Multiple sequence alignment - TraesCS7B01G291700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G291700 chr7B 100.000 7991 0 0 1 7991 528726920 528734910 0.000000e+00 14757.0
1 TraesCS7B01G291700 chr7B 94.366 710 32 5 6808 7515 528406359 528407062 0.000000e+00 1083.0
2 TraesCS7B01G291700 chr7B 84.185 607 58 13 718 1295 528405744 528406341 9.060000e-154 555.0
3 TraesCS7B01G291700 chr7B 96.382 304 3 1 1314 1609 528733419 528733722 2.000000e-135 494.0
4 TraesCS7B01G291700 chr7B 89.385 358 23 12 7159 7515 528407262 528407605 3.420000e-118 436.0
5 TraesCS7B01G291700 chr7B 88.000 275 11 3 72 324 528747815 528748089 1.010000e-78 305.0
6 TraesCS7B01G291700 chr7B 96.040 101 4 0 315 415 528404498 528404598 1.780000e-36 165.0
7 TraesCS7B01G291700 chr7B 93.478 46 3 0 7599 7644 124234927 124234882 1.440000e-07 69.4
8 TraesCS7B01G291700 chr2B 96.434 5496 171 8 1312 6803 689154722 689160196 0.000000e+00 9040.0
9 TraesCS7B01G291700 chr2B 95.918 294 12 0 1316 1609 689159903 689160196 2.020000e-130 477.0
10 TraesCS7B01G291700 chr1B 95.842 5507 207 13 1314 6809 644318511 644313016 0.000000e+00 8881.0
11 TraesCS7B01G291700 chr1D 92.456 5501 379 25 1314 6803 405106924 405101449 0.000000e+00 7827.0
12 TraesCS7B01G291700 chr1D 92.683 41 2 1 7606 7646 487035020 487035059 3.110000e-04 58.4
13 TraesCS7B01G291700 chr3D 92.350 5503 398 20 1314 6803 104350766 104356258 0.000000e+00 7808.0
14 TraesCS7B01G291700 chr3D 92.401 4882 349 16 1929 6803 605943415 605948281 0.000000e+00 6940.0
15 TraesCS7B01G291700 chr3D 92.306 4861 370 4 1314 6172 591354828 591349970 0.000000e+00 6902.0
16 TraesCS7B01G291700 chr3D 92.476 4785 341 15 2034 6811 523302505 523307277 0.000000e+00 6824.0
17 TraesCS7B01G291700 chr7D 92.347 4861 369 3 1314 6172 554230089 554234948 0.000000e+00 6913.0
18 TraesCS7B01G291700 chr7D 93.609 3583 223 4 2258 5835 596061437 596057856 0.000000e+00 5343.0
19 TraesCS7B01G291700 chr7D 91.044 1284 54 19 5 1228 500251475 500252757 0.000000e+00 1677.0
20 TraesCS7B01G291700 chr7D 87.631 954 58 26 6806 7739 500246832 500247745 0.000000e+00 1053.0
21 TraesCS7B01G291700 chr7D 80.808 891 76 42 6808 7659 500252938 500253772 1.910000e-170 610.0
22 TraesCS7B01G291700 chr7D 86.174 528 54 9 803 1313 500246309 500246834 3.260000e-153 553.0
23 TraesCS7B01G291700 chr7D 77.231 650 86 34 7303 7925 500590708 500591322 2.780000e-84 324.0
24 TraesCS7B01G291700 chr7D 87.726 277 11 4 72 326 500615325 500615600 1.300000e-77 302.0
25 TraesCS7B01G291700 chr3B 80.656 4513 823 44 2240 6732 511395242 511390760 0.000000e+00 3452.0
26 TraesCS7B01G291700 chr7A 93.197 588 35 4 411 996 566340920 566341504 0.000000e+00 859.0
27 TraesCS7B01G291700 chr7A 86.747 581 41 18 6808 7367 566131104 566131669 1.470000e-171 614.0
28 TraesCS7B01G291700 chr7A 85.294 612 56 11 718 1303 566265375 566265978 1.150000e-167 601.0
29 TraesCS7B01G291700 chr7A 85.294 612 56 11 718 1303 566282130 566282733 1.150000e-167 601.0
30 TraesCS7B01G291700 chr7A 85.294 612 56 11 718 1303 566294711 566295314 1.150000e-167 601.0
31 TraesCS7B01G291700 chr7A 85.294 612 56 11 718 1303 566305839 566306442 1.150000e-167 601.0
32 TraesCS7B01G291700 chr7A 85.294 612 56 11 718 1303 566317871 566318474 1.150000e-167 601.0
33 TraesCS7B01G291700 chr7A 85.294 612 56 11 718 1303 566330507 566331110 1.150000e-167 601.0
34 TraesCS7B01G291700 chr7A 87.600 500 29 14 6808 7298 566208559 566209034 4.220000e-152 549.0
35 TraesCS7B01G291700 chr7A 85.072 556 54 14 757 1295 566130543 566131086 2.540000e-149 540.0
36 TraesCS7B01G291700 chr7A 87.886 421 32 9 7340 7756 566131670 566132075 2.020000e-130 477.0
37 TraesCS7B01G291700 chr7A 86.726 452 19 10 5 415 566263825 566264276 1.570000e-126 464.0
38 TraesCS7B01G291700 chr7A 86.726 452 19 10 5 415 566280489 566280940 1.570000e-126 464.0
39 TraesCS7B01G291700 chr7A 86.726 452 19 10 5 415 566292786 566293237 1.570000e-126 464.0
40 TraesCS7B01G291700 chr7A 86.726 452 19 10 5 415 566304288 566304739 1.570000e-126 464.0
41 TraesCS7B01G291700 chr7A 86.726 452 19 10 5 415 566327891 566328342 1.570000e-126 464.0
42 TraesCS7B01G291700 chr7A 82.017 595 59 25 7348 7924 566273396 566273960 5.650000e-126 462.0
43 TraesCS7B01G291700 chr7A 81.681 595 60 26 7348 7924 566321641 566322204 4.400000e-122 449.0
44 TraesCS7B01G291700 chr7A 81.345 595 62 27 7348 7924 566309160 566309723 9.520000e-119 438.0
45 TraesCS7B01G291700 chr7A 85.484 434 43 11 7327 7756 566209027 566209444 1.230000e-117 435.0
46 TraesCS7B01G291700 chr7A 85.343 423 28 20 6825 7228 566295327 566295734 2.680000e-109 407.0
47 TraesCS7B01G291700 chr7A 85.343 423 28 20 6825 7228 566306455 566306862 2.680000e-109 407.0
48 TraesCS7B01G291700 chr7A 85.106 423 29 20 6825 7228 566265991 566266398 1.250000e-107 401.0
49 TraesCS7B01G291700 chr7A 77.872 705 68 46 7007 7694 566342187 566342820 2.740000e-94 357.0
50 TraesCS7B01G291700 chr7A 82.127 442 34 20 5 412 566340161 566340591 3.570000e-88 337.0
51 TraesCS7B01G291700 chr7A 88.153 287 11 10 144 415 566203895 566204173 3.600000e-83 320.0
52 TraesCS7B01G291700 chr7A 87.814 279 11 4 72 328 566527741 566528018 1.010000e-78 305.0
53 TraesCS7B01G291700 chr7A 86.667 270 17 12 6825 7088 566282746 566283002 1.700000e-71 281.0
54 TraesCS7B01G291700 chr7A 80.196 409 54 13 7303 7700 566510031 566510423 1.700000e-71 281.0
55 TraesCS7B01G291700 chr7A 85.283 265 13 7 5 243 566316114 566316378 4.790000e-62 250.0
56 TraesCS7B01G291700 chr7A 81.154 260 24 7 421 678 566264693 566264929 1.370000e-42 185.0
57 TraesCS7B01G291700 chr7A 81.154 260 24 7 421 678 566281357 566281593 1.370000e-42 185.0
58 TraesCS7B01G291700 chr7A 81.154 260 24 7 421 678 566293654 566293890 1.370000e-42 185.0
59 TraesCS7B01G291700 chr7A 81.154 260 24 7 421 678 566305156 566305392 1.370000e-42 185.0
60 TraesCS7B01G291700 chr7A 81.154 260 24 7 421 678 566328759 566328995 1.370000e-42 185.0
61 TraesCS7B01G291700 chr7A 94.792 96 3 2 7266 7361 566272400 566272493 1.800000e-31 148.0
62 TraesCS7B01G291700 chr7A 94.792 96 3 2 7266 7361 566285547 566285640 1.800000e-31 148.0
63 TraesCS7B01G291700 chr7A 94.792 96 3 2 7266 7361 566297036 566297129 1.800000e-31 148.0
64 TraesCS7B01G291700 chr7A 90.667 75 6 1 7225 7298 566350788 566350862 1.840000e-16 99.0
65 TraesCS7B01G291700 chrUn 81.681 595 60 28 7348 7924 374373796 374374359 4.400000e-122 449.0
66 TraesCS7B01G291700 chr6D 83.456 272 16 8 1 243 313016536 313016265 8.070000e-55 226.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G291700 chr7B 528726920 528734910 7990 False 7625.500000 14757 98.191000 1 7991 2 chr7B.!!$F3 7990
1 TraesCS7B01G291700 chr7B 528404498 528407605 3107 False 559.750000 1083 90.994000 315 7515 4 chr7B.!!$F2 7200
2 TraesCS7B01G291700 chr2B 689154722 689160196 5474 False 4758.500000 9040 96.176000 1312 6803 2 chr2B.!!$F1 5491
3 TraesCS7B01G291700 chr1B 644313016 644318511 5495 True 8881.000000 8881 95.842000 1314 6809 1 chr1B.!!$R1 5495
4 TraesCS7B01G291700 chr1D 405101449 405106924 5475 True 7827.000000 7827 92.456000 1314 6803 1 chr1D.!!$R1 5489
5 TraesCS7B01G291700 chr3D 104350766 104356258 5492 False 7808.000000 7808 92.350000 1314 6803 1 chr3D.!!$F1 5489
6 TraesCS7B01G291700 chr3D 605943415 605948281 4866 False 6940.000000 6940 92.401000 1929 6803 1 chr3D.!!$F3 4874
7 TraesCS7B01G291700 chr3D 591349970 591354828 4858 True 6902.000000 6902 92.306000 1314 6172 1 chr3D.!!$R1 4858
8 TraesCS7B01G291700 chr3D 523302505 523307277 4772 False 6824.000000 6824 92.476000 2034 6811 1 chr3D.!!$F2 4777
9 TraesCS7B01G291700 chr7D 554230089 554234948 4859 False 6913.000000 6913 92.347000 1314 6172 1 chr7D.!!$F3 4858
10 TraesCS7B01G291700 chr7D 596057856 596061437 3581 True 5343.000000 5343 93.609000 2258 5835 1 chr7D.!!$R1 3577
11 TraesCS7B01G291700 chr7D 500246309 500253772 7463 False 973.250000 1677 86.414250 5 7739 4 chr7D.!!$F4 7734
12 TraesCS7B01G291700 chr7D 500590708 500591322 614 False 324.000000 324 77.231000 7303 7925 1 chr7D.!!$F1 622
13 TraesCS7B01G291700 chr3B 511390760 511395242 4482 True 3452.000000 3452 80.656000 2240 6732 1 chr3B.!!$R1 4492
14 TraesCS7B01G291700 chr7A 566130543 566132075 1532 False 543.666667 614 86.568333 757 7756 3 chr7A.!!$F5 6999
15 TraesCS7B01G291700 chr7A 566340161 566342820 2659 False 517.666667 859 84.398667 5 7694 3 chr7A.!!$F14 7689
16 TraesCS7B01G291700 chr7A 566208559 566209444 885 False 492.000000 549 86.542000 6808 7756 2 chr7A.!!$F6 948
17 TraesCS7B01G291700 chr7A 566316114 566322204 6090 False 433.333333 601 84.086000 5 7924 3 chr7A.!!$F12 7919
18 TraesCS7B01G291700 chr7A 566304288 566309723 5435 False 419.000000 601 83.972400 5 7924 5 chr7A.!!$F11 7919
19 TraesCS7B01G291700 chr7A 566327891 566331110 3219 False 416.666667 601 84.391333 5 1303 3 chr7A.!!$F13 1298
20 TraesCS7B01G291700 chr7A 566263825 566266398 2573 False 412.750000 601 84.570000 5 7228 4 chr7A.!!$F7 7223
21 TraesCS7B01G291700 chr7A 566292786 566297129 4343 False 361.000000 601 86.661800 5 7361 5 chr7A.!!$F10 7356
22 TraesCS7B01G291700 chr7A 566280489 566285640 5151 False 335.800000 601 86.926600 5 7361 5 chr7A.!!$F9 7356
23 TraesCS7B01G291700 chr7A 566272400 566273960 1560 False 305.000000 462 88.404500 7266 7924 2 chr7A.!!$F8 658
24 TraesCS7B01G291700 chrUn 374373796 374374359 563 False 449.000000 449 81.681000 7348 7924 1 chrUn.!!$F1 576

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
434 7790 0.390492 CACTCTGCTGGCCATCGATA 59.610 55.000 5.51 0.00 0.00 2.92 F
452 7808 0.392461 TATGTCGCTGGGCCTGAAAC 60.392 55.000 15.36 11.08 0.00 2.78 F
2127 9847 0.380378 GCAGGTGTTGACGAAGCAAA 59.620 50.000 0.00 0.00 0.00 3.68 F
2372 10094 0.613260 AGGCATTGGTTGACTCGCTA 59.387 50.000 0.00 0.00 40.98 4.26 F
3192 10914 1.134280 CCGAGGAGCTTGGACATGATT 60.134 52.381 0.00 0.00 37.20 2.57 F
4331 12053 0.315886 TTGTATCGATACGGGCGCAT 59.684 50.000 26.12 0.00 36.06 4.73 F
5442 13165 0.172578 CAAGGTCGACGGCAGTATCA 59.827 55.000 9.92 0.00 0.00 2.15 F
6364 14097 0.603569 GATCTGGGACGATATGCCGT 59.396 55.000 0.00 0.00 43.35 5.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1255 8968 1.003696 ACCTAGTGCCTGCCTCTTTTC 59.996 52.381 0.00 0.00 0.00 2.29 R
2372 10094 1.524002 CAGACGGATGGGCAGTCAT 59.476 57.895 0.00 0.00 43.13 3.06 R
3192 10914 0.102120 CGACACCTTGGCAGCAAAAA 59.898 50.000 0.00 0.00 0.00 1.94 R
3587 11309 0.804989 GAGGAACTTTGGCATCACCG 59.195 55.000 0.00 0.00 41.55 4.94 R
5092 12815 0.314935 GTCCAGTTGCATGTGGTTGG 59.685 55.000 13.20 4.12 35.14 3.77 R
6165 13898 2.107953 GAGCTGGTGCCTCCGATC 59.892 66.667 0.00 0.00 40.80 3.69 R
6635 14375 0.040942 AGAGGCAGGCAGAGAGAAGA 59.959 55.000 0.00 0.00 0.00 2.87 R
7563 19217 0.921896 ATAAGCATGGGCACAGGTCT 59.078 50.000 1.13 0.00 44.61 3.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
30 5193 3.025322 TCTCCAAACTCAAAGCCCAAA 57.975 42.857 0.00 0.00 0.00 3.28
48 5211 0.582005 AATAAAGAATCTCGCGGCGC 59.418 50.000 24.21 24.21 0.00 6.53
66 5229 2.589442 GACGGCCCAAACGACACA 60.589 61.111 0.00 0.00 34.93 3.72
67 5230 2.888998 GACGGCCCAAACGACACAC 61.889 63.158 0.00 0.00 34.93 3.82
110 5292 1.538687 CCAAAGCCTTCCAAGCCAGG 61.539 60.000 0.00 0.00 0.00 4.45
117 5299 3.113514 TTCCAAGCCAGGCACACGA 62.114 57.895 15.80 0.00 0.00 4.35
243 5432 2.736826 CCTTCTTCCTCGAGGGCCC 61.737 68.421 30.80 16.46 35.41 5.80
244 5433 1.990060 CTTCTTCCTCGAGGGCCCA 60.990 63.158 30.80 9.24 35.41 5.36
434 7790 0.390492 CACTCTGCTGGCCATCGATA 59.610 55.000 5.51 0.00 0.00 2.92
452 7808 0.392461 TATGTCGCTGGGCCTGAAAC 60.392 55.000 15.36 11.08 0.00 2.78
470 7826 6.434028 CCTGAAACTGGGACTTCATTCATTTA 59.566 38.462 0.00 0.00 31.40 1.40
490 7846 1.172175 TGAATGCTAATTGGCGTGCA 58.828 45.000 12.43 12.43 39.83 4.57
529 7885 3.209410 CAAGTAGGGCCATGAATCAGTC 58.791 50.000 6.18 0.00 0.00 3.51
536 7892 3.508793 GGGCCATGAATCAGTCATATTGG 59.491 47.826 4.39 0.00 45.69 3.16
569 7925 9.097257 GAAAATTTGAAATCACAAACTGAAGGA 57.903 29.630 0.00 0.00 41.49 3.36
580 7936 3.884037 AACTGAAGGAGGTTGGAACAT 57.116 42.857 0.00 0.00 39.30 2.71
585 7941 4.394729 TGAAGGAGGTTGGAACATTGTAC 58.605 43.478 0.00 0.00 39.30 2.90
625 7981 5.293814 CCTGTAGCTTTCAGATCTTGTCATG 59.706 44.000 16.70 0.00 35.20 3.07
804 8173 7.361457 ACTGTATTTATGCTAGGACAAGCTA 57.639 36.000 0.00 0.00 43.19 3.32
895 8455 8.673456 AGGGGCCAAATAATTAAGAGTTTTTA 57.327 30.769 4.39 0.00 0.00 1.52
915 8479 9.349145 GTTTTTAGACAGTTGTTACATTGTGTT 57.651 29.630 7.56 0.67 0.00 3.32
955 8519 8.719648 CAGCAATATTTTCAGATACTGATCCTC 58.280 37.037 2.30 0.00 40.39 3.71
1055 8626 2.842394 AAGATCACTCACCAGGCGCG 62.842 60.000 0.00 0.00 0.00 6.86
1082 8653 1.151450 CTGGCCAGACCACCAAGTT 59.849 57.895 29.88 0.00 46.36 2.66
1255 8968 1.335964 ACACACACGTGATCTCCTTCG 60.336 52.381 25.01 2.29 46.80 3.79
1257 8970 1.611977 ACACACGTGATCTCCTTCGAA 59.388 47.619 25.01 0.00 0.00 3.71
1280 8993 1.153628 GGCAGGCACTAGGTACGTG 60.154 63.158 0.00 0.00 36.02 4.49
1290 9003 5.345702 GCACTAGGTACGTGTAAATCATCA 58.654 41.667 0.00 0.00 34.91 3.07
1295 9008 4.630069 AGGTACGTGTAAATCATCAACAGC 59.370 41.667 0.00 0.00 0.00 4.40
1303 9016 7.909641 CGTGTAAATCATCAACAGCAATCATAA 59.090 33.333 0.00 0.00 0.00 1.90
1304 9017 9.229784 GTGTAAATCATCAACAGCAATCATAAG 57.770 33.333 0.00 0.00 0.00 1.73
1309 9022 7.451501 TCATCAACAGCAATCATAAGTTTCA 57.548 32.000 0.00 0.00 0.00 2.69
1354 9067 1.006825 TTGACGCAATCACGGTCGAG 61.007 55.000 0.00 0.00 36.92 4.04
1367 9080 2.163815 ACGGTCGAGTTACAGAGGAATG 59.836 50.000 0.00 0.00 0.00 2.67
1377 9092 2.577970 ACAGAGGAATGGGAGGGATTT 58.422 47.619 0.00 0.00 0.00 2.17
1502 9220 5.681695 GCTTAAGTAGCTAGGTCGTCCATTT 60.682 44.000 0.00 0.00 46.77 2.32
1895 9615 0.744874 ACTGGATGAATGCTGCATGC 59.255 50.000 17.00 15.37 43.25 4.06
2094 9814 3.251729 TGTCTGCAGAGTCTTTCATTTGC 59.748 43.478 18.89 0.50 0.00 3.68
2127 9847 0.380378 GCAGGTGTTGACGAAGCAAA 59.620 50.000 0.00 0.00 0.00 3.68
2210 9931 3.055719 ACCGATGCCAAAGTGCCG 61.056 61.111 0.00 0.00 0.00 5.69
2214 9935 2.203480 ATGCCAAAGTGCCGTGGT 60.203 55.556 0.00 0.00 37.23 4.16
2372 10094 0.613260 AGGCATTGGTTGACTCGCTA 59.387 50.000 0.00 0.00 40.98 4.26
3192 10914 1.134280 CCGAGGAGCTTGGACATGATT 60.134 52.381 0.00 0.00 37.20 2.57
3345 11067 5.250543 TCCTTCCTTCTCATATGTGGACAAA 59.749 40.000 1.90 0.00 0.00 2.83
3368 11090 2.018515 GTTGTTTCGTGGACCCAAAGA 58.981 47.619 0.00 0.00 0.00 2.52
3460 11182 1.533625 TTCCAGCTCAAATTGGACCG 58.466 50.000 0.00 0.00 42.93 4.79
3503 11225 2.979130 GAGCGGTTATCAGTGCTCC 58.021 57.895 1.75 0.00 46.21 4.70
3564 11286 6.934645 TCCATCGAAATACTGTGTTCTTCTTT 59.065 34.615 0.00 0.00 0.00 2.52
3587 11309 2.436115 GTCTGTTAGTGGGCGGCC 60.436 66.667 23.42 23.42 0.00 6.13
3833 11555 1.002011 GGAACACTTCCCTCAGCCC 60.002 63.158 0.00 0.00 44.30 5.19
3886 11608 6.163476 TGCACTAGAATGTCGTCAATAAAGT 58.837 36.000 0.00 0.00 0.00 2.66
4128 11850 2.094494 CAGTAGCTCGTCAATGACAGGT 60.094 50.000 14.24 15.86 32.09 4.00
4331 12053 0.315886 TTGTATCGATACGGGCGCAT 59.684 50.000 26.12 0.00 36.06 4.73
4466 12188 4.586235 AGCAGGCACCGGCACTTT 62.586 61.111 14.29 0.00 43.71 2.66
4467 12189 2.671619 GCAGGCACCGGCACTTTA 60.672 61.111 0.00 0.00 43.71 1.85
5228 12951 1.227823 CTGTTGGTTGAGGGTGCGA 60.228 57.895 0.00 0.00 0.00 5.10
5275 12998 3.009115 GCCCCTCCACTGGTAGCA 61.009 66.667 0.00 0.00 0.00 3.49
5323 13046 2.040606 GTGGTAGAGGGAGGGCCA 59.959 66.667 6.18 0.00 35.15 5.36
5442 13165 0.172578 CAAGGTCGACGGCAGTATCA 59.827 55.000 9.92 0.00 0.00 2.15
6215 13948 4.221422 TGCCGGATCTAGCACCGC 62.221 66.667 5.05 14.24 46.59 5.68
6364 14097 0.603569 GATCTGGGACGATATGCCGT 59.396 55.000 0.00 0.00 43.35 5.68
6383 14116 2.279517 GATCGCCGCCGTCAGATT 60.280 61.111 0.00 0.00 35.54 2.40
6490 14227 1.229820 TGGGGAGGAAAGGCTGCTA 60.230 57.895 0.00 0.00 0.00 3.49
6553 14290 3.551890 CACGGTCGAATTACAGAGGAATG 59.448 47.826 0.00 0.00 0.00 2.67
6563 14302 5.796502 TTACAGAGGAATGGGAAGGATTT 57.203 39.130 0.00 0.00 0.00 2.17
6631 14371 4.752879 GCCGCCGCCAGTGTCTTA 62.753 66.667 0.00 0.00 0.00 2.10
6632 14372 2.509336 CCGCCGCCAGTGTCTTAG 60.509 66.667 0.00 0.00 0.00 2.18
6633 14373 2.261671 CGCCGCCAGTGTCTTAGT 59.738 61.111 0.00 0.00 0.00 2.24
6634 14374 2.094659 CGCCGCCAGTGTCTTAGTG 61.095 63.158 0.00 0.00 0.00 2.74
6635 14375 1.004918 GCCGCCAGTGTCTTAGTGT 60.005 57.895 0.00 0.00 0.00 3.55
6636 14376 1.014564 GCCGCCAGTGTCTTAGTGTC 61.015 60.000 0.00 0.00 0.00 3.67
6637 14377 0.603569 CCGCCAGTGTCTTAGTGTCT 59.396 55.000 0.00 0.00 0.00 3.41
6858 14620 0.808125 AAAACGCTGTTGCAGTGACA 59.192 45.000 15.42 0.00 43.78 3.58
6897 14659 4.693532 GGCATCACCGTGTTCAGA 57.306 55.556 0.00 0.00 0.00 3.27
6911 14673 0.976641 TTCAGATTCACGCTGGACCT 59.023 50.000 0.00 0.00 34.20 3.85
6913 14675 1.078848 AGATTCACGCTGGACCTGC 60.079 57.895 13.13 13.13 0.00 4.85
6994 14756 1.371389 GTCGGCTTCTCGTGAACGT 60.371 57.895 2.37 0.00 40.80 3.99
7098 14890 7.230712 TGTGAAAAGAGAAGGAATAGGGTTTTC 59.769 37.037 0.00 0.00 34.64 2.29
7100 14892 7.665974 TGAAAAGAGAAGGAATAGGGTTTTCTC 59.334 37.037 4.77 4.77 42.42 2.87
7141 14933 2.494059 GTGAGTGGTGTGCACTTGTAT 58.506 47.619 19.41 0.95 32.33 2.29
7158 14959 2.866156 TGTATGTTGCTAGCAGCGATTC 59.134 45.455 24.08 16.34 46.26 2.52
7229 17390 9.478238 TGTAAGGTGTATGTACAGGTTTAGATA 57.522 33.333 0.33 0.00 36.78 1.98
7381 19018 0.458025 GGTTCTACCGGCTGTTCTCG 60.458 60.000 0.00 0.00 0.00 4.04
7506 19143 3.711704 AGGTGAGGGTGGTACATCTAATG 59.288 47.826 0.00 0.00 44.52 1.90
7536 19186 1.370414 GTGTGTGCGCATTGGTGTC 60.370 57.895 15.91 0.00 0.00 3.67
7540 19190 1.965930 GTGCGCATTGGTGTCTCCA 60.966 57.895 15.91 0.00 45.60 3.86
7550 19200 0.322975 GGTGTCTCCAGTGTGCATCT 59.677 55.000 0.00 0.00 35.97 2.90
7551 19201 1.550524 GGTGTCTCCAGTGTGCATCTA 59.449 52.381 0.00 0.00 35.97 1.98
7566 19220 2.748605 CATCTAATGCGGAGGTCAGAC 58.251 52.381 0.00 0.00 0.00 3.51
7567 19221 1.112113 TCTAATGCGGAGGTCAGACC 58.888 55.000 12.25 12.25 38.99 3.85
7587 19246 1.820519 CTGTGCCCATGCTTATTGTGT 59.179 47.619 0.00 0.00 38.71 3.72
7588 19247 2.231964 CTGTGCCCATGCTTATTGTGTT 59.768 45.455 0.00 0.00 38.71 3.32
7589 19248 2.632028 TGTGCCCATGCTTATTGTGTTT 59.368 40.909 0.00 0.00 38.71 2.83
7590 19249 2.995258 GTGCCCATGCTTATTGTGTTTG 59.005 45.455 0.00 0.00 38.71 2.93
7591 19250 2.632028 TGCCCATGCTTATTGTGTTTGT 59.368 40.909 0.00 0.00 38.71 2.83
7592 19251 3.829026 TGCCCATGCTTATTGTGTTTGTA 59.171 39.130 0.00 0.00 38.71 2.41
7593 19252 4.281941 TGCCCATGCTTATTGTGTTTGTAA 59.718 37.500 0.00 0.00 38.71 2.41
7594 19253 4.625311 GCCCATGCTTATTGTGTTTGTAAC 59.375 41.667 0.00 0.00 33.53 2.50
7597 19256 6.586082 CCCATGCTTATTGTGTTTGTAACTTC 59.414 38.462 0.00 0.00 0.00 3.01
7713 19375 2.947652 CCCACTTTCCAGTATCTGCATG 59.052 50.000 0.00 0.00 0.00 4.06
7729 19391 4.696877 TCTGCATGTGGTTCTTTCTGTATG 59.303 41.667 0.00 0.00 0.00 2.39
7742 19404 4.801330 TTCTGTATGATGTGTCCTCGTT 57.199 40.909 0.00 0.00 0.00 3.85
7805 19467 0.830648 TCCTATGCAGCGCTTTAGGT 59.169 50.000 25.77 9.34 36.87 3.08
7814 19476 0.039888 GCGCTTTAGGTGCCGAAAAA 60.040 50.000 0.00 0.00 44.87 1.94
7831 19493 1.373570 AAAGATAGCTGACGCTTGCC 58.626 50.000 0.00 0.00 46.47 4.52
7871 19533 1.607612 CCCAATACGGCCACTTCCT 59.392 57.895 2.24 0.00 0.00 3.36
7872 19534 0.748005 CCCAATACGGCCACTTCCTG 60.748 60.000 2.24 0.00 0.00 3.86
7890 19562 4.072131 TCCTGCTCGCTTTATCAAGTTTT 58.928 39.130 0.00 0.00 31.86 2.43
7891 19563 4.518970 TCCTGCTCGCTTTATCAAGTTTTT 59.481 37.500 0.00 0.00 31.86 1.94
7892 19564 4.618489 CCTGCTCGCTTTATCAAGTTTTTG 59.382 41.667 0.00 0.00 35.57 2.44
7899 19575 7.901002 TCGCTTTATCAAGTTTTTGGTTTTTC 58.099 30.769 0.00 0.00 34.97 2.29
7925 19601 6.499172 GTTATTACCTACAGTACGACCTTCC 58.501 44.000 0.00 0.00 0.00 3.46
7926 19602 2.592102 ACCTACAGTACGACCTTCCA 57.408 50.000 0.00 0.00 0.00 3.53
7927 19603 2.165998 ACCTACAGTACGACCTTCCAC 58.834 52.381 0.00 0.00 0.00 4.02
7928 19604 2.165167 CCTACAGTACGACCTTCCACA 58.835 52.381 0.00 0.00 0.00 4.17
7929 19605 2.163815 CCTACAGTACGACCTTCCACAG 59.836 54.545 0.00 0.00 0.00 3.66
7930 19606 0.317479 ACAGTACGACCTTCCACAGC 59.683 55.000 0.00 0.00 0.00 4.40
7931 19607 0.317160 CAGTACGACCTTCCACAGCA 59.683 55.000 0.00 0.00 0.00 4.41
7932 19608 1.066858 CAGTACGACCTTCCACAGCAT 60.067 52.381 0.00 0.00 0.00 3.79
7933 19609 1.066858 AGTACGACCTTCCACAGCATG 60.067 52.381 0.00 0.00 46.00 4.06
7934 19610 1.067142 GTACGACCTTCCACAGCATGA 60.067 52.381 0.00 0.00 39.69 3.07
7935 19611 0.615331 ACGACCTTCCACAGCATGAT 59.385 50.000 0.00 0.00 39.69 2.45
7936 19612 1.293924 CGACCTTCCACAGCATGATC 58.706 55.000 0.00 0.00 39.69 2.92
7937 19613 1.134580 CGACCTTCCACAGCATGATCT 60.135 52.381 0.00 0.00 39.69 2.75
7938 19614 2.101415 CGACCTTCCACAGCATGATCTA 59.899 50.000 0.00 0.00 39.69 1.98
7939 19615 3.726607 GACCTTCCACAGCATGATCTAG 58.273 50.000 0.00 0.00 39.69 2.43
7940 19616 3.110705 ACCTTCCACAGCATGATCTAGT 58.889 45.455 0.00 0.00 39.69 2.57
7941 19617 3.118482 ACCTTCCACAGCATGATCTAGTG 60.118 47.826 0.00 0.00 39.69 2.74
7942 19618 3.133542 CCTTCCACAGCATGATCTAGTGA 59.866 47.826 0.00 0.00 39.69 3.41
7943 19619 4.383444 CCTTCCACAGCATGATCTAGTGAA 60.383 45.833 0.00 0.00 39.69 3.18
7944 19620 4.128925 TCCACAGCATGATCTAGTGAAC 57.871 45.455 0.00 0.00 39.69 3.18
7945 19621 3.771479 TCCACAGCATGATCTAGTGAACT 59.229 43.478 0.00 0.00 39.69 3.01
7946 19622 4.956075 TCCACAGCATGATCTAGTGAACTA 59.044 41.667 0.00 0.00 39.69 2.24
7947 19623 5.046529 CCACAGCATGATCTAGTGAACTAC 58.953 45.833 0.00 0.00 39.69 2.73
7948 19624 5.163468 CCACAGCATGATCTAGTGAACTACT 60.163 44.000 0.00 0.00 39.69 2.57
7949 19625 5.976534 CACAGCATGATCTAGTGAACTACTC 59.023 44.000 0.00 0.00 39.69 2.59
7950 19626 5.068460 ACAGCATGATCTAGTGAACTACTCC 59.932 44.000 0.00 0.00 39.69 3.85
7951 19627 4.586841 AGCATGATCTAGTGAACTACTCCC 59.413 45.833 0.00 0.00 40.89 4.30
7952 19628 4.586841 GCATGATCTAGTGAACTACTCCCT 59.413 45.833 0.00 0.00 40.89 4.20
7953 19629 5.069781 GCATGATCTAGTGAACTACTCCCTT 59.930 44.000 0.00 0.00 40.89 3.95
7954 19630 6.407525 GCATGATCTAGTGAACTACTCCCTTT 60.408 42.308 0.00 0.00 40.89 3.11
7955 19631 6.531503 TGATCTAGTGAACTACTCCCTTTG 57.468 41.667 0.00 0.00 40.89 2.77
7956 19632 6.017192 TGATCTAGTGAACTACTCCCTTTGT 58.983 40.000 0.00 0.00 40.89 2.83
7957 19633 5.979288 TCTAGTGAACTACTCCCTTTGTC 57.021 43.478 0.00 0.00 40.89 3.18
7958 19634 4.771054 TCTAGTGAACTACTCCCTTTGTCC 59.229 45.833 0.00 0.00 40.89 4.02
7959 19635 3.588569 AGTGAACTACTCCCTTTGTCCT 58.411 45.455 0.00 0.00 33.17 3.85
7960 19636 3.325135 AGTGAACTACTCCCTTTGTCCTG 59.675 47.826 0.00 0.00 33.17 3.86
7961 19637 3.323979 GTGAACTACTCCCTTTGTCCTGA 59.676 47.826 0.00 0.00 0.00 3.86
7962 19638 3.971305 TGAACTACTCCCTTTGTCCTGAA 59.029 43.478 0.00 0.00 0.00 3.02
7963 19639 4.597507 TGAACTACTCCCTTTGTCCTGAAT 59.402 41.667 0.00 0.00 0.00 2.57
7964 19640 5.073144 TGAACTACTCCCTTTGTCCTGAATT 59.927 40.000 0.00 0.00 0.00 2.17
7965 19641 6.271391 TGAACTACTCCCTTTGTCCTGAATTA 59.729 38.462 0.00 0.00 0.00 1.40
7966 19642 6.051179 ACTACTCCCTTTGTCCTGAATTAC 57.949 41.667 0.00 0.00 0.00 1.89
7967 19643 5.785940 ACTACTCCCTTTGTCCTGAATTACT 59.214 40.000 0.00 0.00 0.00 2.24
7968 19644 5.584551 ACTCCCTTTGTCCTGAATTACTT 57.415 39.130 0.00 0.00 0.00 2.24
7969 19645 5.316987 ACTCCCTTTGTCCTGAATTACTTG 58.683 41.667 0.00 0.00 0.00 3.16
7970 19646 5.163088 ACTCCCTTTGTCCTGAATTACTTGT 60.163 40.000 0.00 0.00 0.00 3.16
7971 19647 5.313712 TCCCTTTGTCCTGAATTACTTGTC 58.686 41.667 0.00 0.00 0.00 3.18
7972 19648 4.154195 CCCTTTGTCCTGAATTACTTGTCG 59.846 45.833 0.00 0.00 0.00 4.35
7973 19649 4.378459 CCTTTGTCCTGAATTACTTGTCGC 60.378 45.833 0.00 0.00 0.00 5.19
7974 19650 3.394674 TGTCCTGAATTACTTGTCGCA 57.605 42.857 0.00 0.00 0.00 5.10
7975 19651 3.325870 TGTCCTGAATTACTTGTCGCAG 58.674 45.455 0.00 0.00 0.00 5.18
7976 19652 2.094417 GTCCTGAATTACTTGTCGCAGC 59.906 50.000 0.00 0.00 0.00 5.25
7977 19653 1.398390 CCTGAATTACTTGTCGCAGCC 59.602 52.381 0.00 0.00 0.00 4.85
7978 19654 2.350522 CTGAATTACTTGTCGCAGCCT 58.649 47.619 0.00 0.00 0.00 4.58
7979 19655 2.346803 TGAATTACTTGTCGCAGCCTC 58.653 47.619 0.00 0.00 0.00 4.70
7980 19656 2.289382 TGAATTACTTGTCGCAGCCTCA 60.289 45.455 0.00 0.00 0.00 3.86
7981 19657 2.472695 ATTACTTGTCGCAGCCTCAA 57.527 45.000 0.00 0.00 0.00 3.02
7982 19658 2.248280 TTACTTGTCGCAGCCTCAAA 57.752 45.000 0.00 0.00 0.00 2.69
7983 19659 2.248280 TACTTGTCGCAGCCTCAAAA 57.752 45.000 0.00 0.00 0.00 2.44
7984 19660 1.388547 ACTTGTCGCAGCCTCAAAAA 58.611 45.000 0.00 0.00 0.00 1.94
7985 19661 1.334869 ACTTGTCGCAGCCTCAAAAAG 59.665 47.619 0.00 0.00 0.00 2.27
7986 19662 1.603802 CTTGTCGCAGCCTCAAAAAGA 59.396 47.619 0.00 0.00 0.00 2.52
7987 19663 1.674359 TGTCGCAGCCTCAAAAAGAA 58.326 45.000 0.00 0.00 0.00 2.52
7988 19664 2.020720 TGTCGCAGCCTCAAAAAGAAA 58.979 42.857 0.00 0.00 0.00 2.52
7989 19665 2.425312 TGTCGCAGCCTCAAAAAGAAAA 59.575 40.909 0.00 0.00 0.00 2.29
7990 19666 3.045688 GTCGCAGCCTCAAAAAGAAAAG 58.954 45.455 0.00 0.00 0.00 2.27
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.338249 TGAGTTTGGAGAAGCTGTATGC 58.662 45.455 0.00 0.00 43.29 3.14
1 2 5.618640 GCTTTGAGTTTGGAGAAGCTGTATG 60.619 44.000 0.00 0.00 39.56 2.39
2 3 4.457257 GCTTTGAGTTTGGAGAAGCTGTAT 59.543 41.667 0.00 0.00 39.56 2.29
3 4 3.815401 GCTTTGAGTTTGGAGAAGCTGTA 59.185 43.478 0.00 0.00 39.56 2.74
30 5193 2.226269 GCGCCGCGAGATTCTTTAT 58.774 52.632 18.91 0.00 0.00 1.40
48 5211 3.708734 GTGTCGTTTGGGCCGTCG 61.709 66.667 0.00 3.60 0.00 5.12
61 5224 3.934391 CTCTTCCCGGCCGTGTGTC 62.934 68.421 26.12 0.00 0.00 3.67
62 5225 4.003788 CTCTTCCCGGCCGTGTGT 62.004 66.667 26.12 0.00 0.00 3.72
63 5226 3.234630 TTCTCTTCCCGGCCGTGTG 62.235 63.158 26.12 12.45 0.00 3.82
66 5229 3.391382 CCTTCTCTTCCCGGCCGT 61.391 66.667 26.12 0.00 0.00 5.68
67 5230 4.840005 GCCTTCTCTTCCCGGCCG 62.840 72.222 21.04 21.04 36.56 6.13
68 5231 2.878089 GAAGCCTTCTCTTCCCGGCC 62.878 65.000 0.00 0.00 43.48 6.13
74 5237 1.280457 TGGGAGGAAGCCTTCTCTTC 58.720 55.000 4.15 0.00 41.21 2.87
434 7790 1.675641 GTTTCAGGCCCAGCGACAT 60.676 57.895 0.00 0.00 0.00 3.06
470 7826 1.750206 TGCACGCCAATTAGCATTCAT 59.250 42.857 0.00 0.00 31.05 2.57
490 7846 7.230712 CCCTACTTGTACCTTTTCACAAAGATT 59.769 37.037 0.00 0.00 41.97 2.40
569 7925 5.710099 CACCTTATGTACAATGTTCCAACCT 59.290 40.000 0.00 0.00 0.00 3.50
580 7936 5.127194 CAGGAGCTCTACACCTTATGTACAA 59.873 44.000 14.64 0.00 43.19 2.41
585 7941 5.446143 CTACAGGAGCTCTACACCTTATG 57.554 47.826 14.64 1.97 37.23 1.90
804 8173 4.458295 TGAGTTAAGCTGCTCGTAAGTAGT 59.542 41.667 1.00 0.00 37.53 2.73
853 8412 2.558359 CCCCTTTTCAGTTCGAAATGCT 59.442 45.455 20.19 0.47 43.12 3.79
872 8431 9.582431 GTCTAAAAACTCTTAATTATTTGGCCC 57.418 33.333 0.00 0.00 0.00 5.80
895 8455 5.238650 GGCTAACACAATGTAACAACTGTCT 59.761 40.000 0.00 0.00 0.00 3.41
901 8461 3.304123 GCACGGCTAACACAATGTAACAA 60.304 43.478 0.00 0.00 0.00 2.83
915 8479 1.815817 TTGCTGAGTCTGCACGGCTA 61.816 55.000 22.68 6.71 37.99 3.93
1113 8691 1.608542 CCCGGATCTATCTCGTCGTCT 60.609 57.143 0.73 0.00 0.00 4.18
1255 8968 1.003696 ACCTAGTGCCTGCCTCTTTTC 59.996 52.381 0.00 0.00 0.00 2.29
1257 8970 1.555533 GTACCTAGTGCCTGCCTCTTT 59.444 52.381 0.00 0.00 0.00 2.52
1280 8993 9.793252 AACTTATGATTGCTGTTGATGATTTAC 57.207 29.630 0.00 0.00 0.00 2.01
1290 9003 7.436118 ACACAATGAAACTTATGATTGCTGTT 58.564 30.769 0.00 0.00 0.00 3.16
1295 9008 9.773328 ATCGTAACACAATGAAACTTATGATTG 57.227 29.630 0.00 0.00 0.00 2.67
1303 9016 4.454504 GTGGGATCGTAACACAATGAAACT 59.545 41.667 0.00 0.00 35.30 2.66
1304 9017 4.454504 AGTGGGATCGTAACACAATGAAAC 59.545 41.667 9.93 0.00 37.58 2.78
1309 9022 5.871396 ATCTAGTGGGATCGTAACACAAT 57.129 39.130 9.93 0.00 37.58 2.71
1354 9067 2.478292 TCCCTCCCATTCCTCTGTAAC 58.522 52.381 0.00 0.00 0.00 2.50
1367 9080 1.894699 ACCCTAGACAAATCCCTCCC 58.105 55.000 0.00 0.00 0.00 4.30
1377 9092 5.046591 CCTTGTAACTCATGAACCCTAGACA 60.047 44.000 0.00 0.00 0.00 3.41
1895 9615 1.966451 AAGCTTCAACTTCCCGCCG 60.966 57.895 0.00 0.00 0.00 6.46
2127 9847 4.218578 CGAGCGCAGATGGAGGCT 62.219 66.667 11.47 0.00 38.70 4.58
2194 9915 3.055719 ACGGCACTTTGGCATCGG 61.056 61.111 0.33 0.00 43.94 4.18
2214 9935 2.257371 GCTCTGTACGGTCACGCA 59.743 61.111 0.64 0.00 46.04 5.24
2372 10094 1.524002 CAGACGGATGGGCAGTCAT 59.476 57.895 0.00 0.00 43.13 3.06
3192 10914 0.102120 CGACACCTTGGCAGCAAAAA 59.898 50.000 0.00 0.00 0.00 1.94
3345 11067 1.890510 GGGTCCACGAAACAACGCT 60.891 57.895 0.00 0.00 36.70 5.07
3368 11090 1.322442 GGTGGCTTTCTTGAGCAAGT 58.678 50.000 9.79 0.00 44.49 3.16
3460 11182 1.130561 GTTAGCACTGCCGGATTTCAC 59.869 52.381 5.05 0.00 0.00 3.18
3503 11225 3.823304 AGCAGCTTTCCAGGAACTTAAAG 59.177 43.478 0.00 0.00 40.10 1.85
3564 11286 0.902531 GCCCACTAACAGACCTGCTA 59.097 55.000 0.00 0.00 0.00 3.49
3587 11309 0.804989 GAGGAACTTTGGCATCACCG 59.195 55.000 0.00 0.00 41.55 4.94
3833 11555 1.233019 CCTGAAGCAACACTGTGAGG 58.767 55.000 15.86 4.93 0.00 3.86
4128 11850 3.698040 CAGTTAAGAACCGCTACCCTCTA 59.302 47.826 0.00 0.00 0.00 2.43
4331 12053 1.527380 GGGGCGAAACCAGTCAACA 60.527 57.895 0.00 0.00 42.05 3.33
4466 12188 3.435026 GCAAGGGGAGCCAATTATCACTA 60.435 47.826 0.00 0.00 0.00 2.74
4467 12189 2.687914 GCAAGGGGAGCCAATTATCACT 60.688 50.000 0.00 0.00 0.00 3.41
4473 12195 0.324091 CAGAGCAAGGGGAGCCAATT 60.324 55.000 0.00 0.00 0.00 2.32
4822 12544 0.779997 AAGGCCAAACACCCTCTGAT 59.220 50.000 5.01 0.00 0.00 2.90
4893 12616 3.125573 CTCGTCGACTCGGGCTCA 61.126 66.667 14.70 0.00 0.00 4.26
5092 12815 0.314935 GTCCAGTTGCATGTGGTTGG 59.685 55.000 13.20 4.12 35.14 3.77
5275 12998 3.515316 CTGCACCGACCAAGTCCGT 62.515 63.158 0.00 0.00 0.00 4.69
5323 13046 4.457496 CCGAGGAGTGCCACGCAT 62.457 66.667 0.00 0.00 45.34 4.73
5442 13165 4.884668 TTTACATCGACCCAAGACTCTT 57.115 40.909 0.00 0.00 0.00 2.85
5983 13710 4.090588 GATGTCGCCGGGGGAACA 62.091 66.667 19.63 16.63 0.00 3.18
6120 13853 4.363990 CCGTCGACAGCAGCACCT 62.364 66.667 17.16 0.00 0.00 4.00
6165 13898 2.107953 GAGCTGGTGCCTCCGATC 59.892 66.667 0.00 0.00 40.80 3.69
6364 14097 2.572095 AATCTGACGGCGGCGATCAA 62.572 55.000 38.93 23.24 0.00 2.57
6383 14116 2.523902 CCAACAAAGCCCTGGCCA 60.524 61.111 4.71 4.71 43.17 5.36
6441 14178 0.177141 CTGGCCGGTCGATTTCCTTA 59.823 55.000 2.29 0.00 0.00 2.69
6490 14227 5.751586 AGTGGGATCGTAACATTTGGTATT 58.248 37.500 0.00 0.00 0.00 1.89
6553 14290 3.265995 TGAACCCTAGACAAATCCTTCCC 59.734 47.826 0.00 0.00 0.00 3.97
6563 14302 5.046591 CCTTGTAACTCATGAACCCTAGACA 60.047 44.000 0.00 0.00 0.00 3.41
6631 14371 0.607620 GCAGGCAGAGAGAAGACACT 59.392 55.000 0.00 0.00 0.00 3.55
6632 14372 0.390998 GGCAGGCAGAGAGAAGACAC 60.391 60.000 0.00 0.00 0.00 3.67
6633 14373 0.543883 AGGCAGGCAGAGAGAAGACA 60.544 55.000 0.00 0.00 0.00 3.41
6634 14374 0.175531 GAGGCAGGCAGAGAGAAGAC 59.824 60.000 0.00 0.00 0.00 3.01
6635 14375 0.040942 AGAGGCAGGCAGAGAGAAGA 59.959 55.000 0.00 0.00 0.00 2.87
6636 14376 0.176219 CAGAGGCAGGCAGAGAGAAG 59.824 60.000 0.00 0.00 0.00 2.85
6637 14377 0.251967 TCAGAGGCAGGCAGAGAGAA 60.252 55.000 0.00 0.00 0.00 2.87
6858 14620 2.290960 GGCCTTGTTGTTCTCCAGGTAT 60.291 50.000 0.00 0.00 0.00 2.73
6895 14657 1.078848 GCAGGTCCAGCGTGAATCT 60.079 57.895 0.00 0.00 35.14 2.40
6897 14659 2.045926 GGCAGGTCCAGCGTGAAT 60.046 61.111 0.00 0.00 35.14 2.57
6911 14673 0.680601 TATCGTGTGGAGGTACGGCA 60.681 55.000 0.00 0.00 40.48 5.69
6913 14675 2.359848 TGAATATCGTGTGGAGGTACGG 59.640 50.000 0.00 0.00 40.48 4.02
6994 14756 3.981071 AAGGACGATGACATTCCTTGA 57.019 42.857 17.18 0.00 46.10 3.02
7141 14933 1.362768 CAGAATCGCTGCTAGCAACA 58.637 50.000 19.86 5.61 42.58 3.33
7158 14959 6.662414 ATAATTTACACGACCATCACACAG 57.338 37.500 0.00 0.00 0.00 3.66
7346 18977 7.040271 CCGGTAGAACCAAAATTAAGGAAAGAA 60.040 37.037 0.00 0.00 38.47 2.52
7356 18987 2.871453 ACAGCCGGTAGAACCAAAATT 58.129 42.857 1.90 0.00 38.47 1.82
7381 19018 4.207019 CGGAGCACAAAACATTTTCTTCAC 59.793 41.667 0.00 0.00 0.00 3.18
7522 19164 1.965930 TGGAGACACCAATGCGCAC 60.966 57.895 14.90 0.00 46.75 5.34
7563 19217 0.921896 ATAAGCATGGGCACAGGTCT 59.078 50.000 1.13 0.00 44.61 3.85
7566 19220 1.135527 CACAATAAGCATGGGCACAGG 59.864 52.381 0.00 0.00 44.61 4.00
7567 19221 1.820519 ACACAATAAGCATGGGCACAG 59.179 47.619 0.00 0.00 44.61 3.66
7572 19226 6.024552 AGTTACAAACACAATAAGCATGGG 57.975 37.500 0.00 0.00 0.00 4.00
7573 19227 6.305399 CGAAGTTACAAACACAATAAGCATGG 59.695 38.462 0.00 0.00 0.00 3.66
7575 19229 6.966021 ACGAAGTTACAAACACAATAAGCAT 58.034 32.000 0.00 0.00 37.78 3.79
7587 19246 6.128391 GCATCAAGTGGATACGAAGTTACAAA 60.128 38.462 0.00 0.00 45.11 2.83
7588 19247 5.350365 GCATCAAGTGGATACGAAGTTACAA 59.650 40.000 0.00 0.00 45.11 2.41
7589 19248 4.868171 GCATCAAGTGGATACGAAGTTACA 59.132 41.667 0.00 0.00 45.11 2.41
7590 19249 5.109903 AGCATCAAGTGGATACGAAGTTAC 58.890 41.667 0.00 0.00 45.11 2.50
7591 19250 5.339008 AGCATCAAGTGGATACGAAGTTA 57.661 39.130 0.00 0.00 45.11 2.24
7592 19251 4.207891 AGCATCAAGTGGATACGAAGTT 57.792 40.909 0.00 0.00 45.11 2.66
7593 19252 4.322725 TGAAGCATCAAGTGGATACGAAGT 60.323 41.667 0.00 0.00 37.26 3.01
7594 19253 4.183865 TGAAGCATCAAGTGGATACGAAG 58.816 43.478 0.00 0.00 33.95 3.79
7597 19256 5.490139 AAATGAAGCATCAAGTGGATACG 57.510 39.130 0.00 0.00 39.49 3.06
7713 19375 5.122396 GGACACATCATACAGAAAGAACCAC 59.878 44.000 0.00 0.00 0.00 4.16
7729 19391 1.061131 CAATCGCAACGAGGACACATC 59.939 52.381 0.00 0.00 39.91 3.06
7763 19425 4.114997 CAAACGGGACATGGGCGC 62.115 66.667 0.00 0.00 0.00 6.53
7765 19427 1.002624 TCTCAAACGGGACATGGGC 60.003 57.895 0.00 0.00 0.00 5.36
7771 19433 1.183549 TAGGAGCTCTCAAACGGGAC 58.816 55.000 14.64 0.00 0.00 4.46
7805 19467 1.999735 CGTCAGCTATCTTTTTCGGCA 59.000 47.619 0.00 0.00 0.00 5.69
7831 19493 2.256461 GGCCTGCGAACAAAGCTG 59.744 61.111 0.00 0.00 35.28 4.24
7867 19529 3.334583 ACTTGATAAAGCGAGCAGGAA 57.665 42.857 0.00 0.00 0.00 3.36
7871 19533 4.037446 ACCAAAAACTTGATAAAGCGAGCA 59.963 37.500 0.00 0.00 0.00 4.26
7872 19534 4.546570 ACCAAAAACTTGATAAAGCGAGC 58.453 39.130 0.00 0.00 0.00 5.03
7890 19562 6.997476 ACTGTAGGTAATAACGGAAAAACCAA 59.003 34.615 0.00 0.00 38.90 3.67
7891 19563 6.532826 ACTGTAGGTAATAACGGAAAAACCA 58.467 36.000 0.00 0.00 38.90 3.67
7892 19564 7.201435 CGTACTGTAGGTAATAACGGAAAAACC 60.201 40.741 0.00 0.00 31.56 3.27
7899 19575 4.576463 AGGTCGTACTGTAGGTAATAACGG 59.424 45.833 7.33 0.00 31.56 4.44
7925 19601 5.900425 AGTAGTTCACTAGATCATGCTGTG 58.100 41.667 0.00 0.00 34.98 3.66
7926 19602 5.068460 GGAGTAGTTCACTAGATCATGCTGT 59.932 44.000 0.00 0.00 37.72 4.40
7927 19603 5.508825 GGGAGTAGTTCACTAGATCATGCTG 60.509 48.000 0.00 0.00 37.72 4.41
7928 19604 4.586841 GGGAGTAGTTCACTAGATCATGCT 59.413 45.833 0.00 0.00 37.72 3.79
7929 19605 4.586841 AGGGAGTAGTTCACTAGATCATGC 59.413 45.833 0.00 0.00 37.95 4.06
7930 19606 6.723298 AAGGGAGTAGTTCACTAGATCATG 57.277 41.667 0.00 0.00 39.14 3.07
7931 19607 6.670027 ACAAAGGGAGTAGTTCACTAGATCAT 59.330 38.462 0.00 0.00 39.14 2.45
7932 19608 6.017192 ACAAAGGGAGTAGTTCACTAGATCA 58.983 40.000 0.00 0.00 39.14 2.92
7933 19609 6.406065 GGACAAAGGGAGTAGTTCACTAGATC 60.406 46.154 0.00 0.00 39.14 2.75
7934 19610 5.422650 GGACAAAGGGAGTAGTTCACTAGAT 59.577 44.000 0.00 0.00 39.14 1.98
7935 19611 4.771054 GGACAAAGGGAGTAGTTCACTAGA 59.229 45.833 0.00 0.00 39.14 2.43
7936 19612 4.773149 AGGACAAAGGGAGTAGTTCACTAG 59.227 45.833 0.00 0.00 39.14 2.57
7937 19613 4.527038 CAGGACAAAGGGAGTAGTTCACTA 59.473 45.833 0.00 0.00 39.14 2.74
7938 19614 3.325135 CAGGACAAAGGGAGTAGTTCACT 59.675 47.826 0.00 0.00 43.00 3.41
7939 19615 3.323979 TCAGGACAAAGGGAGTAGTTCAC 59.676 47.826 0.00 0.00 0.00 3.18
7940 19616 3.583228 TCAGGACAAAGGGAGTAGTTCA 58.417 45.455 0.00 0.00 0.00 3.18
7941 19617 4.618920 TTCAGGACAAAGGGAGTAGTTC 57.381 45.455 0.00 0.00 0.00 3.01
7942 19618 5.584551 AATTCAGGACAAAGGGAGTAGTT 57.415 39.130 0.00 0.00 0.00 2.24
7943 19619 5.785940 AGTAATTCAGGACAAAGGGAGTAGT 59.214 40.000 0.00 0.00 0.00 2.73
7944 19620 6.301169 AGTAATTCAGGACAAAGGGAGTAG 57.699 41.667 0.00 0.00 0.00 2.57
7945 19621 6.043938 ACAAGTAATTCAGGACAAAGGGAGTA 59.956 38.462 0.00 0.00 0.00 2.59
7946 19622 5.163088 ACAAGTAATTCAGGACAAAGGGAGT 60.163 40.000 0.00 0.00 0.00 3.85
7947 19623 5.316987 ACAAGTAATTCAGGACAAAGGGAG 58.683 41.667 0.00 0.00 0.00 4.30
7948 19624 5.313712 GACAAGTAATTCAGGACAAAGGGA 58.686 41.667 0.00 0.00 0.00 4.20
7949 19625 4.154195 CGACAAGTAATTCAGGACAAAGGG 59.846 45.833 0.00 0.00 0.00 3.95
7950 19626 4.378459 GCGACAAGTAATTCAGGACAAAGG 60.378 45.833 0.00 0.00 0.00 3.11
7951 19627 4.213270 TGCGACAAGTAATTCAGGACAAAG 59.787 41.667 0.00 0.00 0.00 2.77
7952 19628 4.130857 TGCGACAAGTAATTCAGGACAAA 58.869 39.130 0.00 0.00 0.00 2.83
7953 19629 3.734463 TGCGACAAGTAATTCAGGACAA 58.266 40.909 0.00 0.00 0.00 3.18
7954 19630 3.325870 CTGCGACAAGTAATTCAGGACA 58.674 45.455 0.00 0.00 0.00 4.02
7955 19631 2.094417 GCTGCGACAAGTAATTCAGGAC 59.906 50.000 0.00 0.00 0.00 3.85
7956 19632 2.346803 GCTGCGACAAGTAATTCAGGA 58.653 47.619 0.00 0.00 0.00 3.86
7957 19633 1.398390 GGCTGCGACAAGTAATTCAGG 59.602 52.381 0.00 0.00 0.00 3.86
7958 19634 2.349886 GAGGCTGCGACAAGTAATTCAG 59.650 50.000 0.00 0.00 0.00 3.02
7959 19635 2.289382 TGAGGCTGCGACAAGTAATTCA 60.289 45.455 0.00 0.00 0.00 2.57
7960 19636 2.346803 TGAGGCTGCGACAAGTAATTC 58.653 47.619 0.00 0.00 0.00 2.17
7961 19637 2.472695 TGAGGCTGCGACAAGTAATT 57.527 45.000 0.00 0.00 0.00 1.40
7962 19638 2.472695 TTGAGGCTGCGACAAGTAAT 57.527 45.000 0.00 0.00 0.00 1.89
7963 19639 2.248280 TTTGAGGCTGCGACAAGTAA 57.752 45.000 0.00 0.00 0.00 2.24
7964 19640 2.248280 TTTTGAGGCTGCGACAAGTA 57.752 45.000 0.00 2.11 0.00 2.24
7965 19641 1.334869 CTTTTTGAGGCTGCGACAAGT 59.665 47.619 0.00 0.00 0.00 3.16
7966 19642 1.603802 TCTTTTTGAGGCTGCGACAAG 59.396 47.619 0.00 0.00 0.00 3.16
7967 19643 1.674359 TCTTTTTGAGGCTGCGACAA 58.326 45.000 0.00 6.14 0.00 3.18
7968 19644 1.674359 TTCTTTTTGAGGCTGCGACA 58.326 45.000 0.00 0.00 0.00 4.35
7969 19645 2.774439 TTTCTTTTTGAGGCTGCGAC 57.226 45.000 0.00 0.00 0.00 5.19
7970 19646 3.354089 CTTTTCTTTTTGAGGCTGCGA 57.646 42.857 0.00 0.00 0.00 5.10


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.