959 6.967897 AGCTCCCTCTCTGAAGAAATAATTT 58.032 36.000 0.00 0.00 0.00 1.82
1949 2107 1.512926 ACTGCGATTGACAGTGGTTC 58.487 50.000 8.65 0.00 46.38 3.62
1961 2119 4.157656 TGACAGTGGTTCTTGAACTTTTGG 59.842 41.667 12.44 3.39 0.00 3.28
2451 2609 3.488047 CCAGCTATTCTTGCCATTGTTCG 60.488 47.826 0.00 0.00 0.00 3.95
2658 2818 5.046910 TCGCCAACTTTGATTCAAATCTC 57.953 39.130 12.04 1.05 36.39 2.75
2835 2995 8.824159 AGAGATTTACAATCATAACCATCTCG 57.176 34.615 0.00 0.00 40.17 4.04
2987 3147 9.903682 CCTAAATAATGCTTCTGATTGGTTATG 57.096 33.333 0.00 0.00 0.00 1.90
3080 3243 1.400242 GCAACCAAGCGTGACAAGATC 60.400 52.381 0.00 0.00 0.00 2.75
3178 3341 3.429135 CGTAGGAAAGAGGTAGCCTGAAC 60.429 52.174 0.00 0.00 31.76 3.18
3217 3380 1.734655 AGGAAGGGTGTCACTGATGT 58.265 50.000 2.35 0.00 0.00 3.06
3630 3795 7.460910 TCTGAGAGAAGCTGTAGATCTGATAT 58.539 38.462 5.18 0.00 0.00 1.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 0.659417 GCCAATCAATCAGCGCATCG 60.659 55.000 11.47 0.00 0.00 3.84
79 80 1.578583 CCCGGCCTCGTTTTATACAG 58.421 55.000 0.00 0.00 33.95 2.74
80 81 0.462403 GCCCGGCCTCGTTTTATACA 60.462 55.000 0.00 0.00 33.95 2.29
133 152 1.388531 GACTGTGGAGGGAGGGAGA 59.611 63.158 0.00 0.00 0.00 3.71
138 157 0.322975 CTTGTGGACTGTGGAGGGAG 59.677 60.000 0.00 0.00 0.00 4.30
226 248 0.887387 GCGTTACCTTTCCACCAGCA 60.887 55.000 0.00 0.00 0.00 4.41
228 250 0.958876 GGGCGTTACCTTTCCACCAG 60.959 60.000 0.00 0.00 39.10 4.00
380 403 3.316308 AGCAACTGTCCTAAAAGCAACAG 59.684 43.478 0.00 0.00 43.69 3.16
420 443 4.206375 TCAAAGAAAAGCAGTCCATGACA 58.794 39.130 0.00 0.00 34.60 3.58
422 445 7.394077 TCATAATCAAAGAAAAGCAGTCCATGA 59.606 33.333 0.00 0.00 0.00 3.07
458 481 6.638063 CAGACAAACACAACATTCGATTGAAT 59.362 34.615 13.92 2.01 45.70 2.57
459 482 5.970612 CAGACAAACACAACATTCGATTGAA 59.029 36.000 13.92 0.00 38.76 2.69
460 483 5.065859 ACAGACAAACACAACATTCGATTGA 59.934 36.000 13.92 0.00 0.00 2.57
461 484 5.273170 ACAGACAAACACAACATTCGATTG 58.727 37.500 5.78 5.78 0.00 2.67
509 535 6.399986 GCACAACAAAGTCAACTGAAGTTTTC 60.400 38.462 0.00 0.00 35.83 2.29
513 539 3.758554 AGCACAACAAAGTCAACTGAAGT 59.241 39.130 0.00 0.00 0.00 3.01
544 570 7.703621 CACATGGAGAAATGATATCCAAACAAC 59.296 37.037 0.00 0.00 45.82 3.32
546 572 7.118060 TCACATGGAGAAATGATATCCAAACA 58.882 34.615 0.00 0.00 45.82 2.83
589 615 9.707957 ACAATATGGAGTTTAACCCAATGATAA 57.292 29.630 8.83 0.00 35.85 1.75
592 618 8.962679 GTAACAATATGGAGTTTAACCCAATGA 58.037 33.333 8.83 0.68 35.85 2.57
602 628 8.388656 TCCCTAGAAGTAACAATATGGAGTTT 57.611 34.615 0.00 0.00 0.00 2.66
607 633 7.880195 CAGGATTCCCTAGAAGTAACAATATGG 59.120 40.741 0.00 0.00 42.02 2.74
608 634 7.880195 CCAGGATTCCCTAGAAGTAACAATATG 59.120 40.741 0.00 0.00 42.02 1.78
621 763 4.200447 TCTAAGGACCAGGATTCCCTAG 57.800 50.000 0.00 0.00 42.02 3.02
623 765 3.734344 ATCTAAGGACCAGGATTCCCT 57.266 47.619 0.00 0.00 45.74 4.20
624 766 3.977326 AGAATCTAAGGACCAGGATTCCC 59.023 47.826 20.51 7.21 42.66 3.97
660 803 5.465056 ACAGCAAAAATCAATTACCAAACCG 59.535 36.000 0.00 0.00 0.00 4.44
665 808 6.561737 TCGTACAGCAAAAATCAATTACCA 57.438 33.333 0.00 0.00 0.00 3.25
666 809 6.020678 GCATCGTACAGCAAAAATCAATTACC 60.021 38.462 0.00 0.00 0.00 2.85
674 817 6.254281 ACTAAAGCATCGTACAGCAAAAAT 57.746 33.333 4.98 0.00 0.00 1.82
677 820 5.872617 ACATACTAAAGCATCGTACAGCAAA 59.127 36.000 4.98 0.00 0.00 3.68
705 856 9.762381 ATTCAAAATCATAAGTGGTTTAGGGTA 57.238 29.630 0.00 0.00 37.68 3.69
706 857 8.531146 CATTCAAAATCATAAGTGGTTTAGGGT 58.469 33.333 0.00 0.00 37.68 4.34
708 859 8.253113 AGCATTCAAAATCATAAGTGGTTTAGG 58.747 33.333 0.00 0.00 37.68 2.69
712 863 7.123247 AGCTAGCATTCAAAATCATAAGTGGTT 59.877 33.333 18.83 0.00 0.00 3.67
713 864 6.604795 AGCTAGCATTCAAAATCATAAGTGGT 59.395 34.615 18.83 0.00 0.00 4.16
714 865 7.035840 AGCTAGCATTCAAAATCATAAGTGG 57.964 36.000 18.83 0.00 0.00 4.00
716 867 8.715998 CGATAGCTAGCATTCAAAATCATAAGT 58.284 33.333 18.83 0.00 0.00 2.24
717 868 8.929746 TCGATAGCTAGCATTCAAAATCATAAG 58.070 33.333 18.83 0.00 0.00 1.73
719 870 8.831715 TTCGATAGCTAGCATTCAAAATCATA 57.168 30.769 18.83 0.00 0.00 2.15
721 872 7.552458 TTTCGATAGCTAGCATTCAAAATCA 57.448 32.000 18.83 0.00 0.00 2.57
722 873 8.899776 CAATTTCGATAGCTAGCATTCAAAATC 58.100 33.333 18.83 6.86 0.00 2.17
723 874 8.408601 ACAATTTCGATAGCTAGCATTCAAAAT 58.591 29.630 18.83 12.79 0.00 1.82
726 882 6.316140 ACACAATTTCGATAGCTAGCATTCAA 59.684 34.615 18.83 5.01 0.00 2.69
742 898 4.214437 CACTTCTCGAGCAACACAATTTC 58.786 43.478 7.81 0.00 0.00 2.17
750 906 2.370281 TGATCCACTTCTCGAGCAAC 57.630 50.000 7.81 0.00 0.00 4.17
754 910 6.918569 ACGTAAATATTGATCCACTTCTCGAG 59.081 38.462 5.93 5.93 0.00 4.04
756 912 7.464830 AACGTAAATATTGATCCACTTCTCG 57.535 36.000 0.00 0.00 0.00 4.04
784 940 9.649167 CTCTTCAAATAAATGAAAGATGCCTTT 57.351 29.630 0.00 0.00 44.73 3.11
868 1024 3.485463 TGGTGAGACCCAGTTTGTTAG 57.515 47.619 0.00 0.00 37.50 2.34
880 1036 6.483974 TCTCTCGATACTTCTTATGGTGAGAC 59.516 42.308 0.00 0.00 39.07 3.36
917 1073 9.827411 GACTATTTGATTTGACTAAAACCAGTC 57.173 33.333 0.00 0.00 44.37 3.51
927 1083 6.540189 AGCGCAATAGACTATTTGATTTGACT 59.460 34.615 11.47 0.00 0.00 3.41
979 1135 5.182760 CCATTTTTCTCTTTCACTCTCCTGG 59.817 44.000 0.00 0.00 0.00 4.45
1014 1170 2.158959 GTTCACGTCCGCTGATCCG 61.159 63.158 0.00 0.00 0.00 4.18
1023 1179 2.022129 CGTCTGCTGGTTCACGTCC 61.022 63.158 0.00 0.00 0.00 4.79
1050 1206 3.901290 GCGTAGTCTCATCTCGTATTTCG 59.099 47.826 0.00 0.00 41.41 3.46
1461 1617 7.357532 GCATCACAAAATGTTCGAAAGTAACAG 60.358 37.037 0.00 0.00 40.00 3.16
1642 1798 9.566432 AGCTAAGCAATAAACTTATATGCTCTT 57.434 29.630 14.16 7.30 28.17 2.85
1688 1845 8.999431 TGAGAATTGTCTTGAAAGTAATGTACC 58.001 33.333 4.03 0.00 32.80 3.34
1749 1906 7.232534 GGGTTCCATTTGCCATTTGATAGTATA 59.767 37.037 0.00 0.00 0.00 1.47
1942 2100 4.887655 CCTACCAAAAGTTCAAGAACCACT 59.112 41.667 9.20 0.00 42.06 4.00
1949 2107 7.687941 ATACATCACCTACCAAAAGTTCAAG 57.312 36.000 0.00 0.00 0.00 3.02
1961 2119 7.542477 CGATGTTCCAGATAATACATCACCTAC 59.458 40.741 12.77 0.00 44.37 3.18
2196 2354 6.798427 AGCTCAGTGAATCTATAGGAAACA 57.202 37.500 0.00 0.00 0.00 2.83
2482 2642 4.455533 GTCAATGCTGTGAACTGTGGAATA 59.544 41.667 0.00 0.00 0.00 1.75
2658 2818 0.731417 CAGAGCTGAAAGGAATGCCG 59.269 55.000 0.00 0.00 39.96 5.69
2835 2995 4.448060 GCAGTATAAATAACCACGAGGAGC 59.552 45.833 5.68 0.00 38.69 4.70
2987 3147 5.470437 GGAGTGCTTAGCAAATAGGGAATAC 59.530 44.000 9.05 0.00 41.47 1.89
3080 3243 2.352651 CACGATCATGGTTACAGCCAAG 59.647 50.000 0.00 0.00 42.48 3.61
3178 3341 6.683974 TCCTTTCAACTTTGAACTCTGAAG 57.316 37.500 3.84 0.00 45.99 3.02
3184 3347 4.402474 CACCCTTCCTTTCAACTTTGAACT 59.598 41.667 3.84 0.00 45.99 3.01
3185 3348 4.159693 ACACCCTTCCTTTCAACTTTGAAC 59.840 41.667 3.84 0.00 45.99 3.18
3195 3358 2.930826 TCAGTGACACCCTTCCTTTC 57.069 50.000 0.84 0.00 0.00 2.62
3217 3380 5.666462 TGTAATATGAAACTGCGCTTCCTA 58.334 37.500 9.73 2.07 0.00 2.94
3324 3487 1.134907 CAATTCTTCCATGTGGCAGGC 60.135 52.381 0.00 0.00 34.44 4.85
3565 3730 6.151985 ACAATGGCCACTTTATTTGTATTCGA 59.848 34.615 16.61 0.00 0.00 3.71
3672 3837 4.614475 TCATCTGGAGACTAGTGGAACAT 58.386 43.478 0.00 0.00 44.52 2.71
3702 3867 4.449131 CCAGTACGACTAGGATGTAGACA 58.551 47.826 0.00 0.00 0.00 3.41
3994 4181 1.149148 GGCGTCTGACCTTTCAAGAC 58.851 55.000 1.55 0.00 31.62 3.01
4109 4298 9.358872 GACAAAAGAAAAACACTCTCAGAAAAT 57.641 29.630 0.00 0.00 0.00 1.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.