Multiple sequence alignment - TraesCS7B01G290800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G290800 chr7B 100.000 4346 0 0 1 4346 527035385 527039730 0.000000e+00 8026.0
1 TraesCS7B01G290800 chr7B 77.320 291 52 8 20 299 677658166 677657879 4.500000e-35 159.0
2 TraesCS7B01G290800 chr7D 93.136 3788 161 42 343 4079 498711187 498714926 0.000000e+00 5463.0
3 TraesCS7B01G290800 chr7D 97.959 147 3 0 4200 4346 498715199 498715345 5.580000e-64 255.0
4 TraesCS7B01G290800 chr7D 92.157 51 3 1 265 314 449561922 449561872 2.170000e-08 71.3
5 TraesCS7B01G290800 chr7D 82.022 89 9 7 216 302 556288501 556288584 7.800000e-08 69.4
6 TraesCS7B01G290800 chr7A 91.787 1936 80 31 2159 4079 564609305 564611176 0.000000e+00 2621.0
7 TraesCS7B01G290800 chr7A 93.421 1672 72 13 450 2098 564607631 564609287 0.000000e+00 2444.0
8 TraesCS7B01G290800 chr7A 97.959 147 3 0 4200 4346 564611486 564611632 5.580000e-64 255.0
9 TraesCS7B01G290800 chr7A 96.491 57 2 0 3462 3518 732467621 732467565 1.290000e-15 95.3
10 TraesCS7B01G290800 chr4A 77.483 302 49 13 14 300 527023343 527023640 3.480000e-36 163.0
11 TraesCS7B01G290800 chr2D 73.290 307 64 12 11 303 67422261 67422563 3.580000e-16 97.1
12 TraesCS7B01G290800 chr4B 94.915 59 3 0 3460 3518 465733302 465733244 4.630000e-15 93.5
13 TraesCS7B01G290800 chr4B 80.899 89 12 5 217 303 566588071 566588156 1.010000e-06 65.8
14 TraesCS7B01G290800 chr5D 94.737 57 3 0 3463 3519 9120372 9120316 5.990000e-14 89.8
15 TraesCS7B01G290800 chr6B 94.643 56 3 0 3462 3517 59825825 59825770 2.150000e-13 87.9
16 TraesCS7B01G290800 chr1D 88.571 70 6 1 3462 3531 410795960 410795893 2.790000e-12 84.2
17 TraesCS7B01G290800 chr3D 90.625 64 3 3 3460 3522 126949103 126949042 1.000000e-11 82.4
18 TraesCS7B01G290800 chr3D 80.531 113 14 7 194 303 32383920 32383813 3.600000e-11 80.5
19 TraesCS7B01G290800 chr3B 90.625 64 3 3 3460 3522 181288868 181288807 1.000000e-11 82.4
20 TraesCS7B01G290800 chr2A 84.091 88 10 4 220 306 568396914 568396998 1.000000e-11 82.4
21 TraesCS7B01G290800 chrUn 93.750 48 2 1 254 300 101580777 101580824 2.170000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G290800 chr7B 527035385 527039730 4345 False 8026.000000 8026 100.0000 1 4346 1 chr7B.!!$F1 4345
1 TraesCS7B01G290800 chr7D 498711187 498715345 4158 False 2859.000000 5463 95.5475 343 4346 2 chr7D.!!$F2 4003
2 TraesCS7B01G290800 chr7A 564607631 564611632 4001 False 1773.333333 2621 94.3890 450 4346 3 chr7A.!!$F1 3896

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
134 135 0.179137 GCGGCTGGCCTGTTTAAATC 60.179 55.0 11.69 0.0 34.80 2.17 F
1946 1966 0.038526 AGCTGCTTTGCTTGCACATC 60.039 50.0 0.00 0.0 40.93 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2043 2063 0.463620 TTGGTGAAGCAAAAGTGGCC 59.536 50.0 0.0 0.0 0.0 5.36 R
3771 3852 0.322187 GGTTCGGGGCATAACAGTGT 60.322 55.0 0.0 0.0 0.0 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.050454 GATTCTGATGATGTGAGAGCTTTG 57.950 41.667 0.00 0.00 0.00 2.77
24 25 4.813750 TCTGATGATGTGAGAGCTTTGA 57.186 40.909 0.00 0.00 0.00 2.69
25 26 5.156608 TCTGATGATGTGAGAGCTTTGAA 57.843 39.130 0.00 0.00 0.00 2.69
26 27 5.554070 TCTGATGATGTGAGAGCTTTGAAA 58.446 37.500 0.00 0.00 0.00 2.69
27 28 5.642491 TCTGATGATGTGAGAGCTTTGAAAG 59.358 40.000 0.00 0.00 0.00 2.62
43 44 5.702622 TTGAAAGCATAGAAACGAGATCG 57.297 39.130 0.00 0.00 46.33 3.69
58 59 5.075670 CGAGATCGTTTTTGATGGAGATG 57.924 43.478 0.00 0.00 34.11 2.90
59 60 4.551603 CGAGATCGTTTTTGATGGAGATGC 60.552 45.833 0.00 0.00 34.11 3.91
60 61 4.521146 AGATCGTTTTTGATGGAGATGCT 58.479 39.130 0.00 0.00 0.00 3.79
61 62 4.574013 AGATCGTTTTTGATGGAGATGCTC 59.426 41.667 0.00 0.00 0.00 4.26
71 72 2.217429 GGAGATGCTCCTTCGAGTTC 57.783 55.000 6.23 0.00 46.41 3.01
72 73 1.478510 GGAGATGCTCCTTCGAGTTCA 59.521 52.381 6.23 0.00 46.41 3.18
73 74 2.102252 GGAGATGCTCCTTCGAGTTCAT 59.898 50.000 6.23 0.00 46.41 2.57
74 75 3.431486 GGAGATGCTCCTTCGAGTTCATT 60.431 47.826 6.23 0.00 46.41 2.57
75 76 4.187694 GAGATGCTCCTTCGAGTTCATTT 58.812 43.478 0.00 0.00 38.49 2.32
76 77 3.937706 AGATGCTCCTTCGAGTTCATTTG 59.062 43.478 0.00 0.00 38.49 2.32
77 78 3.126001 TGCTCCTTCGAGTTCATTTGT 57.874 42.857 0.00 0.00 38.49 2.83
78 79 4.265904 TGCTCCTTCGAGTTCATTTGTA 57.734 40.909 0.00 0.00 38.49 2.41
79 80 4.637276 TGCTCCTTCGAGTTCATTTGTAA 58.363 39.130 0.00 0.00 38.49 2.41
80 81 5.245531 TGCTCCTTCGAGTTCATTTGTAAT 58.754 37.500 0.00 0.00 38.49 1.89
81 82 5.705441 TGCTCCTTCGAGTTCATTTGTAATT 59.295 36.000 0.00 0.00 38.49 1.40
82 83 6.876789 TGCTCCTTCGAGTTCATTTGTAATTA 59.123 34.615 0.00 0.00 38.49 1.40
83 84 7.389330 TGCTCCTTCGAGTTCATTTGTAATTAA 59.611 33.333 0.00 0.00 38.49 1.40
84 85 7.905493 GCTCCTTCGAGTTCATTTGTAATTAAG 59.095 37.037 0.00 0.00 38.49 1.85
85 86 7.748847 TCCTTCGAGTTCATTTGTAATTAAGC 58.251 34.615 0.00 0.00 0.00 3.09
86 87 6.682863 CCTTCGAGTTCATTTGTAATTAAGCG 59.317 38.462 0.00 0.00 0.00 4.68
87 88 6.102006 TCGAGTTCATTTGTAATTAAGCGG 57.898 37.500 0.00 0.00 0.00 5.52
88 89 5.870433 TCGAGTTCATTTGTAATTAAGCGGA 59.130 36.000 0.00 0.00 0.00 5.54
89 90 6.537301 TCGAGTTCATTTGTAATTAAGCGGAT 59.463 34.615 0.00 0.00 0.00 4.18
90 91 7.065324 TCGAGTTCATTTGTAATTAAGCGGATT 59.935 33.333 0.00 0.00 0.00 3.01
91 92 7.164171 CGAGTTCATTTGTAATTAAGCGGATTG 59.836 37.037 0.00 0.00 0.00 2.67
92 93 6.751888 AGTTCATTTGTAATTAAGCGGATTGC 59.248 34.615 0.00 0.00 46.98 3.56
104 105 2.472816 GCGGATTGCCATAAAATGTGG 58.527 47.619 0.00 0.00 39.80 4.17
105 106 2.802774 GCGGATTGCCATAAAATGTGGG 60.803 50.000 0.00 0.00 37.22 4.61
106 107 2.224018 CGGATTGCCATAAAATGTGGGG 60.224 50.000 0.00 0.00 37.22 4.96
107 108 2.771372 GGATTGCCATAAAATGTGGGGT 59.229 45.455 0.00 0.00 37.22 4.95
108 109 3.432046 GGATTGCCATAAAATGTGGGGTG 60.432 47.826 0.00 0.00 37.22 4.61
109 110 2.317371 TGCCATAAAATGTGGGGTGT 57.683 45.000 0.00 0.00 37.22 4.16
110 111 1.898472 TGCCATAAAATGTGGGGTGTG 59.102 47.619 0.00 0.00 37.22 3.82
111 112 1.206849 GCCATAAAATGTGGGGTGTGG 59.793 52.381 0.00 0.00 37.22 4.17
112 113 2.813907 CCATAAAATGTGGGGTGTGGA 58.186 47.619 0.00 0.00 32.98 4.02
113 114 3.169099 CCATAAAATGTGGGGTGTGGAA 58.831 45.455 0.00 0.00 32.98 3.53
114 115 3.195396 CCATAAAATGTGGGGTGTGGAAG 59.805 47.826 0.00 0.00 32.98 3.46
115 116 1.715785 AAAATGTGGGGTGTGGAAGG 58.284 50.000 0.00 0.00 0.00 3.46
116 117 0.831711 AAATGTGGGGTGTGGAAGGC 60.832 55.000 0.00 0.00 0.00 4.35
117 118 3.567579 ATGTGGGGTGTGGAAGGCG 62.568 63.158 0.00 0.00 0.00 5.52
132 133 3.361174 GCGGCTGGCCTGTTTAAA 58.639 55.556 11.69 0.00 34.80 1.52
133 134 1.890174 GCGGCTGGCCTGTTTAAAT 59.110 52.632 11.69 0.00 34.80 1.40
134 135 0.179137 GCGGCTGGCCTGTTTAAATC 60.179 55.000 11.69 0.00 34.80 2.17
135 136 1.173043 CGGCTGGCCTGTTTAAATCA 58.827 50.000 11.69 0.00 0.00 2.57
136 137 1.133025 CGGCTGGCCTGTTTAAATCAG 59.867 52.381 11.69 9.51 0.00 2.90
137 138 2.446435 GGCTGGCCTGTTTAAATCAGA 58.554 47.619 11.69 0.99 35.20 3.27
138 139 2.164422 GGCTGGCCTGTTTAAATCAGAC 59.836 50.000 11.69 7.21 35.20 3.51
139 140 2.819608 GCTGGCCTGTTTAAATCAGACA 59.180 45.455 11.69 12.83 35.20 3.41
140 141 3.445096 GCTGGCCTGTTTAAATCAGACAT 59.555 43.478 11.69 0.00 35.20 3.06
141 142 4.676196 GCTGGCCTGTTTAAATCAGACATG 60.676 45.833 11.69 0.00 35.20 3.21
142 143 3.763360 TGGCCTGTTTAAATCAGACATGG 59.237 43.478 3.32 4.72 35.20 3.66
143 144 4.016444 GGCCTGTTTAAATCAGACATGGA 58.984 43.478 15.20 0.00 35.20 3.41
144 145 4.646492 GGCCTGTTTAAATCAGACATGGAT 59.354 41.667 15.20 0.00 35.20 3.41
145 146 5.827797 GGCCTGTTTAAATCAGACATGGATA 59.172 40.000 15.20 0.00 35.20 2.59
146 147 6.016777 GGCCTGTTTAAATCAGACATGGATAG 60.017 42.308 15.20 2.26 35.20 2.08
147 148 6.767902 GCCTGTTTAAATCAGACATGGATAGA 59.232 38.462 15.20 0.00 35.20 1.98
148 149 7.041508 GCCTGTTTAAATCAGACATGGATAGAG 60.042 40.741 15.20 0.00 35.20 2.43
149 150 7.989741 CCTGTTTAAATCAGACATGGATAGAGT 59.010 37.037 15.20 0.00 35.20 3.24
150 151 8.948631 TGTTTAAATCAGACATGGATAGAGTC 57.051 34.615 0.00 0.00 0.00 3.36
151 152 8.762645 TGTTTAAATCAGACATGGATAGAGTCT 58.237 33.333 0.00 0.00 42.97 3.24
152 153 9.606631 GTTTAAATCAGACATGGATAGAGTCTT 57.393 33.333 0.00 0.00 40.42 3.01
155 156 7.537596 AATCAGACATGGATAGAGTCTTAGG 57.462 40.000 0.00 0.00 40.42 2.69
156 157 5.389520 TCAGACATGGATAGAGTCTTAGGG 58.610 45.833 0.00 0.00 40.42 3.53
157 158 4.526262 CAGACATGGATAGAGTCTTAGGGG 59.474 50.000 0.00 0.00 40.42 4.79
158 159 3.243724 ACATGGATAGAGTCTTAGGGGC 58.756 50.000 0.00 0.00 0.00 5.80
159 160 2.400467 TGGATAGAGTCTTAGGGGCC 57.600 55.000 0.00 0.00 0.00 5.80
160 161 1.578703 TGGATAGAGTCTTAGGGGCCA 59.421 52.381 4.39 0.00 0.00 5.36
161 162 2.182312 TGGATAGAGTCTTAGGGGCCAT 59.818 50.000 4.39 0.00 0.00 4.40
162 163 3.404769 TGGATAGAGTCTTAGGGGCCATA 59.595 47.826 4.39 0.00 0.00 2.74
163 164 4.027437 GGATAGAGTCTTAGGGGCCATAG 58.973 52.174 4.39 0.00 0.00 2.23
164 165 4.264442 GGATAGAGTCTTAGGGGCCATAGA 60.264 50.000 4.39 1.09 0.00 1.98
165 166 3.252554 AGAGTCTTAGGGGCCATAGAG 57.747 52.381 4.39 3.49 0.00 2.43
166 167 2.158234 AGAGTCTTAGGGGCCATAGAGG 60.158 54.545 4.39 0.00 41.84 3.69
167 168 1.581149 AGTCTTAGGGGCCATAGAGGT 59.419 52.381 4.39 0.00 40.61 3.85
168 169 1.972075 GTCTTAGGGGCCATAGAGGTC 59.028 57.143 4.39 0.00 43.09 3.85
169 170 0.969894 CTTAGGGGCCATAGAGGTCG 59.030 60.000 4.39 0.00 45.54 4.79
170 171 0.471211 TTAGGGGCCATAGAGGTCGG 60.471 60.000 4.39 0.00 45.54 4.79
171 172 2.382023 TAGGGGCCATAGAGGTCGGG 62.382 65.000 4.39 0.00 45.54 5.14
172 173 3.942439 GGGCCATAGAGGTCGGGC 61.942 72.222 4.39 0.00 45.54 6.13
174 175 3.151906 GCCATAGAGGTCGGGCAT 58.848 61.111 0.00 0.00 45.70 4.40
175 176 1.302033 GCCATAGAGGTCGGGCATG 60.302 63.158 0.00 0.00 45.70 4.06
176 177 1.758440 GCCATAGAGGTCGGGCATGA 61.758 60.000 0.00 0.00 45.70 3.07
177 178 0.979665 CCATAGAGGTCGGGCATGAT 59.020 55.000 0.00 0.00 0.00 2.45
178 179 1.338484 CCATAGAGGTCGGGCATGATG 60.338 57.143 0.00 0.00 0.00 3.07
179 180 0.322975 ATAGAGGTCGGGCATGATGC 59.677 55.000 9.33 9.33 44.08 3.91
180 181 2.087462 TAGAGGTCGGGCATGATGCG 62.087 60.000 11.75 0.00 46.21 4.73
181 182 3.445518 GAGGTCGGGCATGATGCGA 62.446 63.158 11.75 0.76 46.21 5.10
182 183 2.969238 GGTCGGGCATGATGCGAG 60.969 66.667 11.75 7.83 46.21 5.03
183 184 2.969238 GTCGGGCATGATGCGAGG 60.969 66.667 11.75 3.05 46.21 4.63
184 185 4.240103 TCGGGCATGATGCGAGGG 62.240 66.667 11.75 0.48 46.21 4.30
195 196 2.892425 GCGAGGGCAATCCGAGTG 60.892 66.667 0.00 0.00 41.52 3.51
196 197 2.892640 CGAGGGCAATCCGAGTGA 59.107 61.111 0.00 0.00 41.52 3.41
197 198 1.218047 CGAGGGCAATCCGAGTGAA 59.782 57.895 0.00 0.00 41.52 3.18
198 199 0.807667 CGAGGGCAATCCGAGTGAAG 60.808 60.000 0.00 0.00 41.52 3.02
199 200 0.250513 GAGGGCAATCCGAGTGAAGT 59.749 55.000 0.00 0.00 41.52 3.01
200 201 0.693049 AGGGCAATCCGAGTGAAGTT 59.307 50.000 0.00 0.00 41.52 2.66
201 202 0.804989 GGGCAATCCGAGTGAAGTTG 59.195 55.000 0.00 0.00 0.00 3.16
202 203 0.804989 GGCAATCCGAGTGAAGTTGG 59.195 55.000 0.00 0.00 0.00 3.77
203 204 0.804989 GCAATCCGAGTGAAGTTGGG 59.195 55.000 0.00 0.00 0.00 4.12
204 205 1.882352 GCAATCCGAGTGAAGTTGGGT 60.882 52.381 0.00 0.00 0.00 4.51
205 206 2.504367 CAATCCGAGTGAAGTTGGGTT 58.496 47.619 0.00 0.00 0.00 4.11
206 207 3.670625 CAATCCGAGTGAAGTTGGGTTA 58.329 45.455 0.00 0.00 0.00 2.85
207 208 4.261801 CAATCCGAGTGAAGTTGGGTTAT 58.738 43.478 0.00 0.00 0.00 1.89
208 209 5.424757 CAATCCGAGTGAAGTTGGGTTATA 58.575 41.667 0.00 0.00 0.00 0.98
209 210 5.888982 ATCCGAGTGAAGTTGGGTTATAT 57.111 39.130 0.00 0.00 0.00 0.86
210 211 6.989155 ATCCGAGTGAAGTTGGGTTATATA 57.011 37.500 0.00 0.00 0.00 0.86
211 212 6.795144 TCCGAGTGAAGTTGGGTTATATAA 57.205 37.500 0.00 0.00 0.00 0.98
212 213 6.576185 TCCGAGTGAAGTTGGGTTATATAAC 58.424 40.000 15.98 15.98 35.50 1.89
231 232 6.730960 ATAACCTTATGTAACACCAACGTG 57.269 37.500 0.00 0.00 46.11 4.49
232 233 4.339872 ACCTTATGTAACACCAACGTGA 57.660 40.909 0.00 0.00 43.14 4.35
233 234 4.706035 ACCTTATGTAACACCAACGTGAA 58.294 39.130 0.00 0.00 43.14 3.18
234 235 4.753107 ACCTTATGTAACACCAACGTGAAG 59.247 41.667 0.00 0.00 43.14 3.02
235 236 4.153475 CCTTATGTAACACCAACGTGAAGG 59.847 45.833 0.00 0.00 43.14 3.46
236 237 1.956297 TGTAACACCAACGTGAAGGG 58.044 50.000 6.86 1.24 43.14 3.95
237 238 1.485480 TGTAACACCAACGTGAAGGGA 59.515 47.619 6.86 0.00 43.14 4.20
238 239 2.105134 TGTAACACCAACGTGAAGGGAT 59.895 45.455 6.86 0.00 43.14 3.85
239 240 1.892209 AACACCAACGTGAAGGGATC 58.108 50.000 6.86 0.00 43.14 3.36
240 241 1.056660 ACACCAACGTGAAGGGATCT 58.943 50.000 6.86 0.00 43.14 2.75
241 242 1.420138 ACACCAACGTGAAGGGATCTT 59.580 47.619 6.86 0.00 43.14 2.40
257 258 9.571816 GAAGGGATCTTCTAATCATCATCTTTT 57.428 33.333 0.00 0.00 44.43 2.27
258 259 9.571816 AAGGGATCTTCTAATCATCATCTTTTC 57.428 33.333 0.00 0.00 0.00 2.29
259 260 8.947305 AGGGATCTTCTAATCATCATCTTTTCT 58.053 33.333 0.00 0.00 0.00 2.52
260 261 9.571816 GGGATCTTCTAATCATCATCTTTTCTT 57.428 33.333 0.00 0.00 0.00 2.52
283 284 9.603298 TCTTTTAATATATAGTACGCACACTCG 57.397 33.333 0.00 0.00 0.00 4.18
284 285 9.390795 CTTTTAATATATAGTACGCACACTCGT 57.609 33.333 0.00 0.00 45.49 4.18
285 286 8.718047 TTTAATATATAGTACGCACACTCGTG 57.282 34.615 0.00 0.00 46.56 4.35
297 298 4.926860 CACACTCGTGCATATTTGAGAA 57.073 40.909 0.00 0.00 36.06 2.87
298 299 5.281693 CACACTCGTGCATATTTGAGAAA 57.718 39.130 0.00 0.00 36.06 2.52
299 300 5.688823 CACACTCGTGCATATTTGAGAAAA 58.311 37.500 0.00 0.00 36.06 2.29
300 301 6.142139 CACACTCGTGCATATTTGAGAAAAA 58.858 36.000 0.00 0.00 36.06 1.94
331 332 6.926280 TTTATTGATTGAAACATCACGTGC 57.074 33.333 11.67 0.00 0.00 5.34
332 333 3.978718 TTGATTGAAACATCACGTGCA 57.021 38.095 11.67 0.00 0.00 4.57
333 334 3.978718 TGATTGAAACATCACGTGCAA 57.021 38.095 11.67 8.59 0.00 4.08
334 335 4.298744 TGATTGAAACATCACGTGCAAA 57.701 36.364 11.67 0.00 0.00 3.68
335 336 4.676546 TGATTGAAACATCACGTGCAAAA 58.323 34.783 11.67 0.00 0.00 2.44
336 337 5.105063 TGATTGAAACATCACGTGCAAAAA 58.895 33.333 11.67 0.00 0.00 1.94
399 400 3.572255 ACAACAAATTCCCATAGCAACGT 59.428 39.130 0.00 0.00 0.00 3.99
439 440 6.138761 GGCAGAAAATAGCAGAATAATGACG 58.861 40.000 0.00 0.00 0.00 4.35
440 441 6.238484 GGCAGAAAATAGCAGAATAATGACGT 60.238 38.462 0.00 0.00 0.00 4.34
444 445 7.439655 AGAAAATAGCAGAATAATGACGTCTCC 59.560 37.037 17.92 0.00 0.00 3.71
570 572 2.114670 CCATTAGCTGCCCACACGG 61.115 63.158 0.00 0.00 0.00 4.94
841 844 1.154814 GCTAAAGAGGTAGCGGCAGC 61.155 60.000 0.00 0.00 45.58 5.25
885 888 4.400776 CGTCGTCGTCGTCGTCGT 62.401 66.667 18.87 0.00 45.27 4.34
887 890 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
890 893 4.108437 TCGTCGTCGTCGTCGTCG 62.108 66.667 20.39 20.39 45.27 5.12
1158 1169 2.670592 TTCGACGTCGCCTCCTCA 60.671 61.111 32.19 11.25 39.60 3.86
1296 1307 3.827898 CACTCGGGCCTCCTCGTC 61.828 72.222 0.84 0.00 0.00 4.20
1698 1718 3.447025 GAGCCGCGCCTCATACCTT 62.447 63.158 12.90 0.00 0.00 3.50
1724 1744 3.453222 TGCTCACGTGCAAAATTCG 57.547 47.368 11.67 0.00 40.29 3.34
1761 1781 4.001618 TCAATGATCAGACACCGTTTCA 57.998 40.909 0.09 0.00 0.00 2.69
1765 1785 3.588955 TGATCAGACACCGTTTCATCAG 58.411 45.455 0.00 0.00 0.00 2.90
1772 1792 4.027572 ACACCGTTTCATCAGTTGTTTG 57.972 40.909 0.00 0.00 0.00 2.93
1773 1793 2.788786 CACCGTTTCATCAGTTGTTTGC 59.211 45.455 0.00 0.00 0.00 3.68
1789 1809 2.809696 GTTTGCCAAGAATTTGCATGCT 59.190 40.909 20.33 0.00 32.79 3.79
1790 1810 3.957591 TTGCCAAGAATTTGCATGCTA 57.042 38.095 20.33 8.83 32.79 3.49
1840 1860 1.100510 TATAGTTCGAGCGTGCCACT 58.899 50.000 0.00 0.00 0.00 4.00
1843 1863 2.355837 TTCGAGCGTGCCACTGTC 60.356 61.111 0.00 0.00 0.00 3.51
1862 1882 0.739112 CCAGCTTTCAGAGGCGTCTC 60.739 60.000 9.58 9.58 40.25 3.36
1943 1963 1.372623 GGAGCTGCTTTGCTTGCAC 60.373 57.895 2.53 0.00 44.17 4.57
1946 1966 0.038526 AGCTGCTTTGCTTGCACATC 60.039 50.000 0.00 0.00 40.93 3.06
1960 1980 1.467543 GCACATCGTAAGCGTCAGAGA 60.468 52.381 0.00 0.00 39.49 3.10
2044 2064 1.373435 TGGAACACAAGCTACCGGG 59.627 57.895 6.32 0.00 0.00 5.73
2073 2097 0.963962 CTTCACCAAGGCACTGCATT 59.036 50.000 2.82 0.00 40.86 3.56
2098 2126 4.510038 AATTACCTCTGCAAGCAACAAG 57.490 40.909 0.00 0.00 0.00 3.16
2099 2127 1.238439 TACCTCTGCAAGCAACAAGC 58.762 50.000 0.00 0.00 46.19 4.01
2125 2153 8.415553 CCAACAATGATCAGCCAAAGATAATTA 58.584 33.333 0.09 0.00 27.81 1.40
2126 2154 9.459640 CAACAATGATCAGCCAAAGATAATTAG 57.540 33.333 0.09 0.00 27.81 1.73
2128 2156 8.844244 ACAATGATCAGCCAAAGATAATTAGAC 58.156 33.333 0.09 0.00 27.81 2.59
2129 2157 9.064706 CAATGATCAGCCAAAGATAATTAGACT 57.935 33.333 0.09 0.00 27.81 3.24
2130 2158 9.638176 AATGATCAGCCAAAGATAATTAGACTT 57.362 29.630 0.09 0.00 27.15 3.01
2157 2185 0.168128 GGCTGAACATTACACCGTGC 59.832 55.000 0.00 0.00 0.00 5.34
2198 2246 7.698970 GTGTAGTTACTGAAGCTATTCTCTGAC 59.301 40.741 0.00 0.00 36.33 3.51
2199 2247 6.842437 AGTTACTGAAGCTATTCTCTGACA 57.158 37.500 0.00 0.00 36.33 3.58
2200 2248 7.416964 AGTTACTGAAGCTATTCTCTGACAT 57.583 36.000 0.00 0.00 36.33 3.06
2201 2249 7.264221 AGTTACTGAAGCTATTCTCTGACATG 58.736 38.462 0.00 0.00 36.33 3.21
2202 2250 5.021033 ACTGAAGCTATTCTCTGACATGG 57.979 43.478 0.00 0.00 36.33 3.66
2203 2251 4.469227 ACTGAAGCTATTCTCTGACATGGT 59.531 41.667 0.00 0.00 36.33 3.55
2204 2252 5.016051 TGAAGCTATTCTCTGACATGGTC 57.984 43.478 0.00 0.00 36.33 4.02
2205 2253 4.713814 TGAAGCTATTCTCTGACATGGTCT 59.286 41.667 0.00 0.00 36.33 3.85
2206 2254 4.669206 AGCTATTCTCTGACATGGTCTG 57.331 45.455 0.00 0.00 33.15 3.51
2207 2255 4.285020 AGCTATTCTCTGACATGGTCTGA 58.715 43.478 0.00 5.94 37.99 3.27
2215 2263 3.490759 CATGGTCTGACGCCGTGC 61.491 66.667 0.00 0.00 36.38 5.34
2229 2277 1.661197 CGTGCCGTGCTTTGCATTT 60.661 52.632 0.00 0.00 41.91 2.32
2394 2442 0.541530 TCAGTCAGTCAGGCTCTGCT 60.542 55.000 0.00 0.00 33.48 4.24
2437 2485 3.202906 GAACAAGTGCACTCAGGTGTTA 58.797 45.455 26.55 0.00 44.65 2.41
2579 2627 2.009774 CGGAAAACCATCAGCTTCGAT 58.990 47.619 0.00 0.00 0.00 3.59
2740 2788 5.679734 AGTAAGTCACATGTTCAGCAAAG 57.320 39.130 0.00 0.00 0.00 2.77
2757 2805 3.118542 CAAAGCTGCAACCAACTTCTTC 58.881 45.455 1.02 0.00 0.00 2.87
2764 2814 4.754322 TGCAACCAACTTCTTCCTTTTTC 58.246 39.130 0.00 0.00 0.00 2.29
3022 3072 2.098117 GCTGCTTTGACAGTTTCAGTGT 59.902 45.455 0.00 0.00 39.96 3.55
3052 3102 0.949105 AACAGTTTCAGCGCCTACCG 60.949 55.000 2.29 0.00 40.75 4.02
3061 3111 0.957362 AGCGCCTACCGTATTAGGTC 59.043 55.000 2.29 0.00 44.68 3.85
3062 3112 0.957362 GCGCCTACCGTATTAGGTCT 59.043 55.000 0.00 0.00 44.68 3.85
3063 3113 1.335689 GCGCCTACCGTATTAGGTCTG 60.336 57.143 0.00 0.00 44.68 3.51
3064 3114 1.268899 CGCCTACCGTATTAGGTCTGG 59.731 57.143 0.00 0.00 44.68 3.86
3065 3115 1.617357 GCCTACCGTATTAGGTCTGGG 59.383 57.143 9.14 4.97 44.68 4.45
3132 3184 1.749063 GTGGTGTTTATAGGCTTGCCC 59.251 52.381 8.17 0.00 0.00 5.36
3133 3185 1.021968 GGTGTTTATAGGCTTGCCCG 58.978 55.000 8.17 0.00 39.21 6.13
3143 3195 2.275380 GCTTGCCCGGGTTTGATGT 61.275 57.895 24.63 0.00 0.00 3.06
3148 3200 1.288752 CCCGGGTTTGATGTTGTGC 59.711 57.895 14.18 0.00 0.00 4.57
3158 3222 3.961480 TGATGTTGTGCTAGCAGTACT 57.039 42.857 20.03 8.86 31.77 2.73
3209 3273 1.813178 TCTCCAAGTACAGCTCTGTCG 59.187 52.381 5.72 0.00 43.74 4.35
3245 3309 4.558470 CAGCGTGCTTAAACCATTGTAATG 59.442 41.667 0.00 0.00 36.17 1.90
3351 3424 3.364565 GCTTTGCATTGTTTTCAGCCATG 60.365 43.478 0.00 0.00 0.00 3.66
3392 3468 9.939047 GTACTAATAATACTGATTTCGCATTCG 57.061 33.333 0.00 0.00 0.00 3.34
3393 3469 7.510630 ACTAATAATACTGATTTCGCATTCGC 58.489 34.615 0.00 0.00 35.26 4.70
3394 3470 5.922739 ATAATACTGATTTCGCATTCGCA 57.077 34.783 0.00 0.00 38.40 5.10
3395 3471 4.818534 AATACTGATTTCGCATTCGCAT 57.181 36.364 0.00 0.00 38.40 4.73
3396 3472 4.818534 ATACTGATTTCGCATTCGCATT 57.181 36.364 0.00 0.00 38.40 3.56
3397 3473 3.492421 ACTGATTTCGCATTCGCATTT 57.508 38.095 0.00 0.00 38.40 2.32
3457 3533 9.578576 AATTATATACTACTACCTCCGTTCACA 57.421 33.333 0.00 0.00 0.00 3.58
3522 3598 6.527057 TTTAGGAACAGAGGTAGTAGCTTC 57.473 41.667 2.85 0.00 0.00 3.86
3523 3599 4.048970 AGGAACAGAGGTAGTAGCTTCA 57.951 45.455 2.85 0.00 0.00 3.02
3533 3609 6.706716 AGAGGTAGTAGCTTCAAACAGTTTTC 59.293 38.462 2.85 0.00 0.00 2.29
3576 3652 3.469739 TGTTGAAGAAGTCGTTAACCCC 58.530 45.455 0.00 0.00 0.00 4.95
3577 3653 3.118334 TGTTGAAGAAGTCGTTAACCCCA 60.118 43.478 0.00 0.00 0.00 4.96
3583 3659 4.324267 AGAAGTCGTTAACCCCAATTCAG 58.676 43.478 0.00 0.00 0.00 3.02
3606 3682 3.811083 TCAGCCTTCGGAAACAGTTTTA 58.189 40.909 0.00 0.00 0.00 1.52
3757 3838 5.981174 ACCAAGAATTTGAATAATGGGCAG 58.019 37.500 0.00 0.00 36.36 4.85
3786 3867 0.036388 AGACACACTGTTATGCCCCG 60.036 55.000 0.00 0.00 0.00 5.73
3819 3900 7.124052 ACCTACTCCAGAGCTTTAGTGTATAA 58.876 38.462 0.00 0.00 0.00 0.98
3829 3910 8.763601 AGAGCTTTAGTGTATAAAGGAATGACT 58.236 33.333 8.89 0.00 35.64 3.41
3835 3916 9.590451 TTAGTGTATAAAGGAATGACTAAACCG 57.410 33.333 0.00 0.00 0.00 4.44
3836 3917 7.844009 AGTGTATAAAGGAATGACTAAACCGA 58.156 34.615 0.00 0.00 0.00 4.69
3837 3918 8.316214 AGTGTATAAAGGAATGACTAAACCGAA 58.684 33.333 0.00 0.00 0.00 4.30
3838 3919 9.106070 GTGTATAAAGGAATGACTAAACCGAAT 57.894 33.333 0.00 0.00 0.00 3.34
3847 3928 3.452990 TGACTAAACCGAATAGCATCCCA 59.547 43.478 0.00 0.00 0.00 4.37
3855 3936 2.547855 CGAATAGCATCCCATTCACCGA 60.548 50.000 0.00 0.00 31.86 4.69
3860 3941 1.134220 GCATCCCATTCACCGACCTAA 60.134 52.381 0.00 0.00 0.00 2.69
4040 4121 7.039434 TGTCCATGTTGCATAACCTGAAAAATA 60.039 33.333 0.00 0.00 35.29 1.40
4048 4129 8.402798 TGCATAACCTGAAAAATAACAAGAGA 57.597 30.769 0.00 0.00 0.00 3.10
4135 4255 7.882791 AGTGGTAATATCAAGTGTGACAAATCA 59.117 33.333 0.00 0.00 36.31 2.57
4137 4257 9.072375 TGGTAATATCAAGTGTGACAAATCAAA 57.928 29.630 0.00 0.00 36.31 2.69
4153 4273 9.121517 GACAAATCAAATGTGATGAAACTACTG 57.878 33.333 0.00 0.00 44.02 2.74
4155 4275 9.121517 CAAATCAAATGTGATGAAACTACTGAC 57.878 33.333 0.00 0.00 44.02 3.51
4157 4277 7.984422 TCAAATGTGATGAAACTACTGACAT 57.016 32.000 0.00 0.00 0.00 3.06
4159 4279 9.154847 TCAAATGTGATGAAACTACTGACATAG 57.845 33.333 0.00 0.00 0.00 2.23
4160 4280 7.545362 AATGTGATGAAACTACTGACATAGC 57.455 36.000 0.00 0.00 0.00 2.97
4161 4281 6.036577 TGTGATGAAACTACTGACATAGCA 57.963 37.500 0.00 0.00 0.00 3.49
4162 4282 6.463360 TGTGATGAAACTACTGACATAGCAA 58.537 36.000 0.00 0.00 0.00 3.91
4171 4304 4.818534 ACTGACATAGCAACAACAACAG 57.181 40.909 0.00 0.00 0.00 3.16
4294 4589 6.918022 GGTTTCTCAATCAAGTTTTGTACCTG 59.082 38.462 0.00 0.00 0.00 4.00
4332 4627 8.985315 ATGTCACTGAAACATATCCAATGTAT 57.015 30.769 0.00 0.00 35.62 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.816258 TCAAAGCTCTCACATCATCAGAATC 59.184 40.000 0.00 0.00 0.00 2.52
2 3 5.156608 TCAAAGCTCTCACATCATCAGAA 57.843 39.130 0.00 0.00 0.00 3.02
3 4 4.813750 TCAAAGCTCTCACATCATCAGA 57.186 40.909 0.00 0.00 0.00 3.27
4 5 5.870444 CTTTCAAAGCTCTCACATCATCAG 58.130 41.667 0.00 0.00 0.00 2.90
17 18 9.250370 CGATCTCGTTTCTATGCTTTCAAAGCT 62.250 40.741 22.58 10.87 43.85 3.74
18 19 7.205359 CGATCTCGTTTCTATGCTTTCAAAGC 61.205 42.308 15.71 15.71 43.81 3.51
19 20 6.181255 CGATCTCGTTTCTATGCTTTCAAAG 58.819 40.000 0.00 0.00 34.11 2.77
20 21 6.094739 CGATCTCGTTTCTATGCTTTCAAA 57.905 37.500 0.00 0.00 34.11 2.69
21 22 5.702622 CGATCTCGTTTCTATGCTTTCAA 57.297 39.130 0.00 0.00 34.11 2.69
36 37 4.551603 GCATCTCCATCAAAAACGATCTCG 60.552 45.833 0.00 0.00 46.33 4.04
37 38 4.574013 AGCATCTCCATCAAAAACGATCTC 59.426 41.667 0.00 0.00 0.00 2.75
38 39 4.521146 AGCATCTCCATCAAAAACGATCT 58.479 39.130 0.00 0.00 0.00 2.75
39 40 4.842029 GAGCATCTCCATCAAAAACGATC 58.158 43.478 0.00 0.00 0.00 3.69
40 41 4.889832 GAGCATCTCCATCAAAAACGAT 57.110 40.909 0.00 0.00 0.00 3.73
53 54 2.949451 TGAACTCGAAGGAGCATCTC 57.051 50.000 0.00 0.00 44.48 2.75
54 55 3.902881 AATGAACTCGAAGGAGCATCT 57.097 42.857 0.00 0.00 44.48 2.90
55 56 3.686726 ACAAATGAACTCGAAGGAGCATC 59.313 43.478 0.00 0.00 44.48 3.91
56 57 3.679389 ACAAATGAACTCGAAGGAGCAT 58.321 40.909 0.00 0.00 44.48 3.79
57 58 3.126001 ACAAATGAACTCGAAGGAGCA 57.874 42.857 0.00 0.00 44.48 4.26
58 59 5.803020 ATTACAAATGAACTCGAAGGAGC 57.197 39.130 0.00 0.00 44.48 4.70
59 60 7.905493 GCTTAATTACAAATGAACTCGAAGGAG 59.095 37.037 0.00 0.00 46.13 3.69
60 61 7.412563 CGCTTAATTACAAATGAACTCGAAGGA 60.413 37.037 0.00 0.00 0.00 3.36
61 62 6.682863 CGCTTAATTACAAATGAACTCGAAGG 59.317 38.462 0.00 0.00 0.00 3.46
62 63 6.682863 CCGCTTAATTACAAATGAACTCGAAG 59.317 38.462 0.00 0.00 0.00 3.79
63 64 6.369340 TCCGCTTAATTACAAATGAACTCGAA 59.631 34.615 0.00 0.00 0.00 3.71
64 65 5.870433 TCCGCTTAATTACAAATGAACTCGA 59.130 36.000 0.00 0.00 0.00 4.04
65 66 6.102006 TCCGCTTAATTACAAATGAACTCG 57.898 37.500 0.00 0.00 0.00 4.18
66 67 7.044052 GCAATCCGCTTAATTACAAATGAACTC 60.044 37.037 0.00 0.00 37.77 3.01
67 68 6.751888 GCAATCCGCTTAATTACAAATGAACT 59.248 34.615 0.00 0.00 37.77 3.01
68 69 6.019881 GGCAATCCGCTTAATTACAAATGAAC 60.020 38.462 0.00 0.00 41.91 3.18
69 70 6.039616 GGCAATCCGCTTAATTACAAATGAA 58.960 36.000 0.00 0.00 41.91 2.57
70 71 5.126222 TGGCAATCCGCTTAATTACAAATGA 59.874 36.000 0.00 0.00 41.91 2.57
71 72 5.347342 TGGCAATCCGCTTAATTACAAATG 58.653 37.500 0.00 0.00 41.91 2.32
72 73 5.590530 TGGCAATCCGCTTAATTACAAAT 57.409 34.783 0.00 0.00 41.91 2.32
73 74 5.590530 ATGGCAATCCGCTTAATTACAAA 57.409 34.783 0.00 0.00 41.91 2.83
74 75 6.701145 TTATGGCAATCCGCTTAATTACAA 57.299 33.333 0.00 0.00 41.91 2.41
75 76 6.701145 TTTATGGCAATCCGCTTAATTACA 57.299 33.333 0.00 0.00 41.91 2.41
76 77 7.651704 ACATTTTATGGCAATCCGCTTAATTAC 59.348 33.333 0.00 0.00 41.91 1.89
77 78 7.651304 CACATTTTATGGCAATCCGCTTAATTA 59.349 33.333 0.00 0.00 41.91 1.40
78 79 6.479660 CACATTTTATGGCAATCCGCTTAATT 59.520 34.615 0.00 0.00 41.91 1.40
79 80 5.984926 CACATTTTATGGCAATCCGCTTAAT 59.015 36.000 0.00 0.00 41.91 1.40
80 81 5.347342 CACATTTTATGGCAATCCGCTTAA 58.653 37.500 0.00 0.00 41.91 1.85
81 82 4.202101 CCACATTTTATGGCAATCCGCTTA 60.202 41.667 0.00 0.00 41.91 3.09
82 83 3.430651 CCACATTTTATGGCAATCCGCTT 60.431 43.478 0.00 0.00 41.91 4.68
83 84 2.101249 CCACATTTTATGGCAATCCGCT 59.899 45.455 0.00 0.00 41.91 5.52
84 85 2.472816 CCACATTTTATGGCAATCCGC 58.527 47.619 0.00 0.00 41.28 5.54
85 86 2.224018 CCCCACATTTTATGGCAATCCG 60.224 50.000 0.00 0.00 35.74 4.18
86 87 2.771372 ACCCCACATTTTATGGCAATCC 59.229 45.455 0.00 0.00 35.74 3.01
87 88 3.197549 ACACCCCACATTTTATGGCAATC 59.802 43.478 0.00 0.00 35.74 2.67
88 89 3.055240 CACACCCCACATTTTATGGCAAT 60.055 43.478 0.00 0.00 35.74 3.56
89 90 2.301296 CACACCCCACATTTTATGGCAA 59.699 45.455 0.00 0.00 35.74 4.52
90 91 1.898472 CACACCCCACATTTTATGGCA 59.102 47.619 0.00 0.00 35.74 4.92
91 92 1.206849 CCACACCCCACATTTTATGGC 59.793 52.381 0.00 0.00 35.74 4.40
92 93 2.813907 TCCACACCCCACATTTTATGG 58.186 47.619 0.00 0.00 36.94 2.74
93 94 3.195396 CCTTCCACACCCCACATTTTATG 59.805 47.826 0.00 0.00 0.00 1.90
94 95 3.440127 CCTTCCACACCCCACATTTTAT 58.560 45.455 0.00 0.00 0.00 1.40
95 96 2.883026 CCTTCCACACCCCACATTTTA 58.117 47.619 0.00 0.00 0.00 1.52
96 97 1.715785 CCTTCCACACCCCACATTTT 58.284 50.000 0.00 0.00 0.00 1.82
97 98 0.831711 GCCTTCCACACCCCACATTT 60.832 55.000 0.00 0.00 0.00 2.32
98 99 1.228862 GCCTTCCACACCCCACATT 60.229 57.895 0.00 0.00 0.00 2.71
99 100 2.440599 GCCTTCCACACCCCACAT 59.559 61.111 0.00 0.00 0.00 3.21
100 101 4.263572 CGCCTTCCACACCCCACA 62.264 66.667 0.00 0.00 0.00 4.17
115 116 0.179137 GATTTAAACAGGCCAGCCGC 60.179 55.000 5.01 0.00 41.95 6.53
116 117 1.133025 CTGATTTAAACAGGCCAGCCG 59.867 52.381 5.01 0.99 41.95 5.52
117 118 2.164422 GTCTGATTTAAACAGGCCAGCC 59.836 50.000 5.01 0.00 34.42 4.85
118 119 2.819608 TGTCTGATTTAAACAGGCCAGC 59.180 45.455 5.01 0.00 38.95 4.85
119 120 4.142315 CCATGTCTGATTTAAACAGGCCAG 60.142 45.833 5.01 0.00 38.95 4.85
120 121 3.763360 CCATGTCTGATTTAAACAGGCCA 59.237 43.478 5.01 12.57 38.95 5.36
121 122 4.016444 TCCATGTCTGATTTAAACAGGCC 58.984 43.478 15.23 0.00 38.95 5.19
122 123 5.841957 ATCCATGTCTGATTTAAACAGGC 57.158 39.130 12.57 12.57 39.96 4.85
123 124 7.989741 ACTCTATCCATGTCTGATTTAAACAGG 59.010 37.037 14.02 1.31 36.22 4.00
124 125 8.954950 ACTCTATCCATGTCTGATTTAAACAG 57.045 34.615 9.98 9.98 36.80 3.16
125 126 8.762645 AGACTCTATCCATGTCTGATTTAAACA 58.237 33.333 0.00 0.00 39.29 2.83
126 127 9.606631 AAGACTCTATCCATGTCTGATTTAAAC 57.393 33.333 0.00 0.00 40.44 2.01
129 130 9.083422 CCTAAGACTCTATCCATGTCTGATTTA 57.917 37.037 0.00 0.00 40.44 1.40
130 131 7.016072 CCCTAAGACTCTATCCATGTCTGATTT 59.984 40.741 0.00 0.00 40.44 2.17
131 132 6.496565 CCCTAAGACTCTATCCATGTCTGATT 59.503 42.308 0.00 0.00 40.44 2.57
132 133 6.015918 CCCTAAGACTCTATCCATGTCTGAT 58.984 44.000 0.00 0.00 40.44 2.90
133 134 5.389520 CCCTAAGACTCTATCCATGTCTGA 58.610 45.833 0.00 0.00 40.44 3.27
134 135 4.526262 CCCCTAAGACTCTATCCATGTCTG 59.474 50.000 0.00 0.00 40.44 3.51
135 136 4.746466 CCCCTAAGACTCTATCCATGTCT 58.254 47.826 0.00 0.00 42.12 3.41
136 137 3.259625 GCCCCTAAGACTCTATCCATGTC 59.740 52.174 0.00 0.00 0.00 3.06
137 138 3.243724 GCCCCTAAGACTCTATCCATGT 58.756 50.000 0.00 0.00 0.00 3.21
138 139 2.569404 GGCCCCTAAGACTCTATCCATG 59.431 54.545 0.00 0.00 0.00 3.66
139 140 2.182312 TGGCCCCTAAGACTCTATCCAT 59.818 50.000 0.00 0.00 0.00 3.41
140 141 1.578703 TGGCCCCTAAGACTCTATCCA 59.421 52.381 0.00 0.00 0.00 3.41
141 142 2.400467 TGGCCCCTAAGACTCTATCC 57.600 55.000 0.00 0.00 0.00 2.59
142 143 4.936802 TCTATGGCCCCTAAGACTCTATC 58.063 47.826 0.00 0.00 0.00 2.08
143 144 4.264623 CCTCTATGGCCCCTAAGACTCTAT 60.265 50.000 0.00 0.00 0.00 1.98
144 145 3.076182 CCTCTATGGCCCCTAAGACTCTA 59.924 52.174 0.00 0.00 0.00 2.43
145 146 2.158234 CCTCTATGGCCCCTAAGACTCT 60.158 54.545 0.00 0.00 0.00 3.24
146 147 2.252714 CCTCTATGGCCCCTAAGACTC 58.747 57.143 0.00 0.00 0.00 3.36
147 148 1.581149 ACCTCTATGGCCCCTAAGACT 59.419 52.381 0.00 0.00 40.22 3.24
148 149 1.972075 GACCTCTATGGCCCCTAAGAC 59.028 57.143 0.00 0.00 40.22 3.01
149 150 1.480683 CGACCTCTATGGCCCCTAAGA 60.481 57.143 0.00 0.00 40.22 2.10
150 151 0.969894 CGACCTCTATGGCCCCTAAG 59.030 60.000 0.00 0.00 40.22 2.18
151 152 0.471211 CCGACCTCTATGGCCCCTAA 60.471 60.000 0.00 0.00 40.22 2.69
152 153 1.155390 CCGACCTCTATGGCCCCTA 59.845 63.158 0.00 0.00 40.22 3.53
153 154 2.122813 CCGACCTCTATGGCCCCT 60.123 66.667 0.00 0.00 40.22 4.79
154 155 3.242291 CCCGACCTCTATGGCCCC 61.242 72.222 0.00 0.00 40.22 5.80
155 156 3.942439 GCCCGACCTCTATGGCCC 61.942 72.222 0.00 0.00 40.22 5.80
156 157 2.520536 ATGCCCGACCTCTATGGCC 61.521 63.158 0.00 0.00 43.35 5.36
157 158 1.302033 CATGCCCGACCTCTATGGC 60.302 63.158 0.00 0.00 44.27 4.40
158 159 0.979665 ATCATGCCCGACCTCTATGG 59.020 55.000 0.00 0.00 42.93 2.74
159 160 1.943046 GCATCATGCCCGACCTCTATG 60.943 57.143 0.00 0.00 37.42 2.23
160 161 0.322975 GCATCATGCCCGACCTCTAT 59.677 55.000 0.00 0.00 37.42 1.98
161 162 1.748403 GCATCATGCCCGACCTCTA 59.252 57.895 0.00 0.00 37.42 2.43
162 163 2.507944 GCATCATGCCCGACCTCT 59.492 61.111 0.00 0.00 37.42 3.69
163 164 2.969238 CGCATCATGCCCGACCTC 60.969 66.667 3.38 0.00 41.12 3.85
164 165 3.451556 CTCGCATCATGCCCGACCT 62.452 63.158 3.38 0.00 41.12 3.85
165 166 2.969238 CTCGCATCATGCCCGACC 60.969 66.667 3.38 0.00 41.12 4.79
166 167 2.969238 CCTCGCATCATGCCCGAC 60.969 66.667 3.38 0.00 41.12 4.79
167 168 4.240103 CCCTCGCATCATGCCCGA 62.240 66.667 3.38 0.00 41.12 5.14
169 170 4.881440 TGCCCTCGCATCATGCCC 62.881 66.667 3.38 0.00 41.12 5.36
170 171 2.138656 GATTGCCCTCGCATCATGCC 62.139 60.000 3.38 0.00 46.67 4.40
171 172 1.285023 GATTGCCCTCGCATCATGC 59.715 57.895 0.00 0.00 46.67 4.06
172 173 1.848932 CGGATTGCCCTCGCATCATG 61.849 60.000 0.00 0.00 46.67 3.07
173 174 1.598962 CGGATTGCCCTCGCATCAT 60.599 57.895 0.00 0.00 46.67 2.45
174 175 2.203056 CGGATTGCCCTCGCATCA 60.203 61.111 0.00 0.00 46.67 3.07
175 176 1.958205 CTCGGATTGCCCTCGCATC 60.958 63.158 0.00 0.00 46.67 3.91
176 177 2.109799 CTCGGATTGCCCTCGCAT 59.890 61.111 0.00 0.00 46.67 4.73
177 178 3.390521 ACTCGGATTGCCCTCGCA 61.391 61.111 0.00 0.00 45.49 5.10
178 179 2.852495 TTCACTCGGATTGCCCTCGC 62.852 60.000 0.00 0.00 0.00 5.03
179 180 0.807667 CTTCACTCGGATTGCCCTCG 60.808 60.000 0.00 0.00 0.00 4.63
180 181 0.250513 ACTTCACTCGGATTGCCCTC 59.749 55.000 0.00 0.00 0.00 4.30
181 182 0.693049 AACTTCACTCGGATTGCCCT 59.307 50.000 0.00 0.00 0.00 5.19
182 183 0.804989 CAACTTCACTCGGATTGCCC 59.195 55.000 0.00 0.00 0.00 5.36
183 184 0.804989 CCAACTTCACTCGGATTGCC 59.195 55.000 0.00 0.00 0.00 4.52
184 185 0.804989 CCCAACTTCACTCGGATTGC 59.195 55.000 0.00 0.00 0.00 3.56
185 186 2.185004 ACCCAACTTCACTCGGATTG 57.815 50.000 0.00 0.00 0.00 2.67
186 187 2.951229 AACCCAACTTCACTCGGATT 57.049 45.000 0.00 0.00 0.00 3.01
187 188 5.888982 ATATAACCCAACTTCACTCGGAT 57.111 39.130 0.00 0.00 0.00 4.18
188 189 6.576185 GTTATATAACCCAACTTCACTCGGA 58.424 40.000 13.73 0.00 0.00 4.55
189 190 6.839820 GTTATATAACCCAACTTCACTCGG 57.160 41.667 13.73 0.00 0.00 4.63
205 206 9.531942 CACGTTGGTGTTACATAAGGTTATATA 57.468 33.333 7.53 0.00 39.38 0.86
206 207 8.259411 TCACGTTGGTGTTACATAAGGTTATAT 58.741 33.333 7.53 0.00 44.68 0.86
207 208 7.609960 TCACGTTGGTGTTACATAAGGTTATA 58.390 34.615 7.53 0.00 44.68 0.98
208 209 6.465948 TCACGTTGGTGTTACATAAGGTTAT 58.534 36.000 7.53 0.00 44.68 1.89
209 210 5.851720 TCACGTTGGTGTTACATAAGGTTA 58.148 37.500 7.53 0.43 44.68 2.85
210 211 4.706035 TCACGTTGGTGTTACATAAGGTT 58.294 39.130 7.53 0.00 44.68 3.50
211 212 4.339872 TCACGTTGGTGTTACATAAGGT 57.660 40.909 0.00 0.00 44.68 3.50
212 213 4.153475 CCTTCACGTTGGTGTTACATAAGG 59.847 45.833 0.00 0.00 44.68 2.69
213 214 4.153475 CCCTTCACGTTGGTGTTACATAAG 59.847 45.833 0.00 0.00 44.68 1.73
214 215 4.066490 CCCTTCACGTTGGTGTTACATAA 58.934 43.478 0.00 0.00 44.68 1.90
215 216 3.324268 TCCCTTCACGTTGGTGTTACATA 59.676 43.478 0.00 0.00 44.68 2.29
216 217 2.105134 TCCCTTCACGTTGGTGTTACAT 59.895 45.455 0.00 0.00 44.68 2.29
217 218 1.485480 TCCCTTCACGTTGGTGTTACA 59.515 47.619 0.00 0.00 44.68 2.41
218 219 2.243602 TCCCTTCACGTTGGTGTTAC 57.756 50.000 0.00 0.00 44.68 2.50
219 220 2.635915 AGATCCCTTCACGTTGGTGTTA 59.364 45.455 0.00 0.00 44.68 2.41
220 221 1.420138 AGATCCCTTCACGTTGGTGTT 59.580 47.619 0.00 0.00 44.68 3.32
221 222 1.056660 AGATCCCTTCACGTTGGTGT 58.943 50.000 0.00 0.00 44.68 4.16
222 223 2.076863 GAAGATCCCTTCACGTTGGTG 58.923 52.381 0.00 0.00 46.18 4.17
223 224 2.474410 GAAGATCCCTTCACGTTGGT 57.526 50.000 0.00 0.00 46.18 3.67
232 233 9.571816 GAAAAGATGATGATTAGAAGATCCCTT 57.428 33.333 0.00 0.00 34.81 3.95
233 234 8.947305 AGAAAAGATGATGATTAGAAGATCCCT 58.053 33.333 0.00 0.00 0.00 4.20
234 235 9.571816 AAGAAAAGATGATGATTAGAAGATCCC 57.428 33.333 0.00 0.00 0.00 3.85
257 258 9.603298 CGAGTGTGCGTACTATATATTAAAAGA 57.397 33.333 4.97 0.00 0.00 2.52
258 259 9.390795 ACGAGTGTGCGTACTATATATTAAAAG 57.609 33.333 4.97 0.00 43.61 2.27
259 260 9.172820 CACGAGTGTGCGTACTATATATTAAAA 57.827 33.333 4.97 0.00 43.59 1.52
260 261 8.718047 CACGAGTGTGCGTACTATATATTAAA 57.282 34.615 4.97 0.00 43.59 1.52
277 278 5.940192 TTTTCTCAAATATGCACGAGTGT 57.060 34.783 5.07 0.00 0.00 3.55
305 306 9.071221 GCACGTGATGTTTCAATCAATAAATAA 57.929 29.630 22.23 0.00 38.28 1.40
306 307 8.239998 TGCACGTGATGTTTCAATCAATAAATA 58.760 29.630 22.23 0.00 38.28 1.40
307 308 7.089538 TGCACGTGATGTTTCAATCAATAAAT 58.910 30.769 22.23 0.00 38.28 1.40
308 309 6.442112 TGCACGTGATGTTTCAATCAATAAA 58.558 32.000 22.23 0.00 38.28 1.40
309 310 6.006759 TGCACGTGATGTTTCAATCAATAA 57.993 33.333 22.23 0.00 38.28 1.40
310 311 5.619625 TGCACGTGATGTTTCAATCAATA 57.380 34.783 22.23 0.00 38.28 1.90
311 312 4.502171 TGCACGTGATGTTTCAATCAAT 57.498 36.364 22.23 0.00 38.28 2.57
312 313 3.978718 TGCACGTGATGTTTCAATCAA 57.021 38.095 22.23 0.00 38.28 2.57
313 314 3.978718 TTGCACGTGATGTTTCAATCA 57.021 38.095 22.23 0.00 34.16 2.57
314 315 5.633996 TTTTTGCACGTGATGTTTCAATC 57.366 34.783 22.23 0.00 32.48 2.67
399 400 2.421314 CCGGCGCATGTATCCAGA 59.579 61.111 10.83 0.00 0.00 3.86
418 419 7.439655 GGAGACGTCATTATTCTGCTATTTTCT 59.560 37.037 19.50 0.00 0.00 2.52
423 424 5.777802 CAGGAGACGTCATTATTCTGCTAT 58.222 41.667 19.50 0.00 36.03 2.97
570 572 1.509923 GCTTTGCATCTGGTCTGGC 59.490 57.895 0.00 0.00 0.00 4.85
724 727 3.313012 AAGCAAGTTTTTATTCGGCCC 57.687 42.857 0.00 0.00 0.00 5.80
884 887 2.097347 GCACAAAGAAGAAGACGACGAC 60.097 50.000 0.00 0.00 0.00 4.34
885 888 2.124903 GCACAAAGAAGAAGACGACGA 58.875 47.619 0.00 0.00 0.00 4.20
887 890 2.348966 GCAGCACAAAGAAGAAGACGAC 60.349 50.000 0.00 0.00 0.00 4.34
890 893 3.304324 GGAAGCAGCACAAAGAAGAAGAC 60.304 47.826 0.00 0.00 0.00 3.01
982 985 2.305314 ATCTCGACCCCTCCCTCCTG 62.305 65.000 0.00 0.00 0.00 3.86
1332 1349 1.305381 CTTCCTCCACGACCCTCCT 60.305 63.158 0.00 0.00 0.00 3.69
1482 1499 0.600255 ACGCCACGAGGAAGAACAAG 60.600 55.000 1.86 0.00 36.89 3.16
1483 1500 0.878523 CACGCCACGAGGAAGAACAA 60.879 55.000 1.86 0.00 36.89 2.83
1698 1718 1.090728 TGCACGTGAGCAAAACAGAA 58.909 45.000 22.23 0.00 42.46 3.02
1724 1744 5.883328 TCATTGATCAACGTAGCGATAAC 57.117 39.130 11.07 0.00 0.00 1.89
1761 1781 4.512571 GCAAATTCTTGGCAAACAACTGAT 59.487 37.500 0.00 0.00 34.76 2.90
1765 1785 4.529446 CATGCAAATTCTTGGCAAACAAC 58.471 39.130 0.00 0.00 34.76 3.32
1772 1792 5.806366 AAATTAGCATGCAAATTCTTGGC 57.194 34.783 21.98 0.00 32.76 4.52
1773 1793 9.710979 CAATTAAATTAGCATGCAAATTCTTGG 57.289 29.630 21.98 0.00 32.76 3.61
1804 1824 8.506437 TCGAACTATATTCCGTTACGATGTTAT 58.494 33.333 6.24 1.01 0.00 1.89
1805 1825 7.860613 TCGAACTATATTCCGTTACGATGTTA 58.139 34.615 6.24 0.00 0.00 2.41
1806 1826 6.728200 TCGAACTATATTCCGTTACGATGTT 58.272 36.000 6.24 0.52 0.00 2.71
1807 1827 6.304356 TCGAACTATATTCCGTTACGATGT 57.696 37.500 6.24 0.00 0.00 3.06
1808 1828 5.283247 GCTCGAACTATATTCCGTTACGATG 59.717 44.000 6.24 0.00 0.00 3.84
1816 1836 1.714460 GCACGCTCGAACTATATTCCG 59.286 52.381 0.00 0.00 0.00 4.30
1817 1837 2.059541 GGCACGCTCGAACTATATTCC 58.940 52.381 0.00 0.00 0.00 3.01
1840 1860 1.004560 CGCCTCTGAAAGCTGGACA 60.005 57.895 0.00 0.00 30.55 4.02
1843 1863 0.739112 GAGACGCCTCTGAAAGCTGG 60.739 60.000 0.00 0.00 36.50 4.85
1862 1882 0.809241 CTGCCGAGCTAAGCTTCAGG 60.809 60.000 0.00 1.58 39.88 3.86
1943 1963 2.159503 ACAGTCTCTGACGCTTACGATG 60.160 50.000 3.70 0.00 37.57 3.84
1946 1966 1.197036 TGACAGTCTCTGACGCTTACG 59.803 52.381 1.31 0.00 39.08 3.18
1960 1980 3.444388 TGCTTAAACCCGTTTTTGACAGT 59.556 39.130 0.00 0.00 34.23 3.55
2041 2061 1.007387 GTGAAGCAAAAGTGGCCCG 60.007 57.895 0.00 0.00 0.00 6.13
2042 2062 1.367471 GGTGAAGCAAAAGTGGCCC 59.633 57.895 0.00 0.00 0.00 5.80
2043 2063 0.463620 TTGGTGAAGCAAAAGTGGCC 59.536 50.000 0.00 0.00 0.00 5.36
2044 2064 1.538849 CCTTGGTGAAGCAAAAGTGGC 60.539 52.381 0.00 0.00 0.00 5.01
2073 2097 3.348647 TGCTTGCAGAGGTAATTAGCA 57.651 42.857 16.53 4.95 35.05 3.49
2098 2126 2.231964 TCTTTGGCTGATCATTGTTGGC 59.768 45.455 0.00 0.00 0.00 4.52
2099 2127 4.730949 ATCTTTGGCTGATCATTGTTGG 57.269 40.909 0.00 0.00 0.00 3.77
2100 2128 9.459640 CTAATTATCTTTGGCTGATCATTGTTG 57.540 33.333 0.00 0.00 0.00 3.33
2101 2129 9.412460 TCTAATTATCTTTGGCTGATCATTGTT 57.588 29.630 0.00 0.00 0.00 2.83
2102 2130 8.844244 GTCTAATTATCTTTGGCTGATCATTGT 58.156 33.333 0.00 0.00 0.00 2.71
2103 2131 9.064706 AGTCTAATTATCTTTGGCTGATCATTG 57.935 33.333 0.00 0.00 0.00 2.82
2104 2132 9.638176 AAGTCTAATTATCTTTGGCTGATCATT 57.362 29.630 0.00 0.00 0.00 2.57
2125 2153 6.715347 AATGTTCAGCCTTTTTGTAAGTCT 57.285 33.333 0.00 0.00 0.00 3.24
2126 2154 7.378728 GTGTAATGTTCAGCCTTTTTGTAAGTC 59.621 37.037 0.00 0.00 0.00 3.01
2128 2156 6.640907 GGTGTAATGTTCAGCCTTTTTGTAAG 59.359 38.462 0.00 0.00 0.00 2.34
2129 2157 6.508777 GGTGTAATGTTCAGCCTTTTTGTAA 58.491 36.000 0.00 0.00 0.00 2.41
2130 2158 5.278071 CGGTGTAATGTTCAGCCTTTTTGTA 60.278 40.000 0.00 0.00 0.00 2.41
2176 2212 6.842437 TGTCAGAGAATAGCTTCAGTAACT 57.158 37.500 0.00 0.00 33.56 2.24
2198 2246 3.490759 GCACGGCGTCAGACCATG 61.491 66.667 10.85 0.00 0.00 3.66
2199 2247 4.760047 GGCACGGCGTCAGACCAT 62.760 66.667 10.85 0.00 0.00 3.55
2215 2263 0.318869 TGCTGAAATGCAAAGCACGG 60.319 50.000 11.36 0.00 43.04 4.94
2362 2410 1.979693 GACTGACCTCGGAGTGCCT 60.980 63.158 4.02 0.00 0.00 4.75
2394 2442 0.609662 GCAGTGGGTTTACGAGGGTA 59.390 55.000 0.00 0.00 0.00 3.69
2437 2485 1.975680 AGGGTCACAAGACATACCGTT 59.024 47.619 0.00 0.00 46.80 4.44
2531 2579 2.825836 CAGGTGATCTTGGCGCCC 60.826 66.667 26.77 8.57 36.58 6.13
2666 2714 2.177734 GACCCTTACCCTTCTTCGACT 58.822 52.381 0.00 0.00 0.00 4.18
2740 2788 1.322442 AGGAAGAAGTTGGTTGCAGC 58.678 50.000 0.00 0.00 0.00 5.25
3022 3072 6.036735 GGCGCTGAAACTGTTAATATAGTCAA 59.963 38.462 7.64 0.00 0.00 3.18
3052 3102 3.195661 CTGCGAAACCCAGACCTAATAC 58.804 50.000 0.00 0.00 32.03 1.89
3061 3111 1.580845 CCTTCTGCTGCGAAACCCAG 61.581 60.000 7.95 0.00 0.00 4.45
3062 3112 1.600636 CCTTCTGCTGCGAAACCCA 60.601 57.895 7.95 0.00 0.00 4.51
3063 3113 0.678048 ATCCTTCTGCTGCGAAACCC 60.678 55.000 7.95 0.00 0.00 4.11
3064 3114 0.729690 GATCCTTCTGCTGCGAAACC 59.270 55.000 7.95 0.00 0.00 3.27
3065 3115 1.396301 CAGATCCTTCTGCTGCGAAAC 59.604 52.381 7.95 2.46 42.79 2.78
3132 3184 1.135689 GCTAGCACAACATCAAACCCG 60.136 52.381 10.63 0.00 0.00 5.28
3133 3185 1.885887 TGCTAGCACAACATCAAACCC 59.114 47.619 14.93 0.00 0.00 4.11
3168 3232 5.550290 AGAAGAGCAAAAAGAGGAAGAGAG 58.450 41.667 0.00 0.00 0.00 3.20
3170 3234 4.694982 GGAGAAGAGCAAAAAGAGGAAGAG 59.305 45.833 0.00 0.00 0.00 2.85
3172 3236 4.392940 TGGAGAAGAGCAAAAAGAGGAAG 58.607 43.478 0.00 0.00 0.00 3.46
3173 3237 4.437682 TGGAGAAGAGCAAAAAGAGGAA 57.562 40.909 0.00 0.00 0.00 3.36
3174 3238 4.141390 ACTTGGAGAAGAGCAAAAAGAGGA 60.141 41.667 0.00 0.00 32.98 3.71
3175 3239 4.140536 ACTTGGAGAAGAGCAAAAAGAGG 58.859 43.478 0.00 0.00 32.98 3.69
3176 3240 5.760253 TGTACTTGGAGAAGAGCAAAAAGAG 59.240 40.000 0.00 0.00 32.98 2.85
3177 3241 5.680619 TGTACTTGGAGAAGAGCAAAAAGA 58.319 37.500 0.00 0.00 32.98 2.52
3178 3242 5.561725 GCTGTACTTGGAGAAGAGCAAAAAG 60.562 44.000 0.00 0.00 30.44 2.27
3209 3273 1.689959 CACGCTGTGATCCAAAAAGC 58.310 50.000 3.04 0.00 35.23 3.51
3245 3309 2.687935 TGAGAAAAGGTGCCTGTGAAAC 59.312 45.455 0.00 0.00 37.35 2.78
3394 3470 6.489361 GGGATCTCTGATGCATTTCACTAAAT 59.511 38.462 0.00 0.00 35.65 1.40
3395 3471 5.824624 GGGATCTCTGATGCATTTCACTAAA 59.175 40.000 0.00 0.00 0.00 1.85
3396 3472 5.104402 TGGGATCTCTGATGCATTTCACTAA 60.104 40.000 0.00 0.00 0.00 2.24
3397 3473 4.409901 TGGGATCTCTGATGCATTTCACTA 59.590 41.667 0.00 0.00 0.00 2.74
3522 3598 0.385390 AGGGCTGCGAAAACTGTTTG 59.615 50.000 6.53 0.00 0.00 2.93
3523 3599 0.668535 GAGGGCTGCGAAAACTGTTT 59.331 50.000 0.00 0.00 0.00 2.83
3533 3609 2.185350 CACAGGTAGAGGGCTGCG 59.815 66.667 0.00 0.00 0.00 5.18
3576 3652 0.731417 CCGAAGGCTGAGCTGAATTG 59.269 55.000 3.72 0.00 46.14 2.32
3577 3653 3.165606 CCGAAGGCTGAGCTGAATT 57.834 52.632 3.72 0.00 46.14 2.17
3606 3682 4.358214 TCCACCCTCAAAAAGAAAAAGGT 58.642 39.130 0.00 0.00 0.00 3.50
3698 3779 3.556513 CTTGTCGATATGTCTAGTCCGC 58.443 50.000 0.00 0.00 0.00 5.54
3757 3838 0.883833 CAGTGTGTCTTGGGGCATTC 59.116 55.000 0.00 0.00 0.00 2.67
3765 3846 1.812571 GGGGCATAACAGTGTGTCTTG 59.187 52.381 0.00 0.00 0.00 3.02
3771 3852 0.322187 GGTTCGGGGCATAACAGTGT 60.322 55.000 0.00 0.00 0.00 3.55
3786 3867 2.093921 GCTCTGGAGTAGGTTCAGGTTC 60.094 54.545 0.00 0.00 0.00 3.62
3819 3900 5.741011 TGCTATTCGGTTTAGTCATTCCTT 58.259 37.500 0.00 0.00 0.00 3.36
3829 3910 4.819630 GTGAATGGGATGCTATTCGGTTTA 59.180 41.667 16.50 0.00 36.36 2.01
3830 3911 3.632145 GTGAATGGGATGCTATTCGGTTT 59.368 43.478 16.50 0.00 36.36 3.27
3831 3912 3.214328 GTGAATGGGATGCTATTCGGTT 58.786 45.455 16.50 0.00 36.36 4.44
3832 3913 2.487265 GGTGAATGGGATGCTATTCGGT 60.487 50.000 16.50 0.00 36.36 4.69
3833 3914 2.154462 GGTGAATGGGATGCTATTCGG 58.846 52.381 16.50 0.00 36.36 4.30
3834 3915 1.800586 CGGTGAATGGGATGCTATTCG 59.199 52.381 16.50 4.08 36.36 3.34
3835 3916 2.808543 GTCGGTGAATGGGATGCTATTC 59.191 50.000 15.11 15.11 34.64 1.75
3836 3917 2.487265 GGTCGGTGAATGGGATGCTATT 60.487 50.000 0.00 0.00 0.00 1.73
3837 3918 1.072331 GGTCGGTGAATGGGATGCTAT 59.928 52.381 0.00 0.00 0.00 2.97
3838 3919 0.468226 GGTCGGTGAATGGGATGCTA 59.532 55.000 0.00 0.00 0.00 3.49
3847 3928 4.360951 TTTTGTCCTTAGGTCGGTGAAT 57.639 40.909 0.00 0.00 0.00 2.57
3855 3936 3.332968 TCTCCCCTTTTTGTCCTTAGGT 58.667 45.455 0.00 0.00 0.00 3.08
3860 3941 1.545651 CGCTTCTCCCCTTTTTGTCCT 60.546 52.381 0.00 0.00 0.00 3.85
4102 4222 8.729756 TCACACTTGATATTACCACTTTTGATG 58.270 33.333 0.00 0.00 0.00 3.07
4105 4225 7.870826 TGTCACACTTGATATTACCACTTTTG 58.129 34.615 0.00 0.00 33.11 2.44
4108 4228 8.635765 ATTTGTCACACTTGATATTACCACTT 57.364 30.769 0.00 0.00 33.11 3.16
4135 4255 7.607607 TGCTATGTCAGTAGTTTCATCACATTT 59.392 33.333 0.00 0.00 0.00 2.32
4137 4257 6.643388 TGCTATGTCAGTAGTTTCATCACAT 58.357 36.000 0.00 0.00 0.00 3.21
4153 4273 5.682862 CACTTTCTGTTGTTGTTGCTATGTC 59.317 40.000 0.00 0.00 0.00 3.06
4155 4275 5.820131 TCACTTTCTGTTGTTGTTGCTATG 58.180 37.500 0.00 0.00 0.00 2.23
4157 4277 5.392595 GGTTCACTTTCTGTTGTTGTTGCTA 60.393 40.000 0.00 0.00 0.00 3.49
4159 4279 3.612423 GGTTCACTTTCTGTTGTTGTTGC 59.388 43.478 0.00 0.00 0.00 4.17
4160 4280 4.173256 GGGTTCACTTTCTGTTGTTGTTG 58.827 43.478 0.00 0.00 0.00 3.33
4161 4281 3.829601 TGGGTTCACTTTCTGTTGTTGTT 59.170 39.130 0.00 0.00 0.00 2.83
4162 4282 3.426615 TGGGTTCACTTTCTGTTGTTGT 58.573 40.909 0.00 0.00 0.00 3.32
4171 4304 5.767816 TCTTTAGCTTTGGGTTCACTTTC 57.232 39.130 0.00 0.00 0.00 2.62
4294 4589 9.515020 TGTTTCAGTGACATTCTGTTAATTTTC 57.485 29.630 0.00 0.00 34.86 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.