Multiple sequence alignment - TraesCS7B01G291500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G291500 chr7B 100.000 2156 0 0 1 2156 527984142 527981987 0.000000e+00 3982
1 TraesCS7B01G291500 chr7B 89.062 256 26 2 931 1185 527994054 527993800 1.240000e-82 316
2 TraesCS7B01G291500 chr7B 85.088 228 30 4 1343 1568 528016598 528016373 1.660000e-56 230
3 TraesCS7B01G291500 chr7A 92.064 2180 94 30 1 2156 566022298 566020174 0.000000e+00 2994
4 TraesCS7B01G291500 chr7A 90.347 259 24 1 947 1205 566028004 566027747 2.650000e-89 339
5 TraesCS7B01G291500 chr7A 87.129 303 32 6 890 1188 566026065 566025766 9.530000e-89 337
6 TraesCS7B01G291500 chr7A 84.046 351 48 6 836 1185 566023333 566022990 4.440000e-87 331
7 TraesCS7B01G291500 chr7A 88.525 244 28 0 944 1187 704830556 704830799 1.620000e-76 296
8 TraesCS7B01G291500 chr7D 90.649 1155 40 17 1011 2156 500102114 500101019 0.000000e+00 1472
9 TraesCS7B01G291500 chr7D 91.447 912 45 15 1 883 500115300 500114393 0.000000e+00 1221
10 TraesCS7B01G291500 chr7D 86.842 304 32 6 890 1188 500140181 500139881 1.230000e-87 333
11 TraesCS7B01G291500 chr7D 83.476 351 50 6 836 1185 500117470 500117127 9.600000e-84 320
12 TraesCS7B01G291500 chr7D 87.295 244 31 0 945 1188 613431754 613431997 1.630000e-71 279
13 TraesCS7B01G291500 chr7D 87.054 224 27 2 1343 1564 500139405 500139182 3.550000e-63 252
14 TraesCS7B01G291500 chr5D 79.464 224 33 12 150 370 424170308 424170095 1.720000e-31 147
15 TraesCS7B01G291500 chr2A 75.588 340 56 18 79 393 686794699 686794362 2.230000e-30 143
16 TraesCS7B01G291500 chr1D 81.921 177 24 5 233 402 444355078 444355253 2.230000e-30 143


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G291500 chr7B 527981987 527984142 2155 True 3982.00 3982 100.0000 1 2156 1 chr7B.!!$R1 2155
1 TraesCS7B01G291500 chr7A 566020174 566028004 7830 True 1000.25 2994 88.3965 1 2156 4 chr7A.!!$R1 2155
2 TraesCS7B01G291500 chr7D 500101019 500102114 1095 True 1472.00 1472 90.6490 1011 2156 1 chr7D.!!$R1 1145
3 TraesCS7B01G291500 chr7D 500114393 500117470 3077 True 770.50 1221 87.4615 1 1185 2 chr7D.!!$R2 1184
4 TraesCS7B01G291500 chr7D 500139182 500140181 999 True 292.50 333 86.9480 890 1564 2 chr7D.!!$R3 674

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
430 1930 0.035439 AACGGCCATCTCAACGGAAT 60.035 50.0 2.24 0.0 0.0 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1873 8860 0.682209 AATTGCTGGCCAAGATCGCT 60.682 50.0 7.01 0.0 36.76 4.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.975693 TGTTTAAGTTGTGGGATTGGATC 57.024 39.130 0.00 0.00 0.00 3.36
34 35 4.682021 GGATTGGATCCTTGGGGAATAT 57.318 45.455 14.23 0.00 45.78 1.28
35 36 5.015813 GGATTGGATCCTTGGGGAATATT 57.984 43.478 14.23 0.00 45.78 1.28
36 37 5.406163 GGATTGGATCCTTGGGGAATATTT 58.594 41.667 14.23 0.00 45.78 1.40
37 38 5.481824 GGATTGGATCCTTGGGGAATATTTC 59.518 44.000 14.23 0.00 45.78 2.17
38 39 5.749422 TTGGATCCTTGGGGAATATTTCT 57.251 39.130 14.23 0.00 45.78 2.52
39 40 5.324832 TGGATCCTTGGGGAATATTTCTC 57.675 43.478 14.23 0.00 45.78 2.87
40 41 4.731416 TGGATCCTTGGGGAATATTTCTCA 59.269 41.667 14.23 0.00 45.78 3.27
41 42 5.195553 TGGATCCTTGGGGAATATTTCTCAA 59.804 40.000 14.23 8.80 45.78 3.02
46 47 5.760131 CTTGGGGAATATTTCTCAAGGACT 58.240 41.667 23.95 0.00 37.31 3.85
47 48 5.373812 TGGGGAATATTTCTCAAGGACTC 57.626 43.478 0.00 0.00 0.00 3.36
48 49 4.141711 TGGGGAATATTTCTCAAGGACTCG 60.142 45.833 0.00 0.00 0.00 4.18
50 51 5.429130 GGGAATATTTCTCAAGGACTCGTT 58.571 41.667 0.00 0.00 0.00 3.85
51 52 5.880887 GGGAATATTTCTCAAGGACTCGTTT 59.119 40.000 0.00 0.00 0.00 3.60
52 53 6.183360 GGGAATATTTCTCAAGGACTCGTTTG 60.183 42.308 0.00 0.00 0.00 2.93
53 54 5.803020 ATATTTCTCAAGGACTCGTTTGC 57.197 39.130 0.00 0.00 0.00 3.68
55 56 1.865865 TCTCAAGGACTCGTTTGCAC 58.134 50.000 0.00 0.00 0.00 4.57
56 57 1.412710 TCTCAAGGACTCGTTTGCACT 59.587 47.619 0.00 0.00 0.00 4.40
57 58 2.626266 TCTCAAGGACTCGTTTGCACTA 59.374 45.455 0.00 0.00 0.00 2.74
67 950 5.775686 ACTCGTTTGCACTACATTAGTACA 58.224 37.500 0.00 0.00 37.23 2.90
71 954 6.750501 TCGTTTGCACTACATTAGTACATCTC 59.249 38.462 0.00 0.00 37.23 2.75
72 955 6.530181 CGTTTGCACTACATTAGTACATCTCA 59.470 38.462 0.00 0.00 37.23 3.27
73 956 7.062956 CGTTTGCACTACATTAGTACATCTCAA 59.937 37.037 0.00 0.00 37.23 3.02
74 957 8.883731 GTTTGCACTACATTAGTACATCTCAAT 58.116 33.333 0.00 0.00 37.23 2.57
76 959 6.479990 TGCACTACATTAGTACATCTCAATGC 59.520 38.462 0.00 0.00 37.23 3.56
78 961 7.307042 GCACTACATTAGTACATCTCAATGCAG 60.307 40.741 0.00 0.27 37.23 4.41
79 962 7.922811 CACTACATTAGTACATCTCAATGCAGA 59.077 37.037 0.00 0.00 37.23 4.26
80 963 8.478066 ACTACATTAGTACATCTCAATGCAGAA 58.522 33.333 0.00 0.00 37.23 3.02
82 965 8.743085 ACATTAGTACATCTCAATGCAGAAAT 57.257 30.769 0.00 0.00 36.26 2.17
83 966 9.182214 ACATTAGTACATCTCAATGCAGAAATT 57.818 29.630 0.00 0.00 36.26 1.82
84 967 9.661187 CATTAGTACATCTCAATGCAGAAATTC 57.339 33.333 0.00 0.00 36.26 2.17
86 969 7.692460 AGTACATCTCAATGCAGAAATTCAA 57.308 32.000 0.00 0.00 36.26 2.69
87 970 8.289939 AGTACATCTCAATGCAGAAATTCAAT 57.710 30.769 0.00 0.00 36.26 2.57
88 971 8.746530 AGTACATCTCAATGCAGAAATTCAATT 58.253 29.630 0.00 0.00 36.26 2.32
89 972 9.362539 GTACATCTCAATGCAGAAATTCAATTT 57.637 29.630 0.00 0.00 36.26 1.82
90 973 8.251750 ACATCTCAATGCAGAAATTCAATTTG 57.748 30.769 0.00 0.00 36.26 2.32
91 974 7.333423 ACATCTCAATGCAGAAATTCAATTTGG 59.667 33.333 0.00 0.00 36.26 3.28
92 975 5.640357 TCTCAATGCAGAAATTCAATTTGGC 59.360 36.000 0.00 4.74 31.47 4.52
93 976 5.553123 TCAATGCAGAAATTCAATTTGGCT 58.447 33.333 14.16 0.00 33.06 4.75
95 978 4.877378 TGCAGAAATTCAATTTGGCTCT 57.123 36.364 14.16 0.00 33.06 4.09
96 979 5.217978 TGCAGAAATTCAATTTGGCTCTT 57.782 34.783 14.16 0.00 33.06 2.85
97 980 5.232463 TGCAGAAATTCAATTTGGCTCTTC 58.768 37.500 14.16 0.00 33.06 2.87
98 981 4.325472 GCAGAAATTCAATTTGGCTCTTCG 59.675 41.667 0.00 0.00 31.47 3.79
99 982 4.860907 CAGAAATTCAATTTGGCTCTTCGG 59.139 41.667 0.00 0.00 31.47 4.30
101 984 4.708726 AATTCAATTTGGCTCTTCGGAG 57.291 40.909 0.00 0.00 44.45 4.63
147 1647 9.829507 TGTTTATTTCCAAATGTCAAATGTCTT 57.170 25.926 0.00 0.00 0.00 3.01
177 1677 7.865706 AATAGATGTCTTTATTGTCACACCC 57.134 36.000 0.00 0.00 0.00 4.61
178 1678 5.241403 AGATGTCTTTATTGTCACACCCA 57.759 39.130 0.00 0.00 0.00 4.51
179 1679 5.630121 AGATGTCTTTATTGTCACACCCAA 58.370 37.500 0.00 0.00 0.00 4.12
180 1680 6.068010 AGATGTCTTTATTGTCACACCCAAA 58.932 36.000 0.00 0.00 0.00 3.28
181 1681 6.721208 AGATGTCTTTATTGTCACACCCAAAT 59.279 34.615 0.00 0.00 0.00 2.32
182 1682 6.083098 TGTCTTTATTGTCACACCCAAATG 57.917 37.500 0.00 0.00 0.00 2.32
183 1683 4.923281 GTCTTTATTGTCACACCCAAATGC 59.077 41.667 0.00 0.00 0.00 3.56
184 1684 4.832266 TCTTTATTGTCACACCCAAATGCT 59.168 37.500 0.00 0.00 0.00 3.79
185 1685 6.007076 TCTTTATTGTCACACCCAAATGCTA 58.993 36.000 0.00 0.00 0.00 3.49
186 1686 6.663093 TCTTTATTGTCACACCCAAATGCTAT 59.337 34.615 0.00 0.00 0.00 2.97
187 1687 4.989279 ATTGTCACACCCAAATGCTATC 57.011 40.909 0.00 0.00 0.00 2.08
188 1688 3.719268 TGTCACACCCAAATGCTATCT 57.281 42.857 0.00 0.00 0.00 1.98
189 1689 3.346315 TGTCACACCCAAATGCTATCTG 58.654 45.455 0.00 0.00 0.00 2.90
190 1690 2.098117 GTCACACCCAAATGCTATCTGC 59.902 50.000 0.00 0.00 43.25 4.26
204 1704 5.505173 GCTATCTGCAATTTTTAGCTGGA 57.495 39.130 0.00 0.00 42.31 3.86
205 1705 5.894807 GCTATCTGCAATTTTTAGCTGGAA 58.105 37.500 0.00 0.00 42.31 3.53
206 1706 6.332630 GCTATCTGCAATTTTTAGCTGGAAA 58.667 36.000 0.00 0.00 42.31 3.13
207 1707 6.474751 GCTATCTGCAATTTTTAGCTGGAAAG 59.525 38.462 0.00 0.00 42.31 2.62
208 1708 4.559153 TCTGCAATTTTTAGCTGGAAAGC 58.441 39.130 0.00 0.00 0.00 3.51
210 1710 4.959723 TGCAATTTTTAGCTGGAAAGCTT 58.040 34.783 5.43 0.00 43.52 3.74
211 1711 6.015519 TCTGCAATTTTTAGCTGGAAAGCTTA 60.016 34.615 5.43 0.00 43.52 3.09
218 1718 5.982890 TTAGCTGGAAAGCTTAAGCATTT 57.017 34.783 28.39 22.74 43.52 2.32
220 1720 4.563061 AGCTGGAAAGCTTAAGCATTTTG 58.437 39.130 28.39 16.45 43.52 2.44
222 1722 4.386954 GCTGGAAAGCTTAAGCATTTTGAC 59.613 41.667 28.39 15.34 45.16 3.18
223 1723 5.528043 TGGAAAGCTTAAGCATTTTGACA 57.472 34.783 28.39 17.30 45.16 3.58
227 1727 6.128742 GGAAAGCTTAAGCATTTTGACATGTG 60.129 38.462 28.39 0.00 45.16 3.21
228 1728 5.458041 AGCTTAAGCATTTTGACATGTGT 57.542 34.783 28.39 0.11 45.16 3.72
229 1729 5.224888 AGCTTAAGCATTTTGACATGTGTG 58.775 37.500 28.39 0.00 45.16 3.82
230 1730 5.009911 AGCTTAAGCATTTTGACATGTGTGA 59.990 36.000 28.39 0.00 45.16 3.58
231 1731 5.691305 GCTTAAGCATTTTGACATGTGTGAA 59.309 36.000 22.59 0.00 41.59 3.18
256 1756 3.518634 ACAAGTCAAACGCCAAATGTT 57.481 38.095 0.00 0.00 0.00 2.71
258 1758 5.195001 ACAAGTCAAACGCCAAATGTTAT 57.805 34.783 0.00 0.00 0.00 1.89
259 1759 6.320494 ACAAGTCAAACGCCAAATGTTATA 57.680 33.333 0.00 0.00 0.00 0.98
261 1761 6.016610 ACAAGTCAAACGCCAAATGTTATACT 60.017 34.615 0.00 0.00 0.00 2.12
262 1762 6.569179 AGTCAAACGCCAAATGTTATACTT 57.431 33.333 0.00 0.00 0.00 2.24
263 1763 7.675962 AGTCAAACGCCAAATGTTATACTTA 57.324 32.000 0.00 0.00 0.00 2.24
265 1765 8.736244 AGTCAAACGCCAAATGTTATACTTAAT 58.264 29.630 0.00 0.00 0.00 1.40
292 1792 1.956043 TTCACCGGTGAAGCATTGC 59.044 52.632 39.59 0.00 43.90 3.56
293 1793 0.537143 TTCACCGGTGAAGCATTGCT 60.537 50.000 39.59 5.03 43.90 3.91
294 1794 0.323302 TCACCGGTGAAGCATTGCTA 59.677 50.000 34.60 8.10 38.25 3.49
295 1795 1.065491 TCACCGGTGAAGCATTGCTAT 60.065 47.619 34.60 2.28 38.25 2.97
296 1796 1.331756 CACCGGTGAAGCATTGCTATC 59.668 52.381 31.31 11.85 38.25 2.08
298 1798 1.869767 CCGGTGAAGCATTGCTATCTC 59.130 52.381 12.39 6.73 38.25 2.75
299 1799 1.524355 CGGTGAAGCATTGCTATCTCG 59.476 52.381 12.39 10.26 38.25 4.04
300 1800 2.555199 GGTGAAGCATTGCTATCTCGT 58.445 47.619 12.39 0.00 38.25 4.18
301 1801 2.939103 GGTGAAGCATTGCTATCTCGTT 59.061 45.455 12.39 0.00 38.25 3.85
302 1802 3.375299 GGTGAAGCATTGCTATCTCGTTT 59.625 43.478 12.39 0.00 38.25 3.60
303 1803 4.494855 GGTGAAGCATTGCTATCTCGTTTC 60.495 45.833 12.39 3.72 38.25 2.78
304 1804 3.306973 TGAAGCATTGCTATCTCGTTTCG 59.693 43.478 12.39 0.00 38.25 3.46
305 1805 1.594862 AGCATTGCTATCTCGTTTCGC 59.405 47.619 10.00 0.00 36.99 4.70
307 1807 2.032549 GCATTGCTATCTCGTTTCGCAT 60.033 45.455 0.16 0.00 0.00 4.73
308 1808 3.538780 CATTGCTATCTCGTTTCGCATG 58.461 45.455 0.00 0.00 0.00 4.06
309 1809 2.577449 TGCTATCTCGTTTCGCATGA 57.423 45.000 0.00 0.00 0.00 3.07
310 1810 2.887337 TGCTATCTCGTTTCGCATGAA 58.113 42.857 0.00 0.00 0.00 2.57
311 1811 3.258228 TGCTATCTCGTTTCGCATGAAA 58.742 40.909 0.00 0.00 41.69 2.69
312 1812 3.682377 TGCTATCTCGTTTCGCATGAAAA 59.318 39.130 0.00 0.00 45.22 2.29
313 1813 4.332543 TGCTATCTCGTTTCGCATGAAAAT 59.667 37.500 0.00 0.00 45.22 1.82
314 1814 5.163764 TGCTATCTCGTTTCGCATGAAAATT 60.164 36.000 0.00 0.00 45.22 1.82
315 1815 5.739161 GCTATCTCGTTTCGCATGAAAATTT 59.261 36.000 0.00 0.00 45.22 1.82
316 1816 6.251376 GCTATCTCGTTTCGCATGAAAATTTT 59.749 34.615 2.28 2.28 45.22 1.82
317 1817 6.617289 ATCTCGTTTCGCATGAAAATTTTC 57.383 33.333 21.60 21.60 45.22 2.29
337 1837 3.338818 CAAGCACACTTGTTACACTGG 57.661 47.619 0.00 0.00 46.84 4.00
338 1838 1.308998 AGCACACTTGTTACACTGGC 58.691 50.000 0.00 0.00 0.00 4.85
339 1839 1.021202 GCACACTTGTTACACTGGCA 58.979 50.000 0.00 0.00 0.00 4.92
340 1840 1.608590 GCACACTTGTTACACTGGCAT 59.391 47.619 0.00 0.00 0.00 4.40
343 1843 3.314913 CACACTTGTTACACTGGCATGAA 59.685 43.478 0.00 0.00 0.00 2.57
344 1844 3.315191 ACACTTGTTACACTGGCATGAAC 59.685 43.478 0.00 0.00 0.00 3.18
345 1845 3.314913 CACTTGTTACACTGGCATGAACA 59.685 43.478 0.00 0.00 0.00 3.18
347 1847 4.216257 ACTTGTTACACTGGCATGAACATC 59.784 41.667 0.00 0.00 30.61 3.06
348 1848 4.019792 TGTTACACTGGCATGAACATCT 57.980 40.909 0.00 0.00 0.00 2.90
349 1849 5.159273 TGTTACACTGGCATGAACATCTA 57.841 39.130 0.00 0.00 0.00 1.98
350 1850 4.935205 TGTTACACTGGCATGAACATCTAC 59.065 41.667 0.00 0.00 0.00 2.59
351 1851 3.701205 ACACTGGCATGAACATCTACA 57.299 42.857 0.00 0.00 0.00 2.74
352 1852 4.019792 ACACTGGCATGAACATCTACAA 57.980 40.909 0.00 0.00 0.00 2.41
353 1853 4.397420 ACACTGGCATGAACATCTACAAA 58.603 39.130 0.00 0.00 0.00 2.83
354 1854 4.826733 ACACTGGCATGAACATCTACAAAA 59.173 37.500 0.00 0.00 0.00 2.44
355 1855 5.301551 ACACTGGCATGAACATCTACAAAAA 59.698 36.000 0.00 0.00 0.00 1.94
356 1856 6.015180 ACACTGGCATGAACATCTACAAAAAT 60.015 34.615 0.00 0.00 0.00 1.82
357 1857 7.176515 ACACTGGCATGAACATCTACAAAAATA 59.823 33.333 0.00 0.00 0.00 1.40
358 1858 8.028354 CACTGGCATGAACATCTACAAAAATAA 58.972 33.333 0.00 0.00 0.00 1.40
359 1859 8.584157 ACTGGCATGAACATCTACAAAAATAAA 58.416 29.630 0.00 0.00 0.00 1.40
360 1860 9.421806 CTGGCATGAACATCTACAAAAATAAAA 57.578 29.630 0.00 0.00 0.00 1.52
361 1861 9.941325 TGGCATGAACATCTACAAAAATAAAAT 57.059 25.926 0.00 0.00 0.00 1.82
407 1907 7.876896 TTTGAATTTACGGTTTATCCAAAGC 57.123 32.000 0.00 0.00 38.50 3.51
408 1908 5.956642 TGAATTTACGGTTTATCCAAAGCC 58.043 37.500 0.00 0.00 38.63 4.35
409 1909 5.477291 TGAATTTACGGTTTATCCAAAGCCA 59.523 36.000 0.00 0.00 38.63 4.75
410 1910 5.986501 ATTTACGGTTTATCCAAAGCCAA 57.013 34.783 0.00 0.00 38.63 4.52
411 1911 5.786264 TTTACGGTTTATCCAAAGCCAAA 57.214 34.783 0.00 0.00 38.63 3.28
412 1912 5.786264 TTACGGTTTATCCAAAGCCAAAA 57.214 34.783 0.00 0.00 38.63 2.44
413 1913 3.985008 ACGGTTTATCCAAAGCCAAAAC 58.015 40.909 0.00 0.00 38.63 2.43
414 1914 2.983803 CGGTTTATCCAAAGCCAAAACG 59.016 45.455 0.00 0.00 38.63 3.60
415 1915 3.322369 GGTTTATCCAAAGCCAAAACGG 58.678 45.455 0.00 0.00 36.37 4.44
425 1925 3.792716 CCAAAACGGCCATCTCAAC 57.207 52.632 2.24 0.00 0.00 3.18
426 1926 0.109781 CCAAAACGGCCATCTCAACG 60.110 55.000 2.24 0.00 0.00 4.10
427 1927 0.109781 CAAAACGGCCATCTCAACGG 60.110 55.000 2.24 0.00 0.00 4.44
428 1928 0.250553 AAAACGGCCATCTCAACGGA 60.251 50.000 2.24 0.00 0.00 4.69
429 1929 0.250553 AAACGGCCATCTCAACGGAA 60.251 50.000 2.24 0.00 0.00 4.30
430 1930 0.035439 AACGGCCATCTCAACGGAAT 60.035 50.000 2.24 0.00 0.00 3.01
431 1931 0.828022 ACGGCCATCTCAACGGAATA 59.172 50.000 2.24 0.00 0.00 1.75
432 1932 1.208535 ACGGCCATCTCAACGGAATAA 59.791 47.619 2.24 0.00 0.00 1.40
433 1933 2.285083 CGGCCATCTCAACGGAATAAA 58.715 47.619 2.24 0.00 0.00 1.40
434 1934 2.878406 CGGCCATCTCAACGGAATAAAT 59.122 45.455 2.24 0.00 0.00 1.40
435 1935 3.315191 CGGCCATCTCAACGGAATAAATT 59.685 43.478 2.24 0.00 0.00 1.82
436 1936 4.554723 CGGCCATCTCAACGGAATAAATTC 60.555 45.833 2.24 0.00 36.08 2.17
437 1937 4.580580 GGCCATCTCAACGGAATAAATTCT 59.419 41.667 0.00 0.00 37.00 2.40
438 1938 5.763204 GGCCATCTCAACGGAATAAATTCTA 59.237 40.000 0.00 0.00 37.00 2.10
439 1939 6.431234 GGCCATCTCAACGGAATAAATTCTAT 59.569 38.462 0.00 0.00 37.00 1.98
440 1940 7.040409 GGCCATCTCAACGGAATAAATTCTATT 60.040 37.037 0.00 0.00 37.00 1.73
441 1941 7.805071 GCCATCTCAACGGAATAAATTCTATTG 59.195 37.037 2.91 7.56 37.00 1.90
442 1942 9.056005 CCATCTCAACGGAATAAATTCTATTGA 57.944 33.333 15.25 15.25 37.80 2.57
443 1943 9.869844 CATCTCAACGGAATAAATTCTATTGAC 57.130 33.333 13.47 0.00 36.56 3.18
444 1944 9.838339 ATCTCAACGGAATAAATTCTATTGACT 57.162 29.630 13.47 6.28 36.56 3.41
445 1945 9.314321 TCTCAACGGAATAAATTCTATTGACTC 57.686 33.333 13.47 0.00 36.56 3.36
446 1946 9.098355 CTCAACGGAATAAATTCTATTGACTCA 57.902 33.333 13.47 0.00 36.56 3.41
447 1947 9.443323 TCAACGGAATAAATTCTATTGACTCAA 57.557 29.630 13.47 0.00 36.56 3.02
450 1950 8.674607 ACGGAATAAATTCTATTGACTCAAACC 58.325 33.333 0.00 0.00 37.00 3.27
451 1951 8.893727 CGGAATAAATTCTATTGACTCAAACCT 58.106 33.333 0.00 0.00 37.00 3.50
456 1956 7.693969 AATTCTATTGACTCAAACCTCTTGG 57.306 36.000 0.00 0.00 39.83 3.61
466 1966 8.576442 TGACTCAAACCTCTTGGATTATTTTTC 58.424 33.333 0.00 0.00 37.04 2.29
467 1967 8.712228 ACTCAAACCTCTTGGATTATTTTTCT 57.288 30.769 0.00 0.00 37.04 2.52
468 1968 8.797438 ACTCAAACCTCTTGGATTATTTTTCTC 58.203 33.333 0.00 0.00 37.04 2.87
473 1973 8.884124 ACCTCTTGGATTATTTTTCTCAATCA 57.116 30.769 0.00 0.00 37.04 2.57
480 1980 9.912634 TGGATTATTTTTCTCAATCAAAGACAC 57.087 29.630 0.00 0.00 31.61 3.67
488 1988 7.969536 TTCTCAATCAAAGACACTTTAGGAG 57.030 36.000 0.00 0.00 0.00 3.69
493 1993 9.354673 TCAATCAAAGACACTTTAGGAGAAATT 57.645 29.630 0.00 0.00 0.00 1.82
497 1997 9.354673 TCAAAGACACTTTAGGAGAAATTCAAT 57.645 29.630 0.00 0.00 0.00 2.57
498 1998 9.617975 CAAAGACACTTTAGGAGAAATTCAATC 57.382 33.333 0.00 0.00 0.00 2.67
499 1999 9.579932 AAAGACACTTTAGGAGAAATTCAATCT 57.420 29.630 0.00 0.00 0.00 2.40
500 2000 9.579932 AAGACACTTTAGGAGAAATTCAATCTT 57.420 29.630 0.00 0.00 0.00 2.40
501 2001 9.007901 AGACACTTTAGGAGAAATTCAATCTTG 57.992 33.333 0.00 0.00 0.00 3.02
502 2002 8.697507 ACACTTTAGGAGAAATTCAATCTTGT 57.302 30.769 0.00 0.00 0.00 3.16
503 2003 9.793259 ACACTTTAGGAGAAATTCAATCTTGTA 57.207 29.630 0.00 0.00 0.00 2.41
505 2005 9.454859 ACTTTAGGAGAAATTCAATCTTGTAGG 57.545 33.333 0.00 0.00 0.00 3.18
506 2006 9.672673 CTTTAGGAGAAATTCAATCTTGTAGGA 57.327 33.333 0.00 0.00 0.00 2.94
516 2016 5.808042 CAATCTTGTAGGATTGGAGTGTG 57.192 43.478 8.39 0.00 45.01 3.82
517 2017 3.334583 TCTTGTAGGATTGGAGTGTGC 57.665 47.619 0.00 0.00 0.00 4.57
518 2018 2.637382 TCTTGTAGGATTGGAGTGTGCA 59.363 45.455 0.00 0.00 0.00 4.57
519 2019 3.264193 TCTTGTAGGATTGGAGTGTGCAT 59.736 43.478 0.00 0.00 0.00 3.96
520 2020 3.719268 TGTAGGATTGGAGTGTGCATT 57.281 42.857 0.00 0.00 0.00 3.56
521 2021 3.346315 TGTAGGATTGGAGTGTGCATTG 58.654 45.455 0.00 0.00 0.00 2.82
522 2022 1.843368 AGGATTGGAGTGTGCATTGG 58.157 50.000 0.00 0.00 0.00 3.16
523 2023 1.355381 AGGATTGGAGTGTGCATTGGA 59.645 47.619 0.00 0.00 0.00 3.53
524 2024 2.170166 GGATTGGAGTGTGCATTGGAA 58.830 47.619 0.00 0.00 0.00 3.53
525 2025 2.762327 GGATTGGAGTGTGCATTGGAAT 59.238 45.455 0.00 0.00 0.00 3.01
528 2028 3.090210 TGGAGTGTGCATTGGAATCAT 57.910 42.857 0.00 0.00 0.00 2.45
529 2029 2.756207 TGGAGTGTGCATTGGAATCATG 59.244 45.455 0.00 0.00 0.00 3.07
530 2030 2.756760 GGAGTGTGCATTGGAATCATGT 59.243 45.455 0.00 0.00 0.00 3.21
531 2031 3.194116 GGAGTGTGCATTGGAATCATGTT 59.806 43.478 0.00 0.00 0.00 2.71
532 2032 4.322198 GGAGTGTGCATTGGAATCATGTTT 60.322 41.667 0.00 0.00 0.00 2.83
598 2098 5.376854 AAAAGCCATAGTAGCAAACAGTG 57.623 39.130 0.00 0.00 0.00 3.66
614 2114 7.786305 CAAACAGTGCACAACATTCTAATAG 57.214 36.000 21.04 0.00 0.00 1.73
615 2115 7.584108 CAAACAGTGCACAACATTCTAATAGA 58.416 34.615 21.04 0.00 0.00 1.98
616 2116 6.727824 ACAGTGCACAACATTCTAATAGAC 57.272 37.500 21.04 0.00 0.00 2.59
617 2117 6.230472 ACAGTGCACAACATTCTAATAGACA 58.770 36.000 21.04 0.00 0.00 3.41
618 2118 6.881065 ACAGTGCACAACATTCTAATAGACAT 59.119 34.615 21.04 0.00 0.00 3.06
619 2119 7.391554 ACAGTGCACAACATTCTAATAGACATT 59.608 33.333 21.04 0.00 0.00 2.71
620 2120 8.239314 CAGTGCACAACATTCTAATAGACATTT 58.761 33.333 21.04 0.00 0.00 2.32
621 2121 8.796475 AGTGCACAACATTCTAATAGACATTTT 58.204 29.630 21.04 0.00 0.00 1.82
622 2122 9.410556 GTGCACAACATTCTAATAGACATTTTT 57.589 29.630 13.17 0.00 0.00 1.94
623 2123 9.409312 TGCACAACATTCTAATAGACATTTTTG 57.591 29.630 0.00 0.00 0.00 2.44
624 2124 8.375465 GCACAACATTCTAATAGACATTTTTGC 58.625 33.333 0.00 0.00 0.00 3.68
625 2125 9.630098 CACAACATTCTAATAGACATTTTTGCT 57.370 29.630 0.00 0.00 0.00 3.91
665 2165 9.322773 TGTTTTAGAAATCATGCAAATCAAACA 57.677 25.926 0.00 0.00 0.00 2.83
666 2166 9.801714 GTTTTAGAAATCATGCAAATCAAACAG 57.198 29.630 0.00 0.00 0.00 3.16
667 2167 9.761504 TTTTAGAAATCATGCAAATCAAACAGA 57.238 25.926 0.00 0.00 0.00 3.41
668 2168 8.746922 TTAGAAATCATGCAAATCAAACAGAC 57.253 30.769 0.00 0.00 0.00 3.51
669 2169 5.860182 AGAAATCATGCAAATCAAACAGACG 59.140 36.000 0.00 0.00 0.00 4.18
670 2170 4.771590 ATCATGCAAATCAAACAGACGT 57.228 36.364 0.00 0.00 0.00 4.34
671 2171 4.145876 TCATGCAAATCAAACAGACGTC 57.854 40.909 7.70 7.70 0.00 4.34
672 2172 2.661504 TGCAAATCAAACAGACGTCG 57.338 45.000 10.46 7.86 0.00 5.12
673 2173 2.205911 TGCAAATCAAACAGACGTCGA 58.794 42.857 10.46 0.76 0.00 4.20
674 2174 2.609916 TGCAAATCAAACAGACGTCGAA 59.390 40.909 10.46 0.00 0.00 3.71
675 2175 3.064134 TGCAAATCAAACAGACGTCGAAA 59.936 39.130 10.46 0.00 0.00 3.46
676 2176 3.659444 GCAAATCAAACAGACGTCGAAAG 59.341 43.478 10.46 4.41 0.00 2.62
677 2177 4.785341 GCAAATCAAACAGACGTCGAAAGT 60.785 41.667 10.46 5.07 0.00 2.66
678 2178 5.263185 CAAATCAAACAGACGTCGAAAGTT 58.737 37.500 10.46 10.91 0.00 2.66
679 2179 4.710528 ATCAAACAGACGTCGAAAGTTC 57.289 40.909 10.46 0.00 0.00 3.01
680 2180 3.777478 TCAAACAGACGTCGAAAGTTCT 58.223 40.909 10.46 3.37 0.00 3.01
681 2181 3.795101 TCAAACAGACGTCGAAAGTTCTC 59.205 43.478 10.46 0.00 0.00 2.87
682 2182 2.418983 ACAGACGTCGAAAGTTCTCC 57.581 50.000 10.46 0.00 0.00 3.71
683 2183 1.679680 ACAGACGTCGAAAGTTCTCCA 59.320 47.619 10.46 0.00 0.00 3.86
684 2184 2.052157 CAGACGTCGAAAGTTCTCCAC 58.948 52.381 10.46 0.00 0.00 4.02
685 2185 1.679680 AGACGTCGAAAGTTCTCCACA 59.320 47.619 10.46 0.00 0.00 4.17
686 2186 2.100252 AGACGTCGAAAGTTCTCCACAA 59.900 45.455 10.46 0.00 0.00 3.33
687 2187 2.199236 ACGTCGAAAGTTCTCCACAAC 58.801 47.619 0.00 0.00 0.00 3.32
688 2188 2.198406 CGTCGAAAGTTCTCCACAACA 58.802 47.619 0.00 0.00 0.00 3.33
689 2189 2.605818 CGTCGAAAGTTCTCCACAACAA 59.394 45.455 0.00 0.00 0.00 2.83
690 2190 3.247648 CGTCGAAAGTTCTCCACAACAAT 59.752 43.478 0.00 0.00 0.00 2.71
691 2191 4.446385 CGTCGAAAGTTCTCCACAACAATA 59.554 41.667 0.00 0.00 0.00 1.90
692 2192 5.120208 CGTCGAAAGTTCTCCACAACAATAT 59.880 40.000 0.00 0.00 0.00 1.28
693 2193 6.347402 CGTCGAAAGTTCTCCACAACAATATT 60.347 38.462 0.00 0.00 0.00 1.28
694 2194 7.360361 GTCGAAAGTTCTCCACAACAATATTT 58.640 34.615 0.00 0.00 0.00 1.40
695 2195 7.860872 GTCGAAAGTTCTCCACAACAATATTTT 59.139 33.333 0.00 0.00 0.00 1.82
696 2196 8.410141 TCGAAAGTTCTCCACAACAATATTTTT 58.590 29.630 0.00 0.00 0.00 1.94
697 2197 9.672086 CGAAAGTTCTCCACAACAATATTTTTA 57.328 29.630 0.00 0.00 0.00 1.52
723 2223 8.504005 ACTTACATGACATAAACTTCTTTTCCG 58.496 33.333 0.00 0.00 0.00 4.30
724 2224 5.699839 ACATGACATAAACTTCTTTTCCGC 58.300 37.500 0.00 0.00 0.00 5.54
725 2225 5.240623 ACATGACATAAACTTCTTTTCCGCA 59.759 36.000 0.00 0.00 0.00 5.69
726 2226 5.759506 TGACATAAACTTCTTTTCCGCAA 57.240 34.783 0.00 0.00 0.00 4.85
727 2227 6.137794 TGACATAAACTTCTTTTCCGCAAA 57.862 33.333 0.00 0.00 0.00 3.68
728 2228 6.565234 TGACATAAACTTCTTTTCCGCAAAA 58.435 32.000 0.00 0.00 0.00 2.44
729 2229 7.036220 TGACATAAACTTCTTTTCCGCAAAAA 58.964 30.769 0.00 0.00 35.56 1.94
753 2253 6.830873 AAAACTTCTTAATCTGCTCATGCT 57.169 33.333 0.00 0.00 40.48 3.79
754 2254 6.830873 AAACTTCTTAATCTGCTCATGCTT 57.169 33.333 0.00 0.00 40.48 3.91
755 2255 7.928307 AAACTTCTTAATCTGCTCATGCTTA 57.072 32.000 0.00 0.00 40.48 3.09
756 2256 7.551035 AACTTCTTAATCTGCTCATGCTTAG 57.449 36.000 0.00 0.00 40.48 2.18
757 2257 5.526846 ACTTCTTAATCTGCTCATGCTTAGC 59.473 40.000 0.00 0.00 40.48 3.09
758 2258 4.053983 TCTTAATCTGCTCATGCTTAGCG 58.946 43.478 0.00 0.00 43.11 4.26
759 2259 2.609427 AATCTGCTCATGCTTAGCGA 57.391 45.000 0.00 2.29 43.11 4.93
760 2260 2.835580 ATCTGCTCATGCTTAGCGAT 57.164 45.000 0.00 4.18 43.11 4.58
761 2261 3.949842 ATCTGCTCATGCTTAGCGATA 57.050 42.857 0.00 0.00 43.11 2.92
762 2262 3.018598 TCTGCTCATGCTTAGCGATAC 57.981 47.619 0.00 0.00 43.11 2.24
763 2263 2.362077 TCTGCTCATGCTTAGCGATACA 59.638 45.455 0.00 0.00 43.11 2.29
764 2264 3.006217 TCTGCTCATGCTTAGCGATACAT 59.994 43.478 0.00 0.00 43.11 2.29
765 2265 4.218417 TCTGCTCATGCTTAGCGATACATA 59.782 41.667 0.00 0.00 43.11 2.29
766 2266 4.881920 TGCTCATGCTTAGCGATACATAA 58.118 39.130 0.00 0.00 43.11 1.90
767 2267 5.482006 TGCTCATGCTTAGCGATACATAAT 58.518 37.500 0.00 0.00 43.11 1.28
768 2268 5.934043 TGCTCATGCTTAGCGATACATAATT 59.066 36.000 0.00 0.00 43.11 1.40
769 2269 7.096551 TGCTCATGCTTAGCGATACATAATTA 58.903 34.615 0.00 0.00 43.11 1.40
770 2270 7.276438 TGCTCATGCTTAGCGATACATAATTAG 59.724 37.037 0.00 0.00 43.11 1.73
771 2271 7.276658 GCTCATGCTTAGCGATACATAATTAGT 59.723 37.037 0.00 0.00 36.03 2.24
772 2272 9.788960 CTCATGCTTAGCGATACATAATTAGTA 57.211 33.333 0.00 0.00 0.00 1.82
773 2273 9.788960 TCATGCTTAGCGATACATAATTAGTAG 57.211 33.333 0.00 0.00 0.00 2.57
774 2274 9.788960 CATGCTTAGCGATACATAATTAGTAGA 57.211 33.333 0.00 0.00 0.00 2.59
809 2309 9.733556 TTTTAGGCAAATTAGTAGAACTGATGA 57.266 29.630 0.00 0.00 0.00 2.92
810 2310 8.718102 TTAGGCAAATTAGTAGAACTGATGAC 57.282 34.615 0.00 0.00 0.00 3.06
811 2311 6.711277 AGGCAAATTAGTAGAACTGATGACA 58.289 36.000 0.00 0.00 0.00 3.58
812 2312 7.168219 AGGCAAATTAGTAGAACTGATGACAA 58.832 34.615 0.00 0.00 0.00 3.18
813 2313 7.665559 AGGCAAATTAGTAGAACTGATGACAAA 59.334 33.333 0.00 0.00 0.00 2.83
814 2314 7.750903 GGCAAATTAGTAGAACTGATGACAAAC 59.249 37.037 0.00 0.00 0.00 2.93
815 2315 8.289618 GCAAATTAGTAGAACTGATGACAAACA 58.710 33.333 0.00 0.00 0.00 2.83
822 2322 9.561069 AGTAGAACTGATGACAAACATTACTTT 57.439 29.630 0.00 0.00 39.56 2.66
823 2323 9.599322 GTAGAACTGATGACAAACATTACTTTG 57.401 33.333 0.00 0.00 39.56 2.77
824 2324 8.450578 AGAACTGATGACAAACATTACTTTGA 57.549 30.769 0.00 0.00 39.56 2.69
825 2325 9.071276 AGAACTGATGACAAACATTACTTTGAT 57.929 29.630 0.00 0.00 39.56 2.57
826 2326 9.121517 GAACTGATGACAAACATTACTTTGATG 57.878 33.333 0.00 0.00 39.56 3.07
827 2327 7.596494 ACTGATGACAAACATTACTTTGATGG 58.404 34.615 0.00 0.00 39.56 3.51
828 2328 6.923012 TGATGACAAACATTACTTTGATGGG 58.077 36.000 0.00 0.00 39.56 4.00
829 2329 5.720371 TGACAAACATTACTTTGATGGGG 57.280 39.130 0.00 0.00 35.46 4.96
830 2330 5.389520 TGACAAACATTACTTTGATGGGGA 58.610 37.500 0.00 0.00 35.46 4.81
831 2331 5.835819 TGACAAACATTACTTTGATGGGGAA 59.164 36.000 0.00 0.00 35.46 3.97
832 2332 6.496565 TGACAAACATTACTTTGATGGGGAAT 59.503 34.615 0.00 0.00 35.46 3.01
833 2333 6.700352 ACAAACATTACTTTGATGGGGAATG 58.300 36.000 0.00 0.00 35.46 2.67
834 2334 6.496565 ACAAACATTACTTTGATGGGGAATGA 59.503 34.615 5.10 0.00 35.46 2.57
838 2338 9.438163 AACATTACTTTGATGGGGAATGAATAT 57.562 29.630 5.10 0.00 0.00 1.28
862 2362 3.556306 GCTACCGGGCCAGCCATA 61.556 66.667 11.50 0.00 37.98 2.74
863 2363 2.743718 CTACCGGGCCAGCCATAG 59.256 66.667 11.50 5.34 37.98 2.23
872 2372 2.158810 CCAGCCATAGGGAGCCCAT 61.159 63.158 8.53 0.00 38.92 4.00
873 2373 1.377994 CAGCCATAGGGAGCCCATC 59.622 63.158 8.53 0.00 38.92 3.51
886 2386 4.145052 GGAGCCCATCCCTAAATTACAAG 58.855 47.826 0.00 0.00 43.01 3.16
888 2388 4.793201 AGCCCATCCCTAAATTACAAGTC 58.207 43.478 0.00 0.00 0.00 3.01
893 2414 4.579647 TCCCTAAATTACAAGTCCACCC 57.420 45.455 0.00 0.00 0.00 4.61
918 2439 3.070576 GCCCATGCCTGAACACCC 61.071 66.667 0.00 0.00 0.00 4.61
919 2440 2.362889 CCCATGCCTGAACACCCC 60.363 66.667 0.00 0.00 0.00 4.95
920 2441 2.440147 CCATGCCTGAACACCCCA 59.560 61.111 0.00 0.00 0.00 4.96
921 2442 1.000739 CCATGCCTGAACACCCCAT 59.999 57.895 0.00 0.00 0.00 4.00
922 2443 0.258484 CCATGCCTGAACACCCCATA 59.742 55.000 0.00 0.00 0.00 2.74
941 2462 3.123620 CTGCAGGCGCTCAGGTTC 61.124 66.667 7.64 0.00 39.64 3.62
942 2463 3.602513 CTGCAGGCGCTCAGGTTCT 62.603 63.158 7.64 0.00 39.64 3.01
958 2491 4.092968 CAGGTTCTTTTAGTACCACATCGC 59.907 45.833 5.47 0.00 38.04 4.58
959 2492 3.373130 GGTTCTTTTAGTACCACATCGCC 59.627 47.826 0.00 0.00 35.92 5.54
960 2493 3.965379 TCTTTTAGTACCACATCGCCA 57.035 42.857 0.00 0.00 0.00 5.69
961 2494 3.592059 TCTTTTAGTACCACATCGCCAC 58.408 45.455 0.00 0.00 0.00 5.01
968 2501 1.227943 CCACATCGCCACCATAGGG 60.228 63.158 0.00 0.00 41.29 3.53
978 2511 3.243724 GCCACCATAGGGAGATTAGAGT 58.756 50.000 0.00 0.00 38.05 3.24
979 2512 3.007398 GCCACCATAGGGAGATTAGAGTG 59.993 52.174 0.00 0.00 38.05 3.51
980 2513 3.580458 CCACCATAGGGAGATTAGAGTGG 59.420 52.174 0.00 0.00 38.05 4.00
981 2514 4.483950 CACCATAGGGAGATTAGAGTGGA 58.516 47.826 0.00 0.00 38.05 4.02
1236 7882 6.149142 TGGGTTTATTTGAAAGATGCATTTGC 59.851 34.615 0.00 0.00 42.50 3.68
1283 7949 2.288640 GCATTTTCTGTGAAGCTTGGCT 60.289 45.455 2.10 0.00 42.56 4.75
1443 8429 9.904198 TGATTGGAATAGTGTAATTGAGATCAA 57.096 29.630 0.00 0.00 40.51 2.57
1518 8505 1.999648 ACATGTCCTGTGCCAAACAT 58.000 45.000 0.00 0.00 38.39 2.71
1583 8570 0.175760 TCCCATGCTTCAGTCTACGC 59.824 55.000 0.00 0.00 0.00 4.42
1659 8646 6.386654 GCAATACGGAAAAGAGGAAATGAAA 58.613 36.000 0.00 0.00 0.00 2.69
1717 8704 7.041372 TCCAACAGCAAGAGTACTGAAATAAAC 60.041 37.037 0.00 0.00 37.35 2.01
1792 8779 1.686052 GAATGACCGAGGAGCTCTGAT 59.314 52.381 14.64 0.00 0.00 2.90
1842 8829 3.730761 GGCATCGGCATCGGCATC 61.731 66.667 0.00 0.00 43.71 3.91
1843 8830 4.081030 GCATCGGCATCGGCATCG 62.081 66.667 0.00 0.00 43.71 3.84
1844 8831 3.417224 CATCGGCATCGGCATCGG 61.417 66.667 0.00 0.00 43.71 4.18
1848 8835 3.730761 GGCATCGGCATCGGCATC 61.731 66.667 0.00 0.00 43.71 3.91
1849 8836 4.081030 GCATCGGCATCGGCATCG 62.081 66.667 0.00 0.00 43.71 3.84
1850 8837 3.417224 CATCGGCATCGGCATCGG 61.417 66.667 0.00 0.00 43.71 4.18
1854 8841 3.730761 GGCATCGGCATCGGCATC 61.731 66.667 0.00 0.00 43.71 3.91
1855 8842 4.081030 GCATCGGCATCGGCATCG 62.081 66.667 0.00 0.00 43.71 3.84
1856 8843 3.417224 CATCGGCATCGGCATCGG 61.417 66.667 0.00 0.00 43.71 4.18
1860 8847 3.730761 GGCATCGGCATCGGCATC 61.731 66.667 0.00 0.00 43.71 3.91
1861 8848 4.081030 GCATCGGCATCGGCATCG 62.081 66.667 0.00 0.00 43.71 3.84
2025 9012 3.869246 GTGATAACGTGGGATTCGACATT 59.131 43.478 0.00 0.00 0.00 2.71
2112 9099 4.029520 ACTGGCATCTACTCACTCTGATT 58.970 43.478 0.00 0.00 0.00 2.57
2113 9100 4.469227 ACTGGCATCTACTCACTCTGATTT 59.531 41.667 0.00 0.00 0.00 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.770010 GGATCCAATCCCACAACTTAAACA 59.230 41.667 6.95 0.00 43.88 2.83
14 15 6.318112 AGAAATATTCCCCAAGGATCCAATC 58.682 40.000 15.82 0.00 43.54 2.67
16 17 5.195553 TGAGAAATATTCCCCAAGGATCCAA 59.804 40.000 15.82 0.00 43.54 3.53
17 18 4.731416 TGAGAAATATTCCCCAAGGATCCA 59.269 41.667 15.82 0.00 43.54 3.41
18 19 5.324832 TGAGAAATATTCCCCAAGGATCC 57.675 43.478 2.48 2.48 43.54 3.36
19 20 6.890979 CTTGAGAAATATTCCCCAAGGATC 57.109 41.667 12.28 0.00 43.54 3.36
23 24 5.760131 AGTCCTTGAGAAATATTCCCCAAG 58.240 41.667 12.81 12.81 39.00 3.61
24 25 5.629133 CGAGTCCTTGAGAAATATTCCCCAA 60.629 44.000 0.00 0.00 0.00 4.12
25 26 4.141711 CGAGTCCTTGAGAAATATTCCCCA 60.142 45.833 0.00 0.00 0.00 4.96
26 27 4.141688 ACGAGTCCTTGAGAAATATTCCCC 60.142 45.833 0.00 0.00 0.00 4.81
27 28 5.024785 ACGAGTCCTTGAGAAATATTCCC 57.975 43.478 0.00 0.00 0.00 3.97
28 29 6.675728 GCAAACGAGTCCTTGAGAAATATTCC 60.676 42.308 4.22 0.00 0.00 3.01
31 32 5.122396 GTGCAAACGAGTCCTTGAGAAATAT 59.878 40.000 0.00 0.00 0.00 1.28
34 35 2.612212 GTGCAAACGAGTCCTTGAGAAA 59.388 45.455 0.00 0.00 0.00 2.52
35 36 2.158957 AGTGCAAACGAGTCCTTGAGAA 60.159 45.455 0.00 0.00 0.00 2.87
36 37 1.412710 AGTGCAAACGAGTCCTTGAGA 59.587 47.619 0.00 0.00 0.00 3.27
37 38 1.871080 AGTGCAAACGAGTCCTTGAG 58.129 50.000 0.00 0.00 0.00 3.02
38 39 2.101750 TGTAGTGCAAACGAGTCCTTGA 59.898 45.455 0.00 0.00 0.00 3.02
39 40 2.479837 TGTAGTGCAAACGAGTCCTTG 58.520 47.619 0.00 0.00 0.00 3.61
40 41 2.902705 TGTAGTGCAAACGAGTCCTT 57.097 45.000 0.00 0.00 0.00 3.36
41 42 3.402628 AATGTAGTGCAAACGAGTCCT 57.597 42.857 0.00 0.00 0.00 3.85
44 45 5.775686 TGTACTAATGTAGTGCAAACGAGT 58.224 37.500 4.03 0.00 46.10 4.18
52 53 6.479990 TGCATTGAGATGTACTAATGTAGTGC 59.520 38.462 0.00 0.00 41.11 4.40
53 54 7.922811 TCTGCATTGAGATGTACTAATGTAGTG 59.077 37.037 11.63 3.07 41.18 2.74
55 56 8.877808 TTCTGCATTGAGATGTACTAATGTAG 57.122 34.615 0.00 0.00 41.52 2.74
56 57 9.836864 ATTTCTGCATTGAGATGTACTAATGTA 57.163 29.630 0.00 0.00 35.63 2.29
57 58 8.743085 ATTTCTGCATTGAGATGTACTAATGT 57.257 30.769 0.00 0.00 35.63 2.71
67 950 6.315393 GCCAAATTGAATTTCTGCATTGAGAT 59.685 34.615 13.68 0.00 31.11 2.75
71 954 5.642063 AGAGCCAAATTGAATTTCTGCATTG 59.358 36.000 18.30 1.78 32.41 2.82
72 955 5.801380 AGAGCCAAATTGAATTTCTGCATT 58.199 33.333 18.30 7.71 32.41 3.56
73 956 5.416271 AGAGCCAAATTGAATTTCTGCAT 57.584 34.783 18.30 8.21 32.41 3.96
74 957 4.877378 AGAGCCAAATTGAATTTCTGCA 57.123 36.364 18.30 0.00 32.41 4.41
76 959 4.860907 CCGAAGAGCCAAATTGAATTTCTG 59.139 41.667 0.00 0.00 0.00 3.02
78 961 5.059404 TCCGAAGAGCCAAATTGAATTTC 57.941 39.130 0.00 0.00 0.00 2.17
79 962 5.064441 CTCCGAAGAGCCAAATTGAATTT 57.936 39.130 0.00 0.00 32.13 1.82
80 963 4.708726 CTCCGAAGAGCCAAATTGAATT 57.291 40.909 0.00 0.00 32.13 2.17
151 1651 8.739972 GGGTGTGACAATAAAGACATCTATTTT 58.260 33.333 0.00 0.00 0.00 1.82
152 1652 7.888021 TGGGTGTGACAATAAAGACATCTATTT 59.112 33.333 0.00 0.00 0.00 1.40
153 1653 7.402054 TGGGTGTGACAATAAAGACATCTATT 58.598 34.615 0.00 0.00 0.00 1.73
154 1654 6.957631 TGGGTGTGACAATAAAGACATCTAT 58.042 36.000 0.00 0.00 0.00 1.98
155 1655 6.367374 TGGGTGTGACAATAAAGACATCTA 57.633 37.500 0.00 0.00 0.00 1.98
156 1656 5.241403 TGGGTGTGACAATAAAGACATCT 57.759 39.130 0.00 0.00 0.00 2.90
157 1657 5.957842 TTGGGTGTGACAATAAAGACATC 57.042 39.130 0.00 0.00 0.00 3.06
158 1658 6.690530 CATTTGGGTGTGACAATAAAGACAT 58.309 36.000 0.00 0.00 0.00 3.06
159 1659 5.508825 GCATTTGGGTGTGACAATAAAGACA 60.509 40.000 0.00 0.00 0.00 3.41
160 1660 4.923281 GCATTTGGGTGTGACAATAAAGAC 59.077 41.667 0.00 0.00 0.00 3.01
161 1661 4.832266 AGCATTTGGGTGTGACAATAAAGA 59.168 37.500 0.00 0.00 0.00 2.52
162 1662 5.138125 AGCATTTGGGTGTGACAATAAAG 57.862 39.130 0.00 0.00 0.00 1.85
163 1663 6.663093 AGATAGCATTTGGGTGTGACAATAAA 59.337 34.615 0.00 0.00 0.00 1.40
164 1664 6.095300 CAGATAGCATTTGGGTGTGACAATAA 59.905 38.462 0.00 0.00 0.00 1.40
165 1665 5.589855 CAGATAGCATTTGGGTGTGACAATA 59.410 40.000 0.00 0.00 0.00 1.90
166 1666 4.400251 CAGATAGCATTTGGGTGTGACAAT 59.600 41.667 0.00 0.00 0.00 2.71
167 1667 3.758023 CAGATAGCATTTGGGTGTGACAA 59.242 43.478 0.00 0.00 0.00 3.18
168 1668 3.346315 CAGATAGCATTTGGGTGTGACA 58.654 45.455 0.00 0.00 0.00 3.58
169 1669 2.098117 GCAGATAGCATTTGGGTGTGAC 59.902 50.000 0.00 0.00 44.79 3.67
170 1670 2.368439 GCAGATAGCATTTGGGTGTGA 58.632 47.619 0.00 0.00 44.79 3.58
171 1671 2.857592 GCAGATAGCATTTGGGTGTG 57.142 50.000 0.00 0.00 44.79 3.82
182 1682 5.505173 TCCAGCTAAAAATTGCAGATAGC 57.495 39.130 9.09 9.09 45.96 2.97
183 1683 6.474751 GCTTTCCAGCTAAAAATTGCAGATAG 59.525 38.462 0.00 0.00 43.51 2.08
184 1684 6.332630 GCTTTCCAGCTAAAAATTGCAGATA 58.667 36.000 0.00 0.00 43.51 1.98
185 1685 5.173664 GCTTTCCAGCTAAAAATTGCAGAT 58.826 37.500 0.00 0.00 43.51 2.90
186 1686 4.559153 GCTTTCCAGCTAAAAATTGCAGA 58.441 39.130 0.00 0.00 43.51 4.26
187 1687 4.916099 GCTTTCCAGCTAAAAATTGCAG 57.084 40.909 0.00 0.00 43.51 4.41
200 1700 5.531634 TGTCAAAATGCTTAAGCTTTCCAG 58.468 37.500 26.90 18.17 42.66 3.86
201 1701 5.528043 TGTCAAAATGCTTAAGCTTTCCA 57.472 34.783 26.90 17.13 42.66 3.53
202 1702 5.928264 ACATGTCAAAATGCTTAAGCTTTCC 59.072 36.000 26.90 15.22 42.66 3.13
203 1703 6.421801 ACACATGTCAAAATGCTTAAGCTTTC 59.578 34.615 26.90 15.01 42.66 2.62
204 1704 6.201425 CACACATGTCAAAATGCTTAAGCTTT 59.799 34.615 26.90 23.16 42.66 3.51
205 1705 5.693104 CACACATGTCAAAATGCTTAAGCTT 59.307 36.000 26.90 18.70 42.66 3.74
206 1706 5.009911 TCACACATGTCAAAATGCTTAAGCT 59.990 36.000 26.90 10.88 42.66 3.74
207 1707 5.221880 TCACACATGTCAAAATGCTTAAGC 58.778 37.500 20.84 20.84 42.50 3.09
208 1708 7.697352 TTTCACACATGTCAAAATGCTTAAG 57.303 32.000 0.00 0.00 0.00 1.85
209 1709 8.484641 TTTTTCACACATGTCAAAATGCTTAA 57.515 26.923 0.00 0.00 0.00 1.85
211 1711 6.981762 TTTTTCACACATGTCAAAATGCTT 57.018 29.167 0.00 0.00 0.00 3.91
237 1737 6.378582 AGTATAACATTTGGCGTTTGACTTG 58.621 36.000 0.00 0.00 0.00 3.16
240 1740 8.905103 ATTAAGTATAACATTTGGCGTTTGAC 57.095 30.769 0.00 0.00 0.00 3.18
274 1774 0.537143 AGCAATGCTTCACCGGTGAA 60.537 50.000 39.81 39.81 46.27 3.18
275 1775 0.323302 TAGCAATGCTTCACCGGTGA 59.677 50.000 33.23 33.23 40.44 4.02
276 1776 1.331756 GATAGCAATGCTTCACCGGTG 59.668 52.381 29.26 29.26 40.44 4.94
278 1778 1.869767 GAGATAGCAATGCTTCACCGG 59.130 52.381 14.85 0.00 40.44 5.28
280 1780 2.555199 ACGAGATAGCAATGCTTCACC 58.445 47.619 14.85 6.45 40.44 4.02
281 1781 4.582459 GAAACGAGATAGCAATGCTTCAC 58.418 43.478 14.85 8.65 40.44 3.18
283 1783 3.842796 GCGAAACGAGATAGCAATGCTTC 60.843 47.826 14.85 10.92 40.44 3.86
284 1784 2.030946 GCGAAACGAGATAGCAATGCTT 59.969 45.455 14.85 0.76 40.44 3.91
285 1785 1.594862 GCGAAACGAGATAGCAATGCT 59.405 47.619 13.92 13.92 43.41 3.79
287 1787 3.245990 TCATGCGAAACGAGATAGCAATG 59.754 43.478 0.00 0.00 41.37 2.82
289 1789 2.887337 TCATGCGAAACGAGATAGCAA 58.113 42.857 0.00 0.00 41.37 3.91
291 1791 3.925688 TTTCATGCGAAACGAGATAGC 57.074 42.857 0.00 0.00 36.19 2.97
292 1792 7.481483 TGAAAATTTTCATGCGAAACGAGATAG 59.519 33.333 26.01 0.00 41.88 2.08
293 1793 7.301789 TGAAAATTTTCATGCGAAACGAGATA 58.698 30.769 26.01 1.55 41.88 1.98
294 1794 6.148948 TGAAAATTTTCATGCGAAACGAGAT 58.851 32.000 26.01 0.00 41.88 2.75
295 1795 5.515184 TGAAAATTTTCATGCGAAACGAGA 58.485 33.333 26.01 2.56 41.88 4.04
296 1796 5.804449 TGAAAATTTTCATGCGAAACGAG 57.196 34.783 26.01 0.00 41.88 4.18
319 1819 1.308998 GCCAGTGTAACAAGTGTGCT 58.691 50.000 0.00 0.00 41.43 4.40
320 1820 1.021202 TGCCAGTGTAACAAGTGTGC 58.979 50.000 0.00 0.00 41.43 4.57
321 1821 2.877786 TCATGCCAGTGTAACAAGTGTG 59.122 45.455 0.00 0.00 41.43 3.82
325 1825 4.456911 AGATGTTCATGCCAGTGTAACAAG 59.543 41.667 0.00 0.00 41.43 3.16
326 1826 4.397420 AGATGTTCATGCCAGTGTAACAA 58.603 39.130 0.00 0.00 41.43 2.83
327 1827 4.019792 AGATGTTCATGCCAGTGTAACA 57.980 40.909 0.00 0.00 41.43 2.41
328 1828 4.935205 TGTAGATGTTCATGCCAGTGTAAC 59.065 41.667 0.00 0.00 0.00 2.50
329 1829 5.159273 TGTAGATGTTCATGCCAGTGTAA 57.841 39.130 0.00 0.00 0.00 2.41
330 1830 4.817318 TGTAGATGTTCATGCCAGTGTA 57.183 40.909 0.00 0.00 0.00 2.90
332 1832 5.375417 TTTTGTAGATGTTCATGCCAGTG 57.625 39.130 0.00 0.00 0.00 3.66
333 1833 6.594788 ATTTTTGTAGATGTTCATGCCAGT 57.405 33.333 0.00 0.00 0.00 4.00
334 1834 8.984891 TTTATTTTTGTAGATGTTCATGCCAG 57.015 30.769 0.00 0.00 0.00 4.85
335 1835 9.941325 ATTTTATTTTTGTAGATGTTCATGCCA 57.059 25.926 0.00 0.00 0.00 4.92
381 1881 8.766151 GCTTTGGATAAACCGTAAATTCAAAAA 58.234 29.630 0.00 0.00 42.61 1.94
382 1882 7.385478 GGCTTTGGATAAACCGTAAATTCAAAA 59.615 33.333 0.00 0.00 42.61 2.44
383 1883 6.869388 GGCTTTGGATAAACCGTAAATTCAAA 59.131 34.615 0.00 0.00 42.61 2.69
384 1884 6.015350 TGGCTTTGGATAAACCGTAAATTCAA 60.015 34.615 0.00 0.00 42.61 2.69
385 1885 5.477291 TGGCTTTGGATAAACCGTAAATTCA 59.523 36.000 0.00 0.00 42.61 2.57
386 1886 5.956642 TGGCTTTGGATAAACCGTAAATTC 58.043 37.500 0.00 0.00 42.61 2.17
387 1887 5.986501 TGGCTTTGGATAAACCGTAAATT 57.013 34.783 0.00 0.00 42.61 1.82
388 1888 5.986501 TTGGCTTTGGATAAACCGTAAAT 57.013 34.783 0.00 0.00 42.61 1.40
389 1889 5.786264 TTTGGCTTTGGATAAACCGTAAA 57.214 34.783 0.00 0.00 42.61 2.01
390 1890 5.530712 GTTTTGGCTTTGGATAAACCGTAA 58.469 37.500 0.00 0.00 42.61 3.18
391 1891 4.320348 CGTTTTGGCTTTGGATAAACCGTA 60.320 41.667 0.00 0.00 42.61 4.02
392 1892 3.551250 CGTTTTGGCTTTGGATAAACCGT 60.551 43.478 0.00 0.00 42.61 4.83
393 1893 2.983803 CGTTTTGGCTTTGGATAAACCG 59.016 45.455 0.00 0.00 42.61 4.44
394 1894 3.322369 CCGTTTTGGCTTTGGATAAACC 58.678 45.455 0.00 0.00 39.54 3.27
407 1907 0.109781 CGTTGAGATGGCCGTTTTGG 60.110 55.000 0.00 0.00 42.50 3.28
408 1908 0.109781 CCGTTGAGATGGCCGTTTTG 60.110 55.000 0.00 0.00 0.00 2.44
409 1909 0.250553 TCCGTTGAGATGGCCGTTTT 60.251 50.000 0.00 0.00 31.55 2.43
410 1910 0.250553 TTCCGTTGAGATGGCCGTTT 60.251 50.000 0.00 0.00 31.55 3.60
411 1911 0.035439 ATTCCGTTGAGATGGCCGTT 60.035 50.000 0.00 0.00 31.55 4.44
412 1912 0.828022 TATTCCGTTGAGATGGCCGT 59.172 50.000 0.00 0.00 31.55 5.68
413 1913 1.948104 TTATTCCGTTGAGATGGCCG 58.052 50.000 0.00 0.00 31.55 6.13
414 1914 4.580580 AGAATTTATTCCGTTGAGATGGCC 59.419 41.667 0.00 0.00 37.51 5.36
415 1915 5.757850 AGAATTTATTCCGTTGAGATGGC 57.242 39.130 0.00 0.00 37.51 4.40
416 1916 9.056005 TCAATAGAATTTATTCCGTTGAGATGG 57.944 33.333 12.38 0.00 36.56 3.51
417 1917 9.869844 GTCAATAGAATTTATTCCGTTGAGATG 57.130 33.333 14.95 1.28 39.32 2.90
418 1918 9.838339 AGTCAATAGAATTTATTCCGTTGAGAT 57.162 29.630 14.95 8.47 39.32 2.75
419 1919 9.314321 GAGTCAATAGAATTTATTCCGTTGAGA 57.686 33.333 14.95 0.85 39.32 3.27
420 1920 9.098355 TGAGTCAATAGAATTTATTCCGTTGAG 57.902 33.333 14.95 0.00 39.32 3.02
421 1921 9.443323 TTGAGTCAATAGAATTTATTCCGTTGA 57.557 29.630 0.08 12.38 37.85 3.18
424 1924 8.674607 GGTTTGAGTCAATAGAATTTATTCCGT 58.325 33.333 6.36 0.00 37.51 4.69
425 1925 8.893727 AGGTTTGAGTCAATAGAATTTATTCCG 58.106 33.333 6.36 0.00 37.51 4.30
430 1930 9.231297 CCAAGAGGTTTGAGTCAATAGAATTTA 57.769 33.333 6.36 0.00 0.00 1.40
431 1931 7.944554 TCCAAGAGGTTTGAGTCAATAGAATTT 59.055 33.333 6.36 0.00 35.89 1.82
432 1932 7.461749 TCCAAGAGGTTTGAGTCAATAGAATT 58.538 34.615 6.36 0.00 35.89 2.17
433 1933 7.020827 TCCAAGAGGTTTGAGTCAATAGAAT 57.979 36.000 6.36 0.00 35.89 2.40
434 1934 6.433847 TCCAAGAGGTTTGAGTCAATAGAA 57.566 37.500 6.36 0.00 35.89 2.10
435 1935 6.627087 ATCCAAGAGGTTTGAGTCAATAGA 57.373 37.500 6.36 0.00 35.89 1.98
436 1936 8.970859 ATAATCCAAGAGGTTTGAGTCAATAG 57.029 34.615 6.36 0.00 35.89 1.73
437 1937 9.753674 AAATAATCCAAGAGGTTTGAGTCAATA 57.246 29.630 6.36 0.00 35.89 1.90
438 1938 8.655935 AAATAATCCAAGAGGTTTGAGTCAAT 57.344 30.769 6.36 0.00 35.89 2.57
439 1939 8.477419 AAAATAATCCAAGAGGTTTGAGTCAA 57.523 30.769 0.08 0.08 35.89 3.18
440 1940 8.477419 AAAAATAATCCAAGAGGTTTGAGTCA 57.523 30.769 0.00 0.00 35.89 3.41
441 1941 8.797438 AGAAAAATAATCCAAGAGGTTTGAGTC 58.203 33.333 0.00 0.00 35.89 3.36
442 1942 8.712228 AGAAAAATAATCCAAGAGGTTTGAGT 57.288 30.769 0.00 0.00 35.89 3.41
443 1943 8.796475 TGAGAAAAATAATCCAAGAGGTTTGAG 58.204 33.333 0.00 0.00 35.89 3.02
444 1944 8.704849 TGAGAAAAATAATCCAAGAGGTTTGA 57.295 30.769 0.00 0.00 35.89 2.69
445 1945 9.933723 ATTGAGAAAAATAATCCAAGAGGTTTG 57.066 29.630 0.00 0.00 35.89 2.93
447 1947 9.312904 TGATTGAGAAAAATAATCCAAGAGGTT 57.687 29.630 0.00 0.00 35.89 3.50
448 1948 8.884124 TGATTGAGAAAAATAATCCAAGAGGT 57.116 30.769 0.00 0.00 35.89 3.85
454 1954 9.912634 GTGTCTTTGATTGAGAAAAATAATCCA 57.087 29.630 0.00 0.00 31.47 3.41
466 1966 7.969536 TTCTCCTAAAGTGTCTTTGATTGAG 57.030 36.000 5.19 5.77 0.00 3.02
467 1967 8.924511 ATTTCTCCTAAAGTGTCTTTGATTGA 57.075 30.769 5.19 0.00 0.00 2.57
468 1968 9.617975 GAATTTCTCCTAAAGTGTCTTTGATTG 57.382 33.333 5.19 0.00 0.00 2.67
473 1973 9.579932 AGATTGAATTTCTCCTAAAGTGTCTTT 57.420 29.630 0.00 0.59 0.00 2.52
476 1976 8.787852 ACAAGATTGAATTTCTCCTAAAGTGTC 58.212 33.333 0.00 0.00 0.00 3.67
480 1980 9.672673 TCCTACAAGATTGAATTTCTCCTAAAG 57.327 33.333 0.00 0.00 0.00 1.85
497 1997 2.637382 TGCACACTCCAATCCTACAAGA 59.363 45.455 0.00 0.00 0.00 3.02
498 1998 3.057969 TGCACACTCCAATCCTACAAG 57.942 47.619 0.00 0.00 0.00 3.16
499 1999 3.719268 ATGCACACTCCAATCCTACAA 57.281 42.857 0.00 0.00 0.00 2.41
500 2000 3.346315 CAATGCACACTCCAATCCTACA 58.654 45.455 0.00 0.00 0.00 2.74
501 2001 2.684881 CCAATGCACACTCCAATCCTAC 59.315 50.000 0.00 0.00 0.00 3.18
502 2002 2.575735 TCCAATGCACACTCCAATCCTA 59.424 45.455 0.00 0.00 0.00 2.94
503 2003 1.355381 TCCAATGCACACTCCAATCCT 59.645 47.619 0.00 0.00 0.00 3.24
504 2004 1.838112 TCCAATGCACACTCCAATCC 58.162 50.000 0.00 0.00 0.00 3.01
505 2005 3.444742 TGATTCCAATGCACACTCCAATC 59.555 43.478 0.00 0.00 0.00 2.67
506 2006 3.433343 TGATTCCAATGCACACTCCAAT 58.567 40.909 0.00 0.00 0.00 3.16
509 2009 2.756760 ACATGATTCCAATGCACACTCC 59.243 45.455 0.00 0.00 0.00 3.85
511 2011 4.877378 AAACATGATTCCAATGCACACT 57.123 36.364 0.00 0.00 0.00 3.55
512 2012 5.927954 AAAAACATGATTCCAATGCACAC 57.072 34.783 0.00 0.00 0.00 3.82
575 2075 5.772521 CACTGTTTGCTACTATGGCTTTTT 58.227 37.500 0.00 0.00 0.00 1.94
576 2076 5.376854 CACTGTTTGCTACTATGGCTTTT 57.623 39.130 0.00 0.00 0.00 2.27
590 2090 7.535258 GTCTATTAGAATGTTGTGCACTGTTTG 59.465 37.037 19.41 0.00 0.00 2.93
591 2091 7.228507 TGTCTATTAGAATGTTGTGCACTGTTT 59.771 33.333 19.41 6.50 0.00 2.83
592 2092 6.710295 TGTCTATTAGAATGTTGTGCACTGTT 59.290 34.615 19.41 7.31 0.00 3.16
593 2093 6.230472 TGTCTATTAGAATGTTGTGCACTGT 58.770 36.000 19.41 0.00 0.00 3.55
594 2094 6.726258 TGTCTATTAGAATGTTGTGCACTG 57.274 37.500 19.41 0.00 0.00 3.66
595 2095 7.928307 AATGTCTATTAGAATGTTGTGCACT 57.072 32.000 19.41 0.00 0.00 4.40
596 2096 8.970691 AAAATGTCTATTAGAATGTTGTGCAC 57.029 30.769 10.75 10.75 0.00 4.57
597 2097 9.409312 CAAAAATGTCTATTAGAATGTTGTGCA 57.591 29.630 0.00 0.00 0.00 4.57
598 2098 8.375465 GCAAAAATGTCTATTAGAATGTTGTGC 58.625 33.333 9.29 9.29 0.00 4.57
599 2099 9.630098 AGCAAAAATGTCTATTAGAATGTTGTG 57.370 29.630 0.00 0.00 0.00 3.33
639 2139 9.322773 TGTTTGATTTGCATGATTTCTAAAACA 57.677 25.926 0.00 2.10 32.11 2.83
640 2140 9.801714 CTGTTTGATTTGCATGATTTCTAAAAC 57.198 29.630 0.00 0.00 0.00 2.43
641 2141 9.761504 TCTGTTTGATTTGCATGATTTCTAAAA 57.238 25.926 0.00 0.00 0.00 1.52
642 2142 9.195411 GTCTGTTTGATTTGCATGATTTCTAAA 57.805 29.630 0.00 0.00 0.00 1.85
643 2143 7.538334 CGTCTGTTTGATTTGCATGATTTCTAA 59.462 33.333 0.00 0.00 0.00 2.10
644 2144 7.022979 CGTCTGTTTGATTTGCATGATTTCTA 58.977 34.615 0.00 0.00 0.00 2.10
645 2145 5.860182 CGTCTGTTTGATTTGCATGATTTCT 59.140 36.000 0.00 0.00 0.00 2.52
646 2146 5.630680 ACGTCTGTTTGATTTGCATGATTTC 59.369 36.000 0.00 0.00 0.00 2.17
647 2147 5.531634 ACGTCTGTTTGATTTGCATGATTT 58.468 33.333 0.00 0.00 0.00 2.17
648 2148 5.125100 ACGTCTGTTTGATTTGCATGATT 57.875 34.783 0.00 0.00 0.00 2.57
649 2149 4.669965 CGACGTCTGTTTGATTTGCATGAT 60.670 41.667 14.70 0.00 0.00 2.45
650 2150 3.363871 CGACGTCTGTTTGATTTGCATGA 60.364 43.478 14.70 0.00 0.00 3.07
651 2151 2.904319 CGACGTCTGTTTGATTTGCATG 59.096 45.455 14.70 0.00 0.00 4.06
652 2152 2.805671 TCGACGTCTGTTTGATTTGCAT 59.194 40.909 14.70 0.00 0.00 3.96
653 2153 2.205911 TCGACGTCTGTTTGATTTGCA 58.794 42.857 14.70 0.00 0.00 4.08
654 2154 2.941891 TCGACGTCTGTTTGATTTGC 57.058 45.000 14.70 0.00 0.00 3.68
655 2155 4.833126 ACTTTCGACGTCTGTTTGATTTG 58.167 39.130 14.70 0.00 0.00 2.32
656 2156 5.293569 AGAACTTTCGACGTCTGTTTGATTT 59.706 36.000 14.70 0.00 0.00 2.17
657 2157 4.809426 AGAACTTTCGACGTCTGTTTGATT 59.191 37.500 14.70 0.00 0.00 2.57
658 2158 4.369182 AGAACTTTCGACGTCTGTTTGAT 58.631 39.130 14.70 0.00 0.00 2.57
659 2159 3.777478 AGAACTTTCGACGTCTGTTTGA 58.223 40.909 14.70 0.00 0.00 2.69
660 2160 3.060473 GGAGAACTTTCGACGTCTGTTTG 60.060 47.826 14.70 0.00 0.00 2.93
661 2161 3.121544 GGAGAACTTTCGACGTCTGTTT 58.878 45.455 14.70 0.00 0.00 2.83
662 2162 2.100252 TGGAGAACTTTCGACGTCTGTT 59.900 45.455 14.70 12.48 0.00 3.16
663 2163 1.679680 TGGAGAACTTTCGACGTCTGT 59.320 47.619 14.70 4.39 0.00 3.41
664 2164 2.052157 GTGGAGAACTTTCGACGTCTG 58.948 52.381 14.70 7.51 0.00 3.51
665 2165 1.679680 TGTGGAGAACTTTCGACGTCT 59.320 47.619 14.70 0.00 0.00 4.18
666 2166 2.129823 TGTGGAGAACTTTCGACGTC 57.870 50.000 5.18 5.18 0.00 4.34
667 2167 2.199236 GTTGTGGAGAACTTTCGACGT 58.801 47.619 0.00 0.00 0.00 4.34
668 2168 2.198406 TGTTGTGGAGAACTTTCGACG 58.802 47.619 0.00 0.00 0.00 5.12
669 2169 4.813296 ATTGTTGTGGAGAACTTTCGAC 57.187 40.909 0.00 0.00 0.00 4.20
670 2170 7.504924 AAATATTGTTGTGGAGAACTTTCGA 57.495 32.000 0.00 0.00 0.00 3.71
671 2171 8.574196 AAAAATATTGTTGTGGAGAACTTTCG 57.426 30.769 0.00 0.00 0.00 3.46
697 2197 8.504005 CGGAAAAGAAGTTTATGTCATGTAAGT 58.496 33.333 0.00 0.00 0.00 2.24
698 2198 7.481798 GCGGAAAAGAAGTTTATGTCATGTAAG 59.518 37.037 0.00 0.00 0.00 2.34
699 2199 7.041030 TGCGGAAAAGAAGTTTATGTCATGTAA 60.041 33.333 0.00 0.00 0.00 2.41
700 2200 6.428465 TGCGGAAAAGAAGTTTATGTCATGTA 59.572 34.615 0.00 0.00 0.00 2.29
701 2201 5.240623 TGCGGAAAAGAAGTTTATGTCATGT 59.759 36.000 0.00 0.00 0.00 3.21
702 2202 5.698832 TGCGGAAAAGAAGTTTATGTCATG 58.301 37.500 0.00 0.00 0.00 3.07
703 2203 5.957842 TGCGGAAAAGAAGTTTATGTCAT 57.042 34.783 0.00 0.00 0.00 3.06
704 2204 5.759506 TTGCGGAAAAGAAGTTTATGTCA 57.240 34.783 0.00 0.00 0.00 3.58
705 2205 7.458038 TTTTTGCGGAAAAGAAGTTTATGTC 57.542 32.000 14.59 0.00 32.44 3.06
729 2229 7.224522 AGCATGAGCAGATTAAGAAGTTTTT 57.775 32.000 0.00 0.00 45.49 1.94
730 2230 6.830873 AGCATGAGCAGATTAAGAAGTTTT 57.169 33.333 0.00 0.00 45.49 2.43
731 2231 6.830873 AAGCATGAGCAGATTAAGAAGTTT 57.169 33.333 0.00 0.00 45.49 2.66
732 2232 6.038050 GCTAAGCATGAGCAGATTAAGAAGTT 59.962 38.462 0.00 0.00 44.25 2.66
733 2233 5.526846 GCTAAGCATGAGCAGATTAAGAAGT 59.473 40.000 0.00 0.00 44.25 3.01
734 2234 5.333187 CGCTAAGCATGAGCAGATTAAGAAG 60.333 44.000 0.00 0.00 45.55 2.85
735 2235 4.509230 CGCTAAGCATGAGCAGATTAAGAA 59.491 41.667 0.00 0.00 45.55 2.52
736 2236 4.053983 CGCTAAGCATGAGCAGATTAAGA 58.946 43.478 0.00 0.00 45.55 2.10
737 2237 4.053983 TCGCTAAGCATGAGCAGATTAAG 58.946 43.478 0.00 0.00 45.55 1.85
738 2238 4.058721 TCGCTAAGCATGAGCAGATTAA 57.941 40.909 0.00 0.00 45.55 1.40
739 2239 3.733443 TCGCTAAGCATGAGCAGATTA 57.267 42.857 0.00 0.00 45.55 1.75
740 2240 2.609427 TCGCTAAGCATGAGCAGATT 57.391 45.000 0.00 0.00 45.55 2.40
741 2241 2.835580 ATCGCTAAGCATGAGCAGAT 57.164 45.000 0.00 2.03 45.55 2.90
742 2242 2.362077 TGTATCGCTAAGCATGAGCAGA 59.638 45.455 0.00 0.00 45.55 4.26
743 2243 2.747436 TGTATCGCTAAGCATGAGCAG 58.253 47.619 0.00 0.00 45.55 4.24
744 2244 2.888834 TGTATCGCTAAGCATGAGCA 57.111 45.000 0.00 0.00 45.55 4.26
745 2245 6.414408 AATTATGTATCGCTAAGCATGAGC 57.586 37.500 0.00 0.00 40.08 4.26
746 2246 8.694975 ACTAATTATGTATCGCTAAGCATGAG 57.305 34.615 0.00 0.00 0.00 2.90
747 2247 9.788960 CTACTAATTATGTATCGCTAAGCATGA 57.211 33.333 0.00 0.00 0.00 3.07
748 2248 9.788960 TCTACTAATTATGTATCGCTAAGCATG 57.211 33.333 0.00 0.00 0.00 4.06
783 2283 9.733556 TCATCAGTTCTACTAATTTGCCTAAAA 57.266 29.630 0.00 0.00 0.00 1.52
784 2284 9.162764 GTCATCAGTTCTACTAATTTGCCTAAA 57.837 33.333 0.00 0.00 0.00 1.85
785 2285 8.318412 TGTCATCAGTTCTACTAATTTGCCTAA 58.682 33.333 0.00 0.00 0.00 2.69
786 2286 7.847096 TGTCATCAGTTCTACTAATTTGCCTA 58.153 34.615 0.00 0.00 0.00 3.93
787 2287 6.711277 TGTCATCAGTTCTACTAATTTGCCT 58.289 36.000 0.00 0.00 0.00 4.75
788 2288 6.985188 TGTCATCAGTTCTACTAATTTGCC 57.015 37.500 0.00 0.00 0.00 4.52
789 2289 8.289618 TGTTTGTCATCAGTTCTACTAATTTGC 58.710 33.333 0.00 0.00 0.00 3.68
796 2296 9.561069 AAAGTAATGTTTGTCATCAGTTCTACT 57.439 29.630 0.00 0.00 35.48 2.57
797 2297 9.599322 CAAAGTAATGTTTGTCATCAGTTCTAC 57.401 33.333 0.00 0.00 35.48 2.59
798 2298 9.554395 TCAAAGTAATGTTTGTCATCAGTTCTA 57.446 29.630 0.00 0.00 38.38 2.10
799 2299 8.450578 TCAAAGTAATGTTTGTCATCAGTTCT 57.549 30.769 0.00 0.00 38.38 3.01
800 2300 9.121517 CATCAAAGTAATGTTTGTCATCAGTTC 57.878 33.333 0.00 0.00 38.38 3.01
801 2301 8.084073 CCATCAAAGTAATGTTTGTCATCAGTT 58.916 33.333 0.00 0.00 38.38 3.16
802 2302 7.309377 CCCATCAAAGTAATGTTTGTCATCAGT 60.309 37.037 0.00 0.00 38.38 3.41
803 2303 7.031372 CCCATCAAAGTAATGTTTGTCATCAG 58.969 38.462 0.00 0.00 38.38 2.90
804 2304 6.071447 CCCCATCAAAGTAATGTTTGTCATCA 60.071 38.462 0.00 0.00 38.38 3.07
805 2305 6.152661 TCCCCATCAAAGTAATGTTTGTCATC 59.847 38.462 0.00 0.00 38.38 2.92
806 2306 6.015918 TCCCCATCAAAGTAATGTTTGTCAT 58.984 36.000 0.00 0.00 38.38 3.06
807 2307 5.389520 TCCCCATCAAAGTAATGTTTGTCA 58.610 37.500 0.00 0.00 38.38 3.58
808 2308 5.975693 TCCCCATCAAAGTAATGTTTGTC 57.024 39.130 0.00 0.00 38.38 3.18
809 2309 6.496565 TCATTCCCCATCAAAGTAATGTTTGT 59.503 34.615 0.00 0.00 38.38 2.83
810 2310 6.934056 TCATTCCCCATCAAAGTAATGTTTG 58.066 36.000 0.00 0.00 38.55 2.93
811 2311 7.552050 TTCATTCCCCATCAAAGTAATGTTT 57.448 32.000 0.00 0.00 0.00 2.83
812 2312 7.738437 ATTCATTCCCCATCAAAGTAATGTT 57.262 32.000 0.00 0.00 0.00 2.71
813 2313 9.438163 AATATTCATTCCCCATCAAAGTAATGT 57.562 29.630 0.00 0.00 0.00 2.71
817 2317 9.793259 GAGTAATATTCATTCCCCATCAAAGTA 57.207 33.333 0.00 0.00 0.00 2.24
818 2318 7.445402 CGAGTAATATTCATTCCCCATCAAAGT 59.555 37.037 0.00 0.00 0.00 2.66
819 2319 7.094634 CCGAGTAATATTCATTCCCCATCAAAG 60.095 40.741 0.00 0.00 0.00 2.77
820 2320 6.714810 CCGAGTAATATTCATTCCCCATCAAA 59.285 38.462 0.00 0.00 0.00 2.69
821 2321 6.237901 CCGAGTAATATTCATTCCCCATCAA 58.762 40.000 0.00 0.00 0.00 2.57
822 2322 5.803145 GCCGAGTAATATTCATTCCCCATCA 60.803 44.000 0.00 0.00 0.00 3.07
823 2323 4.636206 GCCGAGTAATATTCATTCCCCATC 59.364 45.833 0.00 0.00 0.00 3.51
824 2324 4.289672 AGCCGAGTAATATTCATTCCCCAT 59.710 41.667 0.00 0.00 0.00 4.00
825 2325 3.650942 AGCCGAGTAATATTCATTCCCCA 59.349 43.478 0.00 0.00 0.00 4.96
826 2326 4.287766 AGCCGAGTAATATTCATTCCCC 57.712 45.455 0.00 0.00 0.00 4.81
827 2327 5.176592 GGTAGCCGAGTAATATTCATTCCC 58.823 45.833 0.00 0.00 0.00 3.97
872 2372 3.917629 TGGGTGGACTTGTAATTTAGGGA 59.082 43.478 0.00 0.00 0.00 4.20
873 2373 4.310022 TGGGTGGACTTGTAATTTAGGG 57.690 45.455 0.00 0.00 0.00 3.53
874 2374 6.658188 TTTTGGGTGGACTTGTAATTTAGG 57.342 37.500 0.00 0.00 0.00 2.69
879 2379 4.709886 GCCTATTTTGGGTGGACTTGTAAT 59.290 41.667 0.00 0.00 0.00 1.89
886 2386 0.040499 TGGGCCTATTTTGGGTGGAC 59.960 55.000 4.53 0.00 0.00 4.02
888 2388 1.122227 CATGGGCCTATTTTGGGTGG 58.878 55.000 4.53 0.00 0.00 4.61
910 2431 0.035152 CTGCAGCTATGGGGTGTTCA 60.035 55.000 0.00 0.00 44.46 3.18
911 2432 0.749454 CCTGCAGCTATGGGGTGTTC 60.749 60.000 8.66 0.00 44.46 3.18
912 2433 1.304282 CCTGCAGCTATGGGGTGTT 59.696 57.895 8.66 0.00 44.46 3.32
913 2434 3.001514 CCTGCAGCTATGGGGTGT 58.998 61.111 8.66 0.00 44.46 4.16
914 2435 2.517875 GCCTGCAGCTATGGGGTG 60.518 66.667 8.66 0.00 45.31 4.61
915 2436 4.181010 CGCCTGCAGCTATGGGGT 62.181 66.667 8.66 0.00 40.39 4.95
917 2438 4.559063 AGCGCCTGCAGCTATGGG 62.559 66.667 8.66 4.20 44.05 4.00
918 2439 2.971413 GAGCGCCTGCAGCTATGG 60.971 66.667 8.66 0.00 46.13 2.74
919 2440 2.202974 TGAGCGCCTGCAGCTATG 60.203 61.111 8.66 0.00 46.13 2.23
920 2441 2.108566 CTGAGCGCCTGCAGCTAT 59.891 61.111 8.66 0.00 46.13 2.97
921 2442 4.152964 CCTGAGCGCCTGCAGCTA 62.153 66.667 8.66 0.00 46.13 3.32
932 2453 4.638304 TGTGGTACTAAAAGAACCTGAGC 58.362 43.478 0.00 0.00 34.23 4.26
933 2454 5.577164 CGATGTGGTACTAAAAGAACCTGAG 59.423 44.000 0.00 0.00 34.23 3.35
934 2455 5.475719 CGATGTGGTACTAAAAGAACCTGA 58.524 41.667 0.00 0.00 34.23 3.86
935 2456 4.092968 GCGATGTGGTACTAAAAGAACCTG 59.907 45.833 0.00 0.00 34.23 4.00
936 2457 4.251268 GCGATGTGGTACTAAAAGAACCT 58.749 43.478 0.00 0.00 34.23 3.50
937 2458 3.373130 GGCGATGTGGTACTAAAAGAACC 59.627 47.826 0.00 0.00 0.00 3.62
939 2460 3.998341 GTGGCGATGTGGTACTAAAAGAA 59.002 43.478 0.00 0.00 0.00 2.52
940 2461 3.592059 GTGGCGATGTGGTACTAAAAGA 58.408 45.455 0.00 0.00 0.00 2.52
941 2462 2.676342 GGTGGCGATGTGGTACTAAAAG 59.324 50.000 0.00 0.00 0.00 2.27
942 2463 2.038689 TGGTGGCGATGTGGTACTAAAA 59.961 45.455 0.00 0.00 0.00 1.52
958 2491 3.580458 CCACTCTAATCTCCCTATGGTGG 59.420 52.174 0.00 0.00 36.28 4.61
959 2492 4.483950 TCCACTCTAATCTCCCTATGGTG 58.516 47.826 0.00 0.00 0.00 4.17
960 2493 4.834406 TCCACTCTAATCTCCCTATGGT 57.166 45.455 0.00 0.00 0.00 3.55
961 2494 5.398236 TCTTCCACTCTAATCTCCCTATGG 58.602 45.833 0.00 0.00 0.00 2.74
968 2501 3.492482 GCCAGCTCTTCCACTCTAATCTC 60.492 52.174 0.00 0.00 0.00 2.75
978 2511 6.352479 CCATCATAATATAGCCAGCTCTTCCA 60.352 42.308 0.00 0.00 0.00 3.53
979 2512 6.054295 CCATCATAATATAGCCAGCTCTTCC 58.946 44.000 0.00 0.00 0.00 3.46
980 2513 5.526846 GCCATCATAATATAGCCAGCTCTTC 59.473 44.000 0.00 0.00 0.00 2.87
981 2514 5.191323 AGCCATCATAATATAGCCAGCTCTT 59.809 40.000 0.00 0.00 0.00 2.85
1283 7949 7.600231 ACATATATGGTGGAAATTGCAATCA 57.400 32.000 13.38 5.53 0.00 2.57
1326 7992 7.068702 AGCCATTCCTGGATCAACAAATATTA 58.931 34.615 0.00 0.00 46.37 0.98
1329 7995 4.870636 AGCCATTCCTGGATCAACAAATA 58.129 39.130 0.00 0.00 46.37 1.40
1330 7996 3.716431 AGCCATTCCTGGATCAACAAAT 58.284 40.909 0.00 0.00 46.37 2.32
1331 7997 3.173953 AGCCATTCCTGGATCAACAAA 57.826 42.857 0.00 0.00 46.37 2.83
1332 7998 2.905415 AGCCATTCCTGGATCAACAA 57.095 45.000 0.00 0.00 46.37 2.83
1443 8429 4.448210 TGGTTTGAGAAAGTTTCTACGCT 58.552 39.130 18.03 0.00 40.87 5.07
1583 8570 3.192466 GAGCCATTTTGCTTTATGCCTG 58.808 45.455 0.00 0.00 42.95 4.85
1681 8668 3.318839 TCTTGCTGTTGGAACCATGAAAG 59.681 43.478 0.00 0.00 0.00 2.62
1717 8704 7.011773 CGACTGAAATACTGTCAGAACATTTG 58.988 38.462 6.91 2.18 44.44 2.32
1838 8825 4.081030 CGATGCCGATGCCGATGC 62.081 66.667 0.00 0.00 38.22 3.91
1839 8826 3.417224 CCGATGCCGATGCCGATG 61.417 66.667 0.00 0.00 38.22 3.84
1843 8830 3.730761 GATGCCGATGCCGATGCC 61.731 66.667 0.00 0.00 38.22 4.40
1844 8831 4.081030 CGATGCCGATGCCGATGC 62.081 66.667 0.00 0.00 38.22 3.91
1845 8832 4.081030 GCGATGCCGATGCCGATG 62.081 66.667 0.00 0.00 38.22 3.84
1873 8860 0.682209 AATTGCTGGCCAAGATCGCT 60.682 50.000 7.01 0.00 36.76 4.93
2025 9012 5.936187 TTCATGTATCCAGTTTACCCGTA 57.064 39.130 0.00 0.00 0.00 4.02
2112 9099 4.486125 TGGTCTTAGCATATGTCTGCAA 57.514 40.909 4.29 0.00 44.77 4.08
2113 9100 4.694760 ATGGTCTTAGCATATGTCTGCA 57.305 40.909 4.29 0.00 44.77 4.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.