Multiple sequence alignment - TraesCS7B01G290900

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G290900 chr7B 100.000 5923 0 0 1 5923 527044013 527038091 0.000000e+00 10938.0
1 TraesCS7B01G290900 chr7B 97.311 595 13 3 1 594 470296605 470296013 0.000000e+00 1007.0
2 TraesCS7B01G290900 chr7D 92.006 3190 155 45 593 3716 498718896 498715741 0.000000e+00 4386.0
3 TraesCS7B01G290900 chr7D 92.014 1390 69 18 4551 5922 498714926 498713561 0.000000e+00 1914.0
4 TraesCS7B01G290900 chr7D 92.920 565 26 2 3867 4430 498715750 498715199 0.000000e+00 809.0
5 TraesCS7B01G290900 chr7D 90.196 153 14 1 3716 3867 617790592 617790744 1.300000e-46 198.0
6 TraesCS7B01G290900 chr7A 90.859 2341 129 28 1095 3397 564620135 564617842 0.000000e+00 3059.0
7 TraesCS7B01G290900 chr7A 90.535 1384 56 28 4551 5923 564611176 564609857 0.000000e+00 1760.0
8 TraesCS7B01G290900 chr7A 92.459 305 19 3 3871 4171 564612475 564612171 3.280000e-117 433.0
9 TraesCS7B01G290900 chr7A 94.096 271 12 2 4162 4430 564611754 564611486 5.530000e-110 409.0
10 TraesCS7B01G290900 chr7A 90.415 313 13 9 733 1029 564620747 564620436 4.300000e-106 396.0
11 TraesCS7B01G290900 chr7A 95.862 145 5 1 593 737 564622592 564622449 3.570000e-57 233.0
12 TraesCS7B01G290900 chr7A 88.889 153 16 1 3716 3867 428822325 428822173 2.820000e-43 187.0
13 TraesCS7B01G290900 chr7A 96.491 57 2 0 5112 5168 732467565 732467621 1.760000e-15 95.3
14 TraesCS7B01G290900 chr3B 96.860 605 15 2 1 601 171120317 171120921 0.000000e+00 1009.0
15 TraesCS7B01G290900 chr3B 90.625 64 3 3 5108 5170 181288807 181288868 1.370000e-11 82.4
16 TraesCS7B01G290900 chr2B 97.148 596 16 1 1 596 316103493 316104087 0.000000e+00 1005.0
17 TraesCS7B01G290900 chr2B 90.196 153 12 3 3716 3867 118068492 118068342 4.680000e-46 196.0
18 TraesCS7B01G290900 chr6B 96.985 597 16 2 2 597 179995614 179996209 0.000000e+00 1002.0
19 TraesCS7B01G290900 chr6B 96.985 597 16 2 1 596 646915790 646915195 0.000000e+00 1002.0
20 TraesCS7B01G290900 chr6B 94.643 56 3 0 5113 5168 59825770 59825825 2.940000e-13 87.9
21 TraesCS7B01G290900 chr1B 96.980 596 16 2 1 596 461237624 461238217 0.000000e+00 1000.0
22 TraesCS7B01G290900 chr4B 96.823 598 18 1 1 597 535084081 535083484 0.000000e+00 998.0
23 TraesCS7B01G290900 chr4B 96.828 599 16 3 1 596 665293581 665292983 0.000000e+00 998.0
24 TraesCS7B01G290900 chr4B 94.915 59 3 0 5112 5170 465733244 465733302 6.320000e-15 93.5
25 TraesCS7B01G290900 chr3A 96.211 607 19 3 1 605 378337574 378336970 0.000000e+00 990.0
26 TraesCS7B01G290900 chr2D 90.968 155 13 1 3716 3869 215831967 215831813 2.160000e-49 207.0
27 TraesCS7B01G290900 chr3D 89.571 163 15 2 3707 3867 26165685 26165847 7.780000e-49 206.0
28 TraesCS7B01G290900 chr3D 90.625 64 3 3 5108 5170 126949042 126949103 1.370000e-11 82.4
29 TraesCS7B01G290900 chr5B 89.873 158 14 2 3712 3867 601414330 601414173 1.010000e-47 202.0
30 TraesCS7B01G290900 chr6D 88.889 162 16 2 3716 3876 450832117 450831957 1.300000e-46 198.0
31 TraesCS7B01G290900 chr1D 89.308 159 15 2 3715 3871 418199585 418199427 1.300000e-46 198.0
32 TraesCS7B01G290900 chr1D 88.571 70 6 1 5099 5168 410795893 410795960 3.800000e-12 84.2
33 TraesCS7B01G290900 chr1A 88.535 157 17 1 3716 3871 99618515 99618359 7.840000e-44 189.0
34 TraesCS7B01G290900 chr5D 94.737 57 3 0 5111 5167 9120316 9120372 8.180000e-14 89.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G290900 chr7B 527038091 527044013 5922 True 10938.000000 10938 100.000000 1 5923 1 chr7B.!!$R2 5922
1 TraesCS7B01G290900 chr7B 470296013 470296605 592 True 1007.000000 1007 97.311000 1 594 1 chr7B.!!$R1 593
2 TraesCS7B01G290900 chr7D 498713561 498718896 5335 True 2369.666667 4386 92.313333 593 5922 3 chr7D.!!$R1 5329
3 TraesCS7B01G290900 chr7A 564617842 564622592 4750 True 1229.333333 3059 92.378667 593 3397 3 chr7A.!!$R3 2804
4 TraesCS7B01G290900 chr7A 564609857 564612475 2618 True 867.333333 1760 92.363333 3871 5923 3 chr7A.!!$R2 2052
5 TraesCS7B01G290900 chr3B 171120317 171120921 604 False 1009.000000 1009 96.860000 1 601 1 chr3B.!!$F1 600
6 TraesCS7B01G290900 chr2B 316103493 316104087 594 False 1005.000000 1005 97.148000 1 596 1 chr2B.!!$F1 595
7 TraesCS7B01G290900 chr6B 179995614 179996209 595 False 1002.000000 1002 96.985000 2 597 1 chr6B.!!$F2 595
8 TraesCS7B01G290900 chr6B 646915195 646915790 595 True 1002.000000 1002 96.985000 1 596 1 chr6B.!!$R1 595
9 TraesCS7B01G290900 chr1B 461237624 461238217 593 False 1000.000000 1000 96.980000 1 596 1 chr1B.!!$F1 595
10 TraesCS7B01G290900 chr4B 535083484 535084081 597 True 998.000000 998 96.823000 1 597 1 chr4B.!!$R1 596
11 TraesCS7B01G290900 chr4B 665292983 665293581 598 True 998.000000 998 96.828000 1 596 1 chr4B.!!$R2 595
12 TraesCS7B01G290900 chr3A 378336970 378337574 604 True 990.000000 990 96.211000 1 605 1 chr3A.!!$R1 604

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 2665 1.133823 CCATCAATCCATCCACCCGAA 60.134 52.381 0.0 0.0 0.00 4.30 F
1060 2792 0.030603 ATCCAGTCCTTCCTCCCTCC 60.031 60.000 0.0 0.0 0.00 4.30 F
2227 4227 0.928505 ATGGGCATGAAGGTGATGGA 59.071 50.000 0.0 0.0 0.00 3.41 F
3616 5671 0.117140 ATCCCAGTCTCCTGTCCACA 59.883 55.000 0.0 0.0 36.95 4.17 F
3788 5844 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.0 0.0 0.00 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2541 4555 1.959042 AGCCAGCAATTCCTGTATCG 58.041 50.000 0.00 0.0 0.00 2.92 R
2704 4724 2.338809 ACAGGTGTGGAGGAATCAAGA 58.661 47.619 0.00 0.0 0.00 3.02 R
3769 5825 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.0 0.00 6.53 R
4842 7544 0.036388 AGACACACTGTTATGCCCCG 60.036 55.000 0.00 0.0 0.00 5.73 R
5576 8309 0.949105 AACAGTTTCAGCGCCTACCG 60.949 55.000 2.29 0.0 40.75 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
400 409 4.652822 ACATGGGGTCTAGTTTTGAAGAC 58.347 43.478 0.00 0.00 0.00 3.01
543 552 3.424703 CAAAATGAGTGGTGATGGAGGT 58.575 45.455 0.00 0.00 0.00 3.85
611 620 6.920569 TCTGAAAAGGAAACAAGTAGACAC 57.079 37.500 0.00 0.00 0.00 3.67
934 2665 1.133823 CCATCAATCCATCCACCCGAA 60.134 52.381 0.00 0.00 0.00 4.30
940 2671 1.198094 TCCATCCACCCGAAGCAAGA 61.198 55.000 0.00 0.00 0.00 3.02
1048 2780 0.752054 CCTCTCTGCTCCATCCAGTC 59.248 60.000 0.00 0.00 0.00 3.51
1050 2782 0.337773 TCTCTGCTCCATCCAGTCCT 59.662 55.000 0.00 0.00 0.00 3.85
1051 2783 1.202330 CTCTGCTCCATCCAGTCCTT 58.798 55.000 0.00 0.00 0.00 3.36
1058 2790 0.327000 CCATCCAGTCCTTCCTCCCT 60.327 60.000 0.00 0.00 0.00 4.20
1060 2792 0.030603 ATCCAGTCCTTCCTCCCTCC 60.031 60.000 0.00 0.00 0.00 4.30
1064 2796 4.089757 TCCTTCCTCCCTCCCCCG 62.090 72.222 0.00 0.00 0.00 5.73
1272 3251 3.640407 GGCCACTCAGGTGAGGCA 61.640 66.667 11.63 0.00 46.13 4.75
1333 3313 6.485313 TCGTAGATTGTGTTGTTTCTTCCATT 59.515 34.615 0.00 0.00 0.00 3.16
1410 3390 9.578439 CTATTAGATTTCTGATGATGCATCGTA 57.422 33.333 21.25 5.22 43.14 3.43
1444 3428 4.561500 TGGATGTCGGAGTTGGAATTTA 57.438 40.909 0.00 0.00 0.00 1.40
1445 3429 4.513442 TGGATGTCGGAGTTGGAATTTAG 58.487 43.478 0.00 0.00 0.00 1.85
1446 3430 4.224147 TGGATGTCGGAGTTGGAATTTAGA 59.776 41.667 0.00 0.00 0.00 2.10
1447 3431 5.183228 GGATGTCGGAGTTGGAATTTAGAA 58.817 41.667 0.00 0.00 0.00 2.10
1448 3432 5.646360 GGATGTCGGAGTTGGAATTTAGAAA 59.354 40.000 0.00 0.00 0.00 2.52
1449 3433 6.318900 GGATGTCGGAGTTGGAATTTAGAAAT 59.681 38.462 0.00 0.00 0.00 2.17
1450 3434 6.737254 TGTCGGAGTTGGAATTTAGAAATC 57.263 37.500 0.00 0.00 0.00 2.17
1451 3435 5.350365 TGTCGGAGTTGGAATTTAGAAATCG 59.650 40.000 0.00 0.00 0.00 3.34
1452 3436 4.331717 TCGGAGTTGGAATTTAGAAATCGC 59.668 41.667 0.00 0.00 0.00 4.58
1453 3437 4.094294 CGGAGTTGGAATTTAGAAATCGCA 59.906 41.667 0.00 0.00 0.00 5.10
1454 3438 5.573146 GGAGTTGGAATTTAGAAATCGCAG 58.427 41.667 0.00 0.00 0.00 5.18
1455 3439 5.354234 GGAGTTGGAATTTAGAAATCGCAGA 59.646 40.000 0.00 0.00 45.75 4.26
1456 3440 6.038714 GGAGTTGGAATTTAGAAATCGCAGAT 59.961 38.462 0.00 0.00 45.12 2.90
1457 3441 7.396540 AGTTGGAATTTAGAAATCGCAGATT 57.603 32.000 0.00 0.00 45.12 2.40
1458 3442 7.253422 AGTTGGAATTTAGAAATCGCAGATTG 58.747 34.615 4.87 0.00 45.12 2.67
1459 3443 6.757897 TGGAATTTAGAAATCGCAGATTGT 57.242 33.333 4.87 0.21 45.12 2.71
1460 3444 7.156876 TGGAATTTAGAAATCGCAGATTGTT 57.843 32.000 4.87 0.85 45.12 2.83
1518 3502 6.401394 CATCCTGTCTGTCTTGAAAGTGATA 58.599 40.000 0.00 0.00 0.00 2.15
1584 3568 5.106277 GCAAAGTTATTTCCCGCTAGAGTTT 60.106 40.000 0.00 0.00 0.00 2.66
1606 3590 9.736023 AGTTTCTTGTTCAGACATTTGTAATTC 57.264 29.630 0.00 0.00 35.29 2.17
1737 3721 3.461061 TGCTGCTATATGCTGTTGTCTC 58.539 45.455 0.00 0.00 43.37 3.36
1848 3835 5.181811 GTGCTGCCATATATTCTGTGCAATA 59.818 40.000 0.00 0.00 0.00 1.90
1901 3888 7.148120 GCATCTTTGAACTGCTATATGCCATAT 60.148 37.037 2.25 2.25 42.00 1.78
1902 3889 7.677454 TCTTTGAACTGCTATATGCCATATG 57.323 36.000 7.47 0.00 42.00 1.78
1903 3890 5.885230 TTGAACTGCTATATGCCATATGC 57.115 39.130 7.47 9.21 42.00 3.14
1904 3891 4.264253 TGAACTGCTATATGCCATATGCC 58.736 43.478 7.47 0.00 42.00 4.40
1905 3892 3.287867 ACTGCTATATGCCATATGCCC 57.712 47.619 7.47 0.00 42.00 5.36
1906 3893 2.577563 ACTGCTATATGCCATATGCCCA 59.422 45.455 7.47 0.00 42.00 5.36
1907 3894 3.203710 ACTGCTATATGCCATATGCCCAT 59.796 43.478 7.47 10.65 42.00 4.00
1908 3895 4.413189 ACTGCTATATGCCATATGCCCATA 59.587 41.667 7.47 13.40 42.00 2.74
1909 3896 5.074102 ACTGCTATATGCCATATGCCCATAT 59.926 40.000 21.06 21.06 42.00 1.78
1939 3938 8.560355 TGAATAGGAATCTTTGAACGAATGAA 57.440 30.769 0.00 0.00 0.00 2.57
1950 3949 7.495934 TCTTTGAACGAATGAATAGGAATCTCC 59.504 37.037 0.00 0.00 36.58 3.71
1959 3958 5.152193 TGAATAGGAATCTCCGGAATACCA 58.848 41.667 5.23 0.00 42.75 3.25
1960 3959 5.011738 TGAATAGGAATCTCCGGAATACCAC 59.988 44.000 5.23 0.00 42.75 4.16
1990 3990 6.668323 ACTCCAGTATGACGAAAACATTTTG 58.332 36.000 0.00 0.00 39.69 2.44
1998 3998 4.202101 TGACGAAAACATTTTGGATGTGCT 60.202 37.500 6.16 0.00 31.80 4.40
2065 4065 1.811965 TCAATTCCGACCATTGTGCAG 59.188 47.619 0.00 0.00 33.91 4.41
2071 4071 1.364626 CGACCATTGTGCAGGAGAGC 61.365 60.000 0.00 0.00 0.00 4.09
2082 4082 2.819608 TGCAGGAGAGCAAACCATAAAC 59.180 45.455 0.00 0.00 42.46 2.01
2227 4227 0.928505 ATGGGCATGAAGGTGATGGA 59.071 50.000 0.00 0.00 0.00 3.41
2299 4299 4.365514 TGGTGCAAAGATTCCTACTCAA 57.634 40.909 0.00 0.00 0.00 3.02
2328 4328 2.481952 CTCTTGTTAGAGGCACTGCAAC 59.518 50.000 2.82 0.00 43.52 4.17
2395 4395 4.273148 TCAGGTGCCTTTTACTCTTCTC 57.727 45.455 0.00 0.00 0.00 2.87
2473 4487 6.094464 TCCATGCAGTTCATCAATCTTTAGTG 59.906 38.462 0.00 0.00 31.79 2.74
2474 4488 6.127814 CCATGCAGTTCATCAATCTTTAGTGT 60.128 38.462 0.00 0.00 31.79 3.55
2475 4489 7.066163 CCATGCAGTTCATCAATCTTTAGTGTA 59.934 37.037 0.00 0.00 31.79 2.90
2476 4490 7.977789 TGCAGTTCATCAATCTTTAGTGTAA 57.022 32.000 0.00 0.00 0.00 2.41
2477 4491 8.565896 TGCAGTTCATCAATCTTTAGTGTAAT 57.434 30.769 0.00 0.00 0.00 1.89
2541 4555 6.657541 TGGGTTAATCTCACTTTATTGGTGAC 59.342 38.462 0.00 0.00 38.57 3.67
2542 4556 6.183360 GGGTTAATCTCACTTTATTGGTGACG 60.183 42.308 0.00 0.00 38.57 4.35
2605 4619 3.639672 ATAGGTTTCTTTGGTACCCGG 57.360 47.619 10.07 0.00 32.20 5.73
2704 4724 9.850628 GCTATATGTTATCATTGTTCATTGCAT 57.149 29.630 0.00 0.00 35.70 3.96
2723 4743 3.276857 CATCTTGATTCCTCCACACCTG 58.723 50.000 0.00 0.00 0.00 4.00
2726 4746 3.907474 TCTTGATTCCTCCACACCTGTAA 59.093 43.478 0.00 0.00 0.00 2.41
2738 4758 8.405531 CCTCCACACCTGTAATTAATGTTTATG 58.594 37.037 0.00 0.00 0.00 1.90
2998 5028 6.868339 CCCTAAATACACCAGCTTTCTTTTTG 59.132 38.462 0.00 0.00 0.00 2.44
3034 5064 9.585099 TTCTATTCATGCCAATTTGTAATTGTC 57.415 29.630 10.29 0.00 0.00 3.18
3066 5096 2.353323 TGCTCATCACAATCTCAGTGC 58.647 47.619 0.00 0.00 36.93 4.40
3072 5102 1.276138 TCACAATCTCAGTGCGTCCAT 59.724 47.619 0.00 0.00 36.93 3.41
3081 5111 4.081365 TCTCAGTGCGTCCATAACCAAATA 60.081 41.667 0.00 0.00 0.00 1.40
3110 5140 8.507249 GGAAAGGTTCATTATATGAGAATTCCG 58.493 37.037 0.65 0.00 40.94 4.30
3158 5188 1.177401 GCTGAACCCCTCAATCAACC 58.823 55.000 0.00 0.00 32.17 3.77
3171 5201 5.242393 CCTCAATCAACCTGTGAATGAACTT 59.758 40.000 0.00 0.00 43.93 2.66
3185 5215 5.710099 TGAATGAACTTTGTCTATTGGACCC 59.290 40.000 0.00 0.00 43.89 4.46
3208 5238 5.106157 CCAAGTCATGGTCAAAGGTGATAAC 60.106 44.000 0.00 0.00 44.85 1.89
3240 5270 4.782019 TTGAATGGCTTGTATTGTGACC 57.218 40.909 0.00 0.00 0.00 4.02
3260 5290 1.532868 CTGTGAAGTTTCAGGCTTCCG 59.467 52.381 0.00 0.00 41.03 4.30
3319 5349 6.327154 TGAACAATCTTAGAAATGCATGCAG 58.673 36.000 26.69 10.51 0.00 4.41
3399 5429 1.984570 GGGGAAAAAGCCTGCCCTC 60.985 63.158 0.00 0.00 41.17 4.30
3400 5430 1.228862 GGGAAAAAGCCTGCCCTCA 60.229 57.895 0.00 0.00 37.59 3.86
3401 5431 0.615827 GGGAAAAAGCCTGCCCTCAT 60.616 55.000 0.00 0.00 37.59 2.90
3404 5434 1.475682 GAAAAAGCCTGCCCTCATCTG 59.524 52.381 0.00 0.00 0.00 2.90
3407 5437 4.891037 GCCTGCCCTCATCTGCCC 62.891 72.222 0.00 0.00 0.00 5.36
3408 5438 3.095163 CCTGCCCTCATCTGCCCT 61.095 66.667 0.00 0.00 0.00 5.19
3409 5439 2.192443 CTGCCCTCATCTGCCCTG 59.808 66.667 0.00 0.00 0.00 4.45
3425 5479 3.011517 TGCCCCTCTCCAAGCTCC 61.012 66.667 0.00 0.00 0.00 4.70
3452 5506 0.449388 GGCTCTGCACTCATTTTCGG 59.551 55.000 0.00 0.00 0.00 4.30
3463 5517 2.939103 CTCATTTTCGGTTAGCCTCAGG 59.061 50.000 0.00 0.00 0.00 3.86
3483 5537 4.484537 GGTAACTAGAGGGAAAAGGACC 57.515 50.000 0.00 0.00 0.00 4.46
3484 5538 3.118847 GGTAACTAGAGGGAAAAGGACCG 60.119 52.174 0.00 0.00 0.00 4.79
3485 5539 2.617840 ACTAGAGGGAAAAGGACCGA 57.382 50.000 0.00 0.00 0.00 4.69
3501 5555 3.868077 GGACCGAGAATGATCTTCAACAG 59.132 47.826 0.00 0.00 35.54 3.16
3503 5557 3.055530 ACCGAGAATGATCTTCAACAGCT 60.056 43.478 0.00 0.00 35.54 4.24
3504 5558 3.937706 CCGAGAATGATCTTCAACAGCTT 59.062 43.478 0.00 0.00 35.54 3.74
3505 5559 4.394300 CCGAGAATGATCTTCAACAGCTTT 59.606 41.667 0.00 0.00 35.54 3.51
3553 5608 3.396685 AGACTCCTGGATCTGCTACTT 57.603 47.619 0.00 0.00 0.00 2.24
3603 5658 3.370527 CCAGTGTGGTTAAGGTATCCCAG 60.371 52.174 0.00 0.00 31.35 4.45
3616 5671 0.117140 ATCCCAGTCTCCTGTCCACA 59.883 55.000 0.00 0.00 36.95 4.17
3630 5686 1.192146 TCCACAGTGGTAGAGGGTGC 61.192 60.000 19.65 0.00 39.03 5.01
3634 5690 0.620556 CAGTGGTAGAGGGTGCCATT 59.379 55.000 0.00 0.00 43.76 3.16
3706 5762 1.129917 AGACATCTGAGCCATGGAGG 58.870 55.000 18.40 0.00 41.84 4.30
3715 5771 2.203070 CCATGGAGGCACCGCTAC 60.203 66.667 5.56 0.00 42.61 3.58
3716 5772 2.584064 CATGGAGGCACCGCTACA 59.416 61.111 0.00 0.00 42.61 2.74
3717 5773 1.146930 CATGGAGGCACCGCTACAT 59.853 57.895 0.00 0.00 42.61 2.29
3718 5774 0.464373 CATGGAGGCACCGCTACATT 60.464 55.000 0.00 0.00 42.61 2.71
3719 5775 0.464373 ATGGAGGCACCGCTACATTG 60.464 55.000 0.00 0.00 42.61 2.82
3720 5776 1.078426 GGAGGCACCGCTACATTGT 60.078 57.895 0.00 0.00 0.00 2.71
3721 5777 0.676782 GGAGGCACCGCTACATTGTT 60.677 55.000 0.00 0.00 0.00 2.83
3722 5778 1.165270 GAGGCACCGCTACATTGTTT 58.835 50.000 0.00 0.00 0.00 2.83
3723 5779 1.539827 GAGGCACCGCTACATTGTTTT 59.460 47.619 0.00 0.00 0.00 2.43
3724 5780 1.960689 AGGCACCGCTACATTGTTTTT 59.039 42.857 0.00 0.00 0.00 1.94
3725 5781 3.150767 AGGCACCGCTACATTGTTTTTA 58.849 40.909 0.00 0.00 0.00 1.52
3726 5782 3.570550 AGGCACCGCTACATTGTTTTTAA 59.429 39.130 0.00 0.00 0.00 1.52
3727 5783 3.917985 GGCACCGCTACATTGTTTTTAAG 59.082 43.478 0.00 0.00 0.00 1.85
3728 5784 3.917985 GCACCGCTACATTGTTTTTAAGG 59.082 43.478 0.00 0.00 0.00 2.69
3729 5785 3.917985 CACCGCTACATTGTTTTTAAGGC 59.082 43.478 0.00 0.00 0.00 4.35
3730 5786 3.168193 CCGCTACATTGTTTTTAAGGCG 58.832 45.455 0.00 0.00 39.80 5.52
3731 5787 3.365565 CCGCTACATTGTTTTTAAGGCGT 60.366 43.478 0.00 0.00 38.70 5.68
3732 5788 3.844099 CGCTACATTGTTTTTAAGGCGTC 59.156 43.478 0.00 0.00 36.21 5.19
3733 5789 4.163552 GCTACATTGTTTTTAAGGCGTCC 58.836 43.478 0.00 0.00 0.00 4.79
3734 5790 4.082949 GCTACATTGTTTTTAAGGCGTCCT 60.083 41.667 0.00 0.00 33.87 3.85
3735 5791 4.237349 ACATTGTTTTTAAGGCGTCCTG 57.763 40.909 0.00 0.00 32.13 3.86
3736 5792 2.785713 TTGTTTTTAAGGCGTCCTGC 57.214 45.000 0.00 0.00 45.38 4.85
3749 5805 2.211353 GTCCTGCCTTAGACGCTTAG 57.789 55.000 0.00 0.00 0.00 2.18
3750 5806 1.112113 TCCTGCCTTAGACGCTTAGG 58.888 55.000 7.32 7.32 33.87 2.69
3784 5840 2.405892 GGCAGCGCCTTACAAATATG 57.594 50.000 2.29 0.00 46.69 1.78
3785 5841 1.600413 GGCAGCGCCTTACAAATATGC 60.600 52.381 2.29 2.54 46.69 3.14
3786 5842 1.600413 GCAGCGCCTTACAAATATGCC 60.600 52.381 2.29 0.00 0.00 4.40
3787 5843 1.001378 CAGCGCCTTACAAATATGCCC 60.001 52.381 2.29 0.00 0.00 5.36
3788 5844 0.040425 GCGCCTTACAAATATGCCCG 60.040 55.000 0.00 0.00 0.00 6.13
3789 5845 0.040425 CGCCTTACAAATATGCCCGC 60.040 55.000 0.00 0.00 0.00 6.13
3790 5846 0.313987 GCCTTACAAATATGCCCGCC 59.686 55.000 0.00 0.00 0.00 6.13
3791 5847 1.981256 CCTTACAAATATGCCCGCCT 58.019 50.000 0.00 0.00 0.00 5.52
3792 5848 2.306847 CCTTACAAATATGCCCGCCTT 58.693 47.619 0.00 0.00 0.00 4.35
3793 5849 3.482436 CCTTACAAATATGCCCGCCTTA 58.518 45.455 0.00 0.00 0.00 2.69
3794 5850 3.502211 CCTTACAAATATGCCCGCCTTAG 59.498 47.826 0.00 0.00 0.00 2.18
3795 5851 1.981256 ACAAATATGCCCGCCTTAGG 58.019 50.000 0.00 0.00 0.00 2.69
3796 5852 1.214424 ACAAATATGCCCGCCTTAGGT 59.786 47.619 0.00 0.00 0.00 3.08
3797 5853 1.608590 CAAATATGCCCGCCTTAGGTG 59.391 52.381 4.57 4.57 0.00 4.00
3798 5854 0.537371 AATATGCCCGCCTTAGGTGC 60.537 55.000 6.25 4.53 0.00 5.01
3799 5855 1.418908 ATATGCCCGCCTTAGGTGCT 61.419 55.000 6.25 0.00 0.00 4.40
3800 5856 1.632018 TATGCCCGCCTTAGGTGCTT 61.632 55.000 6.25 4.99 0.00 3.91
3801 5857 1.632018 ATGCCCGCCTTAGGTGCTTA 61.632 55.000 6.25 0.00 0.00 3.09
3802 5858 1.523938 GCCCGCCTTAGGTGCTTAG 60.524 63.158 6.25 0.00 0.00 2.18
3803 5859 1.146263 CCCGCCTTAGGTGCTTAGG 59.854 63.158 6.25 0.00 33.87 2.69
3805 5861 4.126524 GCCTTAGGTGCTTAGGCG 57.873 61.111 0.00 0.00 44.44 5.52
3806 5862 1.221021 GCCTTAGGTGCTTAGGCGT 59.779 57.895 0.00 0.00 44.44 5.68
3807 5863 0.810426 GCCTTAGGTGCTTAGGCGTC 60.810 60.000 0.00 0.00 44.44 5.19
3808 5864 0.535335 CCTTAGGTGCTTAGGCGTCA 59.465 55.000 0.00 0.00 42.25 4.35
3809 5865 1.641577 CTTAGGTGCTTAGGCGTCAC 58.358 55.000 0.00 0.00 42.25 3.67
3819 5875 3.142838 GGCGTCACCTACCCGCTA 61.143 66.667 0.00 0.00 46.23 4.26
3820 5876 2.412112 GCGTCACCTACCCGCTAG 59.588 66.667 0.00 0.00 43.81 3.42
3821 5877 2.117156 GCGTCACCTACCCGCTAGA 61.117 63.158 0.00 0.00 43.81 2.43
3822 5878 2.023318 CGTCACCTACCCGCTAGAG 58.977 63.158 0.00 0.00 0.00 2.43
3823 5879 1.734748 GTCACCTACCCGCTAGAGC 59.265 63.158 0.00 0.00 37.78 4.09
3824 5880 1.035932 GTCACCTACCCGCTAGAGCA 61.036 60.000 1.89 0.00 42.21 4.26
3825 5881 0.752009 TCACCTACCCGCTAGAGCAG 60.752 60.000 1.89 0.00 42.21 4.24
3826 5882 1.455959 ACCTACCCGCTAGAGCAGG 60.456 63.158 2.07 2.07 44.05 4.85
3844 5900 3.448686 CAGGTATGCTTGTCTTAGGTCG 58.551 50.000 0.00 0.00 0.00 4.79
3845 5901 2.159085 AGGTATGCTTGTCTTAGGTCGC 60.159 50.000 0.00 0.00 0.00 5.19
3846 5902 2.159085 GGTATGCTTGTCTTAGGTCGCT 60.159 50.000 0.00 0.00 0.00 4.93
3847 5903 2.770164 ATGCTTGTCTTAGGTCGCTT 57.230 45.000 0.00 0.00 0.00 4.68
3848 5904 2.543777 TGCTTGTCTTAGGTCGCTTT 57.456 45.000 0.00 0.00 0.00 3.51
3849 5905 3.671008 TGCTTGTCTTAGGTCGCTTTA 57.329 42.857 0.00 0.00 0.00 1.85
3850 5906 3.323243 TGCTTGTCTTAGGTCGCTTTAC 58.677 45.455 0.00 0.00 0.00 2.01
3851 5907 2.671888 GCTTGTCTTAGGTCGCTTTACC 59.328 50.000 0.00 0.00 40.06 2.85
3852 5908 3.863400 GCTTGTCTTAGGTCGCTTTACCA 60.863 47.826 0.00 0.00 42.40 3.25
3853 5909 3.308438 TGTCTTAGGTCGCTTTACCAC 57.692 47.619 0.00 0.00 42.40 4.16
3854 5910 2.028748 TGTCTTAGGTCGCTTTACCACC 60.029 50.000 0.00 0.00 42.40 4.61
3855 5911 2.233186 GTCTTAGGTCGCTTTACCACCT 59.767 50.000 0.00 0.00 42.40 4.00
3856 5912 2.901839 TCTTAGGTCGCTTTACCACCTT 59.098 45.455 0.00 0.00 42.40 3.50
3857 5913 4.082026 GTCTTAGGTCGCTTTACCACCTTA 60.082 45.833 0.00 0.00 42.40 2.69
3858 5914 4.713321 TCTTAGGTCGCTTTACCACCTTAT 59.287 41.667 0.00 0.00 42.40 1.73
3859 5915 5.893255 TCTTAGGTCGCTTTACCACCTTATA 59.107 40.000 0.00 0.00 42.40 0.98
3860 5916 6.380846 TCTTAGGTCGCTTTACCACCTTATAA 59.619 38.462 0.00 0.00 42.40 0.98
3861 5917 5.425196 AGGTCGCTTTACCACCTTATAAA 57.575 39.130 0.00 0.00 42.40 1.40
3862 5918 5.181009 AGGTCGCTTTACCACCTTATAAAC 58.819 41.667 0.00 0.00 42.40 2.01
3863 5919 4.937015 GGTCGCTTTACCACCTTATAAACA 59.063 41.667 0.00 0.00 39.50 2.83
3864 5920 5.412286 GGTCGCTTTACCACCTTATAAACAA 59.588 40.000 0.00 0.00 39.50 2.83
3865 5921 6.094464 GGTCGCTTTACCACCTTATAAACAAT 59.906 38.462 0.00 0.00 39.50 2.71
3933 5990 9.698309 ACCAGTGAGATGATATATTTTACTTCG 57.302 33.333 0.00 0.00 0.00 3.79
3960 6017 2.093973 CCCAAGTACCAGTCTGTAGCAG 60.094 54.545 0.00 0.00 0.00 4.24
3975 6032 3.585289 TGTAGCAGTTCCATTTCAGGGTA 59.415 43.478 0.00 0.00 0.00 3.69
4001 6058 3.068024 TGGTGTCCTGTGCTGAAAATTTC 59.932 43.478 0.00 0.00 0.00 2.17
4049 6108 7.013823 TCTCAATCTTCTGAGACCATCTTTT 57.986 36.000 0.00 0.00 45.45 2.27
4204 6692 7.615582 TTCTTGGCAACTTACTAGATCAATG 57.384 36.000 0.00 0.00 37.61 2.82
4220 6708 7.312657 AGATCAATGCTGTAACATGTGTTAG 57.687 36.000 0.00 0.00 40.74 2.34
4224 6712 6.710295 TCAATGCTGTAACATGTGTTAGTTCT 59.290 34.615 0.00 0.00 40.74 3.01
4246 6734 0.236711 CAAAGTGCCTCGCAGAAGTG 59.763 55.000 0.00 0.00 40.08 3.16
4296 6784 3.405831 CTGATGCTCTGTTTTCAGGTGA 58.594 45.455 0.00 0.00 46.94 4.02
4334 6822 9.515020 TGTTTCAGTGACATTCTGTTAATTTTC 57.485 29.630 0.00 0.00 34.86 2.29
4436 7024 7.867403 TGTTCAAATTGCTTTCAGTTCCTATTC 59.133 33.333 0.00 0.00 0.00 1.75
4457 7107 5.767816 TCTTTAGCTTTGGGTTCACTTTC 57.232 39.130 0.00 0.00 0.00 2.62
4466 7116 3.426615 TGGGTTCACTTTCTGTTGTTGT 58.573 40.909 0.00 0.00 0.00 3.32
4467 7117 3.829601 TGGGTTCACTTTCTGTTGTTGTT 59.170 39.130 0.00 0.00 0.00 2.83
4468 7118 4.173256 GGGTTCACTTTCTGTTGTTGTTG 58.827 43.478 0.00 0.00 0.00 3.33
4469 7119 3.612423 GGTTCACTTTCTGTTGTTGTTGC 59.388 43.478 0.00 0.00 0.00 4.17
4472 7122 6.265577 GTTCACTTTCTGTTGTTGTTGCTAT 58.734 36.000 0.00 0.00 0.00 2.97
4475 7125 5.682862 CACTTTCTGTTGTTGTTGCTATGTC 59.317 40.000 0.00 0.00 0.00 3.06
4491 7154 6.643388 TGCTATGTCAGTAGTTTCATCACAT 58.357 36.000 0.00 0.00 0.00 3.21
4493 7156 7.607607 TGCTATGTCAGTAGTTTCATCACATTT 59.392 33.333 0.00 0.00 0.00 2.32
4520 7183 8.635765 ATTTGTCACACTTGATATTACCACTT 57.364 30.769 0.00 0.00 33.11 3.16
4523 7186 7.870826 TGTCACACTTGATATTACCACTTTTG 58.129 34.615 0.00 0.00 33.11 2.44
4526 7189 8.729756 TCACACTTGATATTACCACTTTTGATG 58.270 33.333 0.00 0.00 0.00 3.07
4768 7470 1.545651 CGCTTCTCCCCTTTTTGTCCT 60.546 52.381 0.00 0.00 0.00 3.85
4773 7475 3.332968 TCTCCCCTTTTTGTCCTTAGGT 58.667 45.455 0.00 0.00 0.00 3.08
4781 7483 4.360951 TTTTGTCCTTAGGTCGGTGAAT 57.639 40.909 0.00 0.00 0.00 2.57
4790 7492 0.468226 GGTCGGTGAATGGGATGCTA 59.532 55.000 0.00 0.00 0.00 3.49
4791 7493 1.072331 GGTCGGTGAATGGGATGCTAT 59.928 52.381 0.00 0.00 0.00 2.97
4792 7494 2.487265 GGTCGGTGAATGGGATGCTATT 60.487 50.000 0.00 0.00 0.00 1.73
4793 7495 2.808543 GTCGGTGAATGGGATGCTATTC 59.191 50.000 15.11 15.11 34.64 1.75
4794 7496 1.800586 CGGTGAATGGGATGCTATTCG 59.199 52.381 16.50 4.08 36.36 3.34
4795 7497 2.154462 GGTGAATGGGATGCTATTCGG 58.846 52.381 16.50 0.00 36.36 4.30
4796 7498 2.487265 GGTGAATGGGATGCTATTCGGT 60.487 50.000 16.50 0.00 36.36 4.69
4797 7499 3.214328 GTGAATGGGATGCTATTCGGTT 58.786 45.455 16.50 0.00 36.36 4.44
4798 7500 3.632145 GTGAATGGGATGCTATTCGGTTT 59.368 43.478 16.50 0.00 36.36 3.27
4799 7501 4.819630 GTGAATGGGATGCTATTCGGTTTA 59.180 41.667 16.50 0.00 36.36 2.01
4809 7511 5.741011 TGCTATTCGGTTTAGTCATTCCTT 58.259 37.500 0.00 0.00 0.00 3.36
4842 7544 2.093921 GCTCTGGAGTAGGTTCAGGTTC 60.094 54.545 0.00 0.00 0.00 3.62
4857 7559 0.322187 GGTTCGGGGCATAACAGTGT 60.322 55.000 0.00 0.00 0.00 3.55
4863 7565 1.812571 GGGGCATAACAGTGTGTCTTG 59.187 52.381 0.00 0.00 0.00 3.02
4871 7573 0.883833 CAGTGTGTCTTGGGGCATTC 59.116 55.000 0.00 0.00 0.00 2.67
4930 7632 3.556513 CTTGTCGATATGTCTAGTCCGC 58.443 50.000 0.00 0.00 0.00 5.54
5022 7729 4.358214 TCCACCCTCAAAAAGAAAAAGGT 58.642 39.130 0.00 0.00 0.00 3.50
5051 7758 3.165606 CCGAAGGCTGAGCTGAATT 57.834 52.632 3.72 0.00 46.14 2.17
5052 7759 0.731417 CCGAAGGCTGAGCTGAATTG 59.269 55.000 3.72 0.00 46.14 2.32
5095 7802 2.185350 CACAGGTAGAGGGCTGCG 59.815 66.667 0.00 0.00 0.00 5.18
5105 7812 0.668535 GAGGGCTGCGAAAACTGTTT 59.331 50.000 0.00 0.00 0.00 2.83
5106 7813 0.385390 AGGGCTGCGAAAACTGTTTG 59.615 50.000 6.53 0.00 0.00 2.93
5231 7938 4.409901 TGGGATCTCTGATGCATTTCACTA 59.590 41.667 0.00 0.00 0.00 2.74
5232 7939 5.104402 TGGGATCTCTGATGCATTTCACTAA 60.104 40.000 0.00 0.00 0.00 2.24
5233 7940 5.824624 GGGATCTCTGATGCATTTCACTAAA 59.175 40.000 0.00 0.00 0.00 1.85
5234 7941 6.489361 GGGATCTCTGATGCATTTCACTAAAT 59.511 38.462 0.00 0.00 35.65 1.40
5383 8102 2.687935 TGAGAAAAGGTGCCTGTGAAAC 59.312 45.455 0.00 0.00 37.35 2.78
5419 8138 1.689959 CACGCTGTGATCCAAAAAGC 58.310 50.000 3.04 0.00 35.23 3.51
5450 8169 5.561725 GCTGTACTTGGAGAAGAGCAAAAAG 60.562 44.000 0.00 0.00 30.44 2.27
5452 8171 5.760253 TGTACTTGGAGAAGAGCAAAAAGAG 59.240 40.000 0.00 0.00 32.98 2.85
5453 8172 4.140536 ACTTGGAGAAGAGCAAAAAGAGG 58.859 43.478 0.00 0.00 32.98 3.69
5454 8173 4.141390 ACTTGGAGAAGAGCAAAAAGAGGA 60.141 41.667 0.00 0.00 32.98 3.71
5455 8174 4.437682 TGGAGAAGAGCAAAAAGAGGAA 57.562 40.909 0.00 0.00 0.00 3.36
5456 8175 4.392940 TGGAGAAGAGCAAAAAGAGGAAG 58.607 43.478 0.00 0.00 0.00 3.46
5457 8176 4.103153 TGGAGAAGAGCAAAAAGAGGAAGA 59.897 41.667 0.00 0.00 0.00 2.87
5458 8177 4.694982 GGAGAAGAGCAAAAAGAGGAAGAG 59.305 45.833 0.00 0.00 0.00 2.85
5459 8178 5.512232 GGAGAAGAGCAAAAAGAGGAAGAGA 60.512 44.000 0.00 0.00 0.00 3.10
5460 8179 5.550290 AGAAGAGCAAAAAGAGGAAGAGAG 58.450 41.667 0.00 0.00 0.00 3.20
5495 8226 1.885887 TGCTAGCACAACATCAAACCC 59.114 47.619 14.93 0.00 0.00 4.11
5496 8227 1.135689 GCTAGCACAACATCAAACCCG 60.136 52.381 10.63 0.00 0.00 5.28
5563 8296 1.396301 CAGATCCTTCTGCTGCGAAAC 59.604 52.381 7.95 2.46 42.79 2.78
5564 8297 0.729690 GATCCTTCTGCTGCGAAACC 59.270 55.000 7.95 0.00 0.00 3.27
5565 8298 0.678048 ATCCTTCTGCTGCGAAACCC 60.678 55.000 7.95 0.00 0.00 4.11
5566 8299 1.600636 CCTTCTGCTGCGAAACCCA 60.601 57.895 7.95 0.00 0.00 4.51
5567 8300 1.580845 CCTTCTGCTGCGAAACCCAG 61.581 60.000 7.95 0.00 0.00 4.45
5576 8309 3.195661 CTGCGAAACCCAGACCTAATAC 58.804 50.000 0.00 0.00 32.03 1.89
5606 8339 6.036735 GGCGCTGAAACTGTTAATATAGTCAA 59.963 38.462 7.64 0.00 0.00 3.18
5888 8623 1.322442 AGGAAGAAGTTGGTTGCAGC 58.678 50.000 0.00 0.00 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
263 266 8.028938 GTGGCAATTTTAGTTTGTAGATCATGT 58.971 33.333 0.00 0.00 0.00 3.21
371 380 8.096621 TCAAAACTAGACCCCATGTTGATATA 57.903 34.615 0.00 0.00 0.00 0.86
496 505 5.060200 CACGTATGAATAGATGACATCAGCG 59.940 44.000 17.57 9.03 37.34 5.18
543 552 1.825622 TTTGCACATCGCCCACACA 60.826 52.632 0.00 0.00 41.33 3.72
573 582 5.461032 TTTTCAGAAATGTTAACGCCCAT 57.539 34.783 0.26 0.00 0.00 4.00
611 620 5.462398 GTGATATTCGGTGTTTACTAGCAGG 59.538 44.000 0.00 0.00 0.00 4.85
657 666 5.460419 GTGATTATTTGCCTACTGTCTCTCG 59.540 44.000 0.00 0.00 0.00 4.04
723 732 8.756486 TCACAATCCAAATCTAATGATGATGT 57.244 30.769 0.00 0.00 32.44 3.06
741 2456 7.121168 TCAGGTTTGGAGTATGAAATCACAATC 59.879 37.037 0.00 0.00 0.00 2.67
874 2605 2.635338 GACCACGGTGTTTTCGGC 59.365 61.111 7.45 0.00 0.00 5.54
934 2665 1.034838 ATCTCCGTCTCGCTCTTGCT 61.035 55.000 0.00 0.00 36.97 3.91
940 2671 0.956410 CGGGATATCTCCGTCTCGCT 60.956 60.000 18.95 0.00 43.11 4.93
1030 2762 0.752054 GGACTGGATGGAGCAGAGAG 59.248 60.000 0.00 0.00 0.00 3.20
1070 2802 4.530857 GAGGGACGCCATGGGACG 62.531 72.222 15.13 12.17 0.00 4.79
1384 3364 8.476657 ACGATGCATCATCAGAAATCTAATAG 57.523 34.615 25.70 6.17 40.54 1.73
1404 3384 7.475015 ACATCCAATTTTCAACAGATACGATG 58.525 34.615 0.00 0.00 0.00 3.84
1410 3390 5.009631 TCCGACATCCAATTTTCAACAGAT 58.990 37.500 0.00 0.00 0.00 2.90
1444 3428 5.455392 CAGAACAAACAATCTGCGATTTCT 58.545 37.500 1.76 0.15 36.92 2.52
1445 3429 4.618489 CCAGAACAAACAATCTGCGATTTC 59.382 41.667 1.76 0.00 41.36 2.17
1446 3430 4.549458 CCAGAACAAACAATCTGCGATTT 58.451 39.130 1.76 0.00 41.36 2.17
1447 3431 3.057315 CCCAGAACAAACAATCTGCGATT 60.057 43.478 0.00 0.00 41.36 3.34
1448 3432 2.489329 CCCAGAACAAACAATCTGCGAT 59.511 45.455 0.00 0.00 41.36 4.58
1449 3433 1.879380 CCCAGAACAAACAATCTGCGA 59.121 47.619 0.00 0.00 41.36 5.10
1450 3434 1.666888 GCCCAGAACAAACAATCTGCG 60.667 52.381 0.00 0.00 41.36 5.18
1451 3435 1.340889 TGCCCAGAACAAACAATCTGC 59.659 47.619 0.00 0.00 41.36 4.26
1452 3436 2.605338 CGTGCCCAGAACAAACAATCTG 60.605 50.000 0.00 0.00 42.15 2.90
1453 3437 1.608590 CGTGCCCAGAACAAACAATCT 59.391 47.619 0.00 0.00 0.00 2.40
1454 3438 1.930371 GCGTGCCCAGAACAAACAATC 60.930 52.381 0.00 0.00 0.00 2.67
1455 3439 0.031994 GCGTGCCCAGAACAAACAAT 59.968 50.000 0.00 0.00 0.00 2.71
1456 3440 1.315981 TGCGTGCCCAGAACAAACAA 61.316 50.000 0.00 0.00 0.00 2.83
1457 3441 1.750780 TGCGTGCCCAGAACAAACA 60.751 52.632 0.00 0.00 0.00 2.83
1458 3442 1.299089 GTGCGTGCCCAGAACAAAC 60.299 57.895 0.00 0.00 0.00 2.93
1459 3443 1.315981 TTGTGCGTGCCCAGAACAAA 61.316 50.000 0.00 0.00 0.00 2.83
1460 3444 1.106351 ATTGTGCGTGCCCAGAACAA 61.106 50.000 0.15 0.15 35.41 2.83
1484 3468 6.075949 AGACAGACAGGATGGTACTACTAA 57.924 41.667 0.00 0.00 43.62 2.24
1518 3502 4.891168 TGCAAAGCAGATGATGGTCATATT 59.109 37.500 0.00 0.00 39.18 1.28
1584 3568 9.119418 TCTTGAATTACAAATGTCTGAACAAGA 57.881 29.630 0.00 0.00 38.08 3.02
1722 3706 8.695456 TGAGAATAACAGAGACAACAGCATATA 58.305 33.333 0.00 0.00 0.00 0.86
1848 3835 4.443315 CCAAGGCCACTCAAAAGTCAAAAT 60.443 41.667 5.01 0.00 31.71 1.82
1901 3888 3.597182 TCCTATTCAGGTCATATGGGCA 58.403 45.455 2.13 0.00 43.18 5.36
1902 3889 4.640771 TTCCTATTCAGGTCATATGGGC 57.359 45.455 2.13 0.00 43.18 5.36
1903 3890 6.633325 AGATTCCTATTCAGGTCATATGGG 57.367 41.667 2.13 0.00 43.18 4.00
1904 3891 8.159447 TCAAAGATTCCTATTCAGGTCATATGG 58.841 37.037 2.13 0.00 43.18 2.74
1905 3892 9.565090 TTCAAAGATTCCTATTCAGGTCATATG 57.435 33.333 0.00 0.00 43.18 1.78
1906 3893 9.566432 GTTCAAAGATTCCTATTCAGGTCATAT 57.434 33.333 0.00 0.00 43.18 1.78
1907 3894 7.710907 CGTTCAAAGATTCCTATTCAGGTCATA 59.289 37.037 0.00 0.00 43.18 2.15
1908 3895 6.540189 CGTTCAAAGATTCCTATTCAGGTCAT 59.460 38.462 0.00 0.00 43.18 3.06
1909 3896 5.874810 CGTTCAAAGATTCCTATTCAGGTCA 59.125 40.000 0.00 0.00 43.18 4.02
1932 3919 4.521130 TCCGGAGATTCCTATTCATTCG 57.479 45.455 0.00 0.00 33.30 3.34
1934 3921 6.272324 TGGTATTCCGGAGATTCCTATTCATT 59.728 38.462 3.34 0.00 33.30 2.57
1939 3938 4.489737 TGTGGTATTCCGGAGATTCCTAT 58.510 43.478 3.34 0.00 33.30 2.57
1950 3949 4.119862 CTGGAGTTACATGTGGTATTCCG 58.880 47.826 9.11 3.38 38.22 4.30
1959 3958 5.654603 TTCGTCATACTGGAGTTACATGT 57.345 39.130 2.69 2.69 0.00 3.21
1960 3959 6.367695 TGTTTTCGTCATACTGGAGTTACATG 59.632 38.462 0.00 0.00 0.00 3.21
2008 4008 5.337578 TCATGTCAGATATGAAACACGGA 57.662 39.130 7.37 0.00 31.98 4.69
2010 4010 8.483218 GTCTATTCATGTCAGATATGAAACACG 58.517 37.037 22.30 12.82 44.83 4.49
2014 4014 8.633561 ACTCGTCTATTCATGTCAGATATGAAA 58.366 33.333 22.30 12.84 44.83 2.69
2065 4065 5.497474 TCTAAGGTTTATGGTTTGCTCTCC 58.503 41.667 0.00 0.00 0.00 3.71
2071 4071 9.125026 AGAGCAATATCTAAGGTTTATGGTTTG 57.875 33.333 0.00 0.00 0.00 2.93
2227 4227 4.120589 GTTCGTCTTGTCCTTGAGTTCTT 58.879 43.478 0.00 0.00 0.00 2.52
2299 4299 4.703093 GTGCCTCTAACAAGAGTCTCTACT 59.297 45.833 1.88 0.00 39.21 2.57
2328 4328 4.201891 GCTTGTATTCTGGAGCATCAACTG 60.202 45.833 0.00 0.00 36.25 3.16
2414 4414 2.554032 CCCAGGCAAAGTTTAGACACTG 59.446 50.000 0.00 0.00 0.00 3.66
2430 4444 2.371841 TGGAATATTCGGTGATCCCAGG 59.628 50.000 9.32 0.00 0.00 4.45
2541 4555 1.959042 AGCCAGCAATTCCTGTATCG 58.041 50.000 0.00 0.00 0.00 2.92
2542 4556 5.065914 TGAATAGCCAGCAATTCCTGTATC 58.934 41.667 0.00 0.00 32.25 2.24
2605 4619 6.389830 TGTTGATGCATATAACCCATGTTC 57.610 37.500 18.42 0.00 35.87 3.18
2704 4724 2.338809 ACAGGTGTGGAGGAATCAAGA 58.661 47.619 0.00 0.00 0.00 3.02
2912 4934 6.802608 TGACCTATACAGAACTGAAATACCG 58.197 40.000 8.87 1.34 0.00 4.02
3013 5043 8.530311 ACATAGACAATTACAAATTGGCATGAA 58.470 29.630 22.89 9.53 39.44 2.57
3034 5064 8.242085 GATTGTGATGAGCAATCTAGACATAG 57.758 38.462 0.00 0.00 45.09 2.23
3066 5096 6.096282 ACCTTTCCATTATTTGGTTATGGACG 59.904 38.462 0.00 0.00 45.53 4.79
3089 5119 6.801539 TGCGGAATTCTCATATAATGAACC 57.198 37.500 5.23 0.00 39.11 3.62
3158 5188 7.301054 GTCCAATAGACAAAGTTCATTCACAG 58.699 38.462 0.00 0.00 45.55 3.66
3185 5215 5.106157 GGTTATCACCTTTGACCATGACTTG 60.106 44.000 0.00 0.00 40.44 3.16
3201 5231 6.808212 CCATTCAATCAGTTGTTGGTTATCAC 59.192 38.462 0.00 0.00 36.17 3.06
3208 5238 3.947910 AGCCATTCAATCAGTTGTTGG 57.052 42.857 7.85 7.85 40.00 3.77
3240 5270 1.532868 CGGAAGCCTGAAACTTCACAG 59.467 52.381 5.92 0.00 44.35 3.66
3257 5287 5.892119 AGGTGATAACTTCTCTGATAACGGA 59.108 40.000 0.00 0.00 0.00 4.69
3399 5429 3.095163 AGAGGGGCAGGGCAGATG 61.095 66.667 0.00 0.00 0.00 2.90
3400 5430 2.771762 GAGAGGGGCAGGGCAGAT 60.772 66.667 0.00 0.00 0.00 2.90
3404 5434 4.120755 CTTGGAGAGGGGCAGGGC 62.121 72.222 0.00 0.00 0.00 5.19
3407 5437 2.588989 GAGCTTGGAGAGGGGCAG 59.411 66.667 0.00 0.00 0.00 4.85
3408 5438 3.011517 GGAGCTTGGAGAGGGGCA 61.012 66.667 0.00 0.00 0.00 5.36
3409 5439 2.690510 AGGAGCTTGGAGAGGGGC 60.691 66.667 0.00 0.00 0.00 5.80
3425 5479 1.001746 TGAGTGCAGAGCCTGAAAGAG 59.998 52.381 6.40 0.00 34.07 2.85
3452 5506 3.637694 CCCTCTAGTTACCTGAGGCTAAC 59.362 52.174 13.39 7.10 44.32 2.34
3463 5517 3.766051 TCGGTCCTTTTCCCTCTAGTTAC 59.234 47.826 0.00 0.00 0.00 2.50
3478 5532 3.515502 TGTTGAAGATCATTCTCGGTCCT 59.484 43.478 0.00 0.00 0.00 3.85
3482 5536 3.529533 AGCTGTTGAAGATCATTCTCGG 58.470 45.455 0.00 1.65 0.00 4.63
3483 5537 5.542616 AAAGCTGTTGAAGATCATTCTCG 57.457 39.130 0.00 0.00 0.00 4.04
3484 5538 7.840342 TCTAAAGCTGTTGAAGATCATTCTC 57.160 36.000 0.00 0.00 0.00 2.87
3485 5539 8.266473 AGATCTAAAGCTGTTGAAGATCATTCT 58.734 33.333 14.83 0.21 43.20 2.40
3501 5555 4.813697 GGTGTCCAGATCAAGATCTAAAGC 59.186 45.833 11.93 0.25 45.78 3.51
3503 5557 6.325028 CCTAGGTGTCCAGATCAAGATCTAAA 59.675 42.308 11.93 1.58 45.78 1.85
3504 5558 5.835819 CCTAGGTGTCCAGATCAAGATCTAA 59.164 44.000 11.93 1.91 45.78 2.10
3505 5559 5.134509 TCCTAGGTGTCCAGATCAAGATCTA 59.865 44.000 11.93 0.00 45.78 1.98
3553 5608 0.178921 AGTGGGCAGAGAAGGTGAGA 60.179 55.000 0.00 0.00 0.00 3.27
3616 5671 1.372501 AAATGGCACCCTCTACCACT 58.627 50.000 0.00 0.00 35.99 4.00
3630 5686 2.095567 CCAGCGAACAGTCTGAAAATGG 60.096 50.000 6.91 4.39 32.26 3.16
3634 5690 3.128349 GTTACCAGCGAACAGTCTGAAA 58.872 45.455 6.91 0.00 32.26 2.69
3677 5733 2.382882 CTCAGATGTCTGCCAGTAGGA 58.617 52.381 5.14 0.00 43.46 2.94
3680 5736 0.826715 GGCTCAGATGTCTGCCAGTA 59.173 55.000 5.14 0.00 44.34 2.74
3701 5757 1.078497 CAATGTAGCGGTGCCTCCA 60.078 57.895 0.00 0.00 35.57 3.86
3706 5762 3.917985 CCTTAAAAACAATGTAGCGGTGC 59.082 43.478 0.00 0.00 0.00 5.01
3707 5763 3.917985 GCCTTAAAAACAATGTAGCGGTG 59.082 43.478 0.00 0.00 0.00 4.94
3708 5764 3.365565 CGCCTTAAAAACAATGTAGCGGT 60.366 43.478 0.00 0.00 37.55 5.68
3709 5765 3.168193 CGCCTTAAAAACAATGTAGCGG 58.832 45.455 0.00 0.00 37.55 5.52
3710 5766 3.817238 ACGCCTTAAAAACAATGTAGCG 58.183 40.909 0.00 0.00 45.94 4.26
3711 5767 4.082949 AGGACGCCTTAAAAACAATGTAGC 60.083 41.667 0.00 0.00 0.00 3.58
3712 5768 5.390613 CAGGACGCCTTAAAAACAATGTAG 58.609 41.667 0.00 0.00 0.00 2.74
3713 5769 4.320641 GCAGGACGCCTTAAAAACAATGTA 60.321 41.667 0.00 0.00 32.94 2.29
3714 5770 3.552068 GCAGGACGCCTTAAAAACAATGT 60.552 43.478 0.00 0.00 32.94 2.71
3715 5771 2.986479 GCAGGACGCCTTAAAAACAATG 59.014 45.455 0.00 0.00 32.94 2.82
3716 5772 3.297830 GCAGGACGCCTTAAAAACAAT 57.702 42.857 0.00 0.00 32.94 2.71
3717 5773 2.785713 GCAGGACGCCTTAAAAACAA 57.214 45.000 0.00 0.00 32.94 2.83
3730 5786 1.202428 CCTAAGCGTCTAAGGCAGGAC 60.202 57.143 0.00 0.00 27.35 3.85
3731 5787 1.112113 CCTAAGCGTCTAAGGCAGGA 58.888 55.000 0.00 0.00 27.35 3.86
3732 5788 3.669354 CCTAAGCGTCTAAGGCAGG 57.331 57.895 0.00 0.00 0.00 4.85
3751 5807 2.591429 TGCCATGGCGCCTTATCG 60.591 61.111 30.87 12.89 45.51 2.92
3752 5808 2.912624 GCTGCCATGGCGCCTTATC 61.913 63.158 30.85 15.97 45.51 1.75
3753 5809 2.908940 GCTGCCATGGCGCCTTAT 60.909 61.111 30.85 11.29 45.51 1.73
3766 5822 1.600413 GGCATATTTGTAAGGCGCTGC 60.600 52.381 7.64 4.69 0.00 5.25
3767 5823 1.001378 GGGCATATTTGTAAGGCGCTG 60.001 52.381 7.64 0.00 34.95 5.18
3768 5824 1.318576 GGGCATATTTGTAAGGCGCT 58.681 50.000 7.64 0.00 34.95 5.92
3769 5825 0.040425 CGGGCATATTTGTAAGGCGC 60.040 55.000 0.00 0.00 0.00 6.53
3770 5826 0.040425 GCGGGCATATTTGTAAGGCG 60.040 55.000 0.00 0.00 0.00 5.52
3771 5827 0.313987 GGCGGGCATATTTGTAAGGC 59.686 55.000 0.00 0.00 0.00 4.35
3772 5828 1.981256 AGGCGGGCATATTTGTAAGG 58.019 50.000 3.78 0.00 0.00 2.69
3773 5829 3.502211 CCTAAGGCGGGCATATTTGTAAG 59.498 47.826 3.78 0.00 0.00 2.34
3774 5830 3.117813 ACCTAAGGCGGGCATATTTGTAA 60.118 43.478 3.78 0.00 0.00 2.41
3775 5831 2.440253 ACCTAAGGCGGGCATATTTGTA 59.560 45.455 3.78 0.00 0.00 2.41
3776 5832 1.214424 ACCTAAGGCGGGCATATTTGT 59.786 47.619 3.78 0.00 0.00 2.83
3777 5833 1.608590 CACCTAAGGCGGGCATATTTG 59.391 52.381 3.78 0.00 0.00 2.32
3778 5834 1.981256 CACCTAAGGCGGGCATATTT 58.019 50.000 3.78 0.00 0.00 1.40
3779 5835 0.537371 GCACCTAAGGCGGGCATATT 60.537 55.000 3.78 0.00 0.00 1.28
3780 5836 1.073199 GCACCTAAGGCGGGCATAT 59.927 57.895 3.78 0.00 0.00 1.78
3781 5837 1.632018 AAGCACCTAAGGCGGGCATA 61.632 55.000 3.78 0.00 36.08 3.14
3782 5838 1.632018 TAAGCACCTAAGGCGGGCAT 61.632 55.000 3.78 0.00 36.08 4.40
3783 5839 2.252072 CTAAGCACCTAAGGCGGGCA 62.252 60.000 3.78 0.00 36.08 5.36
3784 5840 1.523938 CTAAGCACCTAAGGCGGGC 60.524 63.158 0.00 0.00 36.08 6.13
3785 5841 1.146263 CCTAAGCACCTAAGGCGGG 59.854 63.158 0.00 0.00 36.08 6.13
3786 5842 1.523938 GCCTAAGCACCTAAGGCGG 60.524 63.158 0.00 0.00 45.82 6.13
3787 5843 4.126524 GCCTAAGCACCTAAGGCG 57.873 61.111 0.00 0.00 45.82 5.52
3789 5845 0.535335 TGACGCCTAAGCACCTAAGG 59.465 55.000 0.00 0.00 39.83 2.69
3790 5846 1.641577 GTGACGCCTAAGCACCTAAG 58.358 55.000 0.00 0.00 39.83 2.18
3791 5847 0.248289 GGTGACGCCTAAGCACCTAA 59.752 55.000 0.00 0.00 46.56 2.69
3792 5848 1.895238 GGTGACGCCTAAGCACCTA 59.105 57.895 0.00 0.00 46.56 3.08
3793 5849 2.663196 GGTGACGCCTAAGCACCT 59.337 61.111 0.00 0.00 46.56 4.00
3804 5860 2.023318 CTCTAGCGGGTAGGTGACG 58.977 63.158 13.77 0.00 0.00 4.35
3805 5861 1.035932 TGCTCTAGCGGGTAGGTGAC 61.036 60.000 13.77 2.89 45.83 3.67
3806 5862 0.752009 CTGCTCTAGCGGGTAGGTGA 60.752 60.000 13.77 0.00 45.83 4.02
3807 5863 1.736586 CTGCTCTAGCGGGTAGGTG 59.263 63.158 13.77 8.60 45.83 4.00
3808 5864 4.261701 CTGCTCTAGCGGGTAGGT 57.738 61.111 13.77 0.00 45.83 3.08
3814 5870 4.663444 GCATACCTGCTCTAGCGG 57.337 61.111 3.69 3.69 45.32 5.52
3823 5879 3.448686 CGACCTAAGACAAGCATACCTG 58.551 50.000 0.00 0.00 0.00 4.00
3824 5880 2.159085 GCGACCTAAGACAAGCATACCT 60.159 50.000 0.00 0.00 0.00 3.08
3825 5881 2.159085 AGCGACCTAAGACAAGCATACC 60.159 50.000 0.00 0.00 0.00 2.73
3826 5882 3.166489 AGCGACCTAAGACAAGCATAC 57.834 47.619 0.00 0.00 0.00 2.39
3827 5883 3.887621 AAGCGACCTAAGACAAGCATA 57.112 42.857 0.00 0.00 0.00 3.14
3828 5884 2.770164 AAGCGACCTAAGACAAGCAT 57.230 45.000 0.00 0.00 0.00 3.79
3829 5885 2.543777 AAAGCGACCTAAGACAAGCA 57.456 45.000 0.00 0.00 0.00 3.91
3830 5886 2.671888 GGTAAAGCGACCTAAGACAAGC 59.328 50.000 0.00 0.00 36.47 4.01
3831 5887 3.678548 GTGGTAAAGCGACCTAAGACAAG 59.321 47.826 6.97 0.00 40.46 3.16
3832 5888 3.555586 GGTGGTAAAGCGACCTAAGACAA 60.556 47.826 6.97 0.00 41.98 3.18
3833 5889 2.028748 GGTGGTAAAGCGACCTAAGACA 60.029 50.000 6.97 0.00 41.98 3.41
3834 5890 2.614779 GGTGGTAAAGCGACCTAAGAC 58.385 52.381 6.97 0.00 41.98 3.01
3840 5896 4.937015 TGTTTATAAGGTGGTAAAGCGACC 59.063 41.667 0.00 0.00 45.08 4.79
3841 5897 6.484818 TTGTTTATAAGGTGGTAAAGCGAC 57.515 37.500 0.00 0.00 0.00 5.19
3842 5898 6.403855 GCATTGTTTATAAGGTGGTAAAGCGA 60.404 38.462 0.00 0.00 0.00 4.93
3843 5899 5.741982 GCATTGTTTATAAGGTGGTAAAGCG 59.258 40.000 0.00 0.00 0.00 4.68
3844 5900 6.530181 GTGCATTGTTTATAAGGTGGTAAAGC 59.470 38.462 0.00 0.00 0.00 3.51
3845 5901 7.754924 CAGTGCATTGTTTATAAGGTGGTAAAG 59.245 37.037 0.13 0.00 0.00 1.85
3846 5902 7.598278 CAGTGCATTGTTTATAAGGTGGTAAA 58.402 34.615 0.13 0.00 0.00 2.01
3847 5903 6.349777 GCAGTGCATTGTTTATAAGGTGGTAA 60.350 38.462 11.09 0.00 0.00 2.85
3848 5904 5.124776 GCAGTGCATTGTTTATAAGGTGGTA 59.875 40.000 11.09 0.00 0.00 3.25
3849 5905 4.082245 GCAGTGCATTGTTTATAAGGTGGT 60.082 41.667 11.09 0.00 0.00 4.16
3850 5906 4.158394 AGCAGTGCATTGTTTATAAGGTGG 59.842 41.667 19.20 0.00 0.00 4.61
3851 5907 5.314923 AGCAGTGCATTGTTTATAAGGTG 57.685 39.130 19.20 0.00 0.00 4.00
3852 5908 6.460123 GCATAGCAGTGCATTGTTTATAAGGT 60.460 38.462 19.20 0.00 44.43 3.50
3853 5909 5.916883 GCATAGCAGTGCATTGTTTATAAGG 59.083 40.000 19.20 0.00 44.43 2.69
3854 5910 6.981379 GCATAGCAGTGCATTGTTTATAAG 57.019 37.500 19.20 0.00 44.43 1.73
3933 5990 0.960861 GACTGGTACTTGGGCTTGGC 60.961 60.000 0.00 0.00 0.00 4.52
3960 6017 4.022329 CACCAAAGTACCCTGAAATGGAAC 60.022 45.833 0.00 0.00 0.00 3.62
3975 6032 0.546122 TCAGCACAGGACACCAAAGT 59.454 50.000 0.00 0.00 0.00 2.66
4220 6708 1.871039 TGCGAGGCACTTTGTTAGAAC 59.129 47.619 0.00 0.00 41.55 3.01
4224 6712 2.143122 CTTCTGCGAGGCACTTTGTTA 58.857 47.619 0.00 0.00 41.55 2.41
4246 6734 6.183360 TGCAAGCTAAAGCAGGATAAGAAATC 60.183 38.462 4.54 0.00 45.16 2.17
4296 6784 8.985315 ATGTCACTGAAACATATCCAATGTAT 57.015 30.769 0.00 0.00 35.62 2.29
4334 6822 6.918022 GGTTTCTCAATCAAGTTTTGTACCTG 59.082 38.462 0.00 0.00 0.00 4.00
4436 7024 5.067805 ACAGAAAGTGAACCCAAAGCTAAAG 59.932 40.000 0.00 0.00 0.00 1.85
4457 7107 4.818534 ACTGACATAGCAACAACAACAG 57.181 40.909 0.00 0.00 0.00 3.16
4466 7116 6.463360 TGTGATGAAACTACTGACATAGCAA 58.537 36.000 0.00 0.00 0.00 3.91
4467 7117 6.036577 TGTGATGAAACTACTGACATAGCA 57.963 37.500 0.00 0.00 0.00 3.49
4468 7118 7.545362 AATGTGATGAAACTACTGACATAGC 57.455 36.000 0.00 0.00 0.00 2.97
4469 7119 9.154847 TCAAATGTGATGAAACTACTGACATAG 57.845 33.333 0.00 0.00 0.00 2.23
4472 7122 7.984422 ATCAAATGTGATGAAACTACTGACA 57.016 32.000 0.00 0.00 43.13 3.58
4475 7125 9.121517 GACAAATCAAATGTGATGAAACTACTG 57.878 33.333 0.00 0.00 44.02 2.74
4491 7154 9.072375 TGGTAATATCAAGTGTGACAAATCAAA 57.928 29.630 0.00 0.00 36.31 2.69
4493 7156 7.882791 AGTGGTAATATCAAGTGTGACAAATCA 59.117 33.333 0.00 0.00 36.31 2.57
4580 7282 8.402798 TGCATAACCTGAAAAATAACAAGAGA 57.597 30.769 0.00 0.00 0.00 3.10
4588 7290 7.039434 TGTCCATGTTGCATAACCTGAAAAATA 60.039 33.333 0.00 0.00 35.29 1.40
4768 7470 1.134220 GCATCCCATTCACCGACCTAA 60.134 52.381 0.00 0.00 0.00 2.69
4773 7475 2.547855 CGAATAGCATCCCATTCACCGA 60.548 50.000 0.00 0.00 31.86 4.69
4781 7483 3.452990 TGACTAAACCGAATAGCATCCCA 59.547 43.478 0.00 0.00 0.00 4.37
4790 7492 9.106070 GTGTATAAAGGAATGACTAAACCGAAT 57.894 33.333 0.00 0.00 0.00 3.34
4791 7493 8.316214 AGTGTATAAAGGAATGACTAAACCGAA 58.684 33.333 0.00 0.00 0.00 4.30
4792 7494 7.844009 AGTGTATAAAGGAATGACTAAACCGA 58.156 34.615 0.00 0.00 0.00 4.69
4793 7495 9.590451 TTAGTGTATAAAGGAATGACTAAACCG 57.410 33.333 0.00 0.00 0.00 4.44
4799 7501 8.763601 AGAGCTTTAGTGTATAAAGGAATGACT 58.236 33.333 8.89 0.00 35.64 3.41
4809 7511 7.124052 ACCTACTCCAGAGCTTTAGTGTATAA 58.876 38.462 0.00 0.00 0.00 0.98
4842 7544 0.036388 AGACACACTGTTATGCCCCG 60.036 55.000 0.00 0.00 0.00 5.73
4871 7573 5.981174 ACCAAGAATTTGAATAATGGGCAG 58.019 37.500 0.00 0.00 36.36 4.85
5022 7729 3.811083 TCAGCCTTCGGAAACAGTTTTA 58.189 40.909 0.00 0.00 0.00 1.52
5045 7752 4.324267 AGAAGTCGTTAACCCCAATTCAG 58.676 43.478 0.00 0.00 0.00 3.02
5051 7758 3.118334 TGTTGAAGAAGTCGTTAACCCCA 60.118 43.478 0.00 0.00 0.00 4.96
5052 7759 3.469739 TGTTGAAGAAGTCGTTAACCCC 58.530 45.455 0.00 0.00 0.00 4.95
5095 7802 6.706716 AGAGGTAGTAGCTTCAAACAGTTTTC 59.293 38.462 2.85 0.00 0.00 2.29
5105 7812 4.048970 AGGAACAGAGGTAGTAGCTTCA 57.951 45.455 2.85 0.00 0.00 3.02
5106 7813 6.527057 TTTAGGAACAGAGGTAGTAGCTTC 57.473 41.667 2.85 0.00 0.00 3.86
5171 7878 9.578576 AATTATATACTACTACCTCCGTTCACA 57.421 33.333 0.00 0.00 0.00 3.58
5231 7938 3.492421 ACTGATTTCGCATTCGCATTT 57.508 38.095 0.00 0.00 38.40 2.32
5232 7939 4.818534 ATACTGATTTCGCATTCGCATT 57.181 36.364 0.00 0.00 38.40 3.56
5233 7940 4.818534 AATACTGATTTCGCATTCGCAT 57.181 36.364 0.00 0.00 38.40 4.73
5234 7941 5.922739 ATAATACTGATTTCGCATTCGCA 57.077 34.783 0.00 0.00 38.40 5.10
5235 7942 7.510630 ACTAATAATACTGATTTCGCATTCGC 58.489 34.615 0.00 0.00 35.26 4.70
5236 7943 9.939047 GTACTAATAATACTGATTTCGCATTCG 57.061 33.333 0.00 0.00 0.00 3.34
5277 7987 3.364565 GCTTTGCATTGTTTTCAGCCATG 60.365 43.478 0.00 0.00 0.00 3.66
5383 8102 4.558470 CAGCGTGCTTAAACCATTGTAATG 59.442 41.667 0.00 0.00 36.17 1.90
5419 8138 1.813178 TCTCCAAGTACAGCTCTGTCG 59.187 52.381 5.72 0.00 43.74 4.35
5470 8189 3.961480 TGATGTTGTGCTAGCAGTACT 57.039 42.857 20.03 8.86 31.77 2.73
5480 8211 1.288752 CCCGGGTTTGATGTTGTGC 59.711 57.895 14.18 0.00 0.00 4.57
5485 8216 2.275380 GCTTGCCCGGGTTTGATGT 61.275 57.895 24.63 0.00 0.00 3.06
5495 8226 1.021968 GGTGTTTATAGGCTTGCCCG 58.978 55.000 8.17 0.00 39.21 6.13
5496 8227 1.749063 GTGGTGTTTATAGGCTTGCCC 59.251 52.381 8.17 0.00 0.00 5.36
5563 8296 1.617357 GCCTACCGTATTAGGTCTGGG 59.383 57.143 9.14 4.97 44.68 4.45
5564 8297 1.268899 CGCCTACCGTATTAGGTCTGG 59.731 57.143 0.00 0.00 44.68 3.86
5565 8298 1.335689 GCGCCTACCGTATTAGGTCTG 60.336 57.143 0.00 0.00 44.68 3.51
5566 8299 0.957362 GCGCCTACCGTATTAGGTCT 59.043 55.000 0.00 0.00 44.68 3.85
5567 8300 0.957362 AGCGCCTACCGTATTAGGTC 59.043 55.000 2.29 0.00 44.68 3.85
5576 8309 0.949105 AACAGTTTCAGCGCCTACCG 60.949 55.000 2.29 0.00 40.75 4.02
5606 8339 2.098117 GCTGCTTTGACAGTTTCAGTGT 59.902 45.455 0.00 0.00 39.96 3.55
5864 8597 4.754322 TGCAACCAACTTCTTCCTTTTTC 58.246 39.130 0.00 0.00 0.00 2.29
5888 8623 5.679734 AGTAAGTCACATGTTCAGCAAAG 57.320 39.130 0.00 0.00 0.00 2.77


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.