Multiple sequence alignment - TraesCS7B01G293000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G293000 chr7B 100.000 3491 0 0 2645 6135 529956929 529953439 0.000000e+00 6447.0
1 TraesCS7B01G293000 chr7B 100.000 2271 0 0 1 2271 529959573 529957303 0.000000e+00 4194.0
2 TraesCS7B01G293000 chr7D 95.968 2381 74 10 3274 5647 500972532 500970167 0.000000e+00 3845.0
3 TraesCS7B01G293000 chr7D 89.351 2235 135 45 72 2271 500975772 500973606 0.000000e+00 2713.0
4 TraesCS7B01G293000 chr7D 92.678 478 27 5 5662 6135 500969478 500969005 0.000000e+00 682.0
5 TraesCS7B01G293000 chr7D 88.151 557 22 20 2645 3194 500973048 500972529 1.880000e-174 623.0
6 TraesCS7B01G293000 chr7A 95.924 2380 73 9 3274 5647 567455024 567452663 0.000000e+00 3836.0
7 TraesCS7B01G293000 chr7A 90.129 2087 127 39 224 2271 567457845 567455799 0.000000e+00 2639.0
8 TraesCS7B01G293000 chr7A 93.096 478 27 4 5662 6135 567451925 567451450 0.000000e+00 695.0
9 TraesCS7B01G293000 chr7A 89.009 555 28 16 2645 3194 567455547 567455021 0.000000e+00 656.0
10 TraesCS7B01G293000 chr6D 81.330 391 59 13 3530 3914 138907380 138907762 7.730000e-79 305.0
11 TraesCS7B01G293000 chr6D 81.744 367 38 13 994 1332 138904556 138904921 4.680000e-71 279.0
12 TraesCS7B01G293000 chr6D 86.792 106 14 0 1220 1325 441899548 441899443 1.080000e-22 119.0
13 TraesCS7B01G293000 chr6A 81.074 391 60 13 3530 3914 181567783 181568165 3.590000e-77 300.0
14 TraesCS7B01G293000 chr6A 89.238 223 24 0 1110 1332 181563733 181563955 4.680000e-71 279.0
15 TraesCS7B01G293000 chr6A 97.727 88 2 0 3191 3278 190660350 190660437 1.070000e-32 152.0
16 TraesCS7B01G293000 chr6A 97.727 88 2 0 3191 3278 190738273 190738360 1.070000e-32 152.0
17 TraesCS7B01G293000 chr6A 86.792 106 14 0 1220 1325 591267554 591267449 1.080000e-22 119.0
18 TraesCS7B01G293000 chr6B 80.818 391 61 13 3530 3914 238170529 238170911 1.670000e-75 294.0
19 TraesCS7B01G293000 chr6B 81.694 366 40 10 994 1332 238167826 238168191 4.680000e-71 279.0
20 TraesCS7B01G293000 chr6B 91.176 102 8 1 3180 3280 551951858 551951959 2.980000e-28 137.0
21 TraesCS7B01G293000 chr6B 86.792 106 14 0 1220 1325 667899841 667899736 1.080000e-22 119.0
22 TraesCS7B01G293000 chr5D 95.789 95 3 1 3185 3279 446918166 446918259 1.070000e-32 152.0
23 TraesCS7B01G293000 chr4A 89.344 122 8 4 3157 3278 684976224 684976108 1.380000e-31 148.0
24 TraesCS7B01G293000 chr5A 94.681 94 5 0 3182 3275 612022699 612022792 4.960000e-31 147.0
25 TraesCS7B01G293000 chr1A 94.681 94 5 0 3182 3275 339332810 339332903 4.960000e-31 147.0
26 TraesCS7B01G293000 chr1B 92.857 98 6 1 3179 3275 151363754 151363657 2.310000e-29 141.0
27 TraesCS7B01G293000 chr2A 89.815 108 8 3 3190 3295 617636033 617636139 1.070000e-27 135.0
28 TraesCS7B01G293000 chr4D 100.000 28 0 0 3248 3275 404618385 404618412 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G293000 chr7B 529953439 529959573 6134 True 5320.50 6447 100.0000 1 6135 2 chr7B.!!$R1 6134
1 TraesCS7B01G293000 chr7D 500969005 500975772 6767 True 1965.75 3845 91.5370 72 6135 4 chr7D.!!$R1 6063
2 TraesCS7B01G293000 chr7A 567451450 567457845 6395 True 1956.50 3836 92.0395 224 6135 4 chr7A.!!$R1 5911
3 TraesCS7B01G293000 chr6D 138904556 138907762 3206 False 292.00 305 81.5370 994 3914 2 chr6D.!!$F1 2920
4 TraesCS7B01G293000 chr6A 181563733 181568165 4432 False 289.50 300 85.1560 1110 3914 2 chr6A.!!$F3 2804
5 TraesCS7B01G293000 chr6B 238167826 238170911 3085 False 286.50 294 81.2560 994 3914 2 chr6B.!!$F2 2920

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
62 63 0.035534 AATTTGCCCATTTTCCGCCC 60.036 50.0 0.00 0.0 0.00 6.13 F
68 69 0.171679 CCCATTTTCCGCCCGTAAAC 59.828 55.0 0.00 0.0 0.00 2.01 F
69 70 0.179184 CCATTTTCCGCCCGTAAACG 60.179 55.0 0.00 0.0 39.44 3.60 F
1459 1769 0.178950 TTGCTTGTTGGGGGTATGCA 60.179 50.0 0.00 0.0 0.00 3.96 F
1666 2212 0.325296 TGGTCCGAAGACTAGGCCAT 60.325 55.0 5.01 0.0 43.05 4.40 F
2818 4826 0.532862 ACGCTTGAGTTGTCCAGTGG 60.533 55.0 1.40 1.4 31.60 4.00 F
2968 5841 0.737219 CTTGTAGCTCCAATGCCAGC 59.263 55.0 0.00 0.0 35.73 4.85 F
4173 7057 0.824109 CTGAACCGATGACCCTAGCA 59.176 55.0 0.00 0.0 0.00 3.49 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1371 1435 0.108138 AGCAACCTAACGCTAGCAGG 60.108 55.0 16.45 16.27 36.50 4.85 R
1426 1736 0.385390 AAGCAAAACCCAAGCAGACG 59.615 50.0 0.00 0.00 0.00 4.18 R
1632 2178 0.462047 GACCACCCAGCCGATAACAG 60.462 60.0 0.00 0.00 0.00 3.16 R
2800 4808 0.249868 TCCACTGGACAACTCAAGCG 60.250 55.0 0.00 0.00 0.00 4.68 R
2952 5075 0.737219 CAAGCTGGCATTGGAGCTAC 59.263 55.0 0.00 0.00 44.97 3.58 R
4221 7105 0.179018 GGTGAACTGGCTGTTGGACT 60.179 55.0 14.80 0.00 39.30 3.85 R
4666 7551 2.023404 TGGGGACTTCTCTATGGCTGTA 60.023 50.0 0.00 0.00 0.00 2.74 R
5332 8217 0.535335 TCCGTGTGGGAGTAGCATTC 59.465 55.0 0.00 0.00 40.94 2.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.512485 CACATGCTTGTTTTGCTCCA 57.488 45.000 1.83 0.00 32.34 3.86
20 21 2.823984 CACATGCTTGTTTTGCTCCAA 58.176 42.857 1.83 0.00 32.34 3.53
21 22 3.395639 CACATGCTTGTTTTGCTCCAAT 58.604 40.909 1.83 0.00 32.34 3.16
22 23 3.810941 CACATGCTTGTTTTGCTCCAATT 59.189 39.130 1.83 0.00 32.34 2.32
23 24 3.810941 ACATGCTTGTTTTGCTCCAATTG 59.189 39.130 0.00 0.00 29.55 2.32
24 25 2.836262 TGCTTGTTTTGCTCCAATTGG 58.164 42.857 19.08 19.08 0.00 3.16
25 26 2.170187 TGCTTGTTTTGCTCCAATTGGT 59.830 40.909 23.76 0.00 36.34 3.67
26 27 3.386078 TGCTTGTTTTGCTCCAATTGGTA 59.614 39.130 23.76 10.03 36.34 3.25
27 28 3.740832 GCTTGTTTTGCTCCAATTGGTAC 59.259 43.478 23.76 16.79 36.34 3.34
28 29 4.739137 GCTTGTTTTGCTCCAATTGGTACA 60.739 41.667 23.76 19.05 36.34 2.90
29 30 4.314740 TGTTTTGCTCCAATTGGTACAC 57.685 40.909 23.76 12.10 39.29 2.90
30 31 3.243234 TGTTTTGCTCCAATTGGTACACG 60.243 43.478 23.76 9.62 39.29 4.49
31 32 1.529226 TTGCTCCAATTGGTACACGG 58.471 50.000 23.76 9.46 39.29 4.94
32 33 0.322098 TGCTCCAATTGGTACACGGG 60.322 55.000 23.76 7.93 39.29 5.28
33 34 0.322187 GCTCCAATTGGTACACGGGT 60.322 55.000 23.76 0.00 39.29 5.28
34 35 1.884928 GCTCCAATTGGTACACGGGTT 60.885 52.381 23.76 0.00 39.29 4.11
35 36 2.081462 CTCCAATTGGTACACGGGTTC 58.919 52.381 23.76 0.00 39.29 3.62
36 37 1.420514 TCCAATTGGTACACGGGTTCA 59.579 47.619 23.76 0.00 39.29 3.18
37 38 2.040545 TCCAATTGGTACACGGGTTCAT 59.959 45.455 23.76 0.00 39.29 2.57
38 39 3.263681 TCCAATTGGTACACGGGTTCATA 59.736 43.478 23.76 0.00 39.29 2.15
39 40 3.625764 CCAATTGGTACACGGGTTCATAG 59.374 47.826 16.90 0.00 39.29 2.23
40 41 2.389962 TTGGTACACGGGTTCATAGC 57.610 50.000 0.00 0.00 39.29 2.97
41 42 1.563924 TGGTACACGGGTTCATAGCT 58.436 50.000 0.00 0.00 0.00 3.32
42 43 2.737544 TGGTACACGGGTTCATAGCTA 58.262 47.619 0.00 0.00 0.00 3.32
43 44 3.098377 TGGTACACGGGTTCATAGCTAA 58.902 45.455 0.00 0.00 0.00 3.09
44 45 3.514706 TGGTACACGGGTTCATAGCTAAA 59.485 43.478 0.00 0.00 0.00 1.85
45 46 4.162698 TGGTACACGGGTTCATAGCTAAAT 59.837 41.667 0.00 0.00 0.00 1.40
46 47 5.121105 GGTACACGGGTTCATAGCTAAATT 58.879 41.667 0.00 0.00 0.00 1.82
47 48 5.587443 GGTACACGGGTTCATAGCTAAATTT 59.413 40.000 0.00 0.00 0.00 1.82
48 49 5.560966 ACACGGGTTCATAGCTAAATTTG 57.439 39.130 0.00 0.00 0.00 2.32
49 50 4.142469 ACACGGGTTCATAGCTAAATTTGC 60.142 41.667 0.00 2.83 0.00 3.68
50 51 3.380320 ACGGGTTCATAGCTAAATTTGCC 59.620 43.478 0.00 0.00 0.00 4.52
51 52 3.243401 CGGGTTCATAGCTAAATTTGCCC 60.243 47.826 0.00 4.59 0.00 5.36
52 53 3.704061 GGGTTCATAGCTAAATTTGCCCA 59.296 43.478 0.00 0.00 32.98 5.36
53 54 4.344968 GGGTTCATAGCTAAATTTGCCCAT 59.655 41.667 0.00 0.00 32.98 4.00
54 55 5.163311 GGGTTCATAGCTAAATTTGCCCATT 60.163 40.000 0.00 0.00 32.98 3.16
55 56 6.348498 GGTTCATAGCTAAATTTGCCCATTT 58.652 36.000 0.00 0.00 0.00 2.32
56 57 6.823182 GGTTCATAGCTAAATTTGCCCATTTT 59.177 34.615 0.00 0.00 0.00 1.82
57 58 7.011389 GGTTCATAGCTAAATTTGCCCATTTTC 59.989 37.037 0.00 0.00 0.00 2.29
58 59 6.581712 TCATAGCTAAATTTGCCCATTTTCC 58.418 36.000 0.00 0.00 0.00 3.13
59 60 3.860641 AGCTAAATTTGCCCATTTTCCG 58.139 40.909 0.00 0.00 0.00 4.30
60 61 2.351418 GCTAAATTTGCCCATTTTCCGC 59.649 45.455 0.00 0.00 0.00 5.54
61 62 1.819928 AAATTTGCCCATTTTCCGCC 58.180 45.000 0.00 0.00 0.00 6.13
62 63 0.035534 AATTTGCCCATTTTCCGCCC 60.036 50.000 0.00 0.00 0.00 6.13
63 64 2.237534 ATTTGCCCATTTTCCGCCCG 62.238 55.000 0.00 0.00 0.00 6.13
64 65 4.669809 TGCCCATTTTCCGCCCGT 62.670 61.111 0.00 0.00 0.00 5.28
65 66 2.438795 GCCCATTTTCCGCCCGTA 60.439 61.111 0.00 0.00 0.00 4.02
66 67 2.047443 GCCCATTTTCCGCCCGTAA 61.047 57.895 0.00 0.00 0.00 3.18
67 68 1.596895 GCCCATTTTCCGCCCGTAAA 61.597 55.000 0.00 0.00 0.00 2.01
68 69 0.171679 CCCATTTTCCGCCCGTAAAC 59.828 55.000 0.00 0.00 0.00 2.01
69 70 0.179184 CCATTTTCCGCCCGTAAACG 60.179 55.000 0.00 0.00 39.44 3.60
70 71 0.795358 CATTTTCCGCCCGTAAACGC 60.795 55.000 0.00 0.00 38.18 4.84
98 99 7.660030 TGATATGAATAGTGACCACTTCTGA 57.340 36.000 8.06 0.00 42.54 3.27
112 113 5.888724 ACCACTTCTGATCTAGATCGAGAAA 59.111 40.000 28.28 19.34 40.63 2.52
113 114 6.183360 ACCACTTCTGATCTAGATCGAGAAAC 60.183 42.308 28.28 7.80 40.63 2.78
114 115 6.183360 CCACTTCTGATCTAGATCGAGAAACA 60.183 42.308 28.28 17.65 40.63 2.83
117 118 9.295825 ACTTCTGATCTAGATCGAGAAACATAT 57.704 33.333 28.28 17.88 40.63 1.78
269 273 6.249260 GCTTTACACAATGCATTAGAAACTCG 59.751 38.462 12.53 0.00 35.46 4.18
292 296 5.504665 CGATTACAATGATGAGACAAAGGCC 60.505 44.000 0.00 0.00 0.00 5.19
293 297 2.086869 ACAATGATGAGACAAAGGCCG 58.913 47.619 0.00 0.00 0.00 6.13
307 316 1.073177 AGGCCGTTTAAACATCGACG 58.927 50.000 18.07 3.76 35.44 5.12
427 436 0.948623 TGGCTTCACATCGACGTTGG 60.949 55.000 10.46 0.00 0.00 3.77
443 453 4.164822 CGTTGGAAAAGACGTCTACCTA 57.835 45.455 20.39 15.79 34.75 3.08
471 483 1.257750 TGCTGCCGCTCTCTAGGAAA 61.258 55.000 0.70 0.00 36.97 3.13
573 598 3.047718 GATGCGTCGACTCACCGGA 62.048 63.158 10.96 0.00 0.00 5.14
608 633 3.129287 AGATCGCATGGTGACCAAATTTC 59.871 43.478 9.06 2.61 36.95 2.17
617 642 3.745458 GGTGACCAAATTTCCGTTACGTA 59.255 43.478 3.52 0.00 0.00 3.57
630 655 4.522789 TCCGTTACGTACCCTAAACTCTTT 59.477 41.667 3.52 0.00 0.00 2.52
640 665 7.118680 CGTACCCTAAACTCTTTCAAATTAGCA 59.881 37.037 0.00 0.00 0.00 3.49
658 683 2.957680 AGCAACAAACACACATGATCCA 59.042 40.909 0.00 0.00 0.00 3.41
659 684 3.052036 GCAACAAACACACATGATCCAC 58.948 45.455 0.00 0.00 0.00 4.02
660 685 3.641648 CAACAAACACACATGATCCACC 58.358 45.455 0.00 0.00 0.00 4.61
661 686 2.942804 ACAAACACACATGATCCACCA 58.057 42.857 0.00 0.00 0.00 4.17
662 687 2.622942 ACAAACACACATGATCCACCAC 59.377 45.455 0.00 0.00 0.00 4.16
663 688 2.886523 CAAACACACATGATCCACCACT 59.113 45.455 0.00 0.00 0.00 4.00
664 689 2.479566 ACACACATGATCCACCACTC 57.520 50.000 0.00 0.00 0.00 3.51
665 690 1.980765 ACACACATGATCCACCACTCT 59.019 47.619 0.00 0.00 0.00 3.24
666 691 2.373169 ACACACATGATCCACCACTCTT 59.627 45.455 0.00 0.00 0.00 2.85
667 692 3.181440 ACACACATGATCCACCACTCTTT 60.181 43.478 0.00 0.00 0.00 2.52
668 693 3.822735 CACACATGATCCACCACTCTTTT 59.177 43.478 0.00 0.00 0.00 2.27
669 694 4.279169 CACACATGATCCACCACTCTTTTT 59.721 41.667 0.00 0.00 0.00 1.94
697 722 1.991813 TCCCATGATCCACCACTCAAA 59.008 47.619 0.00 0.00 0.00 2.69
739 769 6.650120 TCGAAAGCCCTAATGATAACTCTTT 58.350 36.000 0.00 0.00 0.00 2.52
763 793 6.849085 ATCTTAGACGAGATCATTAGCCAT 57.151 37.500 0.00 0.00 30.67 4.40
809 843 0.240945 CCCGCAGCTTAACAAACCAG 59.759 55.000 0.00 0.00 0.00 4.00
898 932 3.875134 CCCATTAAAATACCGAACTCGCT 59.125 43.478 0.00 0.00 38.18 4.93
901 935 5.050567 CCATTAAAATACCGAACTCGCTACC 60.051 44.000 0.00 0.00 38.18 3.18
975 1012 3.792736 CGCCTCCCCGAATCCCAA 61.793 66.667 0.00 0.00 0.00 4.12
976 1013 2.927056 GCCTCCCCGAATCCCAAT 59.073 61.111 0.00 0.00 0.00 3.16
1408 1602 2.280628 GCTTGATTACGGTGGAAGGAG 58.719 52.381 0.00 0.00 0.00 3.69
1426 1736 7.042950 GGAAGGAGTTGGATTTAGTAGAACTC 58.957 42.308 0.00 0.00 41.12 3.01
1453 1763 1.341156 TGGGTTTTGCTTGTTGGGGG 61.341 55.000 0.00 0.00 0.00 5.40
1459 1769 0.178950 TTGCTTGTTGGGGGTATGCA 60.179 50.000 0.00 0.00 0.00 3.96
1462 1772 1.681264 GCTTGTTGGGGGTATGCATAC 59.319 52.381 25.74 25.74 0.00 2.39
1487 1797 0.968393 TTTGGGCCCTGTTATTCCGC 60.968 55.000 25.70 0.00 0.00 5.54
1632 2178 2.109126 GGAATGTCTGTGAGGCCGC 61.109 63.158 0.00 0.00 0.00 6.53
1666 2212 0.325296 TGGTCCGAAGACTAGGCCAT 60.325 55.000 5.01 0.00 43.05 4.40
1755 2301 4.184649 AGGACTGATTGGAAAGTTTGGT 57.815 40.909 0.00 0.00 0.00 3.67
1758 2304 4.051237 GACTGATTGGAAAGTTTGGTTGC 58.949 43.478 0.00 0.00 0.00 4.17
1774 2320 2.350522 GTTGCTAGTGTGCTGTGCTAT 58.649 47.619 0.00 0.00 0.00 2.97
1830 2376 5.177696 GTCACTGCTAGAGTCGTTTGAAAAT 59.822 40.000 0.00 0.00 29.75 1.82
1896 2442 8.174733 AGTGTTGAATTGTGAATCTTCTGATT 57.825 30.769 0.00 0.00 44.79 2.57
1897 2443 8.080417 AGTGTTGAATTGTGAATCTTCTGATTG 58.920 33.333 0.00 0.00 42.43 2.67
2035 2590 5.885912 ACCAATATTAAGATTCTTGCCGTGT 59.114 36.000 9.22 0.00 0.00 4.49
2043 2598 2.861462 TTCTTGCCGTGTGGAAAAAG 57.139 45.000 0.00 0.00 37.49 2.27
2049 2604 3.516615 TGCCGTGTGGAAAAAGAAAAAG 58.483 40.909 0.00 0.00 37.49 2.27
2053 2608 5.120986 GCCGTGTGGAAAAAGAAAAAGAAAA 59.879 36.000 0.00 0.00 37.49 2.29
2054 2609 6.347806 GCCGTGTGGAAAAAGAAAAAGAAAAA 60.348 34.615 0.00 0.00 37.49 1.94
2102 2756 4.804108 TGTTTGCTCCGTTTGGATATTTG 58.196 39.130 0.00 0.00 45.33 2.32
2261 2916 7.260558 AGGTTTGACTTGAAGTTTTAGCTAC 57.739 36.000 0.00 0.00 0.00 3.58
2671 3510 3.791973 AGCTTCTGTTCCATCTACTCG 57.208 47.619 0.00 0.00 0.00 4.18
2786 4794 7.390440 TGGTTAGATTAATTGAGTTGTCCAGTG 59.610 37.037 0.00 0.00 0.00 3.66
2794 4802 9.613428 TTAATTGAGTTGTCCAGTGGATATTAG 57.387 33.333 16.67 0.00 32.73 1.73
2795 4803 5.614324 TGAGTTGTCCAGTGGATATTAGG 57.386 43.478 16.67 0.00 32.73 2.69
2796 4804 4.141711 TGAGTTGTCCAGTGGATATTAGGC 60.142 45.833 16.67 0.45 32.73 3.93
2797 4805 3.780294 AGTTGTCCAGTGGATATTAGGCA 59.220 43.478 16.67 3.50 32.73 4.75
2798 4806 4.413520 AGTTGTCCAGTGGATATTAGGCAT 59.586 41.667 16.67 0.00 32.73 4.40
2799 4807 5.606749 AGTTGTCCAGTGGATATTAGGCATA 59.393 40.000 16.67 0.00 32.73 3.14
2800 4808 5.483685 TGTCCAGTGGATATTAGGCATAC 57.516 43.478 16.67 0.00 32.73 2.39
2801 4809 4.021456 TGTCCAGTGGATATTAGGCATACG 60.021 45.833 16.67 0.00 32.73 3.06
2803 4811 3.055819 CCAGTGGATATTAGGCATACGCT 60.056 47.826 1.68 0.00 38.60 5.07
2805 4813 4.389992 CAGTGGATATTAGGCATACGCTTG 59.610 45.833 0.00 0.00 38.60 4.01
2806 4814 4.283467 AGTGGATATTAGGCATACGCTTGA 59.717 41.667 0.00 0.00 38.60 3.02
2807 4815 4.627467 GTGGATATTAGGCATACGCTTGAG 59.373 45.833 0.00 0.00 38.60 3.02
2809 4817 5.221641 TGGATATTAGGCATACGCTTGAGTT 60.222 40.000 0.00 0.00 38.60 3.01
2810 4818 5.120830 GGATATTAGGCATACGCTTGAGTTG 59.879 44.000 0.00 0.00 38.60 3.16
2812 4820 1.726853 AGGCATACGCTTGAGTTGTC 58.273 50.000 0.00 0.00 38.60 3.18
2813 4821 0.727398 GGCATACGCTTGAGTTGTCC 59.273 55.000 0.00 0.00 38.60 4.02
2814 4822 1.438651 GCATACGCTTGAGTTGTCCA 58.561 50.000 0.00 0.00 34.30 4.02
2815 4823 1.394917 GCATACGCTTGAGTTGTCCAG 59.605 52.381 0.00 0.00 34.30 3.86
2816 4824 2.688507 CATACGCTTGAGTTGTCCAGT 58.311 47.619 0.00 0.00 0.00 4.00
2818 4826 0.532862 ACGCTTGAGTTGTCCAGTGG 60.533 55.000 1.40 1.40 31.60 4.00
2820 4828 1.609061 CGCTTGAGTTGTCCAGTGGAT 60.609 52.381 16.67 0.00 32.73 3.41
2821 4829 2.353704 CGCTTGAGTTGTCCAGTGGATA 60.354 50.000 16.67 10.38 32.73 2.59
2822 4830 3.679917 CGCTTGAGTTGTCCAGTGGATAT 60.680 47.826 16.67 0.00 32.73 1.63
2823 4831 4.265073 GCTTGAGTTGTCCAGTGGATATT 58.735 43.478 16.67 4.08 32.73 1.28
2824 4832 4.095483 GCTTGAGTTGTCCAGTGGATATTG 59.905 45.833 16.67 2.30 32.73 1.90
2862 4931 3.719268 ATCTTGTGGTGTGGAGCAATA 57.281 42.857 0.00 0.00 0.00 1.90
2864 4933 3.411446 TCTTGTGGTGTGGAGCAATAAG 58.589 45.455 0.00 0.00 31.85 1.73
2952 5075 6.205464 AGTGAACACCATTTGTATCTGTCTTG 59.795 38.462 1.11 0.00 37.51 3.02
2968 5841 0.737219 CTTGTAGCTCCAATGCCAGC 59.263 55.000 0.00 0.00 35.73 4.85
2988 5861 5.396101 CCAGCTTGTCCTTTCTATCATCTGA 60.396 44.000 0.00 0.00 0.00 3.27
2996 5869 7.876582 TGTCCTTTCTATCATCTGATTGCATAG 59.123 37.037 0.00 0.00 36.05 2.23
3100 5973 8.819974 GCAGCTACAATATGTTATGCAAATTTT 58.180 29.630 0.00 0.00 34.30 1.82
3173 6053 7.828508 ATGATATGTATGTGCTTCCATTTGT 57.171 32.000 0.00 0.00 0.00 2.83
3190 6070 8.862325 TCCATTTGTTACTGTTGATAGTTGAT 57.138 30.769 0.00 0.00 32.19 2.57
3191 6071 9.952030 TCCATTTGTTACTGTTGATAGTTGATA 57.048 29.630 0.00 0.00 32.19 2.15
3192 6072 9.988350 CCATTTGTTACTGTTGATAGTTGATAC 57.012 33.333 0.00 0.00 32.19 2.24
3195 6075 8.997621 TTGTTACTGTTGATAGTTGATACTCC 57.002 34.615 0.00 0.00 35.78 3.85
3196 6076 7.553334 TGTTACTGTTGATAGTTGATACTCCC 58.447 38.462 0.00 0.00 35.78 4.30
3197 6077 7.399191 TGTTACTGTTGATAGTTGATACTCCCT 59.601 37.037 0.00 0.00 35.78 4.20
3198 6078 6.472686 ACTGTTGATAGTTGATACTCCCTC 57.527 41.667 0.00 0.00 35.78 4.30
3199 6079 5.364157 ACTGTTGATAGTTGATACTCCCTCC 59.636 44.000 0.00 0.00 35.78 4.30
3200 6080 5.277250 TGTTGATAGTTGATACTCCCTCCA 58.723 41.667 0.00 0.00 35.78 3.86
3201 6081 5.905331 TGTTGATAGTTGATACTCCCTCCAT 59.095 40.000 0.00 0.00 35.78 3.41
3202 6082 6.042093 TGTTGATAGTTGATACTCCCTCCATC 59.958 42.308 0.00 0.00 35.78 3.51
3203 6083 5.715921 TGATAGTTGATACTCCCTCCATCA 58.284 41.667 0.00 0.00 35.78 3.07
3204 6084 6.143206 TGATAGTTGATACTCCCTCCATCAA 58.857 40.000 0.00 0.00 36.57 2.57
3208 6088 5.512942 TTGATACTCCCTCCATCAACAAA 57.487 39.130 0.00 0.00 34.58 2.83
3209 6089 5.715439 TGATACTCCCTCCATCAACAAAT 57.285 39.130 0.00 0.00 0.00 2.32
3210 6090 6.823286 TGATACTCCCTCCATCAACAAATA 57.177 37.500 0.00 0.00 0.00 1.40
3211 6091 7.392766 TGATACTCCCTCCATCAACAAATAT 57.607 36.000 0.00 0.00 0.00 1.28
3212 6092 8.504811 TGATACTCCCTCCATCAACAAATATA 57.495 34.615 0.00 0.00 0.00 0.86
3213 6093 8.944138 TGATACTCCCTCCATCAACAAATATAA 58.056 33.333 0.00 0.00 0.00 0.98
3214 6094 9.442047 GATACTCCCTCCATCAACAAATATAAG 57.558 37.037 0.00 0.00 0.00 1.73
3215 6095 7.451731 ACTCCCTCCATCAACAAATATAAGA 57.548 36.000 0.00 0.00 0.00 2.10
3216 6096 7.512992 ACTCCCTCCATCAACAAATATAAGAG 58.487 38.462 0.00 0.00 0.00 2.85
3217 6097 6.299141 TCCCTCCATCAACAAATATAAGAGC 58.701 40.000 0.00 0.00 0.00 4.09
3218 6098 5.180117 CCCTCCATCAACAAATATAAGAGCG 59.820 44.000 0.00 0.00 0.00 5.03
3219 6099 5.760253 CCTCCATCAACAAATATAAGAGCGT 59.240 40.000 0.00 0.00 0.00 5.07
3220 6100 6.260936 CCTCCATCAACAAATATAAGAGCGTT 59.739 38.462 0.00 0.00 0.00 4.84
3221 6101 7.201732 CCTCCATCAACAAATATAAGAGCGTTT 60.202 37.037 0.00 0.00 0.00 3.60
3222 6102 8.725405 TCCATCAACAAATATAAGAGCGTTTA 57.275 30.769 0.00 0.00 0.00 2.01
3223 6103 8.826710 TCCATCAACAAATATAAGAGCGTTTAG 58.173 33.333 0.00 0.00 0.00 1.85
3224 6104 8.826710 CCATCAACAAATATAAGAGCGTTTAGA 58.173 33.333 0.00 0.00 0.00 2.10
3227 6107 9.594478 TCAACAAATATAAGAGCGTTTAGATCA 57.406 29.630 0.00 0.00 37.82 2.92
3228 6108 9.638300 CAACAAATATAAGAGCGTTTAGATCAC 57.362 33.333 0.00 0.00 37.82 3.06
3229 6109 9.601217 AACAAATATAAGAGCGTTTAGATCACT 57.399 29.630 0.00 0.00 37.82 3.41
3236 6116 9.953697 ATAAGAGCGTTTAGATCACTACTTTAG 57.046 33.333 0.00 0.00 37.82 1.85
3237 6117 7.393841 AGAGCGTTTAGATCACTACTTTAGT 57.606 36.000 0.00 0.00 37.82 2.24
3270 6150 9.620259 AAAGCTCTTATATTTCTTTACAGAGGG 57.380 33.333 0.00 0.00 0.00 4.30
3271 6151 8.554490 AGCTCTTATATTTCTTTACAGAGGGA 57.446 34.615 0.00 0.00 0.00 4.20
3272 6152 8.646900 AGCTCTTATATTTCTTTACAGAGGGAG 58.353 37.037 0.00 0.00 0.00 4.30
3293 6173 6.069331 GGAGTACTTACCAGTCATGATCCTA 58.931 44.000 0.00 0.00 34.06 2.94
3306 6186 2.470990 TGATCCTACTGGCAGTGTCAT 58.529 47.619 29.65 17.09 0.00 3.06
3339 6219 6.069088 TCACTGATCCTAATACCCATTTTGGT 60.069 38.462 0.00 0.00 42.62 3.67
3374 6254 9.327628 GTAACTAATGAAGTATCTTCTTTCCCC 57.672 37.037 11.82 0.00 37.50 4.81
3387 6267 6.301486 TCTTCTTTCCCCCTTTTACAGTTAC 58.699 40.000 0.00 0.00 0.00 2.50
3467 6348 5.726397 GAAAGTACTTTTCCTCTCCTCTCC 58.274 45.833 21.40 1.16 39.43 3.71
3468 6349 4.685513 AGTACTTTTCCTCTCCTCTCCT 57.314 45.455 0.00 0.00 0.00 3.69
3469 6350 4.606210 AGTACTTTTCCTCTCCTCTCCTC 58.394 47.826 0.00 0.00 0.00 3.71
3732 6613 4.947388 GTGGTTCTACATAGCCCAATTTCA 59.053 41.667 0.00 0.00 0.00 2.69
3955 6837 6.775234 TTCCCTAAAGGTCTTAAAACTCCT 57.225 37.500 0.00 0.00 36.75 3.69
4034 6918 3.702548 GGAAATTAATAGTTGGCCCCGTT 59.297 43.478 0.00 0.00 0.00 4.44
4049 6933 2.184167 CGTTCCAGTTTGGTGGCGT 61.184 57.895 0.00 0.00 39.03 5.68
4111 6995 9.413734 CTCTATATTGTTTTCCCCATTCTCTTT 57.586 33.333 0.00 0.00 0.00 2.52
4173 7057 0.824109 CTGAACCGATGACCCTAGCA 59.176 55.000 0.00 0.00 0.00 3.49
4176 7060 0.978146 AACCGATGACCCTAGCAGCT 60.978 55.000 0.00 0.00 0.00 4.24
4249 7133 1.212935 AGCCAGTTCACCTGTTCACTT 59.787 47.619 0.00 0.00 39.74 3.16
4266 7150 7.092716 TGTTCACTTACCGGTCTTATAAGTTC 58.907 38.462 12.40 8.35 37.10 3.01
4445 7330 3.963129 TCTGATTATGGTGGTTTGGGAC 58.037 45.455 0.00 0.00 0.00 4.46
4465 7350 2.223595 ACGAGATGACTGTTCCATAGCG 60.224 50.000 0.00 0.00 0.00 4.26
4479 7364 5.745312 TCCATAGCGACATCAATATTCCT 57.255 39.130 0.00 0.00 0.00 3.36
4543 7428 2.415090 GGCTGATGATGTTGTTGACTGC 60.415 50.000 0.00 0.00 0.00 4.40
4666 7551 6.485648 ACATTAAGCACCTAAAGAAGTTCGTT 59.514 34.615 9.06 9.06 0.00 3.85
4743 7628 5.259632 CCCTTCAGATCTTGAAACAGGATT 58.740 41.667 0.00 0.00 44.84 3.01
4774 7659 4.269183 TGGAGAGTTCAAGAAAAAGCACA 58.731 39.130 0.00 0.00 0.00 4.57
5157 8042 8.528044 TGAAAATAGTGGAAGGTTAGTTTTGT 57.472 30.769 0.00 0.00 0.00 2.83
5347 8232 3.264193 ACATCAAGAATGCTACTCCCACA 59.736 43.478 0.00 0.00 39.12 4.17
5348 8233 3.334583 TCAAGAATGCTACTCCCACAC 57.665 47.619 0.00 0.00 0.00 3.82
5405 8293 8.846943 ACATAAGTTGTATCATTTCACTGTCA 57.153 30.769 0.00 0.00 36.57 3.58
5407 8295 9.712359 CATAAGTTGTATCATTTCACTGTCATG 57.288 33.333 0.00 0.00 0.00 3.07
5508 8396 8.950210 TCTTCAAATATGGATTTCTGTCACTTC 58.050 33.333 0.00 0.00 32.73 3.01
5517 8405 6.183360 TGGATTTCTGTCACTTCATTGCTTTT 60.183 34.615 0.00 0.00 0.00 2.27
5531 8419 7.400599 TCATTGCTTTTTCATAGAGCTTGAT 57.599 32.000 0.00 0.00 37.32 2.57
5541 8429 7.563888 TTCATAGAGCTTGATCTTGAAATGG 57.436 36.000 0.00 0.00 30.47 3.16
5546 8434 6.366340 AGAGCTTGATCTTGAAATGGATCAT 58.634 36.000 6.49 0.00 44.86 2.45
5606 8494 5.070847 TCAATGCTCATGTTCTAGCTATCCA 59.929 40.000 5.79 0.00 39.53 3.41
5715 9334 2.355108 CCCGTTGGACATGATGTCTTCT 60.355 50.000 23.28 0.00 46.19 2.85
5717 9336 2.094894 CGTTGGACATGATGTCTTCTGC 59.905 50.000 23.28 8.44 46.19 4.26
5727 9346 5.164620 TGATGTCTTCTGCCATTTCTACA 57.835 39.130 0.00 0.00 0.00 2.74
5731 9350 6.500684 TGTCTTCTGCCATTTCTACAATTC 57.499 37.500 0.00 0.00 0.00 2.17
5777 9396 4.519540 ATGTACTGCCCATTGTTTCAAC 57.480 40.909 0.00 0.00 0.00 3.18
5794 9413 8.093659 TGTTTCAACTATCGATGACAAAATCA 57.906 30.769 8.54 0.55 43.13 2.57
5825 9444 6.155827 GCATTTAACCACTGCATAAAGAACA 58.844 36.000 0.00 0.00 35.96 3.18
5826 9445 6.308766 GCATTTAACCACTGCATAAAGAACAG 59.691 38.462 0.00 0.00 35.96 3.16
5828 9447 7.759489 TTTAACCACTGCATAAAGAACAGAT 57.241 32.000 0.00 0.00 35.38 2.90
5853 9472 5.523438 TTTCCCCAACATAAACAGACAAC 57.477 39.130 0.00 0.00 0.00 3.32
5969 9588 1.895020 ATGGCATGGGCAGCAACTTG 61.895 55.000 0.00 0.00 42.43 3.16
5970 9589 2.433664 GCATGGGCAGCAACTTGC 60.434 61.111 5.55 5.55 45.46 4.01
5987 9606 8.112099 GCAACTTGCATATTCTGAAATACAAG 57.888 34.615 8.97 17.08 44.26 3.16
5999 9618 5.705441 TCTGAAATACAAGCCATCGTCTTTT 59.295 36.000 0.00 0.00 0.00 2.27
6072 9691 7.754851 AGTTTGTACCCGATTTTAAAGATGT 57.245 32.000 0.00 0.00 0.00 3.06
6077 9696 5.622770 ACCCGATTTTAAAGATGTGTGTC 57.377 39.130 0.00 0.00 0.00 3.67
6084 9703 6.928979 TTTTAAAGATGTGTGTCCGAAGAA 57.071 33.333 0.00 0.00 0.00 2.52
6099 9718 7.376072 GTGTCCGAAGAATTTTACTTCAACAAG 59.624 37.037 0.00 0.00 42.39 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.512485 TGGAGCAAAACAAGCATGTG 57.488 45.000 0.00 0.00 40.46 3.21
1 2 3.756933 ATTGGAGCAAAACAAGCATGT 57.243 38.095 0.00 0.00 43.14 3.21
2 3 3.187637 CCAATTGGAGCAAAACAAGCATG 59.812 43.478 20.50 0.00 37.39 4.06
3 4 3.181452 ACCAATTGGAGCAAAACAAGCAT 60.181 39.130 31.22 0.00 38.94 3.79
4 5 2.170187 ACCAATTGGAGCAAAACAAGCA 59.830 40.909 31.22 0.00 38.94 3.91
5 6 2.837498 ACCAATTGGAGCAAAACAAGC 58.163 42.857 31.22 0.00 38.94 4.01
6 7 4.744631 GTGTACCAATTGGAGCAAAACAAG 59.255 41.667 31.22 0.00 38.94 3.16
7 8 4.688021 GTGTACCAATTGGAGCAAAACAA 58.312 39.130 31.22 3.36 38.94 2.83
8 9 3.243234 CGTGTACCAATTGGAGCAAAACA 60.243 43.478 31.22 18.83 38.94 2.83
9 10 3.305110 CGTGTACCAATTGGAGCAAAAC 58.695 45.455 31.22 15.62 38.94 2.43
10 11 2.294791 CCGTGTACCAATTGGAGCAAAA 59.705 45.455 31.22 5.64 38.94 2.44
11 12 1.883275 CCGTGTACCAATTGGAGCAAA 59.117 47.619 31.22 7.81 38.94 3.68
12 13 1.529226 CCGTGTACCAATTGGAGCAA 58.471 50.000 31.22 10.34 38.94 3.91
13 14 0.322098 CCCGTGTACCAATTGGAGCA 60.322 55.000 31.22 23.14 38.94 4.26
14 15 0.322187 ACCCGTGTACCAATTGGAGC 60.322 55.000 31.22 20.98 38.94 4.70
15 16 2.081462 GAACCCGTGTACCAATTGGAG 58.919 52.381 31.22 14.82 38.94 3.86
16 17 1.420514 TGAACCCGTGTACCAATTGGA 59.579 47.619 31.22 11.78 38.94 3.53
17 18 1.898902 TGAACCCGTGTACCAATTGG 58.101 50.000 23.31 23.31 42.17 3.16
18 19 3.064820 GCTATGAACCCGTGTACCAATTG 59.935 47.826 0.00 0.00 0.00 2.32
19 20 3.054655 AGCTATGAACCCGTGTACCAATT 60.055 43.478 0.00 0.00 0.00 2.32
20 21 2.504175 AGCTATGAACCCGTGTACCAAT 59.496 45.455 0.00 0.00 0.00 3.16
21 22 1.903860 AGCTATGAACCCGTGTACCAA 59.096 47.619 0.00 0.00 0.00 3.67
22 23 1.563924 AGCTATGAACCCGTGTACCA 58.436 50.000 0.00 0.00 0.00 3.25
23 24 3.806625 TTAGCTATGAACCCGTGTACC 57.193 47.619 0.00 0.00 0.00 3.34
24 25 6.483687 CAAATTTAGCTATGAACCCGTGTAC 58.516 40.000 0.00 0.00 0.00 2.90
25 26 5.065474 GCAAATTTAGCTATGAACCCGTGTA 59.935 40.000 0.00 0.00 0.00 2.90
26 27 4.142469 GCAAATTTAGCTATGAACCCGTGT 60.142 41.667 0.00 0.00 0.00 4.49
27 28 4.351192 GCAAATTTAGCTATGAACCCGTG 58.649 43.478 0.00 0.00 0.00 4.94
28 29 3.380320 GGCAAATTTAGCTATGAACCCGT 59.620 43.478 0.00 0.00 0.00 5.28
29 30 3.243401 GGGCAAATTTAGCTATGAACCCG 60.243 47.826 0.00 0.00 0.00 5.28
30 31 3.704061 TGGGCAAATTTAGCTATGAACCC 59.296 43.478 0.00 2.28 0.00 4.11
31 32 5.535753 ATGGGCAAATTTAGCTATGAACC 57.464 39.130 0.00 0.00 0.00 3.62
32 33 7.011389 GGAAAATGGGCAAATTTAGCTATGAAC 59.989 37.037 0.00 0.00 0.00 3.18
33 34 7.047271 GGAAAATGGGCAAATTTAGCTATGAA 58.953 34.615 0.00 0.00 0.00 2.57
34 35 6.581712 GGAAAATGGGCAAATTTAGCTATGA 58.418 36.000 0.00 0.00 0.00 2.15
35 36 5.463061 CGGAAAATGGGCAAATTTAGCTATG 59.537 40.000 0.00 0.00 0.00 2.23
36 37 5.600696 CGGAAAATGGGCAAATTTAGCTAT 58.399 37.500 0.00 5.43 0.00 2.97
37 38 4.679372 GCGGAAAATGGGCAAATTTAGCTA 60.679 41.667 10.88 0.00 0.00 3.32
38 39 3.860641 CGGAAAATGGGCAAATTTAGCT 58.139 40.909 10.88 0.00 0.00 3.32
39 40 2.351418 GCGGAAAATGGGCAAATTTAGC 59.649 45.455 0.00 0.00 0.00 3.09
40 41 2.935849 GGCGGAAAATGGGCAAATTTAG 59.064 45.455 0.00 0.00 0.00 1.85
41 42 2.355209 GGGCGGAAAATGGGCAAATTTA 60.355 45.455 0.00 0.00 0.00 1.40
42 43 1.612991 GGGCGGAAAATGGGCAAATTT 60.613 47.619 0.00 0.00 0.00 1.82
43 44 0.035534 GGGCGGAAAATGGGCAAATT 60.036 50.000 0.00 0.00 0.00 1.82
44 45 1.601703 GGGCGGAAAATGGGCAAAT 59.398 52.632 0.00 0.00 0.00 2.32
45 46 2.936912 CGGGCGGAAAATGGGCAAA 61.937 57.895 0.00 0.00 0.00 3.68
46 47 2.766306 TACGGGCGGAAAATGGGCAA 62.766 55.000 0.00 0.00 0.00 4.52
47 48 2.766306 TTACGGGCGGAAAATGGGCA 62.766 55.000 0.00 0.00 0.00 5.36
48 49 1.596895 TTTACGGGCGGAAAATGGGC 61.597 55.000 0.00 0.00 0.00 5.36
49 50 0.171679 GTTTACGGGCGGAAAATGGG 59.828 55.000 0.00 0.00 28.65 4.00
50 51 0.179184 CGTTTACGGGCGGAAAATGG 60.179 55.000 0.00 0.00 35.37 3.16
51 52 0.795358 GCGTTTACGGGCGGAAAATG 60.795 55.000 4.29 0.00 40.23 2.32
52 53 1.503091 GCGTTTACGGGCGGAAAAT 59.497 52.632 4.29 0.00 40.23 1.82
53 54 2.615387 GGCGTTTACGGGCGGAAAA 61.615 57.895 4.29 0.00 40.23 2.29
54 55 3.049074 GGCGTTTACGGGCGGAAA 61.049 61.111 4.29 0.00 40.23 3.13
59 60 1.083242 TATCAACGGCGTTTACGGGC 61.083 55.000 24.49 0.00 40.23 6.13
60 61 1.259507 CATATCAACGGCGTTTACGGG 59.740 52.381 24.49 11.73 40.23 5.28
61 62 2.195096 TCATATCAACGGCGTTTACGG 58.805 47.619 24.49 12.13 40.23 4.02
62 63 3.910862 TTCATATCAACGGCGTTTACG 57.089 42.857 24.49 12.53 43.27 3.18
63 64 6.199531 TCACTATTCATATCAACGGCGTTTAC 59.800 38.462 24.49 0.00 0.00 2.01
64 65 6.199531 GTCACTATTCATATCAACGGCGTTTA 59.800 38.462 24.49 16.68 0.00 2.01
65 66 5.006358 GTCACTATTCATATCAACGGCGTTT 59.994 40.000 24.49 12.64 0.00 3.60
66 67 4.506654 GTCACTATTCATATCAACGGCGTT 59.493 41.667 21.19 21.19 0.00 4.84
67 68 4.049186 GTCACTATTCATATCAACGGCGT 58.951 43.478 6.77 6.77 0.00 5.68
68 69 3.428870 GGTCACTATTCATATCAACGGCG 59.571 47.826 4.80 4.80 0.00 6.46
69 70 4.211374 GTGGTCACTATTCATATCAACGGC 59.789 45.833 0.00 0.00 0.00 5.68
70 71 5.601662 AGTGGTCACTATTCATATCAACGG 58.398 41.667 1.24 0.00 40.43 4.44
217 220 5.912892 TCGAGGTGATTCAAGTATATGCAA 58.087 37.500 0.00 0.00 0.00 4.08
219 222 6.754209 CCTATCGAGGTGATTCAAGTATATGC 59.246 42.308 0.00 0.00 38.16 3.14
222 225 6.010850 AGCCTATCGAGGTGATTCAAGTATA 58.989 40.000 0.00 0.00 45.78 1.47
234 237 4.442706 CATTGTGTAAAGCCTATCGAGGT 58.557 43.478 0.00 0.00 45.78 3.85
237 240 3.867857 TGCATTGTGTAAAGCCTATCGA 58.132 40.909 0.00 0.00 29.78 3.59
269 273 5.504665 CGGCCTTTGTCTCATCATTGTAATC 60.505 44.000 0.00 0.00 0.00 1.75
292 296 3.003312 CGTCTCTCGTCGATGTTTAAACG 60.003 47.826 13.45 2.27 36.50 3.60
293 297 4.465966 CGTCTCTCGTCGATGTTTAAAC 57.534 45.455 11.54 11.54 34.52 2.01
307 316 2.612221 CCAAGTTTGGGGTACGTCTCTC 60.612 54.545 2.87 0.00 44.70 3.20
318 327 5.600977 CAACCTTGTCTGCCAAGTTTGGG 62.601 52.174 12.54 0.00 45.05 4.12
328 337 4.826556 ACTCTATCTTCAACCTTGTCTGC 58.173 43.478 0.00 0.00 0.00 4.26
335 344 6.017192 TGTGTTCCTACTCTATCTTCAACCT 58.983 40.000 0.00 0.00 0.00 3.50
413 422 2.798283 GTCTTTTCCAACGTCGATGTGA 59.202 45.455 11.82 2.08 0.00 3.58
427 436 3.496155 CGGTGTAGGTAGACGTCTTTTC 58.504 50.000 25.44 14.12 0.00 2.29
436 446 0.686441 AGCATGGCGGTGTAGGTAGA 60.686 55.000 0.00 0.00 0.00 2.59
486 499 5.875910 TCTCGGTGTTTGTTTGTTTCTTCTA 59.124 36.000 0.00 0.00 0.00 2.10
488 501 4.976987 TCTCGGTGTTTGTTTGTTTCTTC 58.023 39.130 0.00 0.00 0.00 2.87
534 549 1.095600 CCTCGTCTTCGATCACCTCA 58.904 55.000 0.00 0.00 45.21 3.86
548 573 3.823330 GTCGACGCATCCCCTCGT 61.823 66.667 0.00 0.00 42.09 4.18
573 598 1.472878 TGCGATCTAGCAAAGACGTCT 59.527 47.619 13.58 13.58 45.06 4.18
587 612 3.438360 GAAATTTGGTCACCATGCGATC 58.562 45.455 0.00 0.00 31.53 3.69
608 633 4.440839 AAGAGTTTAGGGTACGTAACGG 57.559 45.455 4.19 0.00 38.46 4.44
617 642 7.286775 TGTTGCTAATTTGAAAGAGTTTAGGGT 59.713 33.333 0.00 0.00 0.00 4.34
630 655 6.567959 TCATGTGTGTTTGTTGCTAATTTGA 58.432 32.000 0.00 0.00 0.00 2.69
640 665 3.068024 GTGGTGGATCATGTGTGTTTGTT 59.932 43.478 0.00 0.00 0.00 2.83
667 692 4.711355 GGTGGATCATGGGATTCTCAAAAA 59.289 41.667 0.00 0.00 32.67 1.94
668 693 4.264307 TGGTGGATCATGGGATTCTCAAAA 60.264 41.667 0.00 0.00 32.67 2.44
669 694 3.269118 TGGTGGATCATGGGATTCTCAAA 59.731 43.478 0.00 0.00 32.67 2.69
670 695 2.851821 TGGTGGATCATGGGATTCTCAA 59.148 45.455 0.00 0.00 32.67 3.02
671 696 2.173356 GTGGTGGATCATGGGATTCTCA 59.827 50.000 0.00 0.00 32.67 3.27
672 697 2.441001 AGTGGTGGATCATGGGATTCTC 59.559 50.000 0.00 0.00 32.67 2.87
673 698 2.441001 GAGTGGTGGATCATGGGATTCT 59.559 50.000 0.00 0.00 32.67 2.40
674 699 2.173356 TGAGTGGTGGATCATGGGATTC 59.827 50.000 0.00 0.00 32.67 2.52
675 700 2.207988 TGAGTGGTGGATCATGGGATT 58.792 47.619 0.00 0.00 32.67 3.01
676 701 1.897473 TGAGTGGTGGATCATGGGAT 58.103 50.000 0.00 0.00 36.13 3.85
677 702 1.667595 TTGAGTGGTGGATCATGGGA 58.332 50.000 0.00 0.00 0.00 4.37
678 703 2.512692 TTTGAGTGGTGGATCATGGG 57.487 50.000 0.00 0.00 0.00 4.00
679 704 2.165030 GCTTTTGAGTGGTGGATCATGG 59.835 50.000 0.00 0.00 0.00 3.66
680 705 2.165030 GGCTTTTGAGTGGTGGATCATG 59.835 50.000 0.00 0.00 0.00 3.07
681 706 2.042162 AGGCTTTTGAGTGGTGGATCAT 59.958 45.455 0.00 0.00 0.00 2.45
682 707 1.425066 AGGCTTTTGAGTGGTGGATCA 59.575 47.619 0.00 0.00 0.00 2.92
683 708 2.206576 AGGCTTTTGAGTGGTGGATC 57.793 50.000 0.00 0.00 0.00 3.36
684 709 3.806949 TTAGGCTTTTGAGTGGTGGAT 57.193 42.857 0.00 0.00 0.00 3.41
685 710 3.073798 TCATTAGGCTTTTGAGTGGTGGA 59.926 43.478 0.00 0.00 0.00 4.02
686 711 3.420893 TCATTAGGCTTTTGAGTGGTGG 58.579 45.455 0.00 0.00 0.00 4.61
687 712 5.649782 AATCATTAGGCTTTTGAGTGGTG 57.350 39.130 0.00 0.00 0.00 4.17
717 747 9.785982 AGATAAAGAGTTATCATTAGGGCTTTC 57.214 33.333 8.70 0.00 45.59 2.62
739 769 7.946381 ATGGCTAATGATCTCGTCTAAGATA 57.054 36.000 0.00 0.00 36.13 1.98
744 774 7.309255 GGTTAGAATGGCTAATGATCTCGTCTA 60.309 40.741 0.00 0.00 40.94 2.59
745 775 6.451393 GTTAGAATGGCTAATGATCTCGTCT 58.549 40.000 0.00 0.00 40.94 4.18
746 776 5.635700 GGTTAGAATGGCTAATGATCTCGTC 59.364 44.000 0.00 0.00 40.94 4.20
747 777 5.070446 TGGTTAGAATGGCTAATGATCTCGT 59.930 40.000 0.00 0.00 40.94 4.18
748 778 5.406780 GTGGTTAGAATGGCTAATGATCTCG 59.593 44.000 0.00 0.00 40.94 4.04
750 780 6.506538 AGTGGTTAGAATGGCTAATGATCT 57.493 37.500 0.00 0.00 40.94 2.75
763 793 0.251297 TCCCGGTCGAGTGGTTAGAA 60.251 55.000 0.00 0.00 0.00 2.10
916 950 4.467107 GAGGAGGAGCGGGGGAGT 62.467 72.222 0.00 0.00 0.00 3.85
1371 1435 0.108138 AGCAACCTAACGCTAGCAGG 60.108 55.000 16.45 16.27 36.50 4.85
1408 1602 5.288952 GCAGACGAGTTCTACTAAATCCAAC 59.711 44.000 0.00 0.00 31.12 3.77
1426 1736 0.385390 AAGCAAAACCCAAGCAGACG 59.615 50.000 0.00 0.00 0.00 4.18
1453 1763 2.538132 GCCCAAACGTTCGTATGCATAC 60.538 50.000 24.27 24.27 0.00 2.39
1459 1769 0.675522 CAGGGCCCAAACGTTCGTAT 60.676 55.000 27.56 0.00 0.00 3.06
1462 1772 0.885596 TAACAGGGCCCAAACGTTCG 60.886 55.000 27.56 3.70 0.00 3.95
1494 1804 8.115490 ACCTTGAAGATTAAACTTCCATCAAG 57.885 34.615 19.34 16.29 43.67 3.02
1495 1805 7.723616 TGACCTTGAAGATTAAACTTCCATCAA 59.276 33.333 19.34 9.36 43.67 2.57
1496 1806 7.230747 TGACCTTGAAGATTAAACTTCCATCA 58.769 34.615 19.34 14.60 43.67 3.07
1581 1891 5.626543 CGACAACCTCAATCAAATCACAAAG 59.373 40.000 0.00 0.00 0.00 2.77
1611 2152 0.678048 GGCCTCACAGACATTCCCAC 60.678 60.000 0.00 0.00 0.00 4.61
1632 2178 0.462047 GACCACCCAGCCGATAACAG 60.462 60.000 0.00 0.00 0.00 3.16
1666 2212 8.187913 TCAAATCAACCAATTATTGACCAGAA 57.812 30.769 6.50 0.00 38.84 3.02
1755 2301 2.768253 ATAGCACAGCACACTAGCAA 57.232 45.000 0.00 0.00 36.85 3.91
1758 2304 3.615937 CACTGAATAGCACAGCACACTAG 59.384 47.826 0.00 0.00 38.74 2.57
1774 2320 1.342174 GTAGACGTTCCCACCACTGAA 59.658 52.381 0.00 0.00 0.00 3.02
1830 2376 2.717580 ACGTGCACAGATACGAGAAA 57.282 45.000 18.64 0.00 42.54 2.52
2053 2608 9.341078 ACAATGATGCAAACCTTTTATCTTTTT 57.659 25.926 0.00 0.00 0.00 1.94
2054 2609 8.907222 ACAATGATGCAAACCTTTTATCTTTT 57.093 26.923 0.00 0.00 0.00 2.27
2055 2610 8.776470 CAACAATGATGCAAACCTTTTATCTTT 58.224 29.630 0.00 0.00 0.00 2.52
2056 2611 7.933033 ACAACAATGATGCAAACCTTTTATCTT 59.067 29.630 0.00 0.00 0.00 2.40
2057 2612 7.444299 ACAACAATGATGCAAACCTTTTATCT 58.556 30.769 0.00 0.00 0.00 1.98
2058 2613 7.656707 ACAACAATGATGCAAACCTTTTATC 57.343 32.000 0.00 0.00 0.00 1.75
2122 2776 8.477256 CCCCATTTTCATCATTAACAGTACAAT 58.523 33.333 0.00 0.00 0.00 2.71
2125 2779 6.379988 ACCCCCATTTTCATCATTAACAGTAC 59.620 38.462 0.00 0.00 0.00 2.73
2197 2852 8.166706 GGTACAACAGAAACGATTACTACAATG 58.833 37.037 0.00 0.00 0.00 2.82
2201 2856 6.183360 GCAGGTACAACAGAAACGATTACTAC 60.183 42.308 0.00 0.00 0.00 2.73
2206 2861 3.472652 TGCAGGTACAACAGAAACGATT 58.527 40.909 0.00 0.00 0.00 3.34
2671 3510 1.692411 AAAGCCTGACCCACTCAAAC 58.308 50.000 0.00 0.00 0.00 2.93
2746 4751 6.743575 AATCTAACCAGTAAACACATCTGC 57.256 37.500 0.00 0.00 0.00 4.26
2786 4794 4.822026 ACTCAAGCGTATGCCTAATATCC 58.178 43.478 2.51 0.00 44.31 2.59
2794 4802 0.727398 GGACAACTCAAGCGTATGCC 59.273 55.000 2.51 0.00 44.31 4.40
2795 4803 1.394917 CTGGACAACTCAAGCGTATGC 59.605 52.381 0.00 0.00 43.24 3.14
2796 4804 2.413112 CACTGGACAACTCAAGCGTATG 59.587 50.000 0.00 0.00 0.00 2.39
2797 4805 2.612972 CCACTGGACAACTCAAGCGTAT 60.613 50.000 0.00 0.00 0.00 3.06
2798 4806 1.270094 CCACTGGACAACTCAAGCGTA 60.270 52.381 0.00 0.00 0.00 4.42
2799 4807 0.532862 CCACTGGACAACTCAAGCGT 60.533 55.000 0.00 0.00 0.00 5.07
2800 4808 0.249868 TCCACTGGACAACTCAAGCG 60.250 55.000 0.00 0.00 0.00 4.68
2801 4809 2.191128 ATCCACTGGACAACTCAAGC 57.809 50.000 0.00 0.00 32.98 4.01
2803 4811 4.567537 CCCAATATCCACTGGACAACTCAA 60.568 45.833 0.00 0.00 32.98 3.02
2805 4813 3.545703 CCCAATATCCACTGGACAACTC 58.454 50.000 0.00 0.00 32.98 3.01
2806 4814 2.357154 GCCCAATATCCACTGGACAACT 60.357 50.000 0.00 0.00 32.98 3.16
2807 4815 2.024414 GCCCAATATCCACTGGACAAC 58.976 52.381 0.00 0.00 32.98 3.32
2809 4817 1.294041 TGCCCAATATCCACTGGACA 58.706 50.000 0.00 0.00 32.98 4.02
2810 4818 2.664402 ATGCCCAATATCCACTGGAC 57.336 50.000 0.00 0.00 32.98 4.02
2812 4820 2.376518 AGGTATGCCCAATATCCACTGG 59.623 50.000 0.00 0.00 34.66 4.00
2813 4821 3.795688 AGGTATGCCCAATATCCACTG 57.204 47.619 0.00 0.00 34.66 3.66
2814 4822 4.503398 ACTAGGTATGCCCAATATCCACT 58.497 43.478 0.00 0.00 34.66 4.00
2815 4823 4.910458 ACTAGGTATGCCCAATATCCAC 57.090 45.455 0.00 0.00 34.66 4.02
2816 4824 5.371176 TGAAACTAGGTATGCCCAATATCCA 59.629 40.000 0.00 0.00 34.66 3.41
2818 4826 7.817418 TTTGAAACTAGGTATGCCCAATATC 57.183 36.000 0.00 0.00 34.66 1.63
2820 4828 7.582719 AGATTTGAAACTAGGTATGCCCAATA 58.417 34.615 0.00 0.00 34.66 1.90
2821 4829 6.435164 AGATTTGAAACTAGGTATGCCCAAT 58.565 36.000 0.00 0.00 34.66 3.16
2822 4830 5.826643 AGATTTGAAACTAGGTATGCCCAA 58.173 37.500 0.00 0.00 34.66 4.12
2823 4831 5.450818 AGATTTGAAACTAGGTATGCCCA 57.549 39.130 0.00 0.00 34.66 5.36
2824 4832 5.652452 ACAAGATTTGAAACTAGGTATGCCC 59.348 40.000 0.00 0.00 34.57 5.36
2862 4931 4.631813 GGAGACACGATAGAACAATTGCTT 59.368 41.667 5.05 0.00 41.38 3.91
2864 4933 3.932710 TGGAGACACGATAGAACAATTGC 59.067 43.478 5.05 0.00 41.38 3.56
2952 5075 0.737219 CAAGCTGGCATTGGAGCTAC 59.263 55.000 0.00 0.00 44.97 3.58
2968 5841 6.541278 TGCAATCAGATGATAGAAAGGACAAG 59.459 38.462 0.00 0.00 33.73 3.16
2988 5861 5.047092 CCCTTTGGAAAGTCAACTATGCAAT 60.047 40.000 0.00 0.00 34.20 3.56
2996 5869 5.561679 AGATAGACCCTTTGGAAAGTCAAC 58.438 41.667 0.00 0.00 34.20 3.18
3100 5973 9.988815 GCAAGTAATCTATAAGAAATCTCCTCA 57.011 33.333 0.00 0.00 0.00 3.86
3117 5990 6.487689 ACACAGAGCTTAAAGCAAGTAATC 57.512 37.500 0.00 0.00 45.56 1.75
3162 6040 7.145932 ACTATCAACAGTAACAAATGGAAGC 57.854 36.000 0.00 0.00 0.00 3.86
3173 6053 7.069578 GGAGGGAGTATCAACTATCAACAGTAA 59.930 40.741 0.00 0.00 35.56 2.24
3190 6070 8.561536 TCTTATATTTGTTGATGGAGGGAGTA 57.438 34.615 0.00 0.00 0.00 2.59
3191 6071 7.451731 TCTTATATTTGTTGATGGAGGGAGT 57.548 36.000 0.00 0.00 0.00 3.85
3192 6072 6.429385 GCTCTTATATTTGTTGATGGAGGGAG 59.571 42.308 0.00 0.00 0.00 4.30
3193 6073 6.299141 GCTCTTATATTTGTTGATGGAGGGA 58.701 40.000 0.00 0.00 0.00 4.20
3194 6074 5.180117 CGCTCTTATATTTGTTGATGGAGGG 59.820 44.000 0.00 0.00 0.00 4.30
3195 6075 5.760253 ACGCTCTTATATTTGTTGATGGAGG 59.240 40.000 0.00 0.00 0.00 4.30
3196 6076 6.851222 ACGCTCTTATATTTGTTGATGGAG 57.149 37.500 0.00 0.00 0.00 3.86
3197 6077 7.624360 AAACGCTCTTATATTTGTTGATGGA 57.376 32.000 0.00 0.00 0.00 3.41
3198 6078 8.826710 TCTAAACGCTCTTATATTTGTTGATGG 58.173 33.333 0.00 0.00 0.00 3.51
3201 6081 9.594478 TGATCTAAACGCTCTTATATTTGTTGA 57.406 29.630 0.00 0.00 0.00 3.18
3202 6082 9.638300 GTGATCTAAACGCTCTTATATTTGTTG 57.362 33.333 0.00 0.00 0.00 3.33
3203 6083 9.601217 AGTGATCTAAACGCTCTTATATTTGTT 57.399 29.630 0.00 0.00 0.00 2.83
3210 6090 9.953697 CTAAAGTAGTGATCTAAACGCTCTTAT 57.046 33.333 0.00 0.00 0.00 1.73
3211 6091 8.954350 ACTAAAGTAGTGATCTAAACGCTCTTA 58.046 33.333 0.00 0.00 37.69 2.10
3212 6092 7.828712 ACTAAAGTAGTGATCTAAACGCTCTT 58.171 34.615 0.00 0.00 37.69 2.85
3213 6093 7.393841 ACTAAAGTAGTGATCTAAACGCTCT 57.606 36.000 0.00 0.00 37.69 4.09
3244 6124 9.620259 CCCTCTGTAAAGAAATATAAGAGCTTT 57.380 33.333 0.00 0.00 33.76 3.51
3245 6125 8.993424 TCCCTCTGTAAAGAAATATAAGAGCTT 58.007 33.333 0.00 0.00 0.00 3.74
3246 6126 8.554490 TCCCTCTGTAAAGAAATATAAGAGCT 57.446 34.615 0.00 0.00 0.00 4.09
3247 6127 8.425703 ACTCCCTCTGTAAAGAAATATAAGAGC 58.574 37.037 0.00 0.00 0.00 4.09
3254 6134 8.975295 GGTAAGTACTCCCTCTGTAAAGAAATA 58.025 37.037 0.00 0.00 0.00 1.40
3255 6135 7.456902 TGGTAAGTACTCCCTCTGTAAAGAAAT 59.543 37.037 11.62 0.00 0.00 2.17
3256 6136 6.783977 TGGTAAGTACTCCCTCTGTAAAGAAA 59.216 38.462 11.62 0.00 0.00 2.52
3257 6137 6.317312 TGGTAAGTACTCCCTCTGTAAAGAA 58.683 40.000 11.62 0.00 0.00 2.52
3258 6138 5.895807 TGGTAAGTACTCCCTCTGTAAAGA 58.104 41.667 11.62 0.00 0.00 2.52
3259 6139 5.715753 ACTGGTAAGTACTCCCTCTGTAAAG 59.284 44.000 11.62 3.35 33.79 1.85
3260 6140 5.648247 ACTGGTAAGTACTCCCTCTGTAAA 58.352 41.667 11.62 0.00 33.79 2.01
3261 6141 5.222192 TGACTGGTAAGTACTCCCTCTGTAA 60.222 44.000 11.62 1.56 36.52 2.41
3262 6142 4.290459 TGACTGGTAAGTACTCCCTCTGTA 59.710 45.833 11.62 0.00 36.52 2.74
3263 6143 3.075582 TGACTGGTAAGTACTCCCTCTGT 59.924 47.826 11.62 8.33 36.52 3.41
3264 6144 3.698289 TGACTGGTAAGTACTCCCTCTG 58.302 50.000 11.62 5.95 36.52 3.35
3265 6145 4.017407 TCATGACTGGTAAGTACTCCCTCT 60.017 45.833 11.62 0.00 36.52 3.69
3266 6146 4.279145 TCATGACTGGTAAGTACTCCCTC 58.721 47.826 11.62 4.27 36.52 4.30
3267 6147 4.332683 TCATGACTGGTAAGTACTCCCT 57.667 45.455 11.62 0.00 36.52 4.20
3268 6148 4.039366 GGATCATGACTGGTAAGTACTCCC 59.961 50.000 0.00 0.00 36.52 4.30
3269 6149 4.896482 AGGATCATGACTGGTAAGTACTCC 59.104 45.833 0.00 0.00 36.52 3.85
3270 6150 6.773685 AGTAGGATCATGACTGGTAAGTACTC 59.226 42.308 0.00 0.00 36.52 2.59
3271 6151 6.547880 CAGTAGGATCATGACTGGTAAGTACT 59.452 42.308 0.00 0.00 36.52 2.73
3272 6152 6.740110 CAGTAGGATCATGACTGGTAAGTAC 58.260 44.000 0.00 0.00 36.52 2.73
3293 6173 7.658982 CAGTGAAATATATATGACACTGCCAGT 59.341 37.037 28.86 0.00 44.86 4.00
3364 6244 5.180680 CGTAACTGTAAAAGGGGGAAAGAAG 59.819 44.000 0.00 0.00 0.00 2.85
3374 6254 8.712285 TCCAGAATAATCGTAACTGTAAAAGG 57.288 34.615 0.00 0.00 0.00 3.11
3387 6267 3.313012 TGCCCGTATCCAGAATAATCG 57.687 47.619 0.00 0.00 0.00 3.34
3402 6282 0.820891 CCTTCCCAGATGATTGCCCG 60.821 60.000 0.00 0.00 0.00 6.13
3465 6346 2.065799 AGAAAGCAAAGGGGAAGAGGA 58.934 47.619 0.00 0.00 0.00 3.71
3466 6347 2.165998 CAGAAAGCAAAGGGGAAGAGG 58.834 52.381 0.00 0.00 0.00 3.69
3467 6348 2.868899 ACAGAAAGCAAAGGGGAAGAG 58.131 47.619 0.00 0.00 0.00 2.85
3468 6349 3.312736 AACAGAAAGCAAAGGGGAAGA 57.687 42.857 0.00 0.00 0.00 2.87
3469 6350 4.406648 AAAACAGAAAGCAAAGGGGAAG 57.593 40.909 0.00 0.00 0.00 3.46
3732 6613 5.843421 AGGATACATTACTCTCAAGCCAGAT 59.157 40.000 0.00 0.00 41.41 2.90
3987 6870 4.188247 TCATAGAGGAAAGAACACCACG 57.812 45.455 0.00 0.00 0.00 4.94
4018 6902 1.210967 CTGGAACGGGGCCAACTATTA 59.789 52.381 4.39 0.00 34.44 0.98
4034 6918 2.203280 CCACGCCACCAAACTGGA 60.203 61.111 0.00 0.00 40.96 3.86
4049 6933 2.394506 GGGCTCCAATCCATCCCCA 61.395 63.158 0.00 0.00 32.71 4.96
4111 6995 9.023962 AGAAGCATCCAACTTGAAACATATTTA 57.976 29.630 0.00 0.00 0.00 1.40
4147 7031 4.721132 AGGGTCATCGGTTCAGTTTTTAA 58.279 39.130 0.00 0.00 0.00 1.52
4155 7039 0.824109 CTGCTAGGGTCATCGGTTCA 59.176 55.000 0.00 0.00 0.00 3.18
4173 7057 1.059913 AGTGAACCAACAGCCTAGCT 58.940 50.000 0.00 0.00 40.77 3.32
4176 7060 1.136828 ACCAGTGAACCAACAGCCTA 58.863 50.000 0.00 0.00 0.00 3.93
4221 7105 0.179018 GGTGAACTGGCTGTTGGACT 60.179 55.000 14.80 0.00 39.30 3.85
4307 7191 4.546570 TCTATCGCTTTACATGTGATCGG 58.453 43.478 9.11 0.05 36.29 4.18
4309 7193 9.197694 ACTTAATCTATCGCTTTACATGTGATC 57.802 33.333 9.11 0.00 36.29 2.92
4343 7227 3.417069 AGGCATTACAACAGTACAGCA 57.583 42.857 0.00 0.00 0.00 4.41
4437 7322 2.457366 ACAGTCATCTCGTCCCAAAC 57.543 50.000 0.00 0.00 0.00 2.93
4666 7551 2.023404 TGGGGACTTCTCTATGGCTGTA 60.023 50.000 0.00 0.00 0.00 2.74
4743 7628 8.746052 TTTTCTTGAACTCTCCATACTTTCAA 57.254 30.769 0.00 0.00 35.45 2.69
4774 7659 3.331889 ACCTTGATTTGTCCCTCACATCT 59.668 43.478 0.00 0.00 35.13 2.90
5026 7911 2.555325 TGCATTGCAAGAGTCAAGAAGG 59.445 45.455 9.33 0.00 34.76 3.46
5280 8165 1.152756 GGGGGTCGGGAATGAATGG 60.153 63.158 0.00 0.00 0.00 3.16
5332 8217 0.535335 TCCGTGTGGGAGTAGCATTC 59.465 55.000 0.00 0.00 40.94 2.67
5347 8232 1.346395 TGGTGTTGCTTCATACTCCGT 59.654 47.619 0.00 0.00 32.07 4.69
5348 8233 2.093306 TGGTGTTGCTTCATACTCCG 57.907 50.000 0.00 0.00 32.07 4.63
5397 8285 6.929625 TGAAAAAGAAAAACCATGACAGTGA 58.070 32.000 0.00 0.00 0.00 3.41
5508 8396 7.481642 AGATCAAGCTCTATGAAAAAGCAATG 58.518 34.615 0.00 0.00 38.51 2.82
5517 8405 7.341030 TCCATTTCAAGATCAAGCTCTATGAA 58.659 34.615 0.00 0.00 0.00 2.57
5531 8419 7.562088 TGAATGATCCAATGATCCATTTCAAGA 59.438 33.333 0.46 0.00 45.74 3.02
5541 8429 8.387190 TGATTACACTGAATGATCCAATGATC 57.613 34.615 0.00 0.00 46.37 2.92
5546 8434 8.215736 AGATGATGATTACACTGAATGATCCAA 58.784 33.333 0.00 0.00 30.82 3.53
5558 8446 8.506437 TGAACTGAACAAAGATGATGATTACAC 58.494 33.333 0.00 0.00 0.00 2.90
5586 8474 3.244009 GCTGGATAGCTAGAACATGAGCA 60.244 47.826 0.00 0.00 46.57 4.26
5620 8508 6.455647 TGCGACAGAGGGAGTATATATTTTG 58.544 40.000 0.00 0.00 0.00 2.44
5622 8510 5.775701 ACTGCGACAGAGGGAGTATATATTT 59.224 40.000 12.77 0.00 34.08 1.40
5638 8526 3.990092 ACTCTTGAAATGTACTGCGACA 58.010 40.909 0.00 0.00 0.00 4.35
5715 9334 6.561737 TTAACACGAATTGTAGAAATGGCA 57.438 33.333 0.00 0.00 37.51 4.92
5717 9336 9.840427 AGAATTTAACACGAATTGTAGAAATGG 57.160 29.630 0.00 0.00 37.51 3.16
5727 9346 7.712797 AGTCACCAAAGAATTTAACACGAATT 58.287 30.769 0.00 0.00 35.03 2.17
5731 9350 6.262601 ACAAGTCACCAAAGAATTTAACACG 58.737 36.000 0.00 0.00 35.03 4.49
5777 9396 6.418819 GCCCAAATTGATTTTGTCATCGATAG 59.581 38.462 0.00 0.00 42.68 2.08
5794 9413 3.072184 TGCAGTGGTTAAATGCCCAAATT 59.928 39.130 0.00 0.00 39.22 1.82
5798 9417 1.935799 ATGCAGTGGTTAAATGCCCA 58.064 45.000 0.00 0.00 39.22 5.36
5833 9452 4.171878 TGTTGTCTGTTTATGTTGGGGA 57.828 40.909 0.00 0.00 0.00 4.81
5834 9453 4.340950 AGTTGTTGTCTGTTTATGTTGGGG 59.659 41.667 0.00 0.00 0.00 4.96
5835 9454 5.514274 AGTTGTTGTCTGTTTATGTTGGG 57.486 39.130 0.00 0.00 0.00 4.12
5853 9472 2.301346 ACAGAGCAGACCCAAAAGTTG 58.699 47.619 0.00 0.00 0.00 3.16
5906 9525 7.714377 TGAAAATATGTTTGGATGTTTGCTTGT 59.286 29.630 0.00 0.00 0.00 3.16
5962 9581 7.253883 GCTTGTATTTCAGAATATGCAAGTTGC 60.254 37.037 21.17 21.17 45.29 4.17
5969 9588 6.082338 CGATGGCTTGTATTTCAGAATATGC 58.918 40.000 0.00 0.00 30.84 3.14
5970 9589 7.172190 AGACGATGGCTTGTATTTCAGAATATG 59.828 37.037 0.00 0.00 30.84 1.78
5999 9618 9.190858 GTGCATTAAGATAAATGTGTCACAAAA 57.809 29.630 10.28 0.00 38.78 2.44
6032 9651 6.150140 GGTACAAACTTCTCATGATGCTTCTT 59.850 38.462 0.00 0.00 0.00 2.52
6034 9653 5.163713 GGGTACAAACTTCTCATGATGCTTC 60.164 44.000 0.00 0.00 0.00 3.86
6072 9691 6.316640 TGTTGAAGTAAAATTCTTCGGACACA 59.683 34.615 8.83 4.32 42.68 3.72
6077 9696 8.494236 CTTCTTGTTGAAGTAAAATTCTTCGG 57.506 34.615 0.00 0.00 45.26 4.30
6099 9718 2.796032 GCACAACAAGTCAAGCCACTTC 60.796 50.000 0.00 0.00 34.17 3.01


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.