Multiple sequence alignment - TraesCS7B01G291900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G291900 chr7B 100.000 6534 0 0 1 6534 528762235 528768768 0.000000e+00 12067
1 TraesCS7B01G291900 chr7D 91.578 3562 188 57 554 4065 500626112 500629611 0.000000e+00 4813
2 TraesCS7B01G291900 chr7D 90.832 2476 152 28 4098 6534 500629611 500632050 0.000000e+00 3245
3 TraesCS7B01G291900 chr7D 89.840 561 49 6 9 566 500625292 500625847 0.000000e+00 713
4 TraesCS7B01G291900 chr7D 76.172 256 51 7 189 442 585416845 585417092 6.880000e-25 126
5 TraesCS7B01G291900 chr7A 92.461 2414 124 22 3676 6083 566540433 566542794 0.000000e+00 3397
6 TraesCS7B01G291900 chr7A 93.275 2275 107 26 1398 3638 566538174 566540436 0.000000e+00 3312
7 TraesCS7B01G291900 chr7A 88.218 1392 94 32 1 1360 566536820 566538173 0.000000e+00 1598
8 TraesCS7B01G291900 chr6B 86.364 154 21 0 4746 4899 239286222 239286069 1.130000e-37 169
9 TraesCS7B01G291900 chr6B 81.875 160 25 2 1149 1308 239290312 239290157 1.480000e-26 132
10 TraesCS7B01G291900 chr6B 75.472 265 57 6 189 451 213389452 213389194 8.900000e-24 122
11 TraesCS7B01G291900 chr6A 86.395 147 20 0 4753 4899 181897430 181897284 1.890000e-35 161
12 TraesCS7B01G291900 chr6A 79.894 189 35 2 3812 4000 181898561 181898376 1.140000e-27 135
13 TraesCS7B01G291900 chr1A 78.195 266 48 6 189 451 559048545 559048287 1.890000e-35 161
14 TraesCS7B01G291900 chr6D 85.714 147 21 0 4753 4899 139311134 139310988 8.770000e-34 156
15 TraesCS7B01G291900 chr6D 80.749 187 33 2 3812 3998 139312264 139312081 6.830000e-30 143
16 TraesCS7B01G291900 chr5A 77.903 267 47 7 189 451 52445795 52445537 8.770000e-34 156
17 TraesCS7B01G291900 chr1B 77.255 255 48 6 200 451 90310027 90310274 2.460000e-29 141
18 TraesCS7B01G291900 chr1D 76.226 265 53 6 190 451 489985426 489985683 1.480000e-26 132
19 TraesCS7B01G291900 chr2B 75.836 269 53 8 189 451 23883216 23883478 6.880000e-25 126


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G291900 chr7B 528762235 528768768 6533 False 12067.000000 12067 100.000 1 6534 1 chr7B.!!$F1 6533
1 TraesCS7B01G291900 chr7D 500625292 500632050 6758 False 2923.666667 4813 90.750 9 6534 3 chr7D.!!$F2 6525
2 TraesCS7B01G291900 chr7A 566536820 566542794 5974 False 2769.000000 3397 91.318 1 6083 3 chr7A.!!$F1 6082

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
345 352 0.692419 AGAAGGGGTCAGGCGATGAT 60.692 55.000 0.00 0.0 40.92 2.45 F
972 1283 1.096386 AGAAGATAGCCGCGACGAGT 61.096 55.000 8.23 0.0 0.00 4.18 F
1446 1764 1.064389 GGTAGCCTCTTGCAGGGAAAT 60.064 52.381 0.00 0.0 43.70 2.17 F
3148 3501 1.147557 GCAATTGCAACCATAGCGCC 61.148 55.000 25.36 0.0 41.59 6.53 F
3952 4311 0.172803 CCCTACTCGGTGAAGGTTCG 59.827 60.000 0.00 0.0 0.00 3.95 F
3970 4329 0.511221 CGCTTGGTCGTGTTTACAGG 59.489 55.000 0.00 0.0 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1379 1697 0.035152 TGCAGCGACCAAGGATCAAT 60.035 50.000 0.00 0.0 0.00 2.57 R
2598 2938 1.037030 ACATTTATGCAGTGGCCCGG 61.037 55.000 0.00 0.0 40.13 5.73 R
3209 3562 0.390998 GGCTGAGCAAGTGGACTCTC 60.391 60.000 6.82 0.0 33.92 3.20 R
5000 5360 0.613292 GACTGCTCTGACCTCTCCCA 60.613 60.000 0.00 0.0 0.00 4.37 R
5185 5545 0.994247 TGGACAGATGTTGATGGCCT 59.006 50.000 3.32 0.0 45.61 5.19 R
5670 6055 1.339610 CCGTTCACAAAATTCCCAGCA 59.660 47.619 0.00 0.0 0.00 4.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 38 6.420903 CGACGGCTATCTGAAGATGAAATAAA 59.579 38.462 2.99 0.00 36.05 1.40
46 50 9.506018 TGAAGATGAAATAAAGTCATTCACTCA 57.494 29.630 0.00 0.00 35.84 3.41
83 87 1.705337 CCTTGGCGGTGCATCTAACG 61.705 60.000 0.00 0.00 0.00 3.18
88 92 3.884900 GGTGCATCTAACGCCGTT 58.115 55.556 7.93 7.93 0.00 4.44
92 96 1.396996 GTGCATCTAACGCCGTTGAAT 59.603 47.619 13.65 2.87 0.00 2.57
148 152 3.198872 GGATTCAATCGGAGTTGGTCTC 58.801 50.000 0.00 0.00 42.07 3.36
149 153 3.369471 GGATTCAATCGGAGTTGGTCTCA 60.369 47.826 0.00 0.00 44.40 3.27
210 217 3.064207 GTGTCTTCGTGTTGCATCCTTA 58.936 45.455 0.00 0.00 0.00 2.69
241 248 4.471025 TGCTTCTCTTCATCAGTGGGATTA 59.529 41.667 0.00 0.00 32.57 1.75
258 265 4.233789 GGATTAATGTTTTGCTGCGTTGA 58.766 39.130 0.00 0.00 0.00 3.18
275 282 4.261801 CGTTGATCATTTGGGGTCTTAGT 58.738 43.478 0.00 0.00 0.00 2.24
345 352 0.692419 AGAAGGGGTCAGGCGATGAT 60.692 55.000 0.00 0.00 40.92 2.45
350 357 2.182842 GGTCAGGCGATGATGGCAC 61.183 63.158 1.08 0.00 40.92 5.01
402 409 2.616634 TCGTCGCTAGATGGTCTACT 57.383 50.000 0.00 0.00 34.23 2.57
403 410 3.740631 TCGTCGCTAGATGGTCTACTA 57.259 47.619 0.00 0.00 34.23 1.82
404 411 3.388308 TCGTCGCTAGATGGTCTACTAC 58.612 50.000 0.00 0.00 34.23 2.73
486 494 8.549338 AGTTTTTCTAAAAATACCCGAGAGAG 57.451 34.615 4.09 0.00 39.75 3.20
540 548 1.211949 ACCCTGAAATATGTCACCCGG 59.788 52.381 0.00 0.00 0.00 5.73
587 871 6.967199 AGACGGATCGAATTTTGATTTAAAGC 59.033 34.615 0.00 0.00 0.00 3.51
591 875 7.273381 CGGATCGAATTTTGATTTAAAGCTTGT 59.727 33.333 0.00 0.00 0.00 3.16
592 876 8.375465 GGATCGAATTTTGATTTAAAGCTTGTG 58.625 33.333 0.00 0.00 0.00 3.33
593 877 7.636259 TCGAATTTTGATTTAAAGCTTGTGG 57.364 32.000 0.00 0.00 0.00 4.17
594 878 6.145371 TCGAATTTTGATTTAAAGCTTGTGGC 59.855 34.615 0.00 0.00 42.19 5.01
595 879 6.073873 CGAATTTTGATTTAAAGCTTGTGGCA 60.074 34.615 0.00 0.00 44.79 4.92
596 880 7.360269 CGAATTTTGATTTAAAGCTTGTGGCAT 60.360 33.333 0.00 0.00 44.79 4.40
597 881 8.845413 AATTTTGATTTAAAGCTTGTGGCATA 57.155 26.923 0.00 0.00 44.79 3.14
598 882 7.887996 TTTTGATTTAAAGCTTGTGGCATAG 57.112 32.000 0.00 0.00 44.79 2.23
599 883 6.832520 TTGATTTAAAGCTTGTGGCATAGA 57.167 33.333 0.00 0.00 44.79 1.98
972 1283 1.096386 AGAAGATAGCCGCGACGAGT 61.096 55.000 8.23 0.00 0.00 4.18
1052 1363 4.168291 CCTCCTCCTCGCCCTTGC 62.168 72.222 0.00 0.00 0.00 4.01
1123 1435 2.076863 CTCTTGGTTTCTTGGTAGGCG 58.923 52.381 0.00 0.00 0.00 5.52
1142 1460 1.397190 CGTTCGTTGTGTGTCTGATGC 60.397 52.381 0.00 0.00 0.00 3.91
1148 1466 3.138304 GTTGTGTGTCTGATGCTTGGTA 58.862 45.455 0.00 0.00 0.00 3.25
1169 1487 1.322442 GCTCTGGGTTCTTGCAGTTT 58.678 50.000 0.00 0.00 0.00 2.66
1333 1651 6.592220 GGTCTCTCTCTTGTCCTAAATTGTTC 59.408 42.308 0.00 0.00 0.00 3.18
1361 1679 5.391312 TGAAGAATTAAAGAGGGCAAAGC 57.609 39.130 0.00 0.00 0.00 3.51
1362 1680 4.082787 TGAAGAATTAAAGAGGGCAAAGCG 60.083 41.667 0.00 0.00 0.00 4.68
1363 1681 3.686016 AGAATTAAAGAGGGCAAAGCGA 58.314 40.909 0.00 0.00 0.00 4.93
1364 1682 4.273318 AGAATTAAAGAGGGCAAAGCGAT 58.727 39.130 0.00 0.00 0.00 4.58
1365 1683 4.706962 AGAATTAAAGAGGGCAAAGCGATT 59.293 37.500 0.00 0.00 0.00 3.34
1366 1684 5.185828 AGAATTAAAGAGGGCAAAGCGATTT 59.814 36.000 0.00 0.00 0.00 2.17
1367 1685 2.730550 AAAGAGGGCAAAGCGATTTG 57.269 45.000 21.29 21.29 35.15 2.32
1422 1740 1.415659 TGGTTGCATGAAAGGTTTGGG 59.584 47.619 0.00 0.00 0.00 4.12
1423 1741 1.511850 GTTGCATGAAAGGTTTGGGC 58.488 50.000 0.00 0.00 0.00 5.36
1424 1742 1.126488 TTGCATGAAAGGTTTGGGCA 58.874 45.000 0.00 0.00 0.00 5.36
1425 1743 1.350071 TGCATGAAAGGTTTGGGCAT 58.650 45.000 0.00 0.00 0.00 4.40
1427 1745 1.676615 GCATGAAAGGTTTGGGCATGG 60.677 52.381 0.00 0.00 37.42 3.66
1428 1746 1.624813 CATGAAAGGTTTGGGCATGGT 59.375 47.619 0.00 0.00 34.29 3.55
1429 1747 2.685106 TGAAAGGTTTGGGCATGGTA 57.315 45.000 0.00 0.00 0.00 3.25
1430 1748 2.524306 TGAAAGGTTTGGGCATGGTAG 58.476 47.619 0.00 0.00 0.00 3.18
1431 1749 1.204704 GAAAGGTTTGGGCATGGTAGC 59.795 52.381 0.00 0.00 0.00 3.58
1446 1764 1.064389 GGTAGCCTCTTGCAGGGAAAT 60.064 52.381 0.00 0.00 43.70 2.17
1447 1765 2.293170 GTAGCCTCTTGCAGGGAAATC 58.707 52.381 0.00 0.00 43.70 2.17
1456 1774 2.259917 TGCAGGGAAATCTCTGTCAGA 58.740 47.619 11.72 1.78 34.78 3.27
1458 1776 3.269178 GCAGGGAAATCTCTGTCAGAAG 58.731 50.000 11.72 0.00 33.62 2.85
1474 1793 3.152341 CAGAAGTTGCATCCTTTGAGGT 58.848 45.455 0.00 0.00 36.53 3.85
1486 1805 5.319043 TCCTTTGAGGTATTTTGGACACT 57.681 39.130 0.00 0.00 36.53 3.55
1513 1840 3.674997 AGTGTACAAACAGTATGCTGGG 58.325 45.455 15.65 6.78 46.62 4.45
1521 1848 3.091633 ACAGTATGCTGGGCAGAAAAT 57.908 42.857 15.65 0.00 46.62 1.82
1522 1849 4.235079 ACAGTATGCTGGGCAGAAAATA 57.765 40.909 15.65 0.00 46.62 1.40
1523 1850 4.796606 ACAGTATGCTGGGCAGAAAATAT 58.203 39.130 15.65 0.00 46.62 1.28
1524 1851 4.823989 ACAGTATGCTGGGCAGAAAATATC 59.176 41.667 15.65 0.00 46.62 1.63
1525 1852 5.068636 CAGTATGCTGGGCAGAAAATATCT 58.931 41.667 2.35 0.00 43.65 1.98
1526 1853 5.048921 CAGTATGCTGGGCAGAAAATATCTG 60.049 44.000 2.35 1.13 46.51 2.90
1527 1854 7.411313 CAGTATGCTGGGCAGAAAATATCTGT 61.411 42.308 2.35 0.00 46.05 3.41
1614 1941 6.116126 AGATTTATGTAACCCTGCTCTGAAC 58.884 40.000 0.00 0.00 0.00 3.18
1615 1942 5.499004 TTTATGTAACCCTGCTCTGAACT 57.501 39.130 0.00 0.00 0.00 3.01
1616 1943 2.839486 TGTAACCCTGCTCTGAACTG 57.161 50.000 0.00 0.00 0.00 3.16
1617 1944 2.325484 TGTAACCCTGCTCTGAACTGA 58.675 47.619 0.00 0.00 0.00 3.41
1618 1945 2.037251 TGTAACCCTGCTCTGAACTGAC 59.963 50.000 0.00 0.00 0.00 3.51
1626 1958 5.279506 CCCTGCTCTGAACTGACTAGTTTTA 60.280 44.000 0.00 0.00 46.79 1.52
1678 2010 7.252612 TGGAGAAACCTCTATGTATTTGTGA 57.747 36.000 0.00 0.00 39.86 3.58
1715 2047 6.037098 AGTTGCTGTAGACTATCGAAATGTC 58.963 40.000 0.00 0.00 0.00 3.06
1766 2098 9.019656 GTGCCAATTTTATTTTCCCCTTTATTT 57.980 29.630 0.00 0.00 0.00 1.40
1794 2126 6.837992 TCTTATCTGATTTTACCGTTGTTGC 58.162 36.000 0.00 0.00 0.00 4.17
1799 2131 5.473846 TCTGATTTTACCGTTGTTGCCATAA 59.526 36.000 0.00 0.00 0.00 1.90
1847 2179 2.370189 GCACTGATATACCCTGCTTCCT 59.630 50.000 0.00 0.00 0.00 3.36
1848 2180 3.181450 GCACTGATATACCCTGCTTCCTT 60.181 47.826 0.00 0.00 0.00 3.36
1907 2240 1.740718 GCACTCTTGGCTACCTACTGC 60.741 57.143 0.00 0.00 0.00 4.40
2173 2506 1.269413 CGATGATGCAGGAATTTGGCC 60.269 52.381 0.00 0.00 0.00 5.36
2405 2740 3.063997 CGCTTTCTGTATTGTAAGGCCTG 59.936 47.826 5.69 0.00 0.00 4.85
2547 2887 5.515270 GGTTGCCGAAGCTGAATTTAATTAC 59.485 40.000 0.00 0.00 40.80 1.89
2598 2938 2.759191 TGATGATCATCGGCACTAAGC 58.241 47.619 26.52 4.28 40.63 3.09
2614 2954 2.753849 GCCGGGCCACTGCATAAA 60.754 61.111 8.12 0.00 40.13 1.40
2619 2959 1.202290 CGGGCCACTGCATAAATGTTC 60.202 52.381 4.39 0.00 40.13 3.18
2642 2982 3.689569 GCAGAGCATAAGGATTTTCCCCT 60.690 47.826 0.00 0.00 37.19 4.79
2662 3002 5.124457 CCCCTTGTTACATGACTTCATCTTG 59.876 44.000 0.00 0.00 38.24 3.02
2669 3009 5.368256 ACATGACTTCATCTTGTGCTTTC 57.632 39.130 0.00 0.00 42.53 2.62
2676 3016 8.632679 TGACTTCATCTTGTGCTTTCTAAAATT 58.367 29.630 0.00 0.00 0.00 1.82
2714 3054 4.398044 TCTTTCAACAACTTGTCAGGGAAC 59.602 41.667 0.00 0.00 0.00 3.62
2815 3155 6.128309 GCTTTTGTGTTTCAGTTTCATGGTTT 60.128 34.615 0.00 0.00 0.00 3.27
2817 3157 6.718454 TTGTGTTTCAGTTTCATGGTTTTG 57.282 33.333 0.00 0.00 0.00 2.44
2818 3158 6.030548 TGTGTTTCAGTTTCATGGTTTTGA 57.969 33.333 0.00 0.00 0.00 2.69
2819 3159 6.638610 TGTGTTTCAGTTTCATGGTTTTGAT 58.361 32.000 0.00 0.00 0.00 2.57
2821 3161 7.920151 TGTGTTTCAGTTTCATGGTTTTGATAG 59.080 33.333 0.00 0.00 0.00 2.08
2940 3282 3.509575 GTGACTTCCCATTTGCCAACATA 59.490 43.478 0.00 0.00 0.00 2.29
2991 3333 3.194062 TCTGATGCGTTCGATAATTGCA 58.806 40.909 0.00 0.00 40.23 4.08
3039 3381 3.073062 ACAACTTCAGTGGCTTGATACCT 59.927 43.478 0.00 0.00 0.00 3.08
3148 3501 1.147557 GCAATTGCAACCATAGCGCC 61.148 55.000 25.36 0.00 41.59 6.53
3189 3542 2.439156 GCCTGCATCTCCACCACC 60.439 66.667 0.00 0.00 0.00 4.61
3208 3561 1.148310 CGATTATCATGCCACCGTCC 58.852 55.000 0.00 0.00 0.00 4.79
3209 3562 1.148310 GATTATCATGCCACCGTCCG 58.852 55.000 0.00 0.00 0.00 4.79
3217 3570 2.675423 CCACCGTCCGAGAGTCCA 60.675 66.667 0.00 0.00 0.00 4.02
3218 3571 2.567049 CACCGTCCGAGAGTCCAC 59.433 66.667 0.00 0.00 0.00 4.02
3229 3582 1.739562 GAGTCCACTTGCTCAGCCG 60.740 63.158 0.00 0.00 0.00 5.52
3247 3600 1.377725 GGACCGTCCTCGAGTACCA 60.378 63.158 12.31 0.00 39.71 3.25
3376 3729 5.393461 GGCTGCTGCTTCATGTATACTTTTT 60.393 40.000 15.64 0.00 39.59 1.94
3380 3733 5.621197 TGCTTCATGTATACTTTTTGCGT 57.379 34.783 4.17 0.00 0.00 5.24
3531 3884 6.790285 TCTCGTTACCATTTGAAGTAAACC 57.210 37.500 0.00 0.00 30.64 3.27
3599 3956 9.567776 TGAGGTAAAGTGAATCAGATTTTGTTA 57.432 29.630 0.00 0.00 0.00 2.41
3704 4063 7.923414 ACTAAATTCTGTCTGGTTGGTAATC 57.077 36.000 0.00 0.00 0.00 1.75
3726 4085 3.627577 CCAAATCCTTACAACCATCTCGG 59.372 47.826 0.00 0.00 42.50 4.63
3768 4127 8.321353 TGTAGATTCTAACAACAACATCCATCT 58.679 33.333 0.00 0.00 0.00 2.90
3798 4157 2.357881 CGCAGCTTCAGTGCTCCA 60.358 61.111 0.00 0.00 41.98 3.86
3895 4254 2.281762 GGCGACTTCTTATACTGTTGCG 59.718 50.000 0.00 0.00 39.86 4.85
3946 4305 3.698040 GTCAAGATACCCTACTCGGTGAA 59.302 47.826 0.00 0.00 36.56 3.18
3952 4311 0.172803 CCCTACTCGGTGAAGGTTCG 59.827 60.000 0.00 0.00 0.00 3.95
3970 4329 0.511221 CGCTTGGTCGTGTTTACAGG 59.489 55.000 0.00 0.00 0.00 4.00
4002 4361 5.846714 TCCCCAATGGAAAGGTAAAAATTCA 59.153 36.000 0.00 0.00 41.40 2.57
4003 4362 6.503570 TCCCCAATGGAAAGGTAAAAATTCAT 59.496 34.615 0.00 0.00 41.40 2.57
4004 4363 7.018049 TCCCCAATGGAAAGGTAAAAATTCATT 59.982 33.333 0.00 0.00 41.40 2.57
4005 4364 7.669304 CCCCAATGGAAAGGTAAAAATTCATTT 59.331 33.333 0.00 0.00 35.39 2.32
4066 4426 9.241317 CATACAATTTTTCACATATTCAGCTCC 57.759 33.333 0.00 0.00 0.00 4.70
4067 4427 6.633856 ACAATTTTTCACATATTCAGCTCCC 58.366 36.000 0.00 0.00 0.00 4.30
4068 4428 5.859205 ATTTTTCACATATTCAGCTCCCC 57.141 39.130 0.00 0.00 0.00 4.81
4069 4429 4.591321 TTTTCACATATTCAGCTCCCCT 57.409 40.909 0.00 0.00 0.00 4.79
4070 4430 4.591321 TTTCACATATTCAGCTCCCCTT 57.409 40.909 0.00 0.00 0.00 3.95
4071 4431 4.591321 TTCACATATTCAGCTCCCCTTT 57.409 40.909 0.00 0.00 0.00 3.11
4072 4432 3.889815 TCACATATTCAGCTCCCCTTTG 58.110 45.455 0.00 0.00 0.00 2.77
4073 4433 2.954318 CACATATTCAGCTCCCCTTTGG 59.046 50.000 0.00 0.00 0.00 3.28
4121 4481 9.856488 GTTTCATCATACACTAGAACTGAACTA 57.144 33.333 0.00 0.00 0.00 2.24
4124 4484 8.138074 TCATCATACACTAGAACTGAACTATGC 58.862 37.037 0.00 0.00 0.00 3.14
4127 4487 2.860735 CACTAGAACTGAACTATGCGCC 59.139 50.000 4.18 0.00 0.00 6.53
4151 4511 1.944024 CAACAGGTACTTGCGGTGAAA 59.056 47.619 4.65 0.00 34.60 2.69
4167 4527 4.143030 CGGTGAAAAAGATAGACAGTGCTG 60.143 45.833 0.00 0.00 0.00 4.41
4304 4664 3.653344 TCTTGTATATGAGCACATCGGC 58.347 45.455 0.00 0.00 37.87 5.54
4307 4667 3.130633 TGTATATGAGCACATCGGCAAC 58.869 45.455 0.00 0.00 37.87 4.17
4382 4742 1.375523 GAACGCCCGTGTGAGGATT 60.376 57.895 0.00 0.00 0.00 3.01
4422 4782 4.573900 AGCTTTGGAGTATGTTGTCTCAG 58.426 43.478 0.00 0.00 32.93 3.35
4436 4796 8.759481 ATGTTGTCTCAGAGATCTACTGAATA 57.241 34.615 19.07 11.53 42.58 1.75
4450 4810 9.717942 GATCTACTGAATAATAGTGCCTTTCAT 57.282 33.333 0.00 0.00 0.00 2.57
4471 4831 2.575532 TCTGCACTTTTCTGGTGAAGG 58.424 47.619 0.00 0.00 39.96 3.46
4555 4915 6.001460 CCCTGTTGTACATAGAAACCTCAAA 58.999 40.000 0.00 0.00 0.00 2.69
4630 4990 1.000938 CTTGCTGCCTTCTCACCAAAC 60.001 52.381 0.00 0.00 0.00 2.93
4654 5014 5.068460 CCCTGAGAGAGAGGTAAGTAACATG 59.932 48.000 0.00 0.00 0.00 3.21
4666 5026 7.272978 AGGTAAGTAACATGGTAGCAACATAG 58.727 38.462 0.00 0.00 0.00 2.23
4668 5028 8.199449 GGTAAGTAACATGGTAGCAACATAGTA 58.801 37.037 0.00 0.00 0.00 1.82
4676 5036 4.471747 TGGTAGCAACATAGTACCAATGGA 59.528 41.667 6.16 0.00 42.60 3.41
4741 5101 9.533831 AGTTGGACTAAATCAGGTATCATTTTT 57.466 29.630 0.00 0.00 0.00 1.94
4776 5136 2.024414 GTTTCAACTGAGGTGCTTGGT 58.976 47.619 0.00 0.00 0.00 3.67
4803 5163 2.092429 TGGATACAGTGCCCCAGAATTC 60.092 50.000 0.00 0.00 46.17 2.17
4869 5229 6.360370 TTTGGAGTAGTGATGTTAGAGCTT 57.640 37.500 0.00 0.00 0.00 3.74
4917 5277 4.292306 AGGTACCATTTCTGACCTGGAAAT 59.708 41.667 15.94 0.00 40.86 2.17
4918 5278 5.491078 AGGTACCATTTCTGACCTGGAAATA 59.509 40.000 15.94 0.00 40.86 1.40
4934 5294 7.931948 ACCTGGAAATATGTACTATTGCTGTAC 59.068 37.037 0.00 0.00 40.27 2.90
5000 5360 2.165167 CCATTGTGTTGTGCAGATCCT 58.835 47.619 0.00 0.00 0.00 3.24
5037 5397 2.035626 CCTTGTCGGGTGGGCAAT 59.964 61.111 0.00 0.00 0.00 3.56
5065 5425 1.139816 TTCACGACATCGATGCGCTC 61.140 55.000 29.25 18.69 43.02 5.03
5080 5440 1.091771 CGCTCGCCAAGATGGTTGAT 61.092 55.000 0.00 0.00 40.46 2.57
5119 5479 1.859302 ACCCTGCGAAATCTCTCTCT 58.141 50.000 0.00 0.00 0.00 3.10
5185 5545 6.822667 TTTCTTTTCTCTCATGCTGCATAA 57.177 33.333 15.78 0.00 0.00 1.90
5275 5649 4.785376 ACCCCTGTCAATCTCAAAGTAGAT 59.215 41.667 0.00 0.00 37.84 1.98
5276 5650 5.251700 ACCCCTGTCAATCTCAAAGTAGATT 59.748 40.000 0.00 0.00 45.07 2.40
5277 5651 6.443849 ACCCCTGTCAATCTCAAAGTAGATTA 59.556 38.462 0.00 0.00 42.90 1.75
5278 5652 7.127955 ACCCCTGTCAATCTCAAAGTAGATTAT 59.872 37.037 0.00 0.00 42.90 1.28
5279 5653 7.443575 CCCCTGTCAATCTCAAAGTAGATTATG 59.556 40.741 0.00 0.00 42.90 1.90
5280 5654 7.989741 CCCTGTCAATCTCAAAGTAGATTATGT 59.010 37.037 0.00 0.00 42.90 2.29
5281 5655 9.388506 CCTGTCAATCTCAAAGTAGATTATGTT 57.611 33.333 0.00 0.00 42.90 2.71
5283 5657 9.942850 TGTCAATCTCAAAGTAGATTATGTTGA 57.057 29.630 0.00 0.00 42.90 3.18
5386 5768 1.550130 CCCTTCTGTAGCCGGAACCA 61.550 60.000 5.05 0.00 32.51 3.67
5398 5780 4.573162 GAACCAGAGTTCCGTCCG 57.427 61.111 0.00 0.00 45.65 4.79
5551 5933 2.677875 GGCCAAACCTCCTGCCAG 60.678 66.667 0.00 0.00 43.46 4.85
5555 5937 0.257039 CCAAACCTCCTGCCAGCTAT 59.743 55.000 0.00 0.00 0.00 2.97
5585 5970 7.331440 CCAGAGCTGTATCAGAACATATCATTC 59.669 40.741 0.00 0.00 32.44 2.67
5621 6006 8.911247 AGTTTGTGTTCAGTTTTTACTTCATC 57.089 30.769 0.00 0.00 0.00 2.92
5670 6055 9.461312 TTCAGCTTATCTGTTTGTACCAAATAT 57.539 29.630 0.00 0.00 43.32 1.28
5671 6056 8.892723 TCAGCTTATCTGTTTGTACCAAATATG 58.107 33.333 0.00 0.00 43.32 1.78
5715 6100 9.810545 GGCTTGTATAGATATAGGATTCTGTTC 57.189 37.037 0.00 0.00 0.00 3.18
5891 6276 4.737855 AGCTTGTCACGTCCTAACATAT 57.262 40.909 0.00 0.00 0.00 1.78
5892 6277 5.847111 AGCTTGTCACGTCCTAACATATA 57.153 39.130 0.00 0.00 0.00 0.86
5893 6278 5.589192 AGCTTGTCACGTCCTAACATATAC 58.411 41.667 0.00 0.00 0.00 1.47
5952 6339 4.152938 CGTCTGAGCACATCATCTTTTGAA 59.847 41.667 0.00 0.00 38.03 2.69
5958 6345 4.740268 GCACATCATCTTTTGAATGCTCA 58.260 39.130 7.55 0.00 42.79 4.26
6007 6394 4.837972 TGTTTTCTTTCTTTTGTTGGGGG 58.162 39.130 0.00 0.00 0.00 5.40
6015 6402 3.783239 TTTGTTGGGGGCTTGGGGG 62.783 63.158 0.00 0.00 0.00 5.40
6056 6443 5.068234 TCAACGTTTCGAATCCTGATACT 57.932 39.130 0.00 0.00 0.00 2.12
6057 6444 6.198650 TCAACGTTTCGAATCCTGATACTA 57.801 37.500 0.00 0.00 0.00 1.82
6058 6445 6.802608 TCAACGTTTCGAATCCTGATACTAT 58.197 36.000 0.00 0.00 0.00 2.12
6098 6490 1.072648 CGGACCAAACCCTTGACCTTA 59.927 52.381 0.00 0.00 34.14 2.69
6105 6497 0.404426 ACCCTTGACCTTAAGCCCAC 59.596 55.000 0.00 0.00 0.00 4.61
6109 6501 0.887387 TTGACCTTAAGCCCACGCAC 60.887 55.000 0.00 0.00 37.52 5.34
6111 6503 3.799755 CCTTAAGCCCACGCACGC 61.800 66.667 0.00 0.00 37.52 5.34
6130 6522 3.197434 GCTGAACGACCAATAACCAAC 57.803 47.619 0.00 0.00 0.00 3.77
6131 6523 2.812011 GCTGAACGACCAATAACCAACT 59.188 45.455 0.00 0.00 0.00 3.16
6132 6524 3.252458 GCTGAACGACCAATAACCAACTT 59.748 43.478 0.00 0.00 0.00 2.66
6133 6525 4.261447 GCTGAACGACCAATAACCAACTTT 60.261 41.667 0.00 0.00 0.00 2.66
6134 6526 5.735070 GCTGAACGACCAATAACCAACTTTT 60.735 40.000 0.00 0.00 0.00 2.27
6135 6527 6.210287 TGAACGACCAATAACCAACTTTTT 57.790 33.333 0.00 0.00 0.00 1.94
6136 6528 6.267070 TGAACGACCAATAACCAACTTTTTC 58.733 36.000 0.00 0.00 0.00 2.29
6137 6529 4.851010 ACGACCAATAACCAACTTTTTCG 58.149 39.130 0.00 0.00 0.00 3.46
6138 6530 4.575645 ACGACCAATAACCAACTTTTTCGA 59.424 37.500 0.00 0.00 0.00 3.71
6139 6531 5.239963 ACGACCAATAACCAACTTTTTCGAT 59.760 36.000 0.00 0.00 0.00 3.59
6140 6532 6.427547 ACGACCAATAACCAACTTTTTCGATA 59.572 34.615 0.00 0.00 0.00 2.92
6146 6538 9.418045 CAATAACCAACTTTTTCGATAACCAAT 57.582 29.630 0.00 0.00 0.00 3.16
6152 6544 7.312899 CAACTTTTTCGATAACCAATTAGGCT 58.687 34.615 0.00 0.00 43.14 4.58
6161 6553 2.356135 ACCAATTAGGCTAGCAACACG 58.644 47.619 18.24 0.00 43.14 4.49
6165 6557 2.536761 TTAGGCTAGCAACACGTTGT 57.463 45.000 18.24 1.90 42.31 3.32
6168 6560 0.941542 GGCTAGCAACACGTTGTGAA 59.058 50.000 18.24 0.00 42.31 3.18
6177 6569 7.795431 AGCAACACGTTGTGAATTATTAATG 57.205 32.000 11.33 0.00 42.31 1.90
6179 6571 6.804295 GCAACACGTTGTGAATTATTAATGGA 59.196 34.615 11.33 0.00 42.31 3.41
6256 6650 6.727569 AACTTCGACGTTTAGAATTTTTGC 57.272 33.333 0.74 0.00 0.00 3.68
6258 6652 3.801293 TCGACGTTTAGAATTTTTGCCG 58.199 40.909 0.00 0.00 0.00 5.69
6276 6670 2.002586 CCGCGAATGAACTGATGAACT 58.997 47.619 8.23 0.00 0.00 3.01
6278 6672 2.667969 CGCGAATGAACTGATGAACTGA 59.332 45.455 0.00 0.00 0.00 3.41
6284 6678 2.288825 TGAACTGATGAACTGACGGTCC 60.289 50.000 5.55 0.00 0.00 4.46
6285 6679 1.338107 ACTGATGAACTGACGGTCCA 58.662 50.000 5.55 0.00 0.00 4.02
6315 6717 9.428097 GATGAAAATTTAAACAAGAAGCCTCAT 57.572 29.630 0.00 0.00 0.00 2.90
6316 6718 8.816640 TGAAAATTTAAACAAGAAGCCTCATC 57.183 30.769 0.00 0.00 0.00 2.92
6332 6734 2.860735 CTCATCGGCTCGGTTTTCTAAG 59.139 50.000 0.00 0.00 0.00 2.18
6343 6745 5.368145 TCGGTTTTCTAAGCTATGCATGAT 58.632 37.500 10.16 0.00 0.00 2.45
6347 6749 6.072452 GGTTTTCTAAGCTATGCATGATACCC 60.072 42.308 10.16 0.00 0.00 3.69
6348 6750 4.826274 TCTAAGCTATGCATGATACCCC 57.174 45.455 10.16 0.00 0.00 4.95
6349 6751 2.479566 AAGCTATGCATGATACCCCG 57.520 50.000 10.16 0.00 0.00 5.73
6351 6753 1.026718 GCTATGCATGATACCCCGCC 61.027 60.000 10.16 0.00 0.00 6.13
6353 6755 1.130678 TATGCATGATACCCCGCCCA 61.131 55.000 10.16 0.00 0.00 5.36
6355 6757 2.113139 CATGATACCCCGCCCACC 59.887 66.667 0.00 0.00 0.00 4.61
6358 6760 3.557290 GATACCCCGCCCACCCTC 61.557 72.222 0.00 0.00 0.00 4.30
6364 6766 4.760047 CCGCCCACCCTCTGTTCG 62.760 72.222 0.00 0.00 0.00 3.95
6392 6801 1.336440 CAAATTGTTCCACTGCGTCCA 59.664 47.619 0.00 0.00 0.00 4.02
6393 6802 0.951558 AATTGTTCCACTGCGTCCAC 59.048 50.000 0.00 0.00 0.00 4.02
6395 6804 3.041940 GTTCCACTGCGTCCACGG 61.042 66.667 0.55 0.00 40.23 4.94
6396 6805 3.228017 TTCCACTGCGTCCACGGA 61.228 61.111 0.55 0.00 40.23 4.69
6397 6806 2.579657 TTCCACTGCGTCCACGGAT 61.580 57.895 0.55 0.00 39.39 4.18
6398 6807 2.779951 TTCCACTGCGTCCACGGATG 62.780 60.000 0.55 0.57 39.39 3.51
6406 6815 1.574428 GTCCACGGATGCACACAAC 59.426 57.895 0.00 0.00 0.00 3.32
6417 6826 3.383620 TGCACACAACCCAAATCATTC 57.616 42.857 0.00 0.00 0.00 2.67
6486 6898 5.616488 ACCGGTATGTTTTGAATGTGTAC 57.384 39.130 4.49 0.00 0.00 2.90
6527 6939 9.682465 ATTTCTCTACCTAAAATTGGAGGTAAC 57.318 33.333 15.97 0.00 45.54 2.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 38 0.615331 ACGGGCATGAGTGAATGACT 59.385 50.000 0.00 0.00 35.74 3.41
46 50 2.923035 CGGGGGATAGACGGGCAT 60.923 66.667 0.00 0.00 0.00 4.40
73 77 1.396648 CATTCAACGGCGTTAGATGCA 59.603 47.619 26.32 4.39 0.00 3.96
76 80 1.014352 GCCATTCAACGGCGTTAGAT 58.986 50.000 26.32 18.27 40.35 1.98
77 81 2.462503 GCCATTCAACGGCGTTAGA 58.537 52.632 26.32 20.68 40.35 2.10
83 87 2.126888 CACACGCCATTCAACGGC 60.127 61.111 0.00 0.00 46.62 5.68
84 88 1.911293 CTCCACACGCCATTCAACGG 61.911 60.000 0.00 0.00 0.00 4.44
88 92 1.302431 CACCTCCACACGCCATTCA 60.302 57.895 0.00 0.00 0.00 2.57
115 119 5.307976 TCCGATTGAATCCCATAAGATCTGT 59.692 40.000 0.00 0.00 0.00 3.41
148 152 6.940867 AGATTGTATCCATGAAGATCCACATG 59.059 38.462 17.46 17.46 42.12 3.21
149 153 7.087895 AGATTGTATCCATGAAGATCCACAT 57.912 36.000 0.00 0.00 0.00 3.21
180 184 6.269315 TGCAACACGAAGACACAATTAAAAT 58.731 32.000 0.00 0.00 0.00 1.82
210 217 7.156000 CACTGATGAAGAGAAGCATAGATCAT 58.844 38.462 0.00 0.00 0.00 2.45
241 248 3.367992 TGATCAACGCAGCAAAACATT 57.632 38.095 0.00 0.00 0.00 2.71
258 265 5.365605 TCATCGTACTAAGACCCCAAATGAT 59.634 40.000 0.00 0.00 0.00 2.45
275 282 2.826128 AGCCAGTCAAGAAGTCATCGTA 59.174 45.455 0.00 0.00 0.00 3.43
328 335 1.528824 CATCATCGCCTGACCCCTT 59.471 57.895 0.00 0.00 36.48 3.95
329 336 2.446848 CCATCATCGCCTGACCCCT 61.447 63.158 0.00 0.00 36.48 4.79
330 337 2.111878 CCATCATCGCCTGACCCC 59.888 66.667 0.00 0.00 36.48 4.95
429 437 6.229936 TGTCATGGTAGTACAAGGAATACC 57.770 41.667 2.04 2.04 38.53 2.73
432 440 7.402054 TCATTTGTCATGGTAGTACAAGGAAT 58.598 34.615 2.06 0.00 34.80 3.01
478 486 2.065899 ATTCTCTGACCCTCTCTCGG 57.934 55.000 0.00 0.00 0.00 4.63
540 548 1.104577 CGGCTAGAGAGGACCAGGTC 61.105 65.000 11.70 11.70 0.00 3.85
569 853 6.145371 GCCACAAGCTTTAAATCAAAATTCGA 59.855 34.615 0.00 0.00 38.99 3.71
593 877 3.441572 AGACACAAAAGGCACATCTATGC 59.558 43.478 0.00 0.00 45.34 3.14
594 878 6.741992 TTAGACACAAAAGGCACATCTATG 57.258 37.500 0.00 0.00 0.00 2.23
595 879 6.151144 GGTTTAGACACAAAAGGCACATCTAT 59.849 38.462 0.00 0.00 0.00 1.98
596 880 5.472137 GGTTTAGACACAAAAGGCACATCTA 59.528 40.000 0.00 0.00 0.00 1.98
597 881 4.278419 GGTTTAGACACAAAAGGCACATCT 59.722 41.667 0.00 0.00 0.00 2.90
598 882 4.546570 GGTTTAGACACAAAAGGCACATC 58.453 43.478 0.00 0.00 0.00 3.06
599 883 3.320826 GGGTTTAGACACAAAAGGCACAT 59.679 43.478 0.00 0.00 0.00 3.21
608 904 7.537596 AAAATGATCATGGGTTTAGACACAA 57.462 32.000 9.46 0.00 43.67 3.33
658 959 2.895424 AACGAGCTGTTGGAGGGGG 61.895 63.158 0.00 0.00 40.00 5.40
1097 1409 1.603739 AAGAAACCAAGAGGGCGGC 60.604 57.895 0.00 0.00 42.05 6.53
1100 1412 2.437413 CTACCAAGAAACCAAGAGGGC 58.563 52.381 0.00 0.00 42.05 5.19
1123 1435 1.867233 AGCATCAGACACACAACGAAC 59.133 47.619 0.00 0.00 0.00 3.95
1142 1460 3.012518 CAAGAACCCAGAGCATACCAAG 58.987 50.000 0.00 0.00 0.00 3.61
1148 1466 0.403271 ACTGCAAGAACCCAGAGCAT 59.597 50.000 0.00 0.00 37.43 3.79
1210 1528 2.432628 GACCAACCGACGAGCTGG 60.433 66.667 0.00 0.00 34.95 4.85
1333 1651 5.649395 TGCCCTCTTTAATTCTTCATCAGTG 59.351 40.000 0.00 0.00 0.00 3.66
1348 1666 2.730550 CAAATCGCTTTGCCCTCTTT 57.269 45.000 0.00 0.00 35.69 2.52
1378 1696 0.659957 GCAGCGACCAAGGATCAATC 59.340 55.000 0.00 0.00 0.00 2.67
1379 1697 0.035152 TGCAGCGACCAAGGATCAAT 60.035 50.000 0.00 0.00 0.00 2.57
1380 1698 0.035152 ATGCAGCGACCAAGGATCAA 60.035 50.000 0.00 0.00 0.00 2.57
1381 1699 0.035152 AATGCAGCGACCAAGGATCA 60.035 50.000 0.00 0.00 0.00 2.92
1382 1700 0.659957 GAATGCAGCGACCAAGGATC 59.340 55.000 0.00 0.00 0.00 3.36
1383 1701 0.254178 AGAATGCAGCGACCAAGGAT 59.746 50.000 0.00 0.00 0.00 3.24
1384 1702 0.674581 CAGAATGCAGCGACCAAGGA 60.675 55.000 0.00 0.00 0.00 3.36
1385 1703 1.651240 CCAGAATGCAGCGACCAAGG 61.651 60.000 0.00 0.00 31.97 3.61
1386 1704 0.957395 ACCAGAATGCAGCGACCAAG 60.957 55.000 0.00 0.00 31.97 3.61
1387 1705 0.537143 AACCAGAATGCAGCGACCAA 60.537 50.000 0.00 0.00 31.97 3.67
1388 1706 1.073025 AACCAGAATGCAGCGACCA 59.927 52.632 0.00 0.00 31.97 4.02
1389 1707 1.503542 CAACCAGAATGCAGCGACC 59.496 57.895 0.00 0.00 31.97 4.79
1422 1740 1.099879 CCTGCAAGAGGCTACCATGC 61.100 60.000 6.40 6.40 45.15 4.06
1423 1741 0.465097 CCCTGCAAGAGGCTACCATG 60.465 60.000 0.00 0.00 45.15 3.66
1424 1742 0.621571 TCCCTGCAAGAGGCTACCAT 60.622 55.000 0.00 0.00 45.15 3.55
1425 1743 0.840288 TTCCCTGCAAGAGGCTACCA 60.840 55.000 0.00 0.00 45.15 3.25
1427 1745 2.092699 AGATTTCCCTGCAAGAGGCTAC 60.093 50.000 0.00 0.00 45.15 3.58
1428 1746 2.171448 GAGATTTCCCTGCAAGAGGCTA 59.829 50.000 0.00 0.00 45.15 3.93
1429 1747 0.998145 AGATTTCCCTGCAAGAGGCT 59.002 50.000 0.00 0.00 45.15 4.58
1430 1748 1.064832 AGAGATTTCCCTGCAAGAGGC 60.065 52.381 0.00 0.00 41.19 4.70
1431 1749 2.026449 ACAGAGATTTCCCTGCAAGAGG 60.026 50.000 0.00 0.00 42.38 3.69
1432 1750 3.269178 GACAGAGATTTCCCTGCAAGAG 58.731 50.000 0.00 0.00 34.07 2.85
1446 1764 2.902486 AGGATGCAACTTCTGACAGAGA 59.098 45.455 5.10 0.00 0.00 3.10
1447 1765 3.331478 AGGATGCAACTTCTGACAGAG 57.669 47.619 5.10 3.11 0.00 3.35
1456 1774 6.458210 CAAAATACCTCAAAGGATGCAACTT 58.542 36.000 0.00 0.00 37.67 2.66
1458 1776 5.047377 TCCAAAATACCTCAAAGGATGCAAC 60.047 40.000 0.00 0.00 37.67 4.17
1486 1805 5.825679 AGCATACTGTTTGTACACTTTTCCA 59.174 36.000 0.00 0.00 33.45 3.53
1499 1818 2.584835 TTCTGCCCAGCATACTGTTT 57.415 45.000 0.00 0.00 42.81 2.83
1504 1823 5.368256 CAGATATTTTCTGCCCAGCATAC 57.632 43.478 0.00 0.00 45.16 2.39
1521 1848 7.831691 TTTTGTCCCAGAAATCAAACAGATA 57.168 32.000 0.00 0.00 35.39 1.98
1522 1849 6.729690 TTTTGTCCCAGAAATCAAACAGAT 57.270 33.333 0.00 0.00 39.09 2.90
1523 1850 6.154363 ACTTTTTGTCCCAGAAATCAAACAGA 59.846 34.615 8.80 0.00 34.11 3.41
1524 1851 6.340522 ACTTTTTGTCCCAGAAATCAAACAG 58.659 36.000 0.00 0.00 35.26 3.16
1525 1852 6.293004 ACTTTTTGTCCCAGAAATCAAACA 57.707 33.333 0.00 0.00 31.07 2.83
1526 1853 7.041721 AGAACTTTTTGTCCCAGAAATCAAAC 58.958 34.615 0.00 0.00 31.07 2.93
1527 1854 7.181569 AGAACTTTTTGTCCCAGAAATCAAA 57.818 32.000 0.00 0.00 0.00 2.69
1614 1941 7.617041 AGCTTAGCCAAATAAAACTAGTCAG 57.383 36.000 0.00 0.00 0.00 3.51
1615 1942 7.996098 AAGCTTAGCCAAATAAAACTAGTCA 57.004 32.000 0.00 0.00 0.00 3.41
1616 1943 9.129209 CAAAAGCTTAGCCAAATAAAACTAGTC 57.871 33.333 0.00 0.00 0.00 2.59
1617 1944 8.088365 CCAAAAGCTTAGCCAAATAAAACTAGT 58.912 33.333 0.00 0.00 0.00 2.57
1618 1945 8.088365 ACCAAAAGCTTAGCCAAATAAAACTAG 58.912 33.333 0.00 0.00 0.00 2.57
1626 1958 4.156477 TGGTACCAAAAGCTTAGCCAAAT 58.844 39.130 13.60 0.00 0.00 2.32
1678 2010 8.416329 AGTCTACAGCAACTTTGAATTGAAAAT 58.584 29.630 0.00 0.00 0.00 1.82
1715 2047 7.811236 ACAAATATGCAAAATCTTCTGTCAGTG 59.189 33.333 0.00 0.00 0.00 3.66
1752 2084 8.531146 CAGATAAGAGCAAAATAAAGGGGAAAA 58.469 33.333 0.00 0.00 0.00 2.29
1766 2098 6.653320 ACAACGGTAAAATCAGATAAGAGCAA 59.347 34.615 0.00 0.00 0.00 3.91
1794 2126 8.034058 ACTTCGTTTCAGAGAAATTCTTATGG 57.966 34.615 0.00 0.00 32.41 2.74
1799 2131 9.273016 TGATTAACTTCGTTTCAGAGAAATTCT 57.727 29.630 0.00 0.00 36.25 2.40
1847 2179 4.588528 AGAAAGGTTGCTGCAAAATAGGAA 59.411 37.500 17.80 0.00 0.00 3.36
1848 2180 4.022068 CAGAAAGGTTGCTGCAAAATAGGA 60.022 41.667 17.80 0.00 0.00 2.94
1907 2240 1.278985 TGTCAATGCCACTAGACTGGG 59.721 52.381 0.00 0.00 32.41 4.45
1922 2255 5.347635 GTGTTAGCTCATACATCGTTGTCAA 59.652 40.000 1.61 0.00 37.28 3.18
2173 2506 6.035975 GGATGTTGCCGGAAAAATTATTTCTG 59.964 38.462 5.05 11.75 35.21 3.02
2294 2629 7.843490 TGCAGATGTTATTTGTAGTTAGACC 57.157 36.000 0.00 0.00 0.00 3.85
2405 2740 6.713792 AAGACGAAGATAAAAAGTCTCAGC 57.286 37.500 0.00 0.00 40.80 4.26
2525 2865 5.393678 GGGTAATTAAATTCAGCTTCGGCAA 60.394 40.000 0.00 0.00 44.74 4.52
2534 2874 9.855021 CAGGTAAAACTGGGTAATTAAATTCAG 57.145 33.333 0.00 0.00 34.84 3.02
2547 2887 4.795962 GCACATTTCACAGGTAAAACTGGG 60.796 45.833 0.00 0.00 43.28 4.45
2598 2938 1.037030 ACATTTATGCAGTGGCCCGG 61.037 55.000 0.00 0.00 40.13 5.73
2603 2943 2.917701 TGCGAACATTTATGCAGTGG 57.082 45.000 0.00 0.00 32.73 4.00
2614 2954 2.988010 TCCTTATGCTCTGCGAACAT 57.012 45.000 0.00 1.32 0.00 2.71
2619 2959 2.291741 GGGAAAATCCTTATGCTCTGCG 59.708 50.000 0.00 0.00 36.57 5.18
2624 2964 4.337264 ACAAGGGGAAAATCCTTATGCT 57.663 40.909 0.00 0.00 42.25 3.79
2630 2970 5.016831 GTCATGTAACAAGGGGAAAATCCT 58.983 41.667 0.00 0.00 36.57 3.24
2632 2972 6.208599 TGAAGTCATGTAACAAGGGGAAAATC 59.791 38.462 0.00 0.00 0.00 2.17
2642 2982 5.764686 AGCACAAGATGAAGTCATGTAACAA 59.235 36.000 0.00 0.00 36.68 2.83
2662 3002 6.981722 TCCCTGAAAGAATTTTAGAAAGCAC 58.018 36.000 0.00 0.00 43.61 4.40
2676 3016 8.576442 GTTGTTGAAAGATAAATCCCTGAAAGA 58.424 33.333 0.00 0.00 34.07 2.52
2714 3054 4.092116 AGAGACAAAAGAAACTGGGAGG 57.908 45.455 0.00 0.00 0.00 4.30
2717 3057 5.125417 TGACAAAGAGACAAAAGAAACTGGG 59.875 40.000 0.00 0.00 0.00 4.45
2780 3120 4.574421 TGAAACACAAAAGCGAGAAGATCA 59.426 37.500 0.00 0.00 0.00 2.92
2815 3155 9.753674 AATGGGATGAAAGTAAAGAACTATCAA 57.246 29.630 0.00 0.00 37.50 2.57
2819 3159 9.120538 GCATAATGGGATGAAAGTAAAGAACTA 57.879 33.333 0.00 0.00 37.50 2.24
2821 3161 7.771183 TGCATAATGGGATGAAAGTAAAGAAC 58.229 34.615 0.00 0.00 0.00 3.01
2940 3282 4.137543 GCAGGCAAGGTATATTAGCAGTT 58.862 43.478 0.00 0.00 0.00 3.16
3039 3381 0.537188 GAATCGAGCTGAGTTCCCCA 59.463 55.000 0.00 0.00 0.00 4.96
3148 3501 6.128172 GCATATTGATAAATGAGTTCCCTCCG 60.128 42.308 0.00 0.00 36.86 4.63
3189 3542 1.148310 GGACGGTGGCATGATAATCG 58.852 55.000 0.00 0.00 0.00 3.34
3208 3561 0.735632 GCTGAGCAAGTGGACTCTCG 60.736 60.000 0.00 0.00 33.92 4.04
3209 3562 0.390998 GGCTGAGCAAGTGGACTCTC 60.391 60.000 6.82 0.00 33.92 3.20
3217 3570 4.379243 CGGTCCGGCTGAGCAAGT 62.379 66.667 6.82 0.00 41.69 3.16
3218 3571 4.379243 ACGGTCCGGCTGAGCAAG 62.379 66.667 17.28 0.00 41.69 4.01
3229 3582 0.962356 TTGGTACTCGAGGACGGTCC 60.962 60.000 21.39 19.61 40.21 4.46
3240 3593 5.983118 CCATTTGGAAAAGTTGTTGGTACTC 59.017 40.000 0.00 0.00 37.39 2.59
3247 3600 2.777114 AGGGCCATTTGGAAAAGTTGTT 59.223 40.909 6.18 0.00 37.39 2.83
3376 3729 1.444119 GAAGGCAGAACACCAACGCA 61.444 55.000 0.00 0.00 0.00 5.24
3380 3733 1.064758 ACTGTGAAGGCAGAACACCAA 60.065 47.619 0.00 0.00 39.62 3.67
3435 3788 4.689612 AGAGCACCTACAAAGTCTTTCA 57.310 40.909 0.00 0.00 0.00 2.69
3627 3986 5.691754 CCTGCAACTGTTTCATTTTTACCTC 59.308 40.000 0.00 0.00 0.00 3.85
3628 3987 5.362430 TCCTGCAACTGTTTCATTTTTACCT 59.638 36.000 0.00 0.00 0.00 3.08
3704 4063 3.627577 CCGAGATGGTTGTAAGGATTTGG 59.372 47.826 0.00 0.00 0.00 3.28
3726 4085 7.472543 AGAATCTACACACACACAAAAAGAAC 58.527 34.615 0.00 0.00 0.00 3.01
3768 4127 0.034960 AGCTGCGACAGGAGAGTCTA 60.035 55.000 8.57 0.00 38.15 2.59
3798 4157 4.115199 GAGTCCCAATGGGCCGCT 62.115 66.667 14.88 11.40 43.94 5.52
3805 4164 0.835941 CCCTCTCAGGAGTCCCAATG 59.164 60.000 5.25 0.00 37.67 2.82
3811 4170 0.671251 CATACGCCCTCTCAGGAGTC 59.329 60.000 0.00 0.00 40.71 3.36
3895 4254 1.508632 TTGTAGCAACTTGGAGCGAC 58.491 50.000 0.00 0.00 36.98 5.19
3946 4305 0.463116 AAACACGACCAAGCGAACCT 60.463 50.000 0.00 0.00 34.83 3.50
3952 4311 0.872388 CCCTGTAAACACGACCAAGC 59.128 55.000 0.00 0.00 0.00 4.01
3970 4329 3.613661 TCCATTGGGGAAATCAGCC 57.386 52.632 2.09 0.00 44.80 4.85
4030 4389 9.985730 ATGTGAAAAATTGTATGATTGTGAAGT 57.014 25.926 0.00 0.00 0.00 3.01
4044 4404 6.044682 GGGGAGCTGAATATGTGAAAAATTG 58.955 40.000 0.00 0.00 0.00 2.32
4045 4405 5.960202 AGGGGAGCTGAATATGTGAAAAATT 59.040 36.000 0.00 0.00 0.00 1.82
4049 4409 4.591321 AAGGGGAGCTGAATATGTGAAA 57.409 40.909 0.00 0.00 0.00 2.69
4052 4412 2.954318 CCAAAGGGGAGCTGAATATGTG 59.046 50.000 0.00 0.00 40.01 3.21
4077 4437 9.618890 TGATGAAACAAAATAAAAATGGTCCAA 57.381 25.926 0.00 0.00 0.00 3.53
4078 4438 9.790344 ATGATGAAACAAAATAAAAATGGTCCA 57.210 25.926 0.00 0.00 0.00 4.02
4094 4454 8.367911 AGTTCAGTTCTAGTGTATGATGAAACA 58.632 33.333 0.00 0.00 0.00 2.83
4124 4484 3.894547 AAGTACCTGTTGCCGGGCG 62.895 63.158 15.40 1.51 41.25 6.13
4127 4487 2.677003 CGCAAGTACCTGTTGCCGG 61.677 63.158 11.45 0.00 46.29 6.13
4132 4492 2.335316 TTTCACCGCAAGTACCTGTT 57.665 45.000 0.00 0.00 0.00 3.16
4139 4499 4.385825 TGTCTATCTTTTTCACCGCAAGT 58.614 39.130 0.00 0.00 0.00 3.16
4151 4511 1.912043 AGGGCAGCACTGTCTATCTTT 59.088 47.619 0.00 0.00 35.13 2.52
4167 4527 3.054361 TCCTCTTCATACAAGGAAAGGGC 60.054 47.826 0.00 0.00 36.27 5.19
4304 4664 3.246699 ACATTTCGTGTAGTGTTCCGTTG 59.753 43.478 0.00 0.00 39.91 4.10
4307 4667 3.794536 CAACATTTCGTGTAGTGTTCCG 58.205 45.455 0.00 0.00 41.14 4.30
4319 4679 4.152938 TCATCAGAGAAGTGCAACATTTCG 59.847 41.667 0.00 0.00 41.43 3.46
4422 4782 9.418045 GAAAGGCACTATTATTCAGTAGATCTC 57.582 37.037 0.00 0.00 38.49 2.75
4450 4810 2.951642 CCTTCACCAGAAAAGTGCAGAA 59.048 45.455 0.00 0.00 31.14 3.02
4471 4831 7.277319 GGTTAGCAGTACACTGTTATAAGTTCC 59.723 40.741 10.87 3.62 45.45 3.62
4526 4886 4.837093 TTCTATGTACAACAGGGGGAAG 57.163 45.455 0.00 0.00 0.00 3.46
4528 4888 3.264964 GGTTTCTATGTACAACAGGGGGA 59.735 47.826 0.00 0.00 0.00 4.81
4532 4892 7.390440 TGATTTGAGGTTTCTATGTACAACAGG 59.610 37.037 0.00 0.00 0.00 4.00
4630 4990 4.601084 TGTTACTTACCTCTCTCTCAGGG 58.399 47.826 0.00 0.00 35.01 4.45
4654 5014 5.031066 TCCATTGGTACTATGTTGCTACC 57.969 43.478 1.86 0.00 0.00 3.18
4741 5101 5.814705 CAGTTGAAACCTGGCAAAACATAAA 59.185 36.000 0.00 0.00 0.00 1.40
4776 5136 1.004277 GGGGCACTGTATCCAAGTGAA 59.996 52.381 7.72 0.00 35.75 3.18
4803 5163 1.665679 GTATGTGTTCCTGACATGGCG 59.334 52.381 0.00 0.00 41.10 5.69
4965 5325 4.571580 ACACAATGGTTCAAATTGCAACAG 59.428 37.500 0.00 0.00 38.36 3.16
5000 5360 0.613292 GACTGCTCTGACCTCTCCCA 60.613 60.000 0.00 0.00 0.00 4.37
5037 5397 2.835701 GATGTCGTGAAGCTGCGGGA 62.836 60.000 0.00 0.00 0.00 5.14
5065 5425 3.173540 TGGATCAACCATCTTGGCG 57.826 52.632 0.00 0.00 44.64 5.69
5107 5467 2.855370 GGCGAAACGAGAGAGAGATTTC 59.145 50.000 0.00 0.00 0.00 2.17
5119 5479 1.193644 CGATTATGTCGGCGAAACGA 58.806 50.000 12.92 0.00 46.47 3.85
5185 5545 0.994247 TGGACAGATGTTGATGGCCT 59.006 50.000 3.32 0.00 45.61 5.19
5227 5587 7.226128 GTGAATGATCAGATTGCTAGTGAATGA 59.774 37.037 0.09 0.00 35.88 2.57
5275 5649 7.630082 AGCCACTACTTTTCCTATCAACATAA 58.370 34.615 0.00 0.00 0.00 1.90
5276 5650 7.195374 AGCCACTACTTTTCCTATCAACATA 57.805 36.000 0.00 0.00 0.00 2.29
5277 5651 6.067217 AGCCACTACTTTTCCTATCAACAT 57.933 37.500 0.00 0.00 0.00 2.71
5278 5652 5.499004 AGCCACTACTTTTCCTATCAACA 57.501 39.130 0.00 0.00 0.00 3.33
5279 5653 7.048512 ACATAGCCACTACTTTTCCTATCAAC 58.951 38.462 0.00 0.00 0.00 3.18
5280 5654 7.195374 ACATAGCCACTACTTTTCCTATCAA 57.805 36.000 0.00 0.00 0.00 2.57
5281 5655 6.808321 ACATAGCCACTACTTTTCCTATCA 57.192 37.500 0.00 0.00 0.00 2.15
5282 5656 7.272978 TCAACATAGCCACTACTTTTCCTATC 58.727 38.462 0.00 0.00 0.00 2.08
5283 5657 7.195374 TCAACATAGCCACTACTTTTCCTAT 57.805 36.000 0.00 0.00 0.00 2.57
5284 5658 6.614694 TCAACATAGCCACTACTTTTCCTA 57.385 37.500 0.00 0.00 0.00 2.94
5285 5659 5.499004 TCAACATAGCCACTACTTTTCCT 57.501 39.130 0.00 0.00 0.00 3.36
5286 5660 9.726438 ATATATCAACATAGCCACTACTTTTCC 57.274 33.333 0.00 0.00 0.00 3.13
5386 5768 2.754658 ATCGGCGGACGGAACTCT 60.755 61.111 7.21 0.00 44.45 3.24
5398 5780 3.183776 GACGACCTCGGAGATCGGC 62.184 68.421 24.59 19.40 34.96 5.54
5551 5933 6.090483 TCTGATACAGCTCTGGTTTATAGC 57.910 41.667 1.66 0.00 36.48 2.97
5555 5937 5.738619 TGTTCTGATACAGCTCTGGTTTA 57.261 39.130 1.66 0.00 34.19 2.01
5585 5970 7.715265 ACTGAACACAAACTAATACTCACAG 57.285 36.000 0.00 0.00 0.00 3.66
5617 6002 5.721480 TCCTGAAATACCAGACAGAAGATGA 59.279 40.000 0.00 0.00 36.29 2.92
5621 6006 4.081198 AGCTCCTGAAATACCAGACAGAAG 60.081 45.833 0.00 0.00 36.29 2.85
5670 6055 1.339610 CCGTTCACAAAATTCCCAGCA 59.660 47.619 0.00 0.00 0.00 4.41
5671 6056 1.934849 GCCGTTCACAAAATTCCCAGC 60.935 52.381 0.00 0.00 0.00 4.85
5756 6141 6.122277 ACTTGTCACAAATCCTTTTCTCTCA 58.878 36.000 0.00 0.00 0.00 3.27
5891 6276 9.431887 ACGCAATTAGTTTGAAAGAAGATAGTA 57.568 29.630 0.00 0.00 37.53 1.82
5892 6277 8.230486 CACGCAATTAGTTTGAAAGAAGATAGT 58.770 33.333 0.00 0.00 37.53 2.12
5893 6278 7.217070 GCACGCAATTAGTTTGAAAGAAGATAG 59.783 37.037 0.00 0.00 37.53 2.08
5952 6339 7.176165 CCTTCAACATCACCAATATATGAGCAT 59.824 37.037 0.00 0.00 0.00 3.79
5957 6344 6.713903 AGAGCCTTCAACATCACCAATATATG 59.286 38.462 0.00 0.00 0.00 1.78
5958 6345 6.845908 AGAGCCTTCAACATCACCAATATAT 58.154 36.000 0.00 0.00 0.00 0.86
6015 6402 1.936547 GAGCAACACATCGAAGATCCC 59.063 52.381 0.00 0.00 45.12 3.85
6031 6418 1.798223 CAGGATTCGAAACGTTGAGCA 59.202 47.619 0.00 0.00 0.00 4.26
6056 6443 5.356470 CCGGTCCGGTTTTAAAAACCATATA 59.644 40.000 23.02 0.00 42.73 0.86
6057 6444 4.158209 CCGGTCCGGTTTTAAAAACCATAT 59.842 41.667 23.02 0.00 42.73 1.78
6058 6445 3.505293 CCGGTCCGGTTTTAAAAACCATA 59.495 43.478 23.02 0.00 42.73 2.74
6084 6471 1.501604 TGGGCTTAAGGTCAAGGGTTT 59.498 47.619 4.29 0.00 0.00 3.27
6098 6490 4.927782 TTCAGCGTGCGTGGGCTT 62.928 61.111 0.00 0.00 37.41 4.35
6105 6497 1.348538 TATTGGTCGTTCAGCGTGCG 61.349 55.000 0.00 0.00 42.13 5.34
6109 6501 1.434555 TGGTTATTGGTCGTTCAGCG 58.565 50.000 0.00 0.00 43.01 5.18
6111 6503 5.432885 AAAGTTGGTTATTGGTCGTTCAG 57.567 39.130 0.00 0.00 0.00 3.02
6116 6508 5.098218 TCGAAAAAGTTGGTTATTGGTCG 57.902 39.130 0.00 0.00 0.00 4.79
6125 6517 7.599171 CCTAATTGGTTATCGAAAAAGTTGGT 58.401 34.615 0.00 0.00 0.00 3.67
6126 6518 6.530181 GCCTAATTGGTTATCGAAAAAGTTGG 59.470 38.462 0.00 0.00 38.35 3.77
6127 6519 7.312899 AGCCTAATTGGTTATCGAAAAAGTTG 58.687 34.615 0.00 0.00 38.35 3.16
6128 6520 7.462571 AGCCTAATTGGTTATCGAAAAAGTT 57.537 32.000 0.00 0.00 38.35 2.66
6129 6521 7.201705 GCTAGCCTAATTGGTTATCGAAAAAGT 60.202 37.037 2.29 0.00 38.35 2.66
6130 6522 7.132863 GCTAGCCTAATTGGTTATCGAAAAAG 58.867 38.462 2.29 0.00 38.35 2.27
6131 6523 6.600032 TGCTAGCCTAATTGGTTATCGAAAAA 59.400 34.615 13.29 0.00 38.35 1.94
6132 6524 6.116806 TGCTAGCCTAATTGGTTATCGAAAA 58.883 36.000 13.29 0.00 38.35 2.29
6133 6525 5.676552 TGCTAGCCTAATTGGTTATCGAAA 58.323 37.500 13.29 0.00 38.35 3.46
6134 6526 5.284861 TGCTAGCCTAATTGGTTATCGAA 57.715 39.130 13.29 0.00 38.35 3.71
6135 6527 4.948341 TGCTAGCCTAATTGGTTATCGA 57.052 40.909 13.29 0.00 38.35 3.59
6136 6528 4.814234 TGTTGCTAGCCTAATTGGTTATCG 59.186 41.667 13.29 0.00 38.35 2.92
6137 6529 5.277345 CGTGTTGCTAGCCTAATTGGTTATC 60.277 44.000 13.29 0.00 38.35 1.75
6138 6530 4.574828 CGTGTTGCTAGCCTAATTGGTTAT 59.425 41.667 13.29 0.00 38.35 1.89
6139 6531 3.936453 CGTGTTGCTAGCCTAATTGGTTA 59.064 43.478 13.29 0.00 38.35 2.85
6140 6532 2.747446 CGTGTTGCTAGCCTAATTGGTT 59.253 45.455 13.29 0.00 38.35 3.67
6146 6538 2.139917 CACAACGTGTTGCTAGCCTAA 58.860 47.619 13.29 0.00 44.03 2.69
6152 6544 7.965655 CCATTAATAATTCACAACGTGTTGCTA 59.034 33.333 12.42 0.00 44.03 3.49
6190 6582 7.094805 GGCCAAATCAAATGAGAGCGTATAATA 60.095 37.037 0.00 0.00 0.00 0.98
6199 6591 7.443259 AAAAATTGGCCAAATCAAATGAGAG 57.557 32.000 24.71 0.00 0.00 3.20
6231 6625 7.536281 GGCAAAAATTCTAAACGTCGAAGTTAT 59.464 33.333 17.05 9.93 33.41 1.89
6238 6632 2.337352 GCGGCAAAAATTCTAAACGTCG 59.663 45.455 0.00 0.00 0.00 5.12
6242 6636 4.619336 TCATTCGCGGCAAAAATTCTAAAC 59.381 37.500 6.13 0.00 0.00 2.01
6249 6643 2.030363 TCAGTTCATTCGCGGCAAAAAT 60.030 40.909 6.13 0.00 0.00 1.82
6256 6650 2.002586 AGTTCATCAGTTCATTCGCGG 58.997 47.619 6.13 0.00 0.00 6.46
6258 6652 3.482598 CGTCAGTTCATCAGTTCATTCGC 60.483 47.826 0.00 0.00 0.00 4.70
6284 6678 8.003784 GCTTCTTGTTTAAATTTTCATCGGTTG 58.996 33.333 0.00 0.00 0.00 3.77
6285 6679 7.170828 GGCTTCTTGTTTAAATTTTCATCGGTT 59.829 33.333 0.00 0.00 0.00 4.44
6289 6683 8.816640 TGAGGCTTCTTGTTTAAATTTTCATC 57.183 30.769 0.00 0.00 0.00 2.92
6290 6684 9.428097 GATGAGGCTTCTTGTTTAAATTTTCAT 57.572 29.630 0.00 0.00 0.00 2.57
6315 6717 0.606604 AGCTTAGAAAACCGAGCCGA 59.393 50.000 0.00 0.00 35.79 5.54
6316 6718 2.288961 TAGCTTAGAAAACCGAGCCG 57.711 50.000 0.00 0.00 35.79 5.52
6319 6721 4.811024 TCATGCATAGCTTAGAAAACCGAG 59.189 41.667 0.00 0.00 0.00 4.63
6332 6734 1.026718 GGCGGGGTATCATGCATAGC 61.027 60.000 0.00 0.00 35.06 2.97
6347 6749 4.760047 CGAACAGAGGGTGGGCGG 62.760 72.222 0.00 0.00 0.00 6.13
6351 6753 0.882927 TTTTCGCGAACAGAGGGTGG 60.883 55.000 23.33 0.00 0.00 4.61
6353 6755 0.942252 GTTTTTCGCGAACAGAGGGT 59.058 50.000 23.33 0.00 0.00 4.34
6355 6757 2.748461 TTGTTTTTCGCGAACAGAGG 57.252 45.000 23.33 0.00 38.17 3.69
6358 6760 4.753516 ACAATTTGTTTTTCGCGAACAG 57.246 36.364 23.33 7.87 38.17 3.16
6360 6762 4.031878 TGGAACAATTTGTTTTTCGCGAAC 59.968 37.500 23.33 12.14 41.28 3.95
6362 6764 3.548268 GTGGAACAATTTGTTTTTCGCGA 59.452 39.130 15.54 3.71 44.16 5.87
6364 6766 4.781883 GCAGTGGAACAATTTGTTTTTCGC 60.782 41.667 15.54 13.73 44.16 4.70
6365 6767 4.547966 CGCAGTGGAACAATTTGTTTTTCG 60.548 41.667 15.54 9.88 44.16 3.46
6366 6768 4.328712 ACGCAGTGGAACAATTTGTTTTTC 59.671 37.500 15.54 9.42 44.16 2.29
6392 6801 0.753479 TTTGGGTTGTGTGCATCCGT 60.753 50.000 0.00 0.00 35.76 4.69
6393 6802 0.602562 ATTTGGGTTGTGTGCATCCG 59.397 50.000 0.00 0.00 35.76 4.18
6395 6804 3.598019 ATGATTTGGGTTGTGTGCATC 57.402 42.857 0.00 0.00 0.00 3.91
6396 6805 3.579586 AGAATGATTTGGGTTGTGTGCAT 59.420 39.130 0.00 0.00 0.00 3.96
6397 6806 2.964464 AGAATGATTTGGGTTGTGTGCA 59.036 40.909 0.00 0.00 0.00 4.57
6398 6807 3.665745 AGAATGATTTGGGTTGTGTGC 57.334 42.857 0.00 0.00 0.00 4.57
6399 6808 5.199024 TGAAGAATGATTTGGGTTGTGTG 57.801 39.130 0.00 0.00 0.00 3.82
6406 6815 9.880157 AACATTAGAAATGAAGAATGATTTGGG 57.120 29.630 6.64 0.00 0.00 4.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.