Multiple sequence alignment - TraesCS7B01G292700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G292700 chr7B 100.000 8814 0 0 1 8814 529667945 529676758 0.000000e+00 16277.0
1 TraesCS7B01G292700 chr7A 93.957 4799 181 34 3438 8201 567376882 567381606 0.000000e+00 7155.0
2 TraesCS7B01G292700 chr7A 89.437 2168 177 23 5688 7821 567006851 567009000 0.000000e+00 2687.0
3 TraesCS7B01G292700 chr7A 92.836 1368 72 9 2002 3362 567375536 567376884 0.000000e+00 1960.0
4 TraesCS7B01G292700 chr7A 86.189 1745 151 45 3590 5310 567004946 567006624 0.000000e+00 1805.0
5 TraesCS7B01G292700 chr7A 91.925 805 47 11 1048 1838 567374698 567375498 0.000000e+00 1110.0
6 TraesCS7B01G292700 chr7A 86.871 1013 54 21 84 1051 567373687 567374665 0.000000e+00 1061.0
7 TraesCS7B01G292700 chr7A 86.328 1024 74 38 1864 2844 567003321 567004321 0.000000e+00 1055.0
8 TraesCS7B01G292700 chr7A 93.450 458 29 1 2853 3309 567004413 567004870 0.000000e+00 678.0
9 TraesCS7B01G292700 chr7A 90.947 475 24 5 8358 8813 567381604 567382078 9.720000e-174 621.0
10 TraesCS7B01G292700 chr7A 83.682 478 56 17 1386 1846 567002786 567003258 1.760000e-116 431.0
11 TraesCS7B01G292700 chr7A 84.273 337 37 10 1048 1373 567002257 567002588 1.850000e-81 315.0
12 TraesCS7B01G292700 chr7A 90.270 185 10 4 5358 5536 567006604 567006786 1.480000e-57 235.0
13 TraesCS7B01G292700 chr7D 93.951 4364 183 42 3900 8227 500890744 500895062 0.000000e+00 6521.0
14 TraesCS7B01G292700 chr7D 89.495 2199 170 32 5664 7821 500823975 500826153 0.000000e+00 2724.0
15 TraesCS7B01G292700 chr7D 92.774 1813 82 22 1048 2841 500887857 500889639 0.000000e+00 2577.0
16 TraesCS7B01G292700 chr7D 86.981 1759 131 41 3590 5310 500822058 500823756 0.000000e+00 1890.0
17 TraesCS7B01G292700 chr7D 85.967 1019 87 31 1864 2844 500820415 500821415 0.000000e+00 1038.0
18 TraesCS7B01G292700 chr7D 95.708 466 20 0 2854 3319 500889753 500890218 0.000000e+00 750.0
19 TraesCS7B01G292700 chr7D 89.799 598 40 5 8226 8813 500895135 500895721 0.000000e+00 747.0
20 TraesCS7B01G292700 chr7D 95.405 457 15 4 3438 3891 500890244 500890697 0.000000e+00 723.0
21 TraesCS7B01G292700 chr7D 92.779 457 32 1 2854 3309 500821526 500821982 0.000000e+00 660.0
22 TraesCS7B01G292700 chr7D 84.932 584 32 17 498 1051 500887267 500887824 2.800000e-149 540.0
23 TraesCS7B01G292700 chr7D 89.522 439 27 8 77 500 500886441 500886875 1.010000e-148 538.0
24 TraesCS7B01G292700 chr7D 86.316 475 49 10 1387 1847 500819881 500820353 3.670000e-138 503.0
25 TraesCS7B01G292700 chr7D 85.629 334 29 8 1048 1373 500819360 500819682 5.100000e-87 333.0
26 TraesCS7B01G292700 chr7D 90.270 185 10 4 5358 5536 500823736 500823918 1.480000e-57 235.0
27 TraesCS7B01G292700 chr7D 96.296 81 3 0 3361 3441 199127703 199127623 5.550000e-27 134.0
28 TraesCS7B01G292700 chr7D 96.296 81 3 0 3361 3441 199127624 199127704 5.550000e-27 134.0
29 TraesCS7B01G292700 chrUn 89.399 2198 173 34 5664 7821 86625770 86627947 0.000000e+00 2713.0
30 TraesCS7B01G292700 chrUn 86.193 1760 151 35 3590 5310 86623845 86625551 0.000000e+00 1820.0
31 TraesCS7B01G292700 chrUn 89.524 840 61 17 2014 2844 86622414 86623235 0.000000e+00 1038.0
32 TraesCS7B01G292700 chrUn 95.014 361 18 0 2949 3309 86623409 86623769 1.280000e-157 568.0
33 TraesCS7B01G292700 chrUn 87.097 465 45 10 1387 1838 86621927 86622389 6.100000e-141 512.0
34 TraesCS7B01G292700 chrUn 84.802 329 35 10 1048 1365 86621299 86621623 5.140000e-82 316.0
35 TraesCS7B01G292700 chrUn 90.811 185 9 4 5358 5536 86625531 86625713 3.180000e-59 241.0
36 TraesCS7B01G292700 chr3D 79.024 205 41 2 7341 7544 323333822 323334025 1.190000e-28 139.0
37 TraesCS7B01G292700 chr2B 93.478 92 6 0 3361 3452 675337154 675337245 4.290000e-28 137.0
38 TraesCS7B01G292700 chr2B 96.296 81 3 0 3361 3441 675337233 675337153 5.550000e-27 134.0
39 TraesCS7B01G292700 chr6B 95.294 85 2 1 3359 3443 561275681 561275763 5.550000e-27 134.0
40 TraesCS7B01G292700 chr6B 80.412 97 18 1 3438 3534 179625861 179625956 1.230000e-08 73.1
41 TraesCS7B01G292700 chr3B 81.481 162 30 0 7392 7553 395852531 395852370 5.550000e-27 134.0
42 TraesCS7B01G292700 chr3B 95.122 82 4 0 3360 3441 557093205 557093124 7.180000e-26 130.0
43 TraesCS7B01G292700 chr3B 80.667 150 21 6 3343 3491 775997243 775997101 9.360000e-20 110.0
44 TraesCS7B01G292700 chr3A 81.481 162 30 0 7392 7553 399573945 399573784 5.550000e-27 134.0
45 TraesCS7B01G292700 chr4B 90.625 96 4 2 3356 3446 342857164 342857069 1.200000e-23 122.0
46 TraesCS7B01G292700 chr4B 84.091 88 13 1 3451 3537 376157886 376157973 5.670000e-12 84.2
47 TraesCS7B01G292700 chr5B 89.796 98 4 3 3351 3443 142701506 142701410 4.320000e-23 121.0
48 TraesCS7B01G292700 chr5D 84.127 126 9 6 3323 3440 464414886 464415008 2.600000e-20 111.0
49 TraesCS7B01G292700 chr5D 88.889 63 4 3 3473 3534 386667782 386667722 3.410000e-09 75.0
50 TraesCS7B01G292700 chr4D 88.889 81 9 0 3446 3526 486932133 486932213 5.630000e-17 100.0
51 TraesCS7B01G292700 chr2A 90.411 73 7 0 3438 3510 236837403 236837331 7.280000e-16 97.1
52 TraesCS7B01G292700 chr2A 83.908 87 12 2 3438 3523 504339204 504339289 2.040000e-11 82.4
53 TraesCS7B01G292700 chr2D 85.057 87 11 2 3438 3523 372929774 372929689 4.380000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G292700 chr7B 529667945 529676758 8813 False 16277.000000 16277 100.000000 1 8814 1 chr7B.!!$F1 8813
1 TraesCS7B01G292700 chr7A 567373687 567382078 8391 False 2381.400000 7155 91.307200 84 8813 5 chr7A.!!$F2 8729
2 TraesCS7B01G292700 chr7A 567002257 567009000 6743 False 1029.428571 2687 87.661286 1048 7821 7 chr7A.!!$F1 6773
3 TraesCS7B01G292700 chr7D 500886441 500895721 9280 False 1770.857143 6521 91.727286 77 8813 7 chr7D.!!$F3 8736
4 TraesCS7B01G292700 chr7D 500819360 500826153 6793 False 1054.714286 2724 88.205286 1048 7821 7 chr7D.!!$F2 6773
5 TraesCS7B01G292700 chrUn 86621299 86627947 6648 False 1029.714286 2713 88.977143 1048 7821 7 chrUn.!!$F1 6773

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.179124 GAGCACCACGAGCCTTAGAG 60.179 60.000 0.00 0.00 0.00 2.43 F
1457 2293 0.322456 TCTTGTCAATCCAAGGCCCG 60.322 55.000 0.00 0.00 41.72 6.13 F
3210 4267 0.958382 TTGTGTATCAAGGGCCACGC 60.958 55.000 6.18 1.29 0.00 5.34 F
3887 4946 0.605319 CGGGCTTTTCAGGTACAGCA 60.605 55.000 0.00 0.00 33.64 4.41 F
4840 5997 0.537371 CCAGTTCCACCCTGACAACC 60.537 60.000 0.00 0.00 31.38 3.77 F
5787 6989 3.382832 AAGCCGGGAGTCCTGACG 61.383 66.667 20.38 9.45 36.20 4.35 F
6195 7406 0.445436 GAGATGCGCTTGTTGGACTG 59.555 55.000 9.73 0.00 0.00 3.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1726 2580 0.392729 CTGAAGGAGAAGGCAGGCAG 60.393 60.000 0.00 0.0 0.00 4.85 R
3424 4481 0.185416 GATCTACTCCCTCCGTCCCA 59.815 60.000 0.00 0.0 0.00 4.37 R
4477 5622 0.622136 ACAATCCTGCAGCCATCTGA 59.378 50.000 8.66 0.0 42.95 3.27 R
5787 6989 1.029947 CACTAACCCCCATCAACGCC 61.030 60.000 0.00 0.0 0.00 5.68 R
5791 6993 1.301623 CGCCACTAACCCCCATCAA 59.698 57.895 0.00 0.0 0.00 2.57 R
7765 9036 1.446272 GGAGAGACCAAAGGCGACG 60.446 63.158 0.00 0.0 38.79 5.12 R
8187 9464 2.100989 GTGGACATAGAAGAGGACCGT 58.899 52.381 0.00 0.0 0.00 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.257722 TCGAATAAATTCAAGAAAATGGGAGC 58.742 34.615 3.76 0.00 36.61 4.70
27 28 7.035004 CGAATAAATTCAAGAAAATGGGAGCA 58.965 34.615 3.76 0.00 36.61 4.26
28 29 7.009540 CGAATAAATTCAAGAAAATGGGAGCAC 59.990 37.037 3.76 0.00 36.61 4.40
29 30 4.541973 AATTCAAGAAAATGGGAGCACC 57.458 40.909 0.00 0.00 40.81 5.01
38 39 4.021925 GGGAGCACCACGAGCCTT 62.022 66.667 1.58 0.00 39.85 4.35
39 40 2.656069 GGGAGCACCACGAGCCTTA 61.656 63.158 1.58 0.00 39.85 2.69
40 41 1.153549 GGAGCACCACGAGCCTTAG 60.154 63.158 0.00 0.00 35.97 2.18
41 42 1.605058 GGAGCACCACGAGCCTTAGA 61.605 60.000 0.00 0.00 35.97 2.10
42 43 0.179124 GAGCACCACGAGCCTTAGAG 60.179 60.000 0.00 0.00 0.00 2.43
43 44 0.612174 AGCACCACGAGCCTTAGAGA 60.612 55.000 0.00 0.00 0.00 3.10
44 45 0.461961 GCACCACGAGCCTTAGAGAT 59.538 55.000 0.00 0.00 0.00 2.75
45 46 1.681793 GCACCACGAGCCTTAGAGATA 59.318 52.381 0.00 0.00 0.00 1.98
46 47 2.287909 GCACCACGAGCCTTAGAGATAG 60.288 54.545 0.00 0.00 0.00 2.08
47 48 3.215151 CACCACGAGCCTTAGAGATAGA 58.785 50.000 0.00 0.00 0.00 1.98
48 49 3.823873 CACCACGAGCCTTAGAGATAGAT 59.176 47.826 0.00 0.00 0.00 1.98
49 50 3.823873 ACCACGAGCCTTAGAGATAGATG 59.176 47.826 0.00 0.00 0.00 2.90
50 51 3.366883 CCACGAGCCTTAGAGATAGATGC 60.367 52.174 0.00 0.00 0.00 3.91
51 52 3.505680 CACGAGCCTTAGAGATAGATGCT 59.494 47.826 0.00 0.00 0.00 3.79
52 53 3.756434 ACGAGCCTTAGAGATAGATGCTC 59.244 47.826 0.00 0.00 40.15 4.26
53 54 4.009675 CGAGCCTTAGAGATAGATGCTCT 58.990 47.826 0.00 0.00 44.46 4.09
54 55 4.458989 CGAGCCTTAGAGATAGATGCTCTT 59.541 45.833 0.00 0.00 42.43 2.85
55 56 5.391950 CGAGCCTTAGAGATAGATGCTCTTC 60.392 48.000 0.00 0.00 42.43 2.87
56 57 4.772100 AGCCTTAGAGATAGATGCTCTTCC 59.228 45.833 0.00 0.00 42.43 3.46
57 58 4.380444 GCCTTAGAGATAGATGCTCTTCCG 60.380 50.000 0.00 0.00 42.43 4.30
58 59 5.007034 CCTTAGAGATAGATGCTCTTCCGA 58.993 45.833 0.00 0.00 42.43 4.55
59 60 5.652014 CCTTAGAGATAGATGCTCTTCCGAT 59.348 44.000 0.00 0.00 42.43 4.18
60 61 6.826231 CCTTAGAGATAGATGCTCTTCCGATA 59.174 42.308 0.00 0.00 42.43 2.92
61 62 7.012327 CCTTAGAGATAGATGCTCTTCCGATAG 59.988 44.444 0.00 0.00 42.43 2.08
62 63 6.061022 AGAGATAGATGCTCTTCCGATAGA 57.939 41.667 0.00 0.00 39.62 1.98
63 64 6.480763 AGAGATAGATGCTCTTCCGATAGAA 58.519 40.000 0.00 0.00 39.62 2.10
64 65 7.118723 AGAGATAGATGCTCTTCCGATAGAAT 58.881 38.462 0.00 0.00 39.62 2.40
65 66 8.271458 AGAGATAGATGCTCTTCCGATAGAATA 58.729 37.037 0.00 0.00 39.62 1.75
66 67 8.815565 AGATAGATGCTCTTCCGATAGAATAA 57.184 34.615 0.00 0.00 39.76 1.40
67 68 9.249053 AGATAGATGCTCTTCCGATAGAATAAA 57.751 33.333 0.00 0.00 39.76 1.40
68 69 9.296400 GATAGATGCTCTTCCGATAGAATAAAC 57.704 37.037 0.00 0.00 39.76 2.01
69 70 6.153067 AGATGCTCTTCCGATAGAATAAACG 58.847 40.000 0.00 0.00 39.76 3.60
70 71 5.509716 TGCTCTTCCGATAGAATAAACGA 57.490 39.130 0.00 0.00 39.76 3.85
71 72 5.520632 TGCTCTTCCGATAGAATAAACGAG 58.479 41.667 0.00 0.00 39.76 4.18
72 73 5.067413 TGCTCTTCCGATAGAATAAACGAGT 59.933 40.000 0.00 0.00 39.76 4.18
73 74 5.626132 GCTCTTCCGATAGAATAAACGAGTC 59.374 44.000 0.00 0.00 39.76 3.36
74 75 6.688637 TCTTCCGATAGAATAAACGAGTCA 57.311 37.500 0.00 0.00 39.76 3.41
75 76 6.493116 TCTTCCGATAGAATAAACGAGTCAC 58.507 40.000 0.00 0.00 39.76 3.67
76 77 4.840911 TCCGATAGAATAAACGAGTCACG 58.159 43.478 0.00 0.00 43.99 4.35
77 78 4.571984 TCCGATAGAATAAACGAGTCACGA 59.428 41.667 0.00 0.00 41.65 4.35
78 79 4.904724 CCGATAGAATAAACGAGTCACGAG 59.095 45.833 0.00 0.00 41.65 4.18
79 80 5.277202 CCGATAGAATAAACGAGTCACGAGA 60.277 44.000 0.00 0.00 41.65 4.04
80 81 6.364261 CGATAGAATAAACGAGTCACGAGAT 58.636 40.000 0.00 0.00 41.65 2.75
81 82 7.359849 CCGATAGAATAAACGAGTCACGAGATA 60.360 40.741 0.00 0.00 41.65 1.98
82 83 8.169910 CGATAGAATAAACGAGTCACGAGATAT 58.830 37.037 0.00 0.00 41.65 1.63
153 155 0.374758 TATCAGTCGGCGTCGTGTAC 59.625 55.000 10.18 0.00 37.69 2.90
162 164 2.802414 GTCGTGTACGCGGGTCAC 60.802 66.667 26.98 14.82 39.60 3.67
216 230 3.110358 TCATAACGGCTAAATCACGTCG 58.890 45.455 0.00 0.00 40.31 5.12
233 247 3.884091 ACGTCGCTATGGAAGAGTTATCT 59.116 43.478 0.00 0.00 37.39 1.98
236 250 3.005897 TCGCTATGGAAGAGTTATCTGGC 59.994 47.826 0.00 0.00 35.37 4.85
247 261 4.159693 AGAGTTATCTGGCACATCAACGTA 59.840 41.667 0.00 0.00 38.20 3.57
281 295 1.153706 GCAATGATGGCTTTGCGCT 60.154 52.632 9.73 0.00 42.70 5.92
284 298 0.383231 AATGATGGCTTTGCGCTAGC 59.617 50.000 21.76 21.76 45.41 3.42
330 344 1.007038 TCACGGTACAACGACCAGC 60.007 57.895 0.00 0.00 39.72 4.85
356 374 4.434593 CGTTTATTTTCCACGTAAGACCGG 60.435 45.833 0.00 0.00 43.62 5.28
357 375 1.445871 ATTTTCCACGTAAGACCGGC 58.554 50.000 0.00 0.00 43.62 6.13
421 439 2.950172 GAGCAGCCGCGAAAACGAA 61.950 57.895 8.23 0.00 45.49 3.85
422 440 2.499732 GCAGCCGCGAAAACGAAG 60.500 61.111 8.23 0.00 34.06 3.79
443 462 1.063183 AGGAAAGAGGACTTGCAGCT 58.937 50.000 0.00 0.00 36.39 4.24
444 463 1.163554 GGAAAGAGGACTTGCAGCTG 58.836 55.000 10.11 10.11 36.39 4.24
485 509 4.100344 GTCTCCTTCCCTGTTTCCTCTATC 59.900 50.000 0.00 0.00 0.00 2.08
486 510 4.016105 TCTCCTTCCCTGTTTCCTCTATCT 60.016 45.833 0.00 0.00 0.00 1.98
586 1008 1.358759 CACGGCCAAAGTGTGTTCC 59.641 57.895 2.24 0.00 35.08 3.62
600 1022 1.231958 TGTTCCACGCATTCCGGTTC 61.232 55.000 0.00 0.00 42.52 3.62
601 1023 1.071642 TTCCACGCATTCCGGTTCA 59.928 52.632 0.00 0.00 42.52 3.18
602 1024 0.535328 TTCCACGCATTCCGGTTCAA 60.535 50.000 0.00 0.00 42.52 2.69
603 1025 0.953471 TCCACGCATTCCGGTTCAAG 60.953 55.000 0.00 0.00 42.52 3.02
617 1039 1.064060 GTTCAAGTTCAACTGCGTGCT 59.936 47.619 0.00 0.00 0.00 4.40
619 1041 0.940126 CAAGTTCAACTGCGTGCTCT 59.060 50.000 0.00 0.00 0.00 4.09
621 1043 1.082496 GTTCAACTGCGTGCTCTGC 60.082 57.895 0.00 0.00 0.00 4.26
722 1156 1.301558 CCAGAGCGCAGGATCCATC 60.302 63.158 15.82 3.72 0.00 3.51
739 1173 0.920763 ATCCATTGCACCCTCCTCCA 60.921 55.000 0.00 0.00 0.00 3.86
740 1174 1.379044 CCATTGCACCCTCCTCCAC 60.379 63.158 0.00 0.00 0.00 4.02
743 1177 2.142292 ATTGCACCCTCCTCCACCAC 62.142 60.000 0.00 0.00 0.00 4.16
791 1225 1.228862 AATTGAAACCCCCGCTGCT 60.229 52.632 0.00 0.00 0.00 4.24
795 1229 4.603535 AAACCCCCGCTGCTGCTT 62.604 61.111 14.03 0.00 36.97 3.91
881 1322 2.863153 CGAACCAAGAAGCTGGCG 59.137 61.111 0.00 0.00 40.45 5.69
949 1395 2.726691 CGTCGAACGGAGCGCATTT 61.727 57.895 11.47 0.00 38.08 2.32
952 1398 0.669318 TCGAACGGAGCGCATTTTCT 60.669 50.000 11.47 0.00 0.00 2.52
970 1416 1.347707 TCTTGCACGAACCTTGATCCT 59.652 47.619 0.00 0.00 0.00 3.24
996 1447 1.152271 ACTTCTTTCTGGGAGGAGGGA 59.848 52.381 0.00 0.00 0.00 4.20
1158 1660 2.588877 CGCAAGGGCATAGTCGGG 60.589 66.667 0.00 0.00 41.24 5.14
1160 1662 2.742116 GCAAGGGCATAGTCGGGGA 61.742 63.158 0.00 0.00 40.72 4.81
1161 1663 2.056906 GCAAGGGCATAGTCGGGGAT 62.057 60.000 0.00 0.00 40.72 3.85
1168 1679 1.456892 ATAGTCGGGGATGACGGCA 60.457 57.895 0.00 0.00 43.70 5.69
1280 1791 3.043713 CCACGAGCGCTTCTTGCA 61.044 61.111 13.26 0.00 43.06 4.08
1307 1818 1.751351 CAAGCAGAGGATCGACAGGTA 59.249 52.381 0.00 0.00 42.67 3.08
1314 1825 0.955905 GGATCGACAGGTAGCTCTCC 59.044 60.000 0.00 0.00 0.00 3.71
1319 1830 4.371699 CAGGTAGCTCTCCCTGCT 57.628 61.111 12.51 0.00 41.65 4.24
1321 1832 0.685785 CAGGTAGCTCTCCCTGCTCA 60.686 60.000 12.51 0.00 41.65 4.26
1363 1904 5.494724 TCTGCTTTGCATATCTCTTTCTGT 58.505 37.500 0.00 0.00 38.13 3.41
1365 1906 6.093219 TCTGCTTTGCATATCTCTTTCTGTTC 59.907 38.462 0.00 0.00 38.13 3.18
1368 1909 6.093219 GCTTTGCATATCTCTTTCTGTTCTCA 59.907 38.462 0.00 0.00 0.00 3.27
1369 1910 6.974932 TTGCATATCTCTTTCTGTTCTCAC 57.025 37.500 0.00 0.00 0.00 3.51
1371 1912 5.188555 TGCATATCTCTTTCTGTTCTCACCT 59.811 40.000 0.00 0.00 0.00 4.00
1372 1913 6.381133 TGCATATCTCTTTCTGTTCTCACCTA 59.619 38.462 0.00 0.00 0.00 3.08
1375 1916 5.968528 TCTCTTTCTGTTCTCACCTACTC 57.031 43.478 0.00 0.00 0.00 2.59
1376 1917 4.767928 TCTCTTTCTGTTCTCACCTACTCC 59.232 45.833 0.00 0.00 0.00 3.85
1457 2293 0.322456 TCTTGTCAATCCAAGGCCCG 60.322 55.000 0.00 0.00 41.72 6.13
1488 2334 9.868277 CCATTATAGTTGGAAATTAAGCACAAA 57.132 29.630 0.00 0.00 36.26 2.83
1671 2523 2.289072 TGACAAGAGTGCTGAAGCTACC 60.289 50.000 3.61 0.00 42.66 3.18
1726 2580 4.037923 TCAAGCCTGACCATTTTCTGTTTC 59.962 41.667 0.00 0.00 0.00 2.78
1775 2629 6.725246 AGCCAATTTTCTTCGTATAATTCCG 58.275 36.000 0.00 0.00 0.00 4.30
1939 2838 7.547227 ACCATATGTTTCAGGTGAAAAATAGC 58.453 34.615 16.72 3.34 43.53 2.97
1943 2842 6.072112 TGTTTCAGGTGAAAAATAGCAGTC 57.928 37.500 6.72 0.00 44.58 3.51
1949 2848 6.426937 TCAGGTGAAAAATAGCAGTCTGTTAC 59.573 38.462 0.93 0.00 0.00 2.50
1962 2861 4.867047 CAGTCTGTTACATGATCACCACTC 59.133 45.833 0.00 0.00 0.00 3.51
2022 2925 1.269723 AGTCTTGCATCACTCGTCGAA 59.730 47.619 0.00 0.00 0.00 3.71
2038 2941 2.676342 GTCGAATTCCCGTATTTGTGCT 59.324 45.455 0.00 0.00 0.00 4.40
2090 2993 2.549064 TGGTCTGATGTCTGGTGTTG 57.451 50.000 0.00 0.00 0.00 3.33
2378 3290 3.723681 ACATATCCCAACATGACCTCCAT 59.276 43.478 0.00 0.00 35.44 3.41
2457 3369 2.031857 GGAAGTAGATACGGTGAGCTCG 60.032 54.545 9.64 0.00 0.00 5.03
2524 3437 4.292186 ACTGTGTGCTAATTCCTGATGT 57.708 40.909 0.00 0.00 0.00 3.06
2533 3446 4.816925 GCTAATTCCTGATGTACTTGTCCC 59.183 45.833 0.00 0.00 0.00 4.46
2570 3483 3.118075 AGCTATCAAGAAGGGAGAAAGCC 60.118 47.826 0.00 0.00 0.00 4.35
2809 3749 1.018840 TGAGAGGAATCTCAGGGGGA 58.981 55.000 3.88 0.00 41.34 4.81
2910 3967 4.832823 TGTACACCATACGATCTCCATGAT 59.167 41.667 0.00 0.00 38.27 2.45
3210 4267 0.958382 TTGTGTATCAAGGGCCACGC 60.958 55.000 6.18 1.29 0.00 5.34
3270 4327 4.692475 CCCGACCGGAAAGGCGTT 62.692 66.667 9.46 0.00 46.52 4.84
3296 4353 5.007724 CCGACTTTTTGCAAGAAGTAAGTCT 59.992 40.000 29.20 10.88 39.34 3.24
3300 4357 4.818534 TTTGCAAGAAGTAAGTCTGCTG 57.181 40.909 0.00 0.00 31.22 4.41
3370 4427 9.706691 ATGTATATTAATGTTGTACTTCCTCCG 57.293 33.333 0.00 0.00 0.00 4.63
3371 4428 8.698210 TGTATATTAATGTTGTACTTCCTCCGT 58.302 33.333 0.00 0.00 0.00 4.69
3372 4429 9.189723 GTATATTAATGTTGTACTTCCTCCGTC 57.810 37.037 0.00 0.00 0.00 4.79
3373 4430 3.329929 AATGTTGTACTTCCTCCGTCC 57.670 47.619 0.00 0.00 0.00 4.79
3374 4431 0.971386 TGTTGTACTTCCTCCGTCCC 59.029 55.000 0.00 0.00 0.00 4.46
3375 4432 0.971386 GTTGTACTTCCTCCGTCCCA 59.029 55.000 0.00 0.00 0.00 4.37
3376 4433 1.553704 GTTGTACTTCCTCCGTCCCAT 59.446 52.381 0.00 0.00 0.00 4.00
3377 4434 2.762327 GTTGTACTTCCTCCGTCCCATA 59.238 50.000 0.00 0.00 0.00 2.74
3378 4435 3.104519 TGTACTTCCTCCGTCCCATAA 57.895 47.619 0.00 0.00 0.00 1.90
3379 4436 3.649843 TGTACTTCCTCCGTCCCATAAT 58.350 45.455 0.00 0.00 0.00 1.28
3380 4437 4.806892 TGTACTTCCTCCGTCCCATAATA 58.193 43.478 0.00 0.00 0.00 0.98
3381 4438 5.399991 TGTACTTCCTCCGTCCCATAATAT 58.600 41.667 0.00 0.00 0.00 1.28
3382 4439 6.554784 TGTACTTCCTCCGTCCCATAATATA 58.445 40.000 0.00 0.00 0.00 0.86
3383 4440 7.011994 TGTACTTCCTCCGTCCCATAATATAA 58.988 38.462 0.00 0.00 0.00 0.98
3384 4441 6.607004 ACTTCCTCCGTCCCATAATATAAG 57.393 41.667 0.00 0.00 0.00 1.73
3385 4442 6.320518 ACTTCCTCCGTCCCATAATATAAGA 58.679 40.000 0.00 0.00 0.00 2.10
3386 4443 6.785963 ACTTCCTCCGTCCCATAATATAAGAA 59.214 38.462 0.00 0.00 0.00 2.52
3387 4444 6.600882 TCCTCCGTCCCATAATATAAGAAC 57.399 41.667 0.00 0.00 0.00 3.01
3388 4445 5.184479 TCCTCCGTCCCATAATATAAGAACG 59.816 44.000 0.00 0.00 0.00 3.95
3389 4446 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3390 4447 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
3391 4448 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3392 4449 6.702723 TCCGTCCCATAATATAAGAACGTTTG 59.297 38.462 0.46 0.00 0.00 2.93
3393 4450 6.480981 CCGTCCCATAATATAAGAACGTTTGT 59.519 38.462 0.46 0.00 0.00 2.83
3394 4451 7.342194 CGTCCCATAATATAAGAACGTTTGTG 58.658 38.462 0.46 0.00 0.00 3.33
3395 4452 7.223193 CGTCCCATAATATAAGAACGTTTGTGA 59.777 37.037 0.46 0.00 0.00 3.58
3396 4453 9.052759 GTCCCATAATATAAGAACGTTTGTGAT 57.947 33.333 0.46 0.00 0.00 3.06
3405 4462 8.684973 ATAAGAACGTTTGTGATACTAGTGTC 57.315 34.615 12.39 12.39 0.00 3.67
3406 4463 6.080648 AGAACGTTTGTGATACTAGTGTCA 57.919 37.500 17.43 17.43 0.00 3.58
3407 4464 6.509656 AGAACGTTTGTGATACTAGTGTCAA 58.490 36.000 22.17 11.06 32.56 3.18
3408 4465 6.982141 AGAACGTTTGTGATACTAGTGTCAAA 59.018 34.615 22.17 15.50 32.56 2.69
3409 4466 7.493320 AGAACGTTTGTGATACTAGTGTCAAAA 59.507 33.333 22.17 20.21 32.56 2.44
3410 4467 7.542534 ACGTTTGTGATACTAGTGTCAAAAA 57.457 32.000 25.77 25.77 36.15 1.94
3411 4468 7.404203 ACGTTTGTGATACTAGTGTCAAAAAC 58.596 34.615 35.71 35.71 46.48 2.43
3412 4469 7.816490 GTTTGTGATACTAGTGTCAAAAACG 57.184 36.000 34.07 0.00 43.72 3.60
3413 4470 7.404203 GTTTGTGATACTAGTGTCAAAAACGT 58.596 34.615 34.07 1.23 43.72 3.99
3414 4471 7.542534 TTGTGATACTAGTGTCAAAAACGTT 57.457 32.000 22.17 0.00 32.56 3.99
3415 4472 7.169035 TGTGATACTAGTGTCAAAAACGTTC 57.831 36.000 22.17 9.23 32.56 3.95
3416 4473 6.982141 TGTGATACTAGTGTCAAAAACGTTCT 59.018 34.615 22.17 0.00 32.56 3.01
3417 4474 7.493320 TGTGATACTAGTGTCAAAAACGTTCTT 59.507 33.333 22.17 0.00 32.56 2.52
3418 4475 8.971321 GTGATACTAGTGTCAAAAACGTTCTTA 58.029 33.333 22.17 0.00 32.56 2.10
3419 4476 9.701098 TGATACTAGTGTCAAAAACGTTCTTAT 57.299 29.630 18.84 0.00 0.00 1.73
3427 4484 9.498307 GTGTCAAAAACGTTCTTATATTATGGG 57.502 33.333 0.00 0.00 0.00 4.00
3428 4485 9.451002 TGTCAAAAACGTTCTTATATTATGGGA 57.549 29.630 0.00 0.00 0.00 4.37
3429 4486 9.712359 GTCAAAAACGTTCTTATATTATGGGAC 57.288 33.333 0.00 0.00 0.00 4.46
3430 4487 8.605746 TCAAAAACGTTCTTATATTATGGGACG 58.394 33.333 0.00 9.33 0.00 4.79
3431 4488 7.486802 AAAACGTTCTTATATTATGGGACGG 57.513 36.000 0.00 1.76 0.00 4.79
3432 4489 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
3433 4490 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3434 4491 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
3435 4492 5.623824 CGTTCTTATATTATGGGACGGAGGG 60.624 48.000 0.00 0.00 0.00 4.30
3436 4493 5.279562 TCTTATATTATGGGACGGAGGGA 57.720 43.478 0.00 0.00 0.00 4.20
3471 4528 7.368833 ACCATATTTTTCTATAGACTCGGTCG 58.631 38.462 0.67 0.00 37.67 4.79
3482 4540 9.330063 TCTATAGACTCGGTCGAACTTAAATAA 57.670 33.333 0.00 0.00 37.67 1.40
3643 4702 3.329520 ACAATACTGGGCAAGGAGTAACA 59.670 43.478 0.00 0.00 0.00 2.41
3883 4942 1.450025 CTTCCGGGCTTTTCAGGTAC 58.550 55.000 0.00 0.00 0.00 3.34
3887 4946 0.605319 CGGGCTTTTCAGGTACAGCA 60.605 55.000 0.00 0.00 33.64 4.41
3892 4953 4.503123 GGGCTTTTCAGGTACAGCAATTTT 60.503 41.667 0.00 0.00 33.64 1.82
3932 5044 6.988580 TCAGTTCAGGCATATCTTCATACTTG 59.011 38.462 0.00 0.00 0.00 3.16
3988 5112 2.103771 GGTATCCATCTGCAGCTTCTGA 59.896 50.000 9.47 1.22 32.44 3.27
3990 5114 4.020751 GGTATCCATCTGCAGCTTCTGATA 60.021 45.833 9.47 7.83 32.44 2.15
4068 5192 2.747396 ACGACGGCATTGTTTACCTA 57.253 45.000 0.00 0.00 0.00 3.08
4377 5522 5.928976 TCTGGAAGAAGAACATGACAAGAA 58.071 37.500 0.00 0.00 42.31 2.52
4417 5562 7.440255 ACAAGTAGCACGTACCAATATTAATCC 59.560 37.037 0.00 0.00 31.06 3.01
4436 5581 4.370364 TCCTCTTGTTGTTTTCTTGCAC 57.630 40.909 0.00 0.00 0.00 4.57
4477 5622 3.119029 ACTTGCTGCTGTTGTTTGTCAAT 60.119 39.130 0.00 0.00 38.38 2.57
4555 5700 1.130561 GCAAATACACTGGCGTCCTTC 59.869 52.381 0.00 0.00 0.00 3.46
4674 5820 7.452880 TGAAATGTAAATTTCAGAGACAGGG 57.547 36.000 15.76 0.00 43.29 4.45
4690 5846 7.121168 CAGAGACAGGGTTTTCATATTTGCTTA 59.879 37.037 0.00 0.00 0.00 3.09
4824 5981 3.126858 CGGGTATGTCATGTTGTTTCCAG 59.873 47.826 0.00 0.00 0.00 3.86
4832 5989 1.770294 TGTTGTTTCCAGTTCCACCC 58.230 50.000 0.00 0.00 0.00 4.61
4840 5997 0.537371 CCAGTTCCACCCTGACAACC 60.537 60.000 0.00 0.00 31.38 3.77
4850 6007 4.526262 CCACCCTGACAACCAAAATATTGA 59.474 41.667 0.00 0.00 38.94 2.57
4851 6008 5.469479 CACCCTGACAACCAAAATATTGAC 58.531 41.667 0.00 0.00 38.94 3.18
4901 6058 5.853282 CAGTTCTGATCGTCAAAACCATTTC 59.147 40.000 0.00 0.00 0.00 2.17
5073 6234 6.732531 AGCTACCTTAAACGTAATCCAAAC 57.267 37.500 0.00 0.00 0.00 2.93
5084 6245 8.631480 AAACGTAATCCAAACCTTCTAGAATT 57.369 30.769 5.44 0.00 0.00 2.17
5573 6745 6.423182 CCAACTCCCTTCAATGGTTCTAATA 58.577 40.000 0.00 0.00 0.00 0.98
5574 6746 6.889722 CCAACTCCCTTCAATGGTTCTAATAA 59.110 38.462 0.00 0.00 0.00 1.40
5576 6748 6.113411 ACTCCCTTCAATGGTTCTAATAACG 58.887 40.000 0.00 0.00 0.00 3.18
5577 6749 5.433526 TCCCTTCAATGGTTCTAATAACGG 58.566 41.667 0.00 0.00 0.00 4.44
5602 6774 6.936900 GCCCTATCATTAGAACTTAATCTGCA 59.063 38.462 0.00 0.00 0.00 4.41
5611 6783 8.621532 TTAGAACTTAATCTGCACACTGAAAT 57.378 30.769 0.00 0.00 0.00 2.17
5613 6785 8.621532 AGAACTTAATCTGCACACTGAAATTA 57.378 30.769 0.00 0.00 0.00 1.40
5787 6989 3.382832 AAGCCGGGAGTCCTGACG 61.383 66.667 20.38 9.45 36.20 4.35
5802 7004 3.912745 GACGGCGTTGATGGGGGTT 62.913 63.158 16.19 0.00 0.00 4.11
5805 7007 1.301954 GGCGTTGATGGGGGTTAGT 59.698 57.895 0.00 0.00 0.00 2.24
6055 7257 6.875076 AGAAAGGTATGTATATATGCGTCCC 58.125 40.000 0.00 0.00 0.00 4.46
6177 7388 5.567623 GCTGGTAGAACTGAATTCACTGAGA 60.568 44.000 3.38 0.00 40.09 3.27
6195 7406 0.445436 GAGATGCGCTTGTTGGACTG 59.555 55.000 9.73 0.00 0.00 3.51
6527 7750 3.856206 AGAGAGGAGGGGAGGAGATATAC 59.144 52.174 0.00 0.00 0.00 1.47
6623 7874 8.458573 TTCAAGTTCTTTTTAGGTCTTGCATA 57.541 30.769 0.00 0.00 34.30 3.14
6716 7967 2.203015 CCAGGGTACAATCCGGCG 60.203 66.667 0.00 0.00 0.00 6.46
6816 8070 5.542635 TCAGACCTGTACCAGTAAGTCATTT 59.457 40.000 0.00 0.00 0.00 2.32
6817 8071 5.639506 CAGACCTGTACCAGTAAGTCATTTG 59.360 44.000 0.00 0.00 0.00 2.32
6822 8076 7.994334 ACCTGTACCAGTAAGTCATTTGTTTTA 59.006 33.333 0.00 0.00 0.00 1.52
6862 8116 7.444792 GGATTGATCAATAGAGATATGATGGGC 59.555 40.741 20.75 2.90 34.10 5.36
6864 8118 6.885922 TGATCAATAGAGATATGATGGGCTG 58.114 40.000 0.00 0.00 34.10 4.85
6865 8119 6.670902 TGATCAATAGAGATATGATGGGCTGA 59.329 38.462 0.00 0.00 34.10 4.26
6879 8149 7.658525 TGATGGGCTGAACAAACAATATATT 57.341 32.000 0.00 0.00 0.00 1.28
6964 8235 2.969262 CTCCAAGGATCTCTACTTCCCC 59.031 54.545 0.00 0.00 32.05 4.81
7354 8625 2.182537 GCGTACGGGGTGATCGTT 59.817 61.111 18.39 0.00 41.38 3.85
7384 8655 2.358737 GGCTTCCAGTGGGACGTG 60.359 66.667 9.92 0.00 44.89 4.49
7644 8915 1.273606 CTCACAGTTCGGTGACCTCAT 59.726 52.381 0.00 0.00 42.56 2.90
7708 8979 3.007940 TCAAGAGCTTCTTCGGATTCCAA 59.992 43.478 3.09 0.00 33.78 3.53
7753 9024 2.047560 GTTACTGCCGGGTTCGCT 60.048 61.111 2.18 0.00 34.56 4.93
7765 9036 2.357034 TTCGCTGTCCTGTTCGCC 60.357 61.111 0.00 0.00 0.00 5.54
7823 9094 4.472470 TCCAGAGAAGGTGATTCATCATGT 59.528 41.667 0.00 0.00 40.67 3.21
7904 9175 4.024387 CCGCATGTGTTTGTAGTTTGTACT 60.024 41.667 5.38 0.00 38.44 2.73
7905 9176 5.177881 CCGCATGTGTTTGTAGTTTGTACTA 59.822 40.000 5.38 0.00 35.78 1.82
7906 9177 6.296605 CGCATGTGTTTGTAGTTTGTACTAG 58.703 40.000 0.00 0.00 37.53 2.57
7999 9274 6.410243 TTTTTCCCTTAGTTTTGTTTTGCG 57.590 33.333 0.00 0.00 0.00 4.85
8000 9275 3.086818 TCCCTTAGTTTTGTTTTGCGC 57.913 42.857 0.00 0.00 0.00 6.09
8001 9276 2.691011 TCCCTTAGTTTTGTTTTGCGCT 59.309 40.909 9.73 0.00 0.00 5.92
8002 9277 3.131400 TCCCTTAGTTTTGTTTTGCGCTT 59.869 39.130 9.73 0.00 0.00 4.68
8003 9278 4.338682 TCCCTTAGTTTTGTTTTGCGCTTA 59.661 37.500 9.73 0.00 0.00 3.09
8052 9327 6.696441 TGAATACATGAACATTGCATAGCA 57.304 33.333 0.00 0.00 36.47 3.49
8053 9328 7.718525 ATGAATACATGAACATTGCATAGCAA 58.281 30.769 6.90 6.90 42.93 3.91
8054 9329 8.364894 ATGAATACATGAACATTGCATAGCAAT 58.635 29.630 11.15 11.15 45.82 3.56
8067 9342 7.461182 TTGCATAGCAATGGTTTACTTACTT 57.539 32.000 0.00 0.00 43.99 2.24
8068 9343 7.461182 TGCATAGCAATGGTTTACTTACTTT 57.539 32.000 0.00 0.00 34.76 2.66
8069 9344 7.891561 TGCATAGCAATGGTTTACTTACTTTT 58.108 30.769 0.00 0.00 34.76 2.27
8070 9345 8.026607 TGCATAGCAATGGTTTACTTACTTTTC 58.973 33.333 0.00 0.00 34.76 2.29
8071 9346 7.218204 GCATAGCAATGGTTTACTTACTTTTCG 59.782 37.037 0.00 0.00 33.38 3.46
8072 9347 6.870971 AGCAATGGTTTACTTACTTTTCGA 57.129 33.333 0.00 0.00 0.00 3.71
8073 9348 7.266922 AGCAATGGTTTACTTACTTTTCGAA 57.733 32.000 0.00 0.00 0.00 3.71
8074 9349 7.708998 AGCAATGGTTTACTTACTTTTCGAAA 58.291 30.769 6.47 6.47 0.00 3.46
8075 9350 8.192110 AGCAATGGTTTACTTACTTTTCGAAAA 58.808 29.630 21.35 21.35 0.00 2.29
8103 9378 7.648142 CAATGGTTTACTCAGTAGCAAGAAAA 58.352 34.615 0.00 0.00 0.00 2.29
8162 9439 5.491070 TGACTGAATTCGATGAACCAGAAT 58.509 37.500 13.99 0.00 36.29 2.40
8202 9479 5.419542 TCATTTTCACGGTCCTCTTCTATG 58.580 41.667 0.00 0.00 0.00 2.23
8207 9484 2.100989 ACGGTCCTCTTCTATGTCCAC 58.899 52.381 0.00 0.00 0.00 4.02
8211 9488 3.108376 GTCCTCTTCTATGTCCACCCTT 58.892 50.000 0.00 0.00 0.00 3.95
8223 9500 0.396811 CCACCCTTTCCGTTGAGAGT 59.603 55.000 0.00 0.00 0.00 3.24
8258 9609 8.021973 GGTCATGTACATAATAGAACTAGTCCG 58.978 40.741 8.32 0.00 0.00 4.79
8269 9620 1.269958 ACTAGTCCGGGGTTTACCAC 58.730 55.000 0.00 0.00 42.91 4.16
8274 9625 2.225596 CCGGGGTTTACCACAGGGA 61.226 63.158 1.53 0.00 40.22 4.20
8277 9628 0.683179 GGGGTTTACCACAGGGATGC 60.683 60.000 0.69 0.00 42.91 3.91
8302 9653 3.411517 CGGAGCCAGGATTGGGGT 61.412 66.667 0.00 0.00 45.16 4.95
8326 9677 0.969149 CTGGGGCCAAACTTTTCTCC 59.031 55.000 4.39 0.00 0.00 3.71
8332 9683 0.237498 CCAAACTTTTCTCCGGCGAC 59.763 55.000 9.30 0.00 0.00 5.19
8337 9688 1.369091 CTTTTCTCCGGCGACATGGG 61.369 60.000 9.30 0.00 0.00 4.00
8346 9697 1.401018 CGGCGACATGGGAAAACTTTC 60.401 52.381 0.00 0.00 36.46 2.62
8373 9724 7.226128 GCGCCTATAACTACTGAAAAATTACCT 59.774 37.037 0.00 0.00 0.00 3.08
8405 9756 5.614308 TCATGAAAATACTCCATGCGAGAT 58.386 37.500 15.51 4.96 41.63 2.75
8424 9775 6.246449 CGAGATCACACAAAATAAAGCTCAG 58.754 40.000 0.00 0.00 0.00 3.35
8502 9857 5.040635 GCCGAAAATAACAATACATGGGTG 58.959 41.667 0.00 0.00 0.00 4.61
8570 9931 0.453282 CGCAGTTGTTTGCCGATGAG 60.453 55.000 0.00 0.00 41.01 2.90
8595 9957 4.457834 AAGACCCTTCATCGTCTACTTG 57.542 45.455 0.00 0.00 38.39 3.16
8666 10028 6.378582 ACACACGGTACATTTCAATTCAATC 58.621 36.000 0.00 0.00 0.00 2.67
8669 10031 6.655003 ACACGGTACATTTCAATTCAATCTCT 59.345 34.615 0.00 0.00 0.00 3.10
8672 10034 7.822334 ACGGTACATTTCAATTCAATCTCTGTA 59.178 33.333 0.00 0.00 0.00 2.74
8734 10106 1.669115 AGCAACAGCAGCACTACGG 60.669 57.895 0.00 0.00 0.00 4.02
8813 10185 3.692406 GGTGGAACGGCGAGGAGT 61.692 66.667 16.62 0.00 38.12 3.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.759433 GCTCCCATTTTCTTGAATTTATTCGAA 59.241 33.333 0.00 0.00 39.62 3.71
3 4 7.278646 GGTGCTCCCATTTTCTTGAATTTATTC 59.721 37.037 0.00 0.00 37.31 1.75
6 7 5.541868 TGGTGCTCCCATTTTCTTGAATTTA 59.458 36.000 1.59 0.00 38.72 1.40
7 8 4.347583 TGGTGCTCCCATTTTCTTGAATTT 59.652 37.500 1.59 0.00 38.72 1.82
8 9 3.903090 TGGTGCTCCCATTTTCTTGAATT 59.097 39.130 1.59 0.00 38.72 2.17
9 10 3.509442 TGGTGCTCCCATTTTCTTGAAT 58.491 40.909 1.59 0.00 38.72 2.57
10 11 2.956132 TGGTGCTCCCATTTTCTTGAA 58.044 42.857 1.59 0.00 38.72 2.69
11 12 2.673775 TGGTGCTCCCATTTTCTTGA 57.326 45.000 1.59 0.00 38.72 3.02
21 22 2.579684 CTAAGGCTCGTGGTGCTCCC 62.580 65.000 1.59 0.00 0.00 4.30
22 23 1.153549 CTAAGGCTCGTGGTGCTCC 60.154 63.158 0.00 0.00 0.00 4.70
23 24 0.179124 CTCTAAGGCTCGTGGTGCTC 60.179 60.000 0.00 0.00 0.00 4.26
24 25 0.612174 TCTCTAAGGCTCGTGGTGCT 60.612 55.000 0.00 0.00 0.00 4.40
25 26 0.461961 ATCTCTAAGGCTCGTGGTGC 59.538 55.000 0.00 0.00 0.00 5.01
26 27 3.215151 TCTATCTCTAAGGCTCGTGGTG 58.785 50.000 0.00 0.00 0.00 4.17
27 28 3.579534 TCTATCTCTAAGGCTCGTGGT 57.420 47.619 0.00 0.00 0.00 4.16
28 29 3.366883 GCATCTATCTCTAAGGCTCGTGG 60.367 52.174 0.00 0.00 0.00 4.94
29 30 3.505680 AGCATCTATCTCTAAGGCTCGTG 59.494 47.826 0.00 0.00 0.00 4.35
30 31 3.756434 GAGCATCTATCTCTAAGGCTCGT 59.244 47.826 0.00 0.00 37.20 4.18
31 32 4.355543 GAGCATCTATCTCTAAGGCTCG 57.644 50.000 0.00 0.00 37.20 5.03
50 51 8.451511 CGTGACTCGTTTATTCTATCGGAAGAG 61.452 44.444 0.00 0.00 38.03 2.85
51 52 6.728646 CGTGACTCGTTTATTCTATCGGAAGA 60.729 42.308 0.00 0.00 38.66 2.87
52 53 5.395778 CGTGACTCGTTTATTCTATCGGAAG 59.604 44.000 0.00 0.00 34.56 3.46
53 54 5.065090 TCGTGACTCGTTTATTCTATCGGAA 59.935 40.000 0.00 0.00 40.80 4.30
54 55 4.571984 TCGTGACTCGTTTATTCTATCGGA 59.428 41.667 0.00 0.00 40.80 4.55
55 56 4.840911 TCGTGACTCGTTTATTCTATCGG 58.159 43.478 0.00 0.00 40.80 4.18
56 57 5.735324 TCTCGTGACTCGTTTATTCTATCG 58.265 41.667 0.00 0.00 40.80 2.92
60 61 7.751348 GCATATATCTCGTGACTCGTTTATTCT 59.249 37.037 0.00 0.00 40.80 2.40
61 62 7.751348 AGCATATATCTCGTGACTCGTTTATTC 59.249 37.037 0.00 0.00 40.80 1.75
62 63 7.594714 AGCATATATCTCGTGACTCGTTTATT 58.405 34.615 0.00 0.00 40.80 1.40
63 64 7.119992 AGAGCATATATCTCGTGACTCGTTTAT 59.880 37.037 0.00 0.00 40.80 1.40
64 65 6.427242 AGAGCATATATCTCGTGACTCGTTTA 59.573 38.462 0.00 0.00 40.80 2.01
65 66 5.239744 AGAGCATATATCTCGTGACTCGTTT 59.760 40.000 0.00 0.00 40.80 3.60
66 67 4.757657 AGAGCATATATCTCGTGACTCGTT 59.242 41.667 0.00 0.00 40.80 3.85
67 68 4.320023 AGAGCATATATCTCGTGACTCGT 58.680 43.478 0.00 0.00 40.80 4.18
68 69 4.937696 AGAGCATATATCTCGTGACTCG 57.062 45.455 0.00 0.00 41.41 4.18
69 70 5.636837 GGAAGAGCATATATCTCGTGACTC 58.363 45.833 0.00 0.00 35.79 3.36
70 71 4.155099 CGGAAGAGCATATATCTCGTGACT 59.845 45.833 0.00 0.00 35.79 3.41
71 72 4.154375 TCGGAAGAGCATATATCTCGTGAC 59.846 45.833 0.00 0.00 35.79 3.67
72 73 4.324267 TCGGAAGAGCATATATCTCGTGA 58.676 43.478 5.73 0.00 35.79 4.35
73 74 4.686839 TCGGAAGAGCATATATCTCGTG 57.313 45.455 5.73 0.00 35.79 4.35
162 164 2.591429 TGCACTTGGACACAGCCG 60.591 61.111 0.00 0.00 0.00 5.52
216 230 4.061596 GTGCCAGATAACTCTTCCATAGC 58.938 47.826 0.00 0.00 0.00 2.97
233 247 2.376538 CGCGTACGTTGATGTGCCA 61.377 57.895 17.90 0.00 33.53 4.92
236 250 0.246757 GCTTCGCGTACGTTGATGTG 60.247 55.000 17.90 9.47 41.18 3.21
255 269 1.410004 AGCCATCATTGCCATCTTGG 58.590 50.000 0.00 0.00 41.55 3.61
277 291 1.142778 CTTCTCGTTGAGGCTAGCGC 61.143 60.000 9.00 0.00 0.00 5.92
281 295 1.919240 TGACCTTCTCGTTGAGGCTA 58.081 50.000 0.00 0.00 0.00 3.93
284 298 1.433534 GCTTGACCTTCTCGTTGAGG 58.566 55.000 0.00 0.00 0.00 3.86
330 344 6.301861 GGTCTTACGTGGAAAATAAACGAAG 58.698 40.000 0.00 1.88 39.64 3.79
337 355 2.028294 TGCCGGTCTTACGTGGAAAATA 60.028 45.455 1.90 0.00 0.00 1.40
356 374 1.600413 GGTGCAACTTGCTTAGTGTGC 60.600 52.381 14.78 13.87 45.31 4.57
357 375 1.334059 CGGTGCAACTTGCTTAGTGTG 60.334 52.381 14.78 0.00 45.31 3.82
421 439 2.551938 GCTGCAAGTCCTCTTTCCTTCT 60.552 50.000 0.00 0.00 35.30 2.85
422 440 1.809547 GCTGCAAGTCCTCTTTCCTTC 59.190 52.381 0.00 0.00 35.30 3.46
443 462 4.142790 AGACTGAGACGTTCTAGAAACCA 58.857 43.478 6.78 0.70 0.00 3.67
444 463 4.379708 GGAGACTGAGACGTTCTAGAAACC 60.380 50.000 6.78 0.00 0.00 3.27
485 509 2.294512 GGGTGCCAACTTCTCTTTTCAG 59.705 50.000 0.00 0.00 0.00 3.02
486 510 2.306847 GGGTGCCAACTTCTCTTTTCA 58.693 47.619 0.00 0.00 0.00 2.69
585 1007 1.234615 ACTTGAACCGGAATGCGTGG 61.235 55.000 9.46 0.00 0.00 4.94
586 1008 0.591170 AACTTGAACCGGAATGCGTG 59.409 50.000 9.46 0.00 0.00 5.34
600 1022 0.940126 AGAGCACGCAGTTGAACTTG 59.060 50.000 0.00 0.00 41.61 3.16
601 1023 0.940126 CAGAGCACGCAGTTGAACTT 59.060 50.000 0.00 0.00 41.61 2.66
602 1024 1.502163 GCAGAGCACGCAGTTGAACT 61.502 55.000 0.00 0.00 41.61 3.01
603 1025 1.082496 GCAGAGCACGCAGTTGAAC 60.082 57.895 0.00 0.00 41.61 3.18
621 1043 3.423154 GCGTGTCCCTGCTTTCCG 61.423 66.667 0.00 0.00 0.00 4.30
722 1156 1.379044 GTGGAGGAGGGTGCAATGG 60.379 63.158 0.00 0.00 0.00 3.16
723 1157 1.379044 GGTGGAGGAGGGTGCAATG 60.379 63.158 0.00 0.00 0.00 2.82
724 1158 1.852157 TGGTGGAGGAGGGTGCAAT 60.852 57.895 0.00 0.00 0.00 3.56
725 1159 2.449518 TGGTGGAGGAGGGTGCAA 60.450 61.111 0.00 0.00 0.00 4.08
739 1173 0.399075 CGGTCAAGGGTAAAGGTGGT 59.601 55.000 0.00 0.00 0.00 4.16
740 1174 0.958876 GCGGTCAAGGGTAAAGGTGG 60.959 60.000 0.00 0.00 0.00 4.61
743 1177 1.743995 CGGCGGTCAAGGGTAAAGG 60.744 63.158 0.00 0.00 0.00 3.11
765 1199 0.524414 GGGGTTTCAATTCCGTTCCG 59.476 55.000 0.00 0.00 0.00 4.30
791 1225 2.843545 GGGTTGGTGGAGGAAGCA 59.156 61.111 0.00 0.00 0.00 3.91
819 1253 0.830648 GATATATAGCGGGCTGGCCA 59.169 55.000 21.03 4.71 37.98 5.36
820 1254 0.106894 GGATATATAGCGGGCTGGCC 59.893 60.000 10.75 10.75 0.00 5.36
881 1322 3.615496 ACGAATCCAATAACACGCTGTAC 59.385 43.478 0.00 0.00 0.00 2.90
949 1395 2.151202 GGATCAAGGTTCGTGCAAGAA 58.849 47.619 11.22 11.22 0.00 2.52
952 1398 2.151202 GAAGGATCAAGGTTCGTGCAA 58.849 47.619 0.00 0.00 0.00 4.08
970 1416 2.106511 CCTCCCAGAAAGAAGTGTGGAA 59.893 50.000 0.00 0.00 31.04 3.53
1152 1654 3.461773 CTGCCGTCATCCCCGACT 61.462 66.667 0.00 0.00 33.54 4.18
1280 1791 1.405256 CGATCCTCTGCTTGAGCTTGT 60.405 52.381 4.44 0.00 41.35 3.16
1307 1818 1.078166 TGAGTGAGCAGGGAGAGCT 59.922 57.895 0.00 0.00 46.82 4.09
1314 1825 1.233019 CAAACAGGTGAGTGAGCAGG 58.767 55.000 0.00 0.00 0.00 4.85
1317 1828 0.871057 GAGCAAACAGGTGAGTGAGC 59.129 55.000 0.00 0.00 0.00 4.26
1318 1829 2.141517 CAGAGCAAACAGGTGAGTGAG 58.858 52.381 0.00 0.00 0.00 3.51
1319 1830 1.811558 GCAGAGCAAACAGGTGAGTGA 60.812 52.381 0.00 0.00 0.00 3.41
1321 1832 0.471617 AGCAGAGCAAACAGGTGAGT 59.528 50.000 0.00 0.00 0.00 3.41
1363 1904 2.327325 AGCCAAGGAGTAGGTGAGAA 57.673 50.000 0.00 0.00 0.00 2.87
1365 1906 4.553330 TTTTAGCCAAGGAGTAGGTGAG 57.447 45.455 0.00 0.00 0.00 3.51
1457 2293 8.141909 GCTTAATTTCCAACTATAATGGGGTTC 58.858 37.037 4.78 0.00 38.54 3.62
1488 2334 3.526841 AGGGGAGAAATTCAGCATTCTCT 59.473 43.478 13.39 0.00 46.86 3.10
1489 2335 3.895998 AGGGGAGAAATTCAGCATTCTC 58.104 45.455 6.92 6.92 46.93 2.87
1697 2549 1.813513 ATGGTCAGGCTTGAAGAACG 58.186 50.000 0.00 0.00 34.49 3.95
1726 2580 0.392729 CTGAAGGAGAAGGCAGGCAG 60.393 60.000 0.00 0.00 0.00 4.85
1775 2629 6.038714 GGATGTTGATGGGTATCTTCTTGTTC 59.961 42.308 0.00 0.00 34.31 3.18
1814 2668 4.934356 ACCTCTTTGGCTTGATAATTCCA 58.066 39.130 0.00 0.00 40.22 3.53
1851 2705 5.422970 ACTGAAATATTGGTCATGCAATGGT 59.577 36.000 8.36 0.00 46.73 3.55
1899 2798 9.489084 GAAACATATGGTTCTGTGTATGCTATA 57.511 33.333 23.54 0.00 39.29 1.31
1939 2838 4.825422 AGTGGTGATCATGTAACAGACTG 58.175 43.478 0.00 0.00 0.00 3.51
1943 2842 9.201127 CATAATAGAGTGGTGATCATGTAACAG 57.799 37.037 0.00 0.00 0.00 3.16
1994 2897 3.406764 AGTGATGCAAGACTGAAGAACC 58.593 45.455 0.00 0.00 0.00 3.62
1995 2898 3.122613 CGAGTGATGCAAGACTGAAGAAC 59.877 47.826 5.75 0.00 0.00 3.01
2022 2925 2.026262 AGGACAGCACAAATACGGGAAT 60.026 45.455 0.00 0.00 0.00 3.01
2038 2941 7.592938 CAACTGAAATATGTTGCTTAAGGACA 58.407 34.615 4.29 3.37 37.36 4.02
2090 2993 4.361451 ACGTCATCCTGAATTTTGCATC 57.639 40.909 0.00 0.00 0.00 3.91
2283 3195 3.315470 GTCACTTTTCCTGAAACCTGGTC 59.685 47.826 0.00 0.00 0.00 4.02
2483 3396 8.251721 ACACAGTTATAAAGCGAGAGAAGTAAT 58.748 33.333 0.00 0.00 0.00 1.89
2495 3408 7.065803 TCAGGAATTAGCACACAGTTATAAAGC 59.934 37.037 0.00 0.00 0.00 3.51
2504 3417 5.423015 AGTACATCAGGAATTAGCACACAG 58.577 41.667 0.00 0.00 0.00 3.66
2524 3437 3.838317 AGTAAGCATGTCTGGGACAAGTA 59.162 43.478 4.46 0.00 45.96 2.24
2570 3483 2.752354 TGGGTCTGGTTTGATATTTGCG 59.248 45.455 0.00 0.00 0.00 4.85
2910 3967 4.406649 TGCTATGACAACCAGATGAGATGA 59.593 41.667 0.00 0.00 0.00 2.92
3270 4327 1.748493 ACTTCTTGCAAAAAGTCGGCA 59.252 42.857 12.42 0.00 29.89 5.69
3353 4410 2.027469 GGGACGGAGGAAGTACAACATT 60.027 50.000 0.00 0.00 0.00 2.71
3355 4412 0.971386 GGGACGGAGGAAGTACAACA 59.029 55.000 0.00 0.00 0.00 3.33
3356 4413 0.971386 TGGGACGGAGGAAGTACAAC 59.029 55.000 0.00 0.00 0.00 3.32
3357 4414 1.946984 ATGGGACGGAGGAAGTACAA 58.053 50.000 0.00 0.00 0.00 2.41
3359 4416 5.997384 ATATTATGGGACGGAGGAAGTAC 57.003 43.478 0.00 0.00 0.00 2.73
3360 4417 7.472741 TCTTATATTATGGGACGGAGGAAGTA 58.527 38.462 0.00 0.00 0.00 2.24
3361 4418 6.320518 TCTTATATTATGGGACGGAGGAAGT 58.679 40.000 0.00 0.00 0.00 3.01
3362 4419 6.852420 TCTTATATTATGGGACGGAGGAAG 57.148 41.667 0.00 0.00 0.00 3.46
3363 4420 6.294899 CGTTCTTATATTATGGGACGGAGGAA 60.295 42.308 0.00 0.00 0.00 3.36
3364 4421 5.184479 CGTTCTTATATTATGGGACGGAGGA 59.816 44.000 0.00 0.00 0.00 3.71
3365 4422 5.047519 ACGTTCTTATATTATGGGACGGAGG 60.048 44.000 13.18 0.00 0.00 4.30
3366 4423 6.022163 ACGTTCTTATATTATGGGACGGAG 57.978 41.667 13.18 0.00 0.00 4.63
3367 4424 6.409524 AACGTTCTTATATTATGGGACGGA 57.590 37.500 0.00 0.00 0.00 4.69
3368 4425 6.480981 ACAAACGTTCTTATATTATGGGACGG 59.519 38.462 0.00 3.37 0.00 4.79
3369 4426 7.223193 TCACAAACGTTCTTATATTATGGGACG 59.777 37.037 0.00 9.33 0.00 4.79
3370 4427 8.428186 TCACAAACGTTCTTATATTATGGGAC 57.572 34.615 0.00 0.00 0.00 4.46
3379 4436 9.778993 GACACTAGTATCACAAACGTTCTTATA 57.221 33.333 0.00 0.00 0.00 0.98
3380 4437 8.301720 TGACACTAGTATCACAAACGTTCTTAT 58.698 33.333 0.00 0.00 0.00 1.73
3381 4438 7.650890 TGACACTAGTATCACAAACGTTCTTA 58.349 34.615 0.00 0.00 0.00 2.10
3382 4439 6.509656 TGACACTAGTATCACAAACGTTCTT 58.490 36.000 0.00 0.00 0.00 2.52
3383 4440 6.080648 TGACACTAGTATCACAAACGTTCT 57.919 37.500 0.00 0.00 0.00 3.01
3384 4441 6.758593 TTGACACTAGTATCACAAACGTTC 57.241 37.500 2.59 0.00 0.00 3.95
3385 4442 7.542534 TTTTGACACTAGTATCACAAACGTT 57.457 32.000 2.59 0.00 0.00 3.99
3386 4443 7.404203 GTTTTTGACACTAGTATCACAAACGT 58.596 34.615 23.01 3.71 36.39 3.99
3387 4444 7.816490 GTTTTTGACACTAGTATCACAAACG 57.184 36.000 23.01 0.70 36.39 3.60
3388 4445 7.404203 ACGTTTTTGACACTAGTATCACAAAC 58.596 34.615 25.63 25.63 40.03 2.93
3389 4446 7.542534 ACGTTTTTGACACTAGTATCACAAA 57.457 32.000 10.64 10.64 0.00 2.83
3390 4447 7.493320 AGAACGTTTTTGACACTAGTATCACAA 59.507 33.333 2.59 0.37 0.00 3.33
3391 4448 6.982141 AGAACGTTTTTGACACTAGTATCACA 59.018 34.615 2.59 0.00 0.00 3.58
3392 4449 7.404139 AGAACGTTTTTGACACTAGTATCAC 57.596 36.000 2.59 0.00 0.00 3.06
3393 4450 9.701098 ATAAGAACGTTTTTGACACTAGTATCA 57.299 29.630 13.87 0.00 0.00 2.15
3401 4458 9.498307 CCCATAATATAAGAACGTTTTTGACAC 57.502 33.333 13.87 0.00 0.00 3.67
3402 4459 9.451002 TCCCATAATATAAGAACGTTTTTGACA 57.549 29.630 13.87 0.01 0.00 3.58
3403 4460 9.712359 GTCCCATAATATAAGAACGTTTTTGAC 57.288 33.333 13.87 5.89 0.00 3.18
3404 4461 8.605746 CGTCCCATAATATAAGAACGTTTTTGA 58.394 33.333 13.87 2.81 0.00 2.69
3405 4462 7.853929 CCGTCCCATAATATAAGAACGTTTTTG 59.146 37.037 13.87 0.00 0.00 2.44
3406 4463 7.769970 TCCGTCCCATAATATAAGAACGTTTTT 59.230 33.333 9.22 9.22 0.00 1.94
3407 4464 7.274447 TCCGTCCCATAATATAAGAACGTTTT 58.726 34.615 0.46 0.00 0.00 2.43
3408 4465 6.819284 TCCGTCCCATAATATAAGAACGTTT 58.181 36.000 0.46 0.00 0.00 3.60
3409 4466 6.409524 TCCGTCCCATAATATAAGAACGTT 57.590 37.500 0.00 0.00 0.00 3.99
3410 4467 5.047519 CCTCCGTCCCATAATATAAGAACGT 60.048 44.000 0.00 0.00 0.00 3.99
3411 4468 5.408356 CCTCCGTCCCATAATATAAGAACG 58.592 45.833 0.00 0.00 0.00 3.95
3412 4469 5.482878 TCCCTCCGTCCCATAATATAAGAAC 59.517 44.000 0.00 0.00 0.00 3.01
3413 4470 5.657446 TCCCTCCGTCCCATAATATAAGAA 58.343 41.667 0.00 0.00 0.00 2.52
3414 4471 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
3415 4472 5.024118 ACTCCCTCCGTCCCATAATATAAG 58.976 45.833 0.00 0.00 0.00 1.73
3416 4473 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
3417 4474 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
3418 4475 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
3419 4476 3.659195 TCTACTCCCTCCGTCCCATAATA 59.341 47.826 0.00 0.00 0.00 0.98
3420 4477 2.449730 TCTACTCCCTCCGTCCCATAAT 59.550 50.000 0.00 0.00 0.00 1.28
3421 4478 1.854939 TCTACTCCCTCCGTCCCATAA 59.145 52.381 0.00 0.00 0.00 1.90
3422 4479 1.526315 TCTACTCCCTCCGTCCCATA 58.474 55.000 0.00 0.00 0.00 2.74
3423 4480 0.861155 ATCTACTCCCTCCGTCCCAT 59.139 55.000 0.00 0.00 0.00 4.00
3424 4481 0.185416 GATCTACTCCCTCCGTCCCA 59.815 60.000 0.00 0.00 0.00 4.37
3425 4482 0.479378 AGATCTACTCCCTCCGTCCC 59.521 60.000 0.00 0.00 0.00 4.46
3426 4483 2.368311 AAGATCTACTCCCTCCGTCC 57.632 55.000 0.00 0.00 0.00 4.79
3427 4484 3.148412 GGTAAGATCTACTCCCTCCGTC 58.852 54.545 0.00 0.00 0.00 4.79
3428 4485 2.512896 TGGTAAGATCTACTCCCTCCGT 59.487 50.000 0.00 0.00 0.00 4.69
3429 4486 3.225177 TGGTAAGATCTACTCCCTCCG 57.775 52.381 0.00 0.00 0.00 4.63
3430 4487 7.800300 AAATATGGTAAGATCTACTCCCTCC 57.200 40.000 0.00 0.00 0.00 4.30
3431 4488 9.713713 GAAAAATATGGTAAGATCTACTCCCTC 57.286 37.037 0.00 0.00 0.00 4.30
3432 4489 9.453830 AGAAAAATATGGTAAGATCTACTCCCT 57.546 33.333 0.00 0.00 0.00 4.20
3482 4540 8.652290 AGTTCTAGATTTGTCCTAAGTCAAACT 58.348 33.333 0.00 0.00 34.56 2.66
3510 4568 5.522641 ACTCCATCCATTCCAAATTAGCTT 58.477 37.500 0.00 0.00 0.00 3.74
3572 4631 9.010029 CCTATAAGTTTTACAAACCACTGATGT 57.990 33.333 0.00 0.00 0.00 3.06
3573 4632 9.010029 ACCTATAAGTTTTACAAACCACTGATG 57.990 33.333 0.00 0.00 0.00 3.07
3574 4633 9.010029 CACCTATAAGTTTTACAAACCACTGAT 57.990 33.333 0.00 0.00 0.00 2.90
3579 4638 8.927675 ATGTCACCTATAAGTTTTACAAACCA 57.072 30.769 0.00 0.00 0.00 3.67
3643 4702 3.231818 CTGGGACGTATTGGTATCTCCT 58.768 50.000 0.00 0.00 37.07 3.69
3892 4953 4.735369 TGAACTGAAATGGGAGGCTAAAA 58.265 39.130 0.00 0.00 0.00 1.52
3957 5081 4.411869 TGCAGATGGATACCAGGTATTTCA 59.588 41.667 13.74 14.53 36.75 2.69
3988 5112 7.700322 GTGTCATCACGATTACTGTCATTAT 57.300 36.000 0.00 0.00 34.79 1.28
3990 5114 6.794369 ACAGTGTCATCACGATTACTGTCATT 60.794 38.462 12.32 0.00 44.75 2.57
4062 5186 3.192844 CGAAGAACAGAGCACCTAGGTAA 59.807 47.826 15.80 0.00 0.00 2.85
4068 5192 1.257743 TAGCGAAGAACAGAGCACCT 58.742 50.000 0.00 0.00 0.00 4.00
4377 5522 6.109359 GTGCTACTTGTAGGATCATGAGTTT 58.891 40.000 0.09 0.00 0.00 2.66
4417 5562 2.531508 GCGTGCAAGAAAACAACAAGAG 59.468 45.455 2.99 0.00 0.00 2.85
4436 5581 1.069906 GTACTGCTTGAACAACCTGCG 60.070 52.381 0.00 0.00 0.00 5.18
4477 5622 0.622136 ACAATCCTGCAGCCATCTGA 59.378 50.000 8.66 0.00 42.95 3.27
4637 5783 6.509418 TTTACATTTCAATGACCTAGTGCC 57.491 37.500 6.53 0.00 39.67 5.01
4638 5784 8.986477 AAATTTACATTTCAATGACCTAGTGC 57.014 30.769 6.53 0.00 39.67 4.40
4824 5981 1.770294 TTTGGTTGTCAGGGTGGAAC 58.230 50.000 0.00 0.00 0.00 3.62
4832 5989 4.082787 AGCGGTCAATATTTTGGTTGTCAG 60.083 41.667 0.00 0.00 33.44 3.51
4840 5997 6.550843 TGTTATGTCAGCGGTCAATATTTTG 58.449 36.000 0.00 0.00 0.00 2.44
4850 6007 5.914033 ACAGTATTATGTTATGTCAGCGGT 58.086 37.500 0.00 0.00 0.00 5.68
4851 6008 5.117135 CGACAGTATTATGTTATGTCAGCGG 59.883 44.000 4.71 0.00 40.17 5.52
4901 6058 3.316573 GACCCCTGGAGAACCTGCG 62.317 68.421 0.00 0.00 37.04 5.18
5092 6253 6.572519 AGTGCTTGAACAAAATACACATTGT 58.427 32.000 0.00 0.00 41.31 2.71
5573 6745 4.772886 AAGTTCTAATGATAGGGCCGTT 57.227 40.909 1.81 0.00 0.00 4.44
5574 6746 5.881923 TTAAGTTCTAATGATAGGGCCGT 57.118 39.130 2.24 2.24 0.00 5.68
5576 6748 6.372937 GCAGATTAAGTTCTAATGATAGGGCC 59.627 42.308 0.00 0.00 0.00 5.80
5577 6749 6.936900 TGCAGATTAAGTTCTAATGATAGGGC 59.063 38.462 0.00 0.00 0.00 5.19
5636 6808 7.135467 GGAAACTGAAAAGCTTTAGAACTCAG 58.865 38.462 25.71 25.71 35.92 3.35
5787 6989 1.029947 CACTAACCCCCATCAACGCC 61.030 60.000 0.00 0.00 0.00 5.68
5791 6993 1.301623 CGCCACTAACCCCCATCAA 59.698 57.895 0.00 0.00 0.00 2.57
5802 7004 4.752879 GTCTTGCCGGCGCCACTA 62.753 66.667 28.98 13.76 0.00 2.74
5823 7025 1.615116 CCAGCCAACACATCCATCAGT 60.615 52.381 0.00 0.00 0.00 3.41
5883 7085 2.029307 GCTTCTTCGGGTAGCCGGAT 62.029 60.000 31.34 0.00 33.01 4.18
6055 7257 2.370189 AGTTCCCAGAACAAGGAGTCAG 59.630 50.000 9.92 0.00 32.57 3.51
6177 7388 1.580845 GCAGTCCAACAAGCGCATCT 61.581 55.000 11.47 0.00 0.00 2.90
6455 7666 8.779603 AAAAATGTTAATTTTGGAAACATGCG 57.220 26.923 4.67 0.00 43.63 4.73
6623 7874 3.641434 ACTATCACTCAAAGCCATGCT 57.359 42.857 0.00 0.00 42.56 3.79
6716 7967 2.079925 GTCACTTCCAGCATCCAAGTC 58.920 52.381 0.00 0.00 0.00 3.01
6816 8070 7.984050 TCAATCCTTGAGCAAAAATGTAAAACA 59.016 29.630 0.00 0.00 34.08 2.83
6817 8071 8.364129 TCAATCCTTGAGCAAAAATGTAAAAC 57.636 30.769 0.00 0.00 34.08 2.43
6848 8102 5.128919 GTTTGTTCAGCCCATCATATCTCT 58.871 41.667 0.00 0.00 0.00 3.10
6879 8149 7.719633 GGTTTCTCCTGCAAAATATACCATAGA 59.280 37.037 0.00 0.00 0.00 1.98
6964 8235 2.155194 GCTCTGCGAGTACTGCGTG 61.155 63.158 0.00 2.40 34.24 5.34
7384 8655 3.259625 AGAGGTACCAGCAGAACTTCTTC 59.740 47.826 15.94 0.00 0.00 2.87
7708 8979 3.222354 GACGCCCAGGAAGTCGTGT 62.222 63.158 0.00 0.00 35.12 4.49
7738 9009 3.291101 GACAGCGAACCCGGCAGTA 62.291 63.158 0.00 0.00 36.06 2.74
7765 9036 1.446272 GGAGAGACCAAAGGCGACG 60.446 63.158 0.00 0.00 38.79 5.12
7823 9094 4.697756 GCCCGTGCACTGCCACTA 62.698 66.667 16.19 0.00 37.47 2.74
7982 9257 6.763303 AATAAGCGCAAAACAAAACTAAGG 57.237 33.333 11.47 0.00 0.00 2.69
7992 9267 7.698130 AGATTGATCAACTAATAAGCGCAAAAC 59.302 33.333 11.07 0.00 0.00 2.43
8049 9324 6.870971 TCGAAAAGTAAGTAAACCATTGCT 57.129 33.333 0.00 0.00 32.36 3.91
8050 9325 7.917720 TTTCGAAAAGTAAGTAAACCATTGC 57.082 32.000 8.44 0.00 0.00 3.56
8052 9327 9.027129 GCTTTTTCGAAAAGTAAGTAAACCATT 57.973 29.630 21.53 0.00 0.00 3.16
8053 9328 8.192110 TGCTTTTTCGAAAAGTAAGTAAACCAT 58.808 29.630 21.53 0.00 0.00 3.55
8054 9329 7.536855 TGCTTTTTCGAAAAGTAAGTAAACCA 58.463 30.769 21.53 8.22 0.00 3.67
8055 9330 7.974243 TGCTTTTTCGAAAAGTAAGTAAACC 57.026 32.000 21.53 6.08 0.00 3.27
8056 9331 9.829637 CATTGCTTTTTCGAAAAGTAAGTAAAC 57.170 29.630 21.53 6.38 35.82 2.01
8057 9332 9.026074 CCATTGCTTTTTCGAAAAGTAAGTAAA 57.974 29.630 21.53 14.96 35.82 2.01
8058 9333 8.192110 ACCATTGCTTTTTCGAAAAGTAAGTAA 58.808 29.630 21.53 20.42 35.82 2.24
8059 9334 7.708998 ACCATTGCTTTTTCGAAAAGTAAGTA 58.291 30.769 21.53 13.92 35.82 2.24
8060 9335 6.569780 ACCATTGCTTTTTCGAAAAGTAAGT 58.430 32.000 21.53 13.40 35.82 2.24
8061 9336 7.463469 AACCATTGCTTTTTCGAAAAGTAAG 57.537 32.000 21.53 17.39 35.82 2.34
8062 9337 7.835634 AAACCATTGCTTTTTCGAAAAGTAA 57.164 28.000 21.53 19.50 36.55 2.24
8063 9338 8.192110 AGTAAACCATTGCTTTTTCGAAAAGTA 58.808 29.630 21.53 13.25 0.00 2.24
8064 9339 7.039270 AGTAAACCATTGCTTTTTCGAAAAGT 58.961 30.769 21.53 12.41 0.00 2.66
8065 9340 7.221838 TGAGTAAACCATTGCTTTTTCGAAAAG 59.778 33.333 21.53 16.55 31.06 2.27
8066 9341 7.036220 TGAGTAAACCATTGCTTTTTCGAAAA 58.964 30.769 19.08 19.08 31.06 2.29
8067 9342 6.565234 TGAGTAAACCATTGCTTTTTCGAAA 58.435 32.000 6.47 6.47 31.06 3.46
8068 9343 6.137794 TGAGTAAACCATTGCTTTTTCGAA 57.862 33.333 0.00 0.00 31.06 3.71
8069 9344 5.298276 ACTGAGTAAACCATTGCTTTTTCGA 59.702 36.000 0.00 0.00 31.06 3.71
8070 9345 5.519722 ACTGAGTAAACCATTGCTTTTTCG 58.480 37.500 0.00 0.00 31.06 3.46
8071 9346 6.582672 GCTACTGAGTAAACCATTGCTTTTTC 59.417 38.462 0.00 0.00 31.06 2.29
8072 9347 6.040391 TGCTACTGAGTAAACCATTGCTTTTT 59.960 34.615 0.00 0.00 31.06 1.94
8073 9348 5.534654 TGCTACTGAGTAAACCATTGCTTTT 59.465 36.000 0.00 0.00 31.06 2.27
8074 9349 5.070001 TGCTACTGAGTAAACCATTGCTTT 58.930 37.500 0.00 0.00 31.06 3.51
8075 9350 4.651778 TGCTACTGAGTAAACCATTGCTT 58.348 39.130 0.00 0.00 31.06 3.91
8141 9418 4.637534 CCATTCTGGTTCATCGAATTCAGT 59.362 41.667 6.22 0.00 32.17 3.41
8162 9439 2.926779 AGAGCCACTCAGCAGCCA 60.927 61.111 0.00 0.00 32.06 4.75
8187 9464 2.100989 GTGGACATAGAAGAGGACCGT 58.899 52.381 0.00 0.00 0.00 4.83
8202 9479 0.395312 TCTCAACGGAAAGGGTGGAC 59.605 55.000 0.00 0.00 0.00 4.02
8207 9484 0.875059 GCAACTCTCAACGGAAAGGG 59.125 55.000 0.00 0.00 0.00 3.95
8211 9488 0.468226 ACCTGCAACTCTCAACGGAA 59.532 50.000 0.00 0.00 0.00 4.30
8223 9500 5.685520 TTATGTACATGACCTACCTGCAA 57.314 39.130 18.81 0.00 0.00 4.08
8258 9609 0.683179 GCATCCCTGTGGTAAACCCC 60.683 60.000 0.00 0.00 34.29 4.95
8302 9653 2.480642 AAAGTTTGGCCCCAGGTTTA 57.519 45.000 0.00 0.00 0.00 2.01
8326 9677 0.596082 AAAGTTTTCCCATGTCGCCG 59.404 50.000 0.00 0.00 0.00 6.46
8332 9683 0.732538 GGCGCGAAAGTTTTCCCATG 60.733 55.000 12.10 0.00 33.68 3.66
8337 9688 4.595198 AGTTATAGGCGCGAAAGTTTTC 57.405 40.909 12.10 0.00 0.00 2.29
8346 9697 5.652744 ATTTTTCAGTAGTTATAGGCGCG 57.347 39.130 0.00 0.00 0.00 6.86
8405 9756 5.163571 TGCAACTGAGCTTTATTTTGTGTGA 60.164 36.000 0.00 0.00 34.99 3.58
8480 9833 5.040635 GCACCCATGTATTGTTATTTTCGG 58.959 41.667 0.00 0.00 0.00 4.30
8483 9836 7.936301 ACTTTTGCACCCATGTATTGTTATTTT 59.064 29.630 0.00 0.00 0.00 1.82
8492 9845 3.761752 GGTACACTTTTGCACCCATGTAT 59.238 43.478 0.00 0.00 0.00 2.29
8493 9846 3.150767 GGTACACTTTTGCACCCATGTA 58.849 45.455 0.00 0.00 0.00 2.29
8502 9857 5.844301 CCATTGATTTGGTACACTTTTGC 57.156 39.130 0.00 0.00 39.29 3.68
8570 9931 3.336138 AGACGATGAAGGGTCTTTTCC 57.664 47.619 0.00 0.00 40.47 3.13
8620 9982 6.256321 GTGTTGAACTCAGTTGATGCATTTTT 59.744 34.615 0.00 0.00 0.00 1.94
8633 9995 2.816689 TGTACCGTGTGTTGAACTCAG 58.183 47.619 0.00 0.00 0.00 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.