Multiple sequence alignment - TraesCS7B01G290300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G290300 chr7B 100.000 2485 0 0 1 2485 526676285 526678769 0.000000e+00 4590
1 TraesCS7B01G290300 chr7B 100.000 1590 0 0 2952 4541 526679236 526680825 0.000000e+00 2937
2 TraesCS7B01G290300 chr7B 76.349 241 44 12 472 706 106267389 106267156 2.870000e-22 117
3 TraesCS7B01G290300 chr7A 94.796 1595 68 6 896 2485 563814556 563816140 0.000000e+00 2471
4 TraesCS7B01G290300 chr7A 96.239 771 24 2 2952 3719 563816209 563816977 0.000000e+00 1258
5 TraesCS7B01G290300 chr7A 90.517 232 17 3 4065 4292 563818120 563818350 7.380000e-78 302
6 TraesCS7B01G290300 chr7A 92.366 131 8 1 3805 3933 563816973 563817103 7.760000e-43 185
7 TraesCS7B01G290300 chr7A 90.196 102 8 2 3709 3809 188622060 188622160 1.030000e-26 132
8 TraesCS7B01G290300 chr7A 79.290 169 19 14 447 605 511539925 511539763 2.230000e-18 104
9 TraesCS7B01G290300 chr7D 89.955 1563 98 27 896 2428 498225038 498226571 0.000000e+00 1962
10 TraesCS7B01G290300 chr7D 94.825 773 29 5 2957 3724 498226786 498227552 0.000000e+00 1195
11 TraesCS7B01G290300 chr7D 93.056 648 27 7 3805 4439 498227551 498228193 0.000000e+00 931
12 TraesCS7B01G290300 chr7D 82.870 683 92 16 1 674 298460307 298459641 1.410000e-164 590
13 TraesCS7B01G290300 chr7D 95.455 88 3 1 3723 3809 133048839 133048926 6.130000e-29 139
14 TraesCS7B01G290300 chr7D 91.000 100 7 2 3709 3806 93543120 93543021 2.850000e-27 134
15 TraesCS7B01G290300 chr7D 96.774 62 1 1 2425 2485 498226651 498226712 8.040000e-18 102
16 TraesCS7B01G290300 chr1B 81.061 792 110 21 1 769 1446204 1445430 3.020000e-166 595
17 TraesCS7B01G290300 chr1B 91.489 94 7 1 3718 3810 619215347 619215440 1.330000e-25 128
18 TraesCS7B01G290300 chr1B 73.066 349 78 15 408 748 29511102 29511442 4.800000e-20 110
19 TraesCS7B01G290300 chr2A 80.838 788 123 18 1 778 162425517 162424748 1.090000e-165 593
20 TraesCS7B01G290300 chr2A 78.409 440 72 13 333 768 497693395 497693815 9.690000e-67 265
21 TraesCS7B01G290300 chr3B 90.831 349 32 0 1 349 507282953 507283301 6.880000e-128 468
22 TraesCS7B01G290300 chr3B 85.577 416 51 7 1 413 630577079 630576670 1.170000e-115 427
23 TraesCS7B01G290300 chr1D 90.616 341 32 0 1 341 390397148 390397488 1.930000e-123 453
24 TraesCS7B01G290300 chr6D 89.014 355 38 1 1 355 242989171 242989524 5.390000e-119 438
25 TraesCS7B01G290300 chr6A 89.053 338 37 0 1 338 430922942 430923279 1.950000e-113 420
26 TraesCS7B01G290300 chr6A 81.902 326 55 2 20 341 572314439 572314764 5.790000e-69 272
27 TraesCS7B01G290300 chr5A 88.539 349 33 4 1 343 387915919 387915572 2.530000e-112 416
28 TraesCS7B01G290300 chr5A 95.294 85 3 1 3723 3806 481203790 481203874 2.850000e-27 134
29 TraesCS7B01G290300 chr5D 77.515 507 96 13 240 739 485938791 485938296 5.750000e-74 289
30 TraesCS7B01G290300 chr5D 77.451 306 40 21 332 628 476935378 476935663 6.080000e-34 156
31 TraesCS7B01G290300 chr5D 92.473 93 6 1 3718 3809 292407956 292408048 1.030000e-26 132
32 TraesCS7B01G290300 chr6B 77.551 441 73 18 347 770 333516354 333516785 4.540000e-60 243
33 TraesCS7B01G290300 chr2D 93.407 91 5 1 3719 3808 108886578 108886668 2.850000e-27 134
34 TraesCS7B01G290300 chr4D 93.258 89 5 1 3719 3806 453135308 453135396 3.690000e-26 130
35 TraesCS7B01G290300 chr3D 90.000 100 8 2 3723 3820 146981037 146981136 1.330000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G290300 chr7B 526676285 526680825 4540 False 3763.5 4590 100.0000 1 4541 2 chr7B.!!$F1 4540
1 TraesCS7B01G290300 chr7A 563814556 563818350 3794 False 1054.0 2471 93.4795 896 4292 4 chr7A.!!$F2 3396
2 TraesCS7B01G290300 chr7D 498225038 498228193 3155 False 1047.5 1962 93.6525 896 4439 4 chr7D.!!$F2 3543
3 TraesCS7B01G290300 chr7D 298459641 298460307 666 True 590.0 590 82.8700 1 674 1 chr7D.!!$R2 673
4 TraesCS7B01G290300 chr1B 1445430 1446204 774 True 595.0 595 81.0610 1 769 1 chr1B.!!$R1 768
5 TraesCS7B01G290300 chr2A 162424748 162425517 769 True 593.0 593 80.8380 1 778 1 chr2A.!!$R1 777

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
833 874 0.035630 AGTGCTGAAGAGATGTGCCC 60.036 55.0 0.0 0.0 0.00 5.36 F
835 876 0.035725 TGCTGAAGAGATGTGCCCAG 60.036 55.0 0.0 0.0 0.00 4.45 F
836 877 0.035630 GCTGAAGAGATGTGCCCAGT 60.036 55.0 0.0 0.0 0.00 4.00 F
854 895 0.105778 GTCCCATCAGTAGCAGAGCC 59.894 60.0 0.0 0.0 0.00 4.70 F
863 904 0.320247 GTAGCAGAGCCATCATCGGG 60.320 60.0 0.0 0.0 0.00 5.14 F
1375 1416 0.531311 TCGCATATCTGTGCCTGCTG 60.531 55.0 0.0 0.0 42.06 4.41 F
1377 1418 0.661552 GCATATCTGTGCCTGCTGTG 59.338 55.0 0.0 0.0 39.18 3.66 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2025 2085 2.805671 TCCACTGAATACAACAGTTGCG 59.194 45.455 13.56 0.0 44.69 4.85 R
2090 2150 3.228188 AGAGACCTGTTGAATTTGGCA 57.772 42.857 0.00 0.0 0.00 4.92 R
2166 2235 6.000246 TGAATGGCACCATAAACTCTATGA 58.000 37.500 1.81 0.0 35.31 2.15 R
2952 3106 5.694910 CCTGAACGTATGTAACAACAAGAGT 59.305 40.000 0.00 0.0 0.00 3.24 R
2954 3108 5.603596 ACCTGAACGTATGTAACAACAAGA 58.396 37.500 0.00 0.0 0.00 3.02 R
3294 3452 1.209747 ACCTCTTCCTGGTATTTCGCC 59.790 52.381 0.00 0.0 35.80 5.54 R
3563 3721 2.975851 CAGACAATTTCAAGCACGAAGC 59.024 45.455 0.00 0.0 46.19 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
111 117 0.036388 GATCGAGCCCAGGAACAACA 60.036 55.000 0.00 0.00 0.00 3.33
112 118 0.400213 ATCGAGCCCAGGAACAACAA 59.600 50.000 0.00 0.00 0.00 2.83
120 126 1.453015 AGGAACAACAACCGCTGCA 60.453 52.632 0.00 0.00 0.00 4.41
248 254 1.319614 CCATTTGTACCTTGGGGGCG 61.320 60.000 0.00 0.00 39.10 6.13
273 279 0.249405 TCGAACAACTTACGGGCGTT 60.249 50.000 0.00 0.00 0.00 4.84
383 411 1.002624 GGGGGTGATTTCGTGCTCA 60.003 57.895 0.00 0.00 0.00 4.26
385 413 0.605319 GGGGTGATTTCGTGCTCACA 60.605 55.000 13.21 0.00 42.83 3.58
417 448 2.197324 GGGTGGTGGGAAGCAACA 59.803 61.111 0.00 0.00 0.00 3.33
423 455 1.529244 GTGGGAAGCAACAGTGGCT 60.529 57.895 0.00 0.00 45.15 4.75
425 457 1.228245 GGGAAGCAACAGTGGCTCA 60.228 57.895 1.80 0.00 41.66 4.26
431 463 2.591715 AACAGTGGCTCACGGTGC 60.592 61.111 2.51 0.00 41.41 5.01
456 488 1.375523 GCTGGAAACGACGTGGGAT 60.376 57.895 0.00 0.00 0.00 3.85
517 549 2.926242 GGGACACCGGAACTGGGA 60.926 66.667 9.46 0.00 0.00 4.37
524 556 2.727392 CCGGAACTGGGATGCGGTA 61.727 63.158 0.00 0.00 45.43 4.02
526 558 1.905512 GGAACTGGGATGCGGTAGT 59.094 57.895 0.00 0.00 0.00 2.73
559 592 2.048222 CGAGGGCTTGCTGTCGAA 60.048 61.111 10.15 0.00 34.28 3.71
560 593 1.448540 CGAGGGCTTGCTGTCGAAT 60.449 57.895 10.15 0.00 34.28 3.34
570 603 0.608035 GCTGTCGAATGGGGTGGAAA 60.608 55.000 0.00 0.00 0.00 3.13
572 605 2.446435 CTGTCGAATGGGGTGGAAAAT 58.554 47.619 0.00 0.00 0.00 1.82
621 654 3.862991 GGGGAAGGAGTAGGCGGC 61.863 72.222 0.00 0.00 0.00 6.53
622 655 4.222847 GGGAAGGAGTAGGCGGCG 62.223 72.222 0.51 0.51 0.00 6.46
623 656 3.459063 GGAAGGAGTAGGCGGCGT 61.459 66.667 9.37 0.00 0.00 5.68
624 657 2.104530 GAAGGAGTAGGCGGCGTC 59.895 66.667 1.71 1.71 0.00 5.19
625 658 3.753070 GAAGGAGTAGGCGGCGTCG 62.753 68.421 4.29 4.29 39.81 5.12
629 662 4.415332 AGTAGGCGGCGTCGTGTG 62.415 66.667 12.58 0.00 38.89 3.82
656 697 1.092921 TTCGTTTCTGCACCAACGCT 61.093 50.000 17.19 0.00 44.37 5.07
664 705 0.036164 TGCACCAACGCTAATGAGGT 59.964 50.000 0.00 0.00 0.00 3.85
667 708 1.393539 CACCAACGCTAATGAGGTTCG 59.606 52.381 0.00 0.00 0.00 3.95
677 718 2.514458 ATGAGGTTCGAATTTGGGCT 57.486 45.000 0.00 0.00 0.00 5.19
685 726 6.184789 AGGTTCGAATTTGGGCTAGAAATAA 58.815 36.000 0.00 0.00 0.00 1.40
694 735 1.867865 GGCTAGAAATAAGTCGGCAGC 59.132 52.381 0.00 0.00 0.00 5.25
711 752 1.098712 AGCCGGACAAAAAGCGAACA 61.099 50.000 5.05 0.00 0.00 3.18
731 772 2.280524 CGTCTGTTTGGGTCGGCA 60.281 61.111 0.00 0.00 0.00 5.69
733 774 1.525077 GTCTGTTTGGGTCGGCACA 60.525 57.895 0.00 0.00 0.00 4.57
739 780 2.359015 TTTGGGTCGGCACATTGGGA 62.359 55.000 0.00 0.00 0.00 4.37
741 782 2.750237 GGTCGGCACATTGGGACC 60.750 66.667 0.00 0.00 41.84 4.46
743 784 1.378514 GTCGGCACATTGGGACCAT 60.379 57.895 0.00 0.00 0.00 3.55
749 790 2.615240 GGCACATTGGGACCATTTTTCC 60.615 50.000 0.00 0.00 0.00 3.13
752 793 2.969262 ACATTGGGACCATTTTTCCGTT 59.031 40.909 0.00 0.00 33.43 4.44
758 799 1.605232 GACCATTTTTCCGTTCGTGGT 59.395 47.619 3.32 3.32 42.27 4.16
771 812 0.611200 TCGTGGTGATCCAAACGGAT 59.389 50.000 10.17 0.00 46.49 4.18
773 814 1.674519 CGTGGTGATCCAAACGGATGA 60.675 52.381 0.00 0.00 43.70 2.92
778 819 1.776034 GATCCAAACGGATGAGCGCC 61.776 60.000 2.29 0.00 43.70 6.53
779 820 3.508840 CCAAACGGATGAGCGCCC 61.509 66.667 2.29 0.00 0.00 6.13
785 826 4.467084 GGATGAGCGCCCGAACCA 62.467 66.667 2.29 0.00 0.00 3.67
786 827 2.435938 GATGAGCGCCCGAACCAA 60.436 61.111 2.29 0.00 0.00 3.67
787 828 2.033448 ATGAGCGCCCGAACCAAA 59.967 55.556 2.29 0.00 0.00 3.28
788 829 1.376609 GATGAGCGCCCGAACCAAAT 61.377 55.000 2.29 0.00 0.00 2.32
789 830 1.656818 ATGAGCGCCCGAACCAAATG 61.657 55.000 2.29 0.00 0.00 2.32
790 831 2.033448 AGCGCCCGAACCAAATGA 59.967 55.556 2.29 0.00 0.00 2.57
791 832 1.582610 GAGCGCCCGAACCAAATGAA 61.583 55.000 2.29 0.00 0.00 2.57
792 833 0.965363 AGCGCCCGAACCAAATGAAT 60.965 50.000 2.29 0.00 0.00 2.57
793 834 0.736053 GCGCCCGAACCAAATGAATA 59.264 50.000 0.00 0.00 0.00 1.75
794 835 1.133407 GCGCCCGAACCAAATGAATAA 59.867 47.619 0.00 0.00 0.00 1.40
795 836 2.416162 GCGCCCGAACCAAATGAATAAA 60.416 45.455 0.00 0.00 0.00 1.40
796 837 3.839293 CGCCCGAACCAAATGAATAAAA 58.161 40.909 0.00 0.00 0.00 1.52
797 838 3.610677 CGCCCGAACCAAATGAATAAAAC 59.389 43.478 0.00 0.00 0.00 2.43
798 839 4.561105 GCCCGAACCAAATGAATAAAACA 58.439 39.130 0.00 0.00 0.00 2.83
799 840 4.625311 GCCCGAACCAAATGAATAAAACAG 59.375 41.667 0.00 0.00 0.00 3.16
800 841 5.565834 GCCCGAACCAAATGAATAAAACAGA 60.566 40.000 0.00 0.00 0.00 3.41
801 842 6.451393 CCCGAACCAAATGAATAAAACAGAA 58.549 36.000 0.00 0.00 0.00 3.02
802 843 6.364976 CCCGAACCAAATGAATAAAACAGAAC 59.635 38.462 0.00 0.00 0.00 3.01
803 844 6.920758 CCGAACCAAATGAATAAAACAGAACA 59.079 34.615 0.00 0.00 0.00 3.18
804 845 7.114811 CCGAACCAAATGAATAAAACAGAACAG 59.885 37.037 0.00 0.00 0.00 3.16
805 846 7.647715 CGAACCAAATGAATAAAACAGAACAGT 59.352 33.333 0.00 0.00 0.00 3.55
806 847 9.959749 GAACCAAATGAATAAAACAGAACAGTA 57.040 29.630 0.00 0.00 0.00 2.74
807 848 9.965824 AACCAAATGAATAAAACAGAACAGTAG 57.034 29.630 0.00 0.00 0.00 2.57
808 849 9.349713 ACCAAATGAATAAAACAGAACAGTAGA 57.650 29.630 0.00 0.00 0.00 2.59
813 854 7.847487 TGAATAAAACAGAACAGTAGAACACG 58.153 34.615 0.00 0.00 0.00 4.49
814 855 7.707464 TGAATAAAACAGAACAGTAGAACACGA 59.293 33.333 0.00 0.00 0.00 4.35
815 856 5.968387 AAAACAGAACAGTAGAACACGAG 57.032 39.130 0.00 0.00 0.00 4.18
816 857 4.650754 AACAGAACAGTAGAACACGAGT 57.349 40.909 0.00 0.00 0.00 4.18
817 858 3.966154 ACAGAACAGTAGAACACGAGTG 58.034 45.455 1.13 1.13 0.00 3.51
818 859 2.726760 CAGAACAGTAGAACACGAGTGC 59.273 50.000 2.76 0.00 0.00 4.40
819 860 2.623889 AGAACAGTAGAACACGAGTGCT 59.376 45.455 0.00 0.00 37.43 4.40
820 861 2.423926 ACAGTAGAACACGAGTGCTG 57.576 50.000 3.40 4.96 33.46 4.41
821 862 1.954382 ACAGTAGAACACGAGTGCTGA 59.046 47.619 3.40 0.00 33.46 4.26
822 863 2.361119 ACAGTAGAACACGAGTGCTGAA 59.639 45.455 3.40 0.00 33.46 3.02
823 864 2.983136 CAGTAGAACACGAGTGCTGAAG 59.017 50.000 3.40 0.00 33.46 3.02
824 865 2.885266 AGTAGAACACGAGTGCTGAAGA 59.115 45.455 3.40 0.00 33.46 2.87
825 866 2.430546 AGAACACGAGTGCTGAAGAG 57.569 50.000 2.76 0.00 30.26 2.85
826 867 1.957177 AGAACACGAGTGCTGAAGAGA 59.043 47.619 2.76 0.00 30.26 3.10
827 868 2.560542 AGAACACGAGTGCTGAAGAGAT 59.439 45.455 2.76 0.00 30.26 2.75
828 869 2.360553 ACACGAGTGCTGAAGAGATG 57.639 50.000 2.76 0.00 0.00 2.90
829 870 1.615883 ACACGAGTGCTGAAGAGATGT 59.384 47.619 2.76 0.00 0.00 3.06
830 871 1.991264 CACGAGTGCTGAAGAGATGTG 59.009 52.381 0.00 0.00 0.00 3.21
831 872 0.997932 CGAGTGCTGAAGAGATGTGC 59.002 55.000 0.00 0.00 0.00 4.57
832 873 1.367659 GAGTGCTGAAGAGATGTGCC 58.632 55.000 0.00 0.00 0.00 5.01
833 874 0.035630 AGTGCTGAAGAGATGTGCCC 60.036 55.000 0.00 0.00 0.00 5.36
834 875 0.321919 GTGCTGAAGAGATGTGCCCA 60.322 55.000 0.00 0.00 0.00 5.36
835 876 0.035725 TGCTGAAGAGATGTGCCCAG 60.036 55.000 0.00 0.00 0.00 4.45
836 877 0.035630 GCTGAAGAGATGTGCCCAGT 60.036 55.000 0.00 0.00 0.00 4.00
837 878 2.011046 GCTGAAGAGATGTGCCCAGTC 61.011 57.143 0.00 0.00 0.00 3.51
838 879 0.615331 TGAAGAGATGTGCCCAGTCC 59.385 55.000 0.00 0.00 0.00 3.85
839 880 0.107459 GAAGAGATGTGCCCAGTCCC 60.107 60.000 0.00 0.00 0.00 4.46
840 881 0.842030 AAGAGATGTGCCCAGTCCCA 60.842 55.000 0.00 0.00 0.00 4.37
841 882 0.622738 AGAGATGTGCCCAGTCCCAT 60.623 55.000 0.00 0.00 0.00 4.00
842 883 0.179034 GAGATGTGCCCAGTCCCATC 60.179 60.000 0.00 0.00 35.13 3.51
843 884 0.915872 AGATGTGCCCAGTCCCATCA 60.916 55.000 0.00 0.00 36.91 3.07
844 885 0.465097 GATGTGCCCAGTCCCATCAG 60.465 60.000 0.00 0.00 35.04 2.90
845 886 1.210204 ATGTGCCCAGTCCCATCAGT 61.210 55.000 0.00 0.00 0.00 3.41
846 887 0.546507 TGTGCCCAGTCCCATCAGTA 60.547 55.000 0.00 0.00 0.00 2.74
847 888 0.179000 GTGCCCAGTCCCATCAGTAG 59.821 60.000 0.00 0.00 0.00 2.57
848 889 1.147153 GCCCAGTCCCATCAGTAGC 59.853 63.158 0.00 0.00 0.00 3.58
849 890 1.626356 GCCCAGTCCCATCAGTAGCA 61.626 60.000 0.00 0.00 0.00 3.49
850 891 0.467384 CCCAGTCCCATCAGTAGCAG 59.533 60.000 0.00 0.00 0.00 4.24
851 892 1.489481 CCAGTCCCATCAGTAGCAGA 58.511 55.000 0.00 0.00 0.00 4.26
852 893 1.411977 CCAGTCCCATCAGTAGCAGAG 59.588 57.143 0.00 0.00 0.00 3.35
853 894 1.118838 AGTCCCATCAGTAGCAGAGC 58.881 55.000 0.00 0.00 0.00 4.09
854 895 0.105778 GTCCCATCAGTAGCAGAGCC 59.894 60.000 0.00 0.00 0.00 4.70
855 896 0.325577 TCCCATCAGTAGCAGAGCCA 60.326 55.000 0.00 0.00 0.00 4.75
856 897 0.763652 CCCATCAGTAGCAGAGCCAT 59.236 55.000 0.00 0.00 0.00 4.40
857 898 1.270732 CCCATCAGTAGCAGAGCCATC 60.271 57.143 0.00 0.00 0.00 3.51
858 899 1.415289 CCATCAGTAGCAGAGCCATCA 59.585 52.381 0.00 0.00 0.00 3.07
859 900 2.038689 CCATCAGTAGCAGAGCCATCAT 59.961 50.000 0.00 0.00 0.00 2.45
860 901 3.327626 CATCAGTAGCAGAGCCATCATC 58.672 50.000 0.00 0.00 0.00 2.92
861 902 1.339291 TCAGTAGCAGAGCCATCATCG 59.661 52.381 0.00 0.00 0.00 3.84
862 903 0.678395 AGTAGCAGAGCCATCATCGG 59.322 55.000 0.00 0.00 0.00 4.18
863 904 0.320247 GTAGCAGAGCCATCATCGGG 60.320 60.000 0.00 0.00 0.00 5.14
864 905 1.475169 TAGCAGAGCCATCATCGGGG 61.475 60.000 0.00 0.00 0.00 5.73
892 933 3.655276 GACAGAGGGTCGTTTTAGACA 57.345 47.619 0.00 0.00 42.62 3.41
893 934 3.986277 GACAGAGGGTCGTTTTAGACAA 58.014 45.455 0.00 0.00 42.62 3.18
894 935 4.374399 GACAGAGGGTCGTTTTAGACAAA 58.626 43.478 0.00 0.00 42.62 2.83
919 960 2.763448 CTCCTACTCAGAAACCCCAGAG 59.237 54.545 0.00 0.00 0.00 3.35
920 961 1.208293 CCTACTCAGAAACCCCAGAGC 59.792 57.143 0.00 0.00 0.00 4.09
921 962 1.208293 CTACTCAGAAACCCCAGAGCC 59.792 57.143 0.00 0.00 0.00 4.70
922 963 1.301293 CTCAGAAACCCCAGAGCCC 59.699 63.158 0.00 0.00 0.00 5.19
923 964 1.463214 TCAGAAACCCCAGAGCCCA 60.463 57.895 0.00 0.00 0.00 5.36
924 965 1.001641 CAGAAACCCCAGAGCCCAG 60.002 63.158 0.00 0.00 0.00 4.45
925 966 1.151810 AGAAACCCCAGAGCCCAGA 60.152 57.895 0.00 0.00 0.00 3.86
931 972 1.695597 CCCAGAGCCCAGATTCCCT 60.696 63.158 0.00 0.00 0.00 4.20
956 997 3.917760 CCTCGACCTCCATCCCGC 61.918 72.222 0.00 0.00 0.00 6.13
1071 1112 1.669115 GCTGCTCTTCAAGACGCCA 60.669 57.895 6.44 0.00 0.00 5.69
1203 1244 1.145598 CAGCATGGCCGAGATCAGT 59.854 57.895 0.00 0.00 0.00 3.41
1336 1377 0.543749 CACATCCCTCTTGGTCCCTC 59.456 60.000 0.00 0.00 34.77 4.30
1349 1390 1.544759 GGTCCCTCACGGTGTTTTGAT 60.545 52.381 8.17 0.00 0.00 2.57
1359 1400 2.661195 CGGTGTTTTGATTGGAAATCGC 59.339 45.455 0.00 0.00 0.00 4.58
1364 1405 6.198966 GGTGTTTTGATTGGAAATCGCATATC 59.801 38.462 0.00 0.00 0.00 1.63
1375 1416 0.531311 TCGCATATCTGTGCCTGCTG 60.531 55.000 0.00 0.00 42.06 4.41
1377 1418 0.661552 GCATATCTGTGCCTGCTGTG 59.338 55.000 0.00 0.00 39.18 3.66
1385 1426 3.368571 GCCTGCTGTGGTCTTGCC 61.369 66.667 0.00 0.00 37.90 4.52
1642 1691 4.798882 TCTTGTATGTTTCAGGTTTGGGT 58.201 39.130 0.00 0.00 0.00 4.51
1643 1692 5.205056 TCTTGTATGTTTCAGGTTTGGGTT 58.795 37.500 0.00 0.00 0.00 4.11
1670 1719 4.478317 AGTTCCATATGACCAAAGGGATGA 59.522 41.667 3.65 0.00 38.05 2.92
1782 1831 9.362151 TGTTTTGTCTTGTTCTAAATAATCCCT 57.638 29.630 0.00 0.00 0.00 4.20
1857 1906 5.505181 ACTCCTCCATCTGTTTTGTATGT 57.495 39.130 0.00 0.00 0.00 2.29
1937 1986 6.894654 TGGGATATTGAACATTAGGCTTTGAA 59.105 34.615 0.00 0.00 0.00 2.69
2090 2150 7.658525 TGATTATTGTGCCCTGTAAATTCAT 57.341 32.000 0.00 0.00 0.00 2.57
2117 2177 6.208204 CCAAATTCAACAGGTCTCTTCTTGAT 59.792 38.462 0.00 0.00 0.00 2.57
2120 2180 6.624352 TTCAACAGGTCTCTTCTTGATTTG 57.376 37.500 0.00 0.00 0.00 2.32
3231 3389 3.751518 ACGTGGGCTAAAGAAGAATGTT 58.248 40.909 0.00 0.00 0.00 2.71
3243 3401 5.426689 AGAAGAATGTTGAGGCTGTATCA 57.573 39.130 0.00 0.00 0.00 2.15
3256 3414 4.217118 AGGCTGTATCAAAGCAGAACAAAG 59.783 41.667 0.00 0.00 42.69 2.77
3563 3721 6.516718 AGAACATTATCCTATCGTGAACCTG 58.483 40.000 0.00 0.00 0.00 4.00
3672 3831 9.712305 GCTAATTTAGTAATGCCTCTCTTATCA 57.288 33.333 5.38 0.00 0.00 2.15
3722 3881 6.823182 TGTTGAAACATGTATGCTAGTATGCT 59.177 34.615 10.03 0.00 33.17 3.79
3723 3882 7.984617 TGTTGAAACATGTATGCTAGTATGCTA 59.015 33.333 10.03 0.00 33.17 3.49
3724 3883 7.946655 TGAAACATGTATGCTAGTATGCTAC 57.053 36.000 10.03 0.00 0.00 3.58
3725 3884 7.726216 TGAAACATGTATGCTAGTATGCTACT 58.274 34.615 10.03 2.19 42.68 2.57
3726 3885 7.867909 TGAAACATGTATGCTAGTATGCTACTC 59.132 37.037 10.03 1.83 40.14 2.59
3727 3886 6.274157 ACATGTATGCTAGTATGCTACTCC 57.726 41.667 10.03 0.00 40.14 3.85
3728 3887 5.186021 ACATGTATGCTAGTATGCTACTCCC 59.814 44.000 10.03 0.00 40.14 4.30
3729 3888 4.999310 TGTATGCTAGTATGCTACTCCCT 58.001 43.478 10.03 0.00 40.14 4.20
3730 3889 5.394738 TGTATGCTAGTATGCTACTCCCTT 58.605 41.667 10.03 0.00 40.14 3.95
3731 3890 4.881019 ATGCTAGTATGCTACTCCCTTG 57.119 45.455 0.00 0.00 40.14 3.61
3732 3891 3.643237 TGCTAGTATGCTACTCCCTTGT 58.357 45.455 0.00 0.00 40.14 3.16
3733 3892 3.637229 TGCTAGTATGCTACTCCCTTGTC 59.363 47.826 0.00 0.00 40.14 3.18
3734 3893 3.006003 GCTAGTATGCTACTCCCTTGTCC 59.994 52.174 0.00 0.00 40.14 4.02
3735 3894 2.399580 AGTATGCTACTCCCTTGTCCC 58.600 52.381 0.00 0.00 32.47 4.46
3736 3895 2.116238 GTATGCTACTCCCTTGTCCCA 58.884 52.381 0.00 0.00 0.00 4.37
3737 3896 1.898863 ATGCTACTCCCTTGTCCCAT 58.101 50.000 0.00 0.00 0.00 4.00
3738 3897 2.561209 TGCTACTCCCTTGTCCCATA 57.439 50.000 0.00 0.00 0.00 2.74
3739 3898 2.840511 TGCTACTCCCTTGTCCCATAA 58.159 47.619 0.00 0.00 0.00 1.90
3740 3899 3.393687 TGCTACTCCCTTGTCCCATAAT 58.606 45.455 0.00 0.00 0.00 1.28
3741 3900 4.562767 TGCTACTCCCTTGTCCCATAATA 58.437 43.478 0.00 0.00 0.00 0.98
3742 3901 5.162637 TGCTACTCCCTTGTCCCATAATAT 58.837 41.667 0.00 0.00 0.00 1.28
3743 3902 6.327781 TGCTACTCCCTTGTCCCATAATATA 58.672 40.000 0.00 0.00 0.00 0.86
3744 3903 6.790461 TGCTACTCCCTTGTCCCATAATATAA 59.210 38.462 0.00 0.00 0.00 0.98
3745 3904 7.038302 TGCTACTCCCTTGTCCCATAATATAAG 60.038 40.741 0.00 0.00 0.00 1.73
3746 3905 7.180408 GCTACTCCCTTGTCCCATAATATAAGA 59.820 40.741 0.00 0.00 0.00 2.10
3747 3906 7.947782 ACTCCCTTGTCCCATAATATAAGAA 57.052 36.000 0.00 0.00 0.00 2.52
3748 3907 7.746703 ACTCCCTTGTCCCATAATATAAGAAC 58.253 38.462 0.00 0.00 0.00 3.01
3749 3908 6.765403 TCCCTTGTCCCATAATATAAGAACG 58.235 40.000 0.00 0.00 0.00 3.95
3750 3909 6.328148 TCCCTTGTCCCATAATATAAGAACGT 59.672 38.462 0.00 0.00 0.00 3.99
3751 3910 6.996282 CCCTTGTCCCATAATATAAGAACGTT 59.004 38.462 0.00 0.00 0.00 3.99
3752 3911 7.501225 CCCTTGTCCCATAATATAAGAACGTTT 59.499 37.037 0.46 0.00 0.00 3.60
3753 3912 8.899771 CCTTGTCCCATAATATAAGAACGTTTT 58.100 33.333 0.46 0.00 0.00 2.43
3796 3955 9.632807 TCAAAAACATTCTTTTATTATGGGACG 57.367 29.630 0.00 0.00 0.00 4.79
3797 3956 8.868916 CAAAAACATTCTTTTATTATGGGACGG 58.131 33.333 0.00 0.00 0.00 4.79
3798 3957 7.948034 AAACATTCTTTTATTATGGGACGGA 57.052 32.000 0.00 0.00 0.00 4.69
3799 3958 7.568199 AACATTCTTTTATTATGGGACGGAG 57.432 36.000 0.00 0.00 0.00 4.63
3800 3959 6.062095 ACATTCTTTTATTATGGGACGGAGG 58.938 40.000 0.00 0.00 0.00 4.30
3801 3960 4.699925 TCTTTTATTATGGGACGGAGGG 57.300 45.455 0.00 0.00 0.00 4.30
3802 3961 4.300345 TCTTTTATTATGGGACGGAGGGA 58.700 43.478 0.00 0.00 0.00 4.20
3803 3962 4.347000 TCTTTTATTATGGGACGGAGGGAG 59.653 45.833 0.00 0.00 0.00 4.30
3836 3995 7.651704 GCAGTTAAATTTGTGAACCACTGTTAT 59.348 33.333 0.00 0.00 33.97 1.89
3917 4078 8.484575 CAGCATCATATAATCTACTCCCTGATT 58.515 37.037 0.00 0.00 36.87 2.57
3940 4159 4.404394 TCATAATAAGTGTCGCTGAGGGAA 59.596 41.667 0.00 0.00 0.00 3.97
4035 4258 7.048629 TGTGAAATTCCAAAAAGCTCACATA 57.951 32.000 0.00 0.00 37.40 2.29
4167 5236 2.169832 TCCAGCACTTAGTTCTGCAC 57.830 50.000 6.50 0.00 35.73 4.57
4203 5272 2.971307 TGCGCAAGTGTGATTCAGATA 58.029 42.857 8.16 0.00 41.68 1.98
4265 5338 2.027214 CACGATACGGTCTTTTACGTGC 59.973 50.000 0.00 0.00 43.93 5.34
4422 5501 4.720902 CCTCGCCACATGCCACCA 62.721 66.667 0.00 0.00 36.24 4.17
4431 5510 2.610976 CCACATGCCACCAATGTTCTTG 60.611 50.000 0.00 0.00 0.00 3.02
4434 5513 4.082081 CACATGCCACCAATGTTCTTGTAT 60.082 41.667 0.00 0.00 0.00 2.29
4439 5518 2.097466 CACCAATGTTCTTGTATCGGCC 59.903 50.000 0.00 0.00 0.00 6.13
4440 5519 1.676006 CCAATGTTCTTGTATCGGCCC 59.324 52.381 0.00 0.00 0.00 5.80
4441 5520 1.676006 CAATGTTCTTGTATCGGCCCC 59.324 52.381 0.00 0.00 0.00 5.80
4442 5521 1.213296 ATGTTCTTGTATCGGCCCCT 58.787 50.000 0.00 0.00 0.00 4.79
4443 5522 0.539986 TGTTCTTGTATCGGCCCCTC 59.460 55.000 0.00 0.00 0.00 4.30
4444 5523 0.179054 GTTCTTGTATCGGCCCCTCC 60.179 60.000 0.00 0.00 0.00 4.30
4453 5532 3.782443 GGCCCCTCCGATGACGTT 61.782 66.667 0.00 0.00 37.88 3.99
4454 5533 2.428925 GGCCCCTCCGATGACGTTA 61.429 63.158 0.00 0.00 37.88 3.18
4455 5534 1.067582 GCCCCTCCGATGACGTTAG 59.932 63.158 0.00 0.00 37.88 2.34
4456 5535 1.389609 GCCCCTCCGATGACGTTAGA 61.390 60.000 0.00 0.00 37.88 2.10
4457 5536 1.108776 CCCCTCCGATGACGTTAGAA 58.891 55.000 0.00 0.00 37.88 2.10
4458 5537 1.067212 CCCCTCCGATGACGTTAGAAG 59.933 57.143 0.00 0.00 37.88 2.85
4459 5538 1.536284 CCCTCCGATGACGTTAGAAGC 60.536 57.143 0.00 0.00 37.88 3.86
4460 5539 1.134367 CCTCCGATGACGTTAGAAGCA 59.866 52.381 0.00 0.00 37.88 3.91
4461 5540 2.186076 CTCCGATGACGTTAGAAGCAC 58.814 52.381 0.00 0.00 37.88 4.40
4462 5541 1.135199 TCCGATGACGTTAGAAGCACC 60.135 52.381 0.00 0.00 37.88 5.01
4463 5542 1.403647 CCGATGACGTTAGAAGCACCA 60.404 52.381 0.00 0.00 37.88 4.17
4464 5543 1.654105 CGATGACGTTAGAAGCACCAC 59.346 52.381 0.00 0.00 34.56 4.16
4465 5544 2.000447 GATGACGTTAGAAGCACCACC 59.000 52.381 0.00 0.00 0.00 4.61
4466 5545 0.319211 TGACGTTAGAAGCACCACCG 60.319 55.000 0.00 0.00 0.00 4.94
4467 5546 0.038892 GACGTTAGAAGCACCACCGA 60.039 55.000 0.00 0.00 0.00 4.69
4468 5547 0.038526 ACGTTAGAAGCACCACCGAG 60.039 55.000 0.00 0.00 0.00 4.63
4469 5548 0.242825 CGTTAGAAGCACCACCGAGA 59.757 55.000 0.00 0.00 0.00 4.04
4470 5549 1.711206 GTTAGAAGCACCACCGAGAC 58.289 55.000 0.00 0.00 0.00 3.36
4471 5550 1.000506 GTTAGAAGCACCACCGAGACA 59.999 52.381 0.00 0.00 0.00 3.41
4472 5551 1.334160 TAGAAGCACCACCGAGACAA 58.666 50.000 0.00 0.00 0.00 3.18
4473 5552 0.034059 AGAAGCACCACCGAGACAAG 59.966 55.000 0.00 0.00 0.00 3.16
4474 5553 0.951040 GAAGCACCACCGAGACAAGG 60.951 60.000 0.00 0.00 0.00 3.61
4475 5554 2.358737 GCACCACCGAGACAAGGG 60.359 66.667 0.00 0.00 0.00 3.95
4476 5555 2.358737 CACCACCGAGACAAGGGC 60.359 66.667 0.00 0.00 0.00 5.19
4477 5556 2.526873 ACCACCGAGACAAGGGCT 60.527 61.111 0.00 0.00 0.00 5.19
4478 5557 1.229082 ACCACCGAGACAAGGGCTA 60.229 57.895 0.00 0.00 0.00 3.93
4479 5558 0.617820 ACCACCGAGACAAGGGCTAT 60.618 55.000 0.00 0.00 0.00 2.97
4480 5559 0.179073 CCACCGAGACAAGGGCTATG 60.179 60.000 0.00 0.00 0.00 2.23
4481 5560 0.811616 CACCGAGACAAGGGCTATGC 60.812 60.000 0.00 0.00 0.00 3.14
4482 5561 1.592669 CCGAGACAAGGGCTATGCG 60.593 63.158 0.00 0.00 0.00 4.73
4483 5562 1.592669 CGAGACAAGGGCTATGCGG 60.593 63.158 0.00 0.00 0.00 5.69
4484 5563 1.227674 GAGACAAGGGCTATGCGGG 60.228 63.158 0.00 0.00 0.00 6.13
4485 5564 2.203209 GACAAGGGCTATGCGGGG 60.203 66.667 0.00 0.00 0.00 5.73
4486 5565 2.690881 ACAAGGGCTATGCGGGGA 60.691 61.111 0.00 0.00 0.00 4.81
4487 5566 2.265467 GACAAGGGCTATGCGGGGAA 62.265 60.000 0.00 0.00 0.00 3.97
4488 5567 1.077068 CAAGGGCTATGCGGGGAAA 60.077 57.895 0.00 0.00 0.00 3.13
4489 5568 0.682855 CAAGGGCTATGCGGGGAAAA 60.683 55.000 0.00 0.00 0.00 2.29
4490 5569 0.261696 AAGGGCTATGCGGGGAAAAT 59.738 50.000 0.00 0.00 0.00 1.82
4491 5570 0.178990 AGGGCTATGCGGGGAAAATC 60.179 55.000 0.00 0.00 0.00 2.17
4492 5571 0.178990 GGGCTATGCGGGGAAAATCT 60.179 55.000 0.00 0.00 0.00 2.40
4493 5572 1.692411 GGCTATGCGGGGAAAATCTT 58.308 50.000 0.00 0.00 0.00 2.40
4494 5573 2.488347 GGGCTATGCGGGGAAAATCTTA 60.488 50.000 0.00 0.00 0.00 2.10
4495 5574 3.421844 GGCTATGCGGGGAAAATCTTAT 58.578 45.455 0.00 0.00 0.00 1.73
4496 5575 3.826729 GGCTATGCGGGGAAAATCTTATT 59.173 43.478 0.00 0.00 0.00 1.40
4497 5576 4.082733 GGCTATGCGGGGAAAATCTTATTC 60.083 45.833 0.00 0.00 0.00 1.75
4498 5577 4.082733 GCTATGCGGGGAAAATCTTATTCC 60.083 45.833 0.00 0.00 44.61 3.01
4499 5578 3.374042 TGCGGGGAAAATCTTATTCCA 57.626 42.857 7.53 0.00 46.69 3.53
4500 5579 3.702792 TGCGGGGAAAATCTTATTCCAA 58.297 40.909 7.53 0.00 46.69 3.53
4501 5580 3.445805 TGCGGGGAAAATCTTATTCCAAC 59.554 43.478 7.53 0.00 46.69 3.77
4502 5581 3.699538 GCGGGGAAAATCTTATTCCAACT 59.300 43.478 7.53 0.00 46.69 3.16
4503 5582 4.159693 GCGGGGAAAATCTTATTCCAACTT 59.840 41.667 7.53 0.00 46.69 2.66
4504 5583 5.678871 GCGGGGAAAATCTTATTCCAACTTC 60.679 44.000 7.53 0.00 46.69 3.01
4505 5584 5.417580 CGGGGAAAATCTTATTCCAACTTCA 59.582 40.000 7.53 0.00 46.69 3.02
4506 5585 6.404734 CGGGGAAAATCTTATTCCAACTTCAG 60.405 42.308 7.53 0.00 46.69 3.02
4507 5586 6.663523 GGGGAAAATCTTATTCCAACTTCAGA 59.336 38.462 7.53 0.00 46.69 3.27
4508 5587 7.148000 GGGGAAAATCTTATTCCAACTTCAGAG 60.148 40.741 7.53 0.00 46.69 3.35
4509 5588 7.611855 GGGAAAATCTTATTCCAACTTCAGAGA 59.388 37.037 7.53 0.00 46.69 3.10
4510 5589 8.672815 GGAAAATCTTATTCCAACTTCAGAGAG 58.327 37.037 0.56 0.00 44.70 3.20
4511 5590 7.622893 AAATCTTATTCCAACTTCAGAGAGC 57.377 36.000 0.00 0.00 0.00 4.09
4512 5591 5.091261 TCTTATTCCAACTTCAGAGAGCC 57.909 43.478 0.00 0.00 0.00 4.70
4513 5592 2.393271 ATTCCAACTTCAGAGAGCCG 57.607 50.000 0.00 0.00 0.00 5.52
4514 5593 0.320771 TTCCAACTTCAGAGAGCCGC 60.321 55.000 0.00 0.00 0.00 6.53
4515 5594 1.188219 TCCAACTTCAGAGAGCCGCT 61.188 55.000 0.00 0.00 0.00 5.52
4516 5595 1.018226 CCAACTTCAGAGAGCCGCTG 61.018 60.000 0.00 0.60 32.70 5.18
4517 5596 0.037882 CAACTTCAGAGAGCCGCTGA 60.038 55.000 0.00 4.90 38.43 4.26
4518 5597 0.037790 AACTTCAGAGAGCCGCTGAC 60.038 55.000 0.00 0.00 39.76 3.51
4519 5598 0.897863 ACTTCAGAGAGCCGCTGACT 60.898 55.000 0.00 0.00 39.76 3.41
4520 5599 0.246086 CTTCAGAGAGCCGCTGACTT 59.754 55.000 0.00 0.00 39.76 3.01
4521 5600 0.244994 TTCAGAGAGCCGCTGACTTC 59.755 55.000 0.00 0.00 39.76 3.01
4522 5601 0.610509 TCAGAGAGCCGCTGACTTCT 60.611 55.000 0.00 0.00 35.54 2.85
4523 5602 1.098869 CAGAGAGCCGCTGACTTCTA 58.901 55.000 0.00 0.00 33.20 2.10
4524 5603 1.099689 AGAGAGCCGCTGACTTCTAC 58.900 55.000 0.00 0.00 0.00 2.59
4525 5604 1.099689 GAGAGCCGCTGACTTCTACT 58.900 55.000 0.00 0.00 0.00 2.57
4526 5605 1.064952 GAGAGCCGCTGACTTCTACTC 59.935 57.143 0.00 0.00 0.00 2.59
4527 5606 0.101579 GAGCCGCTGACTTCTACTCC 59.898 60.000 0.00 0.00 0.00 3.85
4528 5607 1.142097 GCCGCTGACTTCTACTCCC 59.858 63.158 0.00 0.00 0.00 4.30
4529 5608 1.324005 GCCGCTGACTTCTACTCCCT 61.324 60.000 0.00 0.00 0.00 4.20
4530 5609 0.741915 CCGCTGACTTCTACTCCCTC 59.258 60.000 0.00 0.00 0.00 4.30
4531 5610 0.741915 CGCTGACTTCTACTCCCTCC 59.258 60.000 0.00 0.00 0.00 4.30
4532 5611 0.741915 GCTGACTTCTACTCCCTCCG 59.258 60.000 0.00 0.00 0.00 4.63
4533 5612 1.956159 GCTGACTTCTACTCCCTCCGT 60.956 57.143 0.00 0.00 0.00 4.69
4534 5613 2.448453 CTGACTTCTACTCCCTCCGTT 58.552 52.381 0.00 0.00 0.00 4.44
4535 5614 2.424246 CTGACTTCTACTCCCTCCGTTC 59.576 54.545 0.00 0.00 0.00 3.95
4536 5615 1.750206 GACTTCTACTCCCTCCGTTCC 59.250 57.143 0.00 0.00 0.00 3.62
4537 5616 1.358445 ACTTCTACTCCCTCCGTTCCT 59.642 52.381 0.00 0.00 0.00 3.36
4538 5617 2.579860 ACTTCTACTCCCTCCGTTCCTA 59.420 50.000 0.00 0.00 0.00 2.94
4539 5618 3.011032 ACTTCTACTCCCTCCGTTCCTAA 59.989 47.826 0.00 0.00 0.00 2.69
4540 5619 3.744940 TCTACTCCCTCCGTTCCTAAA 57.255 47.619 0.00 0.00 0.00 1.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 4.715713 ACTACTTTGAGAAAGACAACCCC 58.284 43.478 3.11 0.00 41.02 4.95
18 19 6.494666 TCTTTGGAAGGACTACTTTGAGAA 57.505 37.500 0.00 0.00 40.21 2.87
90 96 1.198094 TTGTTCCTGGGCTCGATCCA 61.198 55.000 7.74 7.50 0.00 3.41
102 108 0.823356 ATGCAGCGGTTGTTGTTCCT 60.823 50.000 0.00 0.00 0.00 3.36
111 117 2.297701 CCACCTTAATATGCAGCGGTT 58.702 47.619 0.00 0.00 0.00 4.44
112 118 1.211949 ACCACCTTAATATGCAGCGGT 59.788 47.619 0.00 0.00 0.00 5.68
182 188 5.413833 CCACAATTTTCTGTGCTACTCTGAT 59.586 40.000 0.00 0.00 44.47 2.90
190 196 5.976458 TCTTTTTCCACAATTTTCTGTGCT 58.024 33.333 0.00 0.00 44.47 4.40
194 200 6.751888 ACGAGTTCTTTTTCCACAATTTTCTG 59.248 34.615 0.00 0.00 0.00 3.02
248 254 2.473984 CCCGTAAGTTGTTCGACAGTTC 59.526 50.000 0.00 0.00 0.00 3.01
273 279 1.289066 CCGACCAGCTTCTTCGACA 59.711 57.895 9.43 0.00 34.62 4.35
364 389 1.002624 GAGCACGAAATCACCCCCA 60.003 57.895 0.00 0.00 0.00 4.96
383 411 4.619227 CCACCCCGACGTTGCTGT 62.619 66.667 0.00 0.00 0.00 4.40
405 436 1.518903 GAGCCACTGTTGCTTCCCAC 61.519 60.000 7.87 0.00 39.69 4.61
406 437 1.228245 GAGCCACTGTTGCTTCCCA 60.228 57.895 7.87 0.00 39.69 4.37
407 438 1.228245 TGAGCCACTGTTGCTTCCC 60.228 57.895 7.87 0.00 39.69 3.97
431 463 2.280524 TCGTTTCCAGCACCACCG 60.281 61.111 0.00 0.00 0.00 4.94
434 466 1.885388 CACGTCGTTTCCAGCACCA 60.885 57.895 0.00 0.00 0.00 4.17
439 471 0.320421 ACATCCCACGTCGTTTCCAG 60.320 55.000 0.00 0.00 0.00 3.86
443 475 1.964373 GCCACATCCCACGTCGTTT 60.964 57.895 0.00 0.00 0.00 3.60
488 520 2.527624 TGTCCCAGCCAGCAGTCT 60.528 61.111 0.00 0.00 0.00 3.24
499 531 3.246112 CCCAGTTCCGGTGTCCCA 61.246 66.667 0.00 0.00 0.00 4.37
517 549 2.682494 ACCCCGTCACTACCGCAT 60.682 61.111 0.00 0.00 0.00 4.73
541 574 2.172483 ATTCGACAGCAAGCCCTCGT 62.172 55.000 8.31 0.00 0.00 4.18
559 592 2.293452 TGGCCATTATTTTCCACCCCAT 60.293 45.455 0.00 0.00 0.00 4.00
560 593 1.079490 TGGCCATTATTTTCCACCCCA 59.921 47.619 0.00 0.00 0.00 4.96
631 664 1.606668 TGGTGCAGAAACGAAATGGTC 59.393 47.619 0.00 0.00 0.00 4.02
632 665 1.686355 TGGTGCAGAAACGAAATGGT 58.314 45.000 0.00 0.00 0.00 3.55
642 683 2.076100 CTCATTAGCGTTGGTGCAGAA 58.924 47.619 0.00 0.00 37.31 3.02
645 686 0.036164 ACCTCATTAGCGTTGGTGCA 59.964 50.000 0.00 0.00 37.31 4.57
648 689 1.274167 TCGAACCTCATTAGCGTTGGT 59.726 47.619 0.00 0.00 0.00 3.67
656 697 3.963129 AGCCCAAATTCGAACCTCATTA 58.037 40.909 0.00 0.00 0.00 1.90
664 705 6.036735 CGACTTATTTCTAGCCCAAATTCGAA 59.963 38.462 0.00 0.00 28.82 3.71
667 708 5.505819 GCCGACTTATTTCTAGCCCAAATTC 60.506 44.000 0.00 0.00 0.00 2.17
694 735 0.656205 CGTGTTCGCTTTTTGTCCGG 60.656 55.000 0.00 0.00 0.00 5.14
711 752 2.660552 CGACCCAAACAGACGCGT 60.661 61.111 13.85 13.85 0.00 6.01
718 759 1.459455 CCAATGTGCCGACCCAAACA 61.459 55.000 0.00 0.00 0.00 2.83
731 772 2.604139 ACGGAAAAATGGTCCCAATGT 58.396 42.857 0.00 0.00 0.00 2.71
733 774 2.230266 CGAACGGAAAAATGGTCCCAAT 59.770 45.455 0.00 0.00 0.00 3.16
739 780 1.335496 CACCACGAACGGAAAAATGGT 59.665 47.619 0.00 0.00 41.11 3.55
741 782 3.488489 GATCACCACGAACGGAAAAATG 58.512 45.455 0.00 0.00 0.00 2.32
743 784 1.874872 GGATCACCACGAACGGAAAAA 59.125 47.619 0.00 0.00 35.97 1.94
749 790 0.162933 CGTTTGGATCACCACGAACG 59.837 55.000 10.33 10.33 46.45 3.95
752 793 2.051105 TCCGTTTGGATCACCACGA 58.949 52.632 10.42 0.00 46.80 4.35
771 812 2.033448 ATTTGGTTCGGGCGCTCA 59.967 55.556 8.62 0.00 0.00 4.26
773 814 0.965363 ATTCATTTGGTTCGGGCGCT 60.965 50.000 7.64 0.00 0.00 5.92
778 819 6.920758 TGTTCTGTTTTATTCATTTGGTTCGG 59.079 34.615 0.00 0.00 0.00 4.30
779 820 7.647715 ACTGTTCTGTTTTATTCATTTGGTTCG 59.352 33.333 0.00 0.00 0.00 3.95
780 821 8.871686 ACTGTTCTGTTTTATTCATTTGGTTC 57.128 30.769 0.00 0.00 0.00 3.62
781 822 9.965824 CTACTGTTCTGTTTTATTCATTTGGTT 57.034 29.630 0.00 0.00 0.00 3.67
782 823 9.349713 TCTACTGTTCTGTTTTATTCATTTGGT 57.650 29.630 0.00 0.00 0.00 3.67
787 828 8.495949 CGTGTTCTACTGTTCTGTTTTATTCAT 58.504 33.333 0.00 0.00 0.00 2.57
788 829 7.707464 TCGTGTTCTACTGTTCTGTTTTATTCA 59.293 33.333 0.00 0.00 0.00 2.57
789 830 8.068893 TCGTGTTCTACTGTTCTGTTTTATTC 57.931 34.615 0.00 0.00 0.00 1.75
790 831 7.709613 ACTCGTGTTCTACTGTTCTGTTTTATT 59.290 33.333 0.00 0.00 0.00 1.40
791 832 7.169308 CACTCGTGTTCTACTGTTCTGTTTTAT 59.831 37.037 0.00 0.00 0.00 1.40
792 833 6.474427 CACTCGTGTTCTACTGTTCTGTTTTA 59.526 38.462 0.00 0.00 0.00 1.52
793 834 5.291128 CACTCGTGTTCTACTGTTCTGTTTT 59.709 40.000 0.00 0.00 0.00 2.43
794 835 4.804139 CACTCGTGTTCTACTGTTCTGTTT 59.196 41.667 0.00 0.00 0.00 2.83
795 836 4.360563 CACTCGTGTTCTACTGTTCTGTT 58.639 43.478 0.00 0.00 0.00 3.16
796 837 3.795826 GCACTCGTGTTCTACTGTTCTGT 60.796 47.826 0.00 0.00 0.00 3.41
797 838 2.726760 GCACTCGTGTTCTACTGTTCTG 59.273 50.000 0.00 0.00 0.00 3.02
798 839 2.623889 AGCACTCGTGTTCTACTGTTCT 59.376 45.455 0.00 0.00 0.00 3.01
799 840 2.726760 CAGCACTCGTGTTCTACTGTTC 59.273 50.000 0.00 0.00 0.00 3.18
800 841 2.361119 TCAGCACTCGTGTTCTACTGTT 59.639 45.455 0.00 0.00 0.00 3.16
801 842 1.954382 TCAGCACTCGTGTTCTACTGT 59.046 47.619 0.00 0.00 0.00 3.55
802 843 2.706555 TCAGCACTCGTGTTCTACTG 57.293 50.000 0.00 0.00 0.00 2.74
803 844 2.885266 TCTTCAGCACTCGTGTTCTACT 59.115 45.455 0.00 0.00 0.00 2.57
804 845 3.058155 TCTCTTCAGCACTCGTGTTCTAC 60.058 47.826 0.00 0.00 0.00 2.59
805 846 3.146847 TCTCTTCAGCACTCGTGTTCTA 58.853 45.455 0.00 0.00 0.00 2.10
806 847 1.957177 TCTCTTCAGCACTCGTGTTCT 59.043 47.619 0.00 0.00 0.00 3.01
807 848 2.423926 TCTCTTCAGCACTCGTGTTC 57.576 50.000 0.00 0.00 0.00 3.18
808 849 2.036475 ACATCTCTTCAGCACTCGTGTT 59.964 45.455 0.00 0.00 0.00 3.32
809 850 1.615883 ACATCTCTTCAGCACTCGTGT 59.384 47.619 0.00 0.00 0.00 4.49
810 851 1.991264 CACATCTCTTCAGCACTCGTG 59.009 52.381 0.00 0.00 0.00 4.35
811 852 1.671261 GCACATCTCTTCAGCACTCGT 60.671 52.381 0.00 0.00 0.00 4.18
812 853 0.997932 GCACATCTCTTCAGCACTCG 59.002 55.000 0.00 0.00 0.00 4.18
813 854 1.367659 GGCACATCTCTTCAGCACTC 58.632 55.000 0.00 0.00 0.00 3.51
814 855 0.035630 GGGCACATCTCTTCAGCACT 60.036 55.000 0.00 0.00 0.00 4.40
815 856 0.321919 TGGGCACATCTCTTCAGCAC 60.322 55.000 0.00 0.00 0.00 4.40
816 857 0.035725 CTGGGCACATCTCTTCAGCA 60.036 55.000 0.00 0.00 0.00 4.41
817 858 0.035630 ACTGGGCACATCTCTTCAGC 60.036 55.000 0.00 0.00 0.00 4.26
818 859 1.406614 GGACTGGGCACATCTCTTCAG 60.407 57.143 0.00 0.00 0.00 3.02
819 860 0.615331 GGACTGGGCACATCTCTTCA 59.385 55.000 0.00 0.00 0.00 3.02
820 861 0.107459 GGGACTGGGCACATCTCTTC 60.107 60.000 0.00 0.00 0.00 2.87
821 862 0.842030 TGGGACTGGGCACATCTCTT 60.842 55.000 0.00 0.00 0.00 2.85
822 863 0.622738 ATGGGACTGGGCACATCTCT 60.623 55.000 0.00 0.00 0.00 3.10
823 864 0.179034 GATGGGACTGGGCACATCTC 60.179 60.000 11.11 0.00 43.67 2.75
824 865 0.915872 TGATGGGACTGGGCACATCT 60.916 55.000 18.09 0.00 46.43 2.90
825 866 0.465097 CTGATGGGACTGGGCACATC 60.465 60.000 11.44 11.44 46.47 3.06
826 867 1.210204 ACTGATGGGACTGGGCACAT 61.210 55.000 0.00 0.00 33.82 3.21
827 868 0.546507 TACTGATGGGACTGGGCACA 60.547 55.000 0.00 0.00 0.00 4.57
828 869 0.179000 CTACTGATGGGACTGGGCAC 59.821 60.000 0.00 0.00 0.00 5.01
829 870 1.626356 GCTACTGATGGGACTGGGCA 61.626 60.000 0.00 0.00 0.00 5.36
830 871 1.147153 GCTACTGATGGGACTGGGC 59.853 63.158 0.00 0.00 0.00 5.36
831 872 0.467384 CTGCTACTGATGGGACTGGG 59.533 60.000 0.00 0.00 0.00 4.45
832 873 1.411977 CTCTGCTACTGATGGGACTGG 59.588 57.143 0.00 0.00 0.00 4.00
833 874 1.202510 GCTCTGCTACTGATGGGACTG 60.203 57.143 0.00 0.00 0.00 3.51
834 875 1.118838 GCTCTGCTACTGATGGGACT 58.881 55.000 0.00 0.00 0.00 3.85
835 876 0.105778 GGCTCTGCTACTGATGGGAC 59.894 60.000 0.00 0.00 0.00 4.46
836 877 0.325577 TGGCTCTGCTACTGATGGGA 60.326 55.000 0.00 0.00 0.00 4.37
837 878 0.763652 ATGGCTCTGCTACTGATGGG 59.236 55.000 0.00 0.00 0.00 4.00
838 879 1.415289 TGATGGCTCTGCTACTGATGG 59.585 52.381 0.00 0.00 0.00 3.51
839 880 2.904697 TGATGGCTCTGCTACTGATG 57.095 50.000 0.00 0.00 0.00 3.07
840 881 2.029200 CGATGATGGCTCTGCTACTGAT 60.029 50.000 0.00 0.00 0.00 2.90
841 882 1.339291 CGATGATGGCTCTGCTACTGA 59.661 52.381 0.00 0.00 0.00 3.41
842 883 1.604947 CCGATGATGGCTCTGCTACTG 60.605 57.143 0.00 0.00 0.00 2.74
843 884 0.678395 CCGATGATGGCTCTGCTACT 59.322 55.000 0.00 0.00 0.00 2.57
844 885 0.320247 CCCGATGATGGCTCTGCTAC 60.320 60.000 0.00 0.00 0.00 3.58
845 886 1.475169 CCCCGATGATGGCTCTGCTA 61.475 60.000 0.00 0.00 0.00 3.49
846 887 2.815945 CCCCGATGATGGCTCTGCT 61.816 63.158 0.00 0.00 0.00 4.24
847 888 2.281345 CCCCGATGATGGCTCTGC 60.281 66.667 0.00 0.00 0.00 4.26
848 889 2.281345 GCCCCGATGATGGCTCTG 60.281 66.667 0.00 0.00 44.46 3.35
872 913 3.655276 TGTCTAAAACGACCCTCTGTC 57.345 47.619 0.00 0.00 40.81 3.51
873 914 4.411256 TTTGTCTAAAACGACCCTCTGT 57.589 40.909 0.00 0.00 32.97 3.41
874 915 4.091509 CGATTTGTCTAAAACGACCCTCTG 59.908 45.833 0.00 0.00 42.47 3.35
875 916 4.243270 CGATTTGTCTAAAACGACCCTCT 58.757 43.478 0.00 0.00 42.47 3.69
876 917 3.181523 GCGATTTGTCTAAAACGACCCTC 60.182 47.826 6.61 0.00 42.47 4.30
877 918 2.740447 GCGATTTGTCTAAAACGACCCT 59.260 45.455 6.61 0.00 42.47 4.34
878 919 2.740447 AGCGATTTGTCTAAAACGACCC 59.260 45.455 6.61 0.00 42.47 4.46
879 920 3.181523 GGAGCGATTTGTCTAAAACGACC 60.182 47.826 6.61 5.43 42.47 4.79
880 921 3.678548 AGGAGCGATTTGTCTAAAACGAC 59.321 43.478 6.61 0.00 42.47 4.34
881 922 3.921677 AGGAGCGATTTGTCTAAAACGA 58.078 40.909 6.61 0.00 42.47 3.85
882 923 4.863131 AGTAGGAGCGATTTGTCTAAAACG 59.137 41.667 0.00 0.00 42.66 3.60
883 924 5.867716 TGAGTAGGAGCGATTTGTCTAAAAC 59.132 40.000 0.00 0.00 0.00 2.43
884 925 6.032956 TGAGTAGGAGCGATTTGTCTAAAA 57.967 37.500 0.00 0.00 0.00 1.52
885 926 5.417894 TCTGAGTAGGAGCGATTTGTCTAAA 59.582 40.000 0.00 0.00 0.00 1.85
886 927 4.948004 TCTGAGTAGGAGCGATTTGTCTAA 59.052 41.667 0.00 0.00 0.00 2.10
887 928 4.524053 TCTGAGTAGGAGCGATTTGTCTA 58.476 43.478 0.00 0.00 0.00 2.59
888 929 3.357203 TCTGAGTAGGAGCGATTTGTCT 58.643 45.455 0.00 0.00 0.00 3.41
889 930 3.784701 TCTGAGTAGGAGCGATTTGTC 57.215 47.619 0.00 0.00 0.00 3.18
890 931 4.246458 GTTTCTGAGTAGGAGCGATTTGT 58.754 43.478 0.00 0.00 0.00 2.83
891 932 3.619038 GGTTTCTGAGTAGGAGCGATTTG 59.381 47.826 0.00 0.00 0.00 2.32
892 933 3.369576 GGGTTTCTGAGTAGGAGCGATTT 60.370 47.826 0.00 0.00 0.00 2.17
893 934 2.168728 GGGTTTCTGAGTAGGAGCGATT 59.831 50.000 0.00 0.00 0.00 3.34
894 935 1.757699 GGGTTTCTGAGTAGGAGCGAT 59.242 52.381 0.00 0.00 0.00 4.58
919 960 2.224892 GGAGGAATTAGGGAATCTGGGC 60.225 54.545 0.00 0.00 0.00 5.36
920 961 3.329225 GAGGAGGAATTAGGGAATCTGGG 59.671 52.174 0.00 0.00 0.00 4.45
921 962 3.007398 CGAGGAGGAATTAGGGAATCTGG 59.993 52.174 0.00 0.00 0.00 3.86
922 963 3.898123 TCGAGGAGGAATTAGGGAATCTG 59.102 47.826 0.00 0.00 0.00 2.90
923 964 3.898741 GTCGAGGAGGAATTAGGGAATCT 59.101 47.826 0.00 0.00 0.00 2.40
924 965 3.007074 GGTCGAGGAGGAATTAGGGAATC 59.993 52.174 0.00 0.00 0.00 2.52
925 966 2.973406 GGTCGAGGAGGAATTAGGGAAT 59.027 50.000 0.00 0.00 0.00 3.01
931 972 2.840640 TGGAGGTCGAGGAGGAATTA 57.159 50.000 0.00 0.00 0.00 1.40
956 997 2.478746 CGCGTTGGTTGGATTCCG 59.521 61.111 0.00 0.00 0.00 4.30
1239 1280 4.779733 TCGGTGGGAGAGAGGGCC 62.780 72.222 0.00 0.00 0.00 5.80
1336 1377 3.668191 CGATTTCCAATCAAAACACCGTG 59.332 43.478 0.00 0.00 0.00 4.94
1349 1390 3.969117 GCACAGATATGCGATTTCCAA 57.031 42.857 0.00 0.00 35.50 3.53
1359 1400 1.306148 CCACAGCAGGCACAGATATG 58.694 55.000 0.00 0.00 0.00 1.78
1364 1405 1.228063 AAGACCACAGCAGGCACAG 60.228 57.895 0.00 0.00 0.00 3.66
1375 1416 1.641577 GACGATACAGGCAAGACCAC 58.358 55.000 0.00 0.00 43.14 4.16
1377 1418 0.172803 ACGACGATACAGGCAAGACC 59.827 55.000 0.00 0.00 39.61 3.85
1410 1451 5.344743 TCTGTACATCACCAAATCTCTCC 57.655 43.478 0.00 0.00 0.00 3.71
1476 1522 6.018669 CGTATCTTCTTCCTACCAATTTCAGC 60.019 42.308 0.00 0.00 0.00 4.26
1642 1691 7.242359 TCCCTTTGGTCATATGGAACTTTAAA 58.758 34.615 2.13 0.00 33.02 1.52
1643 1692 6.795590 TCCCTTTGGTCATATGGAACTTTAA 58.204 36.000 2.13 0.00 33.02 1.52
1724 1773 5.117592 GCAGTGAGAAATTTCCATTTGTTCG 59.882 40.000 14.61 0.11 32.35 3.95
1738 1787 9.677567 GACAAAACATAATTAAGCAGTGAGAAA 57.322 29.630 0.00 0.00 0.00 2.52
1782 1831 9.998106 AACTCTTGCTTGAACTTCTTAGTTATA 57.002 29.630 0.00 0.00 44.51 0.98
1794 1843 4.746611 CCAATTGGAAACTCTTGCTTGAAC 59.253 41.667 20.50 0.00 37.39 3.18
1836 1885 7.275183 TCATACATACAAAACAGATGGAGGAG 58.725 38.462 0.00 0.00 0.00 3.69
1937 1986 4.589908 ACAGGCCGATAAGAGAAACAATT 58.410 39.130 0.00 0.00 0.00 2.32
2025 2085 2.805671 TCCACTGAATACAACAGTTGCG 59.194 45.455 13.56 0.00 44.69 4.85
2090 2150 3.228188 AGAGACCTGTTGAATTTGGCA 57.772 42.857 0.00 0.00 0.00 4.92
2117 2177 9.967451 TTAGGTGTAAATCAAGGATGATACAAA 57.033 29.630 6.67 0.00 45.60 2.83
2120 2180 9.614792 AACTTAGGTGTAAATCAAGGATGATAC 57.385 33.333 0.00 0.00 45.60 2.24
2166 2235 6.000246 TGAATGGCACCATAAACTCTATGA 58.000 37.500 1.81 0.00 35.31 2.15
2951 3105 6.346598 CCTGAACGTATGTAACAACAAGAGTG 60.347 42.308 0.00 0.00 0.00 3.51
2952 3106 5.694910 CCTGAACGTATGTAACAACAAGAGT 59.305 40.000 0.00 0.00 0.00 3.24
2953 3107 5.694910 ACCTGAACGTATGTAACAACAAGAG 59.305 40.000 0.00 0.00 0.00 2.85
2954 3108 5.603596 ACCTGAACGTATGTAACAACAAGA 58.396 37.500 0.00 0.00 0.00 3.02
2955 3109 5.917541 ACCTGAACGTATGTAACAACAAG 57.082 39.130 0.00 0.00 0.00 3.16
3000 3154 2.224079 CACCTCCACACATCACTTTTCG 59.776 50.000 0.00 0.00 0.00 3.46
3065 3219 8.488651 AGTACGAAGTGGATTTATTTTGGTAG 57.511 34.615 0.00 0.00 45.73 3.18
3231 3389 3.244526 TGTTCTGCTTTGATACAGCCTCA 60.245 43.478 0.00 0.00 36.33 3.86
3243 3401 3.251004 CCTCTAACGCTTTGTTCTGCTTT 59.749 43.478 0.00 0.00 42.09 3.51
3256 3414 3.127030 CCATGTTTTCCTTCCTCTAACGC 59.873 47.826 0.00 0.00 0.00 4.84
3294 3452 1.209747 ACCTCTTCCTGGTATTTCGCC 59.790 52.381 0.00 0.00 35.80 5.54
3563 3721 2.975851 CAGACAATTTCAAGCACGAAGC 59.024 45.455 0.00 0.00 46.19 3.86
3770 3929 9.632807 CGTCCCATAATAAAAGAATGTTTTTGA 57.367 29.630 0.00 0.00 0.00 2.69
3771 3930 8.868916 CCGTCCCATAATAAAAGAATGTTTTTG 58.131 33.333 0.00 0.00 0.00 2.44
3772 3931 8.808092 TCCGTCCCATAATAAAAGAATGTTTTT 58.192 29.630 0.00 0.00 0.00 1.94
3773 3932 8.356000 TCCGTCCCATAATAAAAGAATGTTTT 57.644 30.769 0.00 0.00 0.00 2.43
3774 3933 7.068226 CCTCCGTCCCATAATAAAAGAATGTTT 59.932 37.037 0.00 0.00 0.00 2.83
3775 3934 6.546034 CCTCCGTCCCATAATAAAAGAATGTT 59.454 38.462 0.00 0.00 0.00 2.71
3776 3935 6.062095 CCTCCGTCCCATAATAAAAGAATGT 58.938 40.000 0.00 0.00 0.00 2.71
3777 3936 5.473504 CCCTCCGTCCCATAATAAAAGAATG 59.526 44.000 0.00 0.00 0.00 2.67
3778 3937 5.371472 TCCCTCCGTCCCATAATAAAAGAAT 59.629 40.000 0.00 0.00 0.00 2.40
3779 3938 4.722781 TCCCTCCGTCCCATAATAAAAGAA 59.277 41.667 0.00 0.00 0.00 2.52
3780 3939 4.300345 TCCCTCCGTCCCATAATAAAAGA 58.700 43.478 0.00 0.00 0.00 2.52
3781 3940 4.102681 ACTCCCTCCGTCCCATAATAAAAG 59.897 45.833 0.00 0.00 0.00 2.27
3782 3941 4.042174 ACTCCCTCCGTCCCATAATAAAA 58.958 43.478 0.00 0.00 0.00 1.52
3783 3942 3.660959 ACTCCCTCCGTCCCATAATAAA 58.339 45.455 0.00 0.00 0.00 1.40
3784 3943 3.339713 ACTCCCTCCGTCCCATAATAA 57.660 47.619 0.00 0.00 0.00 1.40
3785 3944 3.400322 ACTACTCCCTCCGTCCCATAATA 59.600 47.826 0.00 0.00 0.00 0.98
3786 3945 2.179424 ACTACTCCCTCCGTCCCATAAT 59.821 50.000 0.00 0.00 0.00 1.28
3787 3946 1.572415 ACTACTCCCTCCGTCCCATAA 59.428 52.381 0.00 0.00 0.00 1.90
3788 3947 1.229131 ACTACTCCCTCCGTCCCATA 58.771 55.000 0.00 0.00 0.00 2.74
3789 3948 1.133544 GTACTACTCCCTCCGTCCCAT 60.134 57.143 0.00 0.00 0.00 4.00
3790 3949 0.257039 GTACTACTCCCTCCGTCCCA 59.743 60.000 0.00 0.00 0.00 4.37
3791 3950 0.817229 CGTACTACTCCCTCCGTCCC 60.817 65.000 0.00 0.00 0.00 4.46
3792 3951 1.443322 GCGTACTACTCCCTCCGTCC 61.443 65.000 0.00 0.00 0.00 4.79
3793 3952 0.745845 TGCGTACTACTCCCTCCGTC 60.746 60.000 0.00 0.00 0.00 4.79
3794 3953 0.747283 CTGCGTACTACTCCCTCCGT 60.747 60.000 0.00 0.00 0.00 4.69
3795 3954 0.747283 ACTGCGTACTACTCCCTCCG 60.747 60.000 0.00 0.00 0.00 4.63
3796 3955 1.472188 AACTGCGTACTACTCCCTCC 58.528 55.000 0.00 0.00 0.00 4.30
3797 3956 4.708726 TTTAACTGCGTACTACTCCCTC 57.291 45.455 0.00 0.00 0.00 4.30
3798 3957 5.672421 AATTTAACTGCGTACTACTCCCT 57.328 39.130 0.00 0.00 0.00 4.20
3799 3958 5.640783 ACAAATTTAACTGCGTACTACTCCC 59.359 40.000 0.00 0.00 0.00 4.30
3800 3959 6.366877 TCACAAATTTAACTGCGTACTACTCC 59.633 38.462 0.00 0.00 0.00 3.85
3801 3960 7.342318 TCACAAATTTAACTGCGTACTACTC 57.658 36.000 0.00 0.00 0.00 2.59
3802 3961 7.307573 GGTTCACAAATTTAACTGCGTACTACT 60.308 37.037 0.00 0.00 0.00 2.57
3803 3962 6.793680 GGTTCACAAATTTAACTGCGTACTAC 59.206 38.462 0.00 0.00 0.00 2.73
3836 3995 4.617253 ACATTAGAACAGTGCACCACTA 57.383 40.909 14.63 9.26 43.43 2.74
3874 4033 3.002791 TGCTGAATGACTAAGCGGAAAG 58.997 45.455 0.00 0.00 39.88 2.62
3917 4078 3.958147 TCCCTCAGCGACACTTATTATGA 59.042 43.478 0.00 0.00 0.00 2.15
4167 5236 4.044336 TGCGCATGGGAAAATTAATCAG 57.956 40.909 14.90 0.00 0.00 2.90
4383 5462 6.644347 AGGTTCTACAAGATCGACATGAAAT 58.356 36.000 0.00 0.00 0.00 2.17
4422 5501 1.564348 AGGGGCCGATACAAGAACATT 59.436 47.619 0.00 0.00 0.00 2.71
4439 5518 1.536284 GCTTCTAACGTCATCGGAGGG 60.536 57.143 0.00 0.00 41.85 4.30
4440 5519 1.134367 TGCTTCTAACGTCATCGGAGG 59.866 52.381 0.00 0.00 41.85 4.30
4441 5520 2.186076 GTGCTTCTAACGTCATCGGAG 58.814 52.381 0.00 0.00 41.85 4.63
4442 5521 1.135199 GGTGCTTCTAACGTCATCGGA 60.135 52.381 0.00 0.00 41.85 4.55
4443 5522 1.278238 GGTGCTTCTAACGTCATCGG 58.722 55.000 0.00 0.00 41.85 4.18
4444 5523 1.654105 GTGGTGCTTCTAACGTCATCG 59.346 52.381 0.00 0.00 43.34 3.84
4445 5524 2.000447 GGTGGTGCTTCTAACGTCATC 59.000 52.381 0.00 0.00 0.00 2.92
4446 5525 1.671850 CGGTGGTGCTTCTAACGTCAT 60.672 52.381 0.00 0.00 33.11 3.06
4447 5526 0.319211 CGGTGGTGCTTCTAACGTCA 60.319 55.000 0.00 0.00 33.11 4.35
4448 5527 0.038892 TCGGTGGTGCTTCTAACGTC 60.039 55.000 0.00 0.00 38.81 4.34
4449 5528 0.038526 CTCGGTGGTGCTTCTAACGT 60.039 55.000 3.82 0.00 38.81 3.99
4450 5529 0.242825 TCTCGGTGGTGCTTCTAACG 59.757 55.000 0.00 0.00 39.07 3.18
4451 5530 1.000506 TGTCTCGGTGGTGCTTCTAAC 59.999 52.381 0.00 0.00 0.00 2.34
4452 5531 1.334160 TGTCTCGGTGGTGCTTCTAA 58.666 50.000 0.00 0.00 0.00 2.10
4453 5532 1.272490 CTTGTCTCGGTGGTGCTTCTA 59.728 52.381 0.00 0.00 0.00 2.10
4454 5533 0.034059 CTTGTCTCGGTGGTGCTTCT 59.966 55.000 0.00 0.00 0.00 2.85
4455 5534 0.951040 CCTTGTCTCGGTGGTGCTTC 60.951 60.000 0.00 0.00 0.00 3.86
4456 5535 1.071471 CCTTGTCTCGGTGGTGCTT 59.929 57.895 0.00 0.00 0.00 3.91
4457 5536 2.743718 CCTTGTCTCGGTGGTGCT 59.256 61.111 0.00 0.00 0.00 4.40
4458 5537 2.358737 CCCTTGTCTCGGTGGTGC 60.359 66.667 0.00 0.00 0.00 5.01
4459 5538 1.541310 TAGCCCTTGTCTCGGTGGTG 61.541 60.000 0.00 0.00 0.00 4.17
4460 5539 0.617820 ATAGCCCTTGTCTCGGTGGT 60.618 55.000 0.00 0.00 0.00 4.16
4461 5540 0.179073 CATAGCCCTTGTCTCGGTGG 60.179 60.000 0.00 0.00 0.00 4.61
4462 5541 0.811616 GCATAGCCCTTGTCTCGGTG 60.812 60.000 0.00 0.00 0.00 4.94
4463 5542 1.522569 GCATAGCCCTTGTCTCGGT 59.477 57.895 0.00 0.00 0.00 4.69
4464 5543 1.592669 CGCATAGCCCTTGTCTCGG 60.593 63.158 0.00 0.00 0.00 4.63
4465 5544 1.592669 CCGCATAGCCCTTGTCTCG 60.593 63.158 0.00 0.00 0.00 4.04
4466 5545 1.227674 CCCGCATAGCCCTTGTCTC 60.228 63.158 0.00 0.00 0.00 3.36
4467 5546 2.746375 CCCCGCATAGCCCTTGTCT 61.746 63.158 0.00 0.00 0.00 3.41
4468 5547 2.203209 CCCCGCATAGCCCTTGTC 60.203 66.667 0.00 0.00 0.00 3.18
4469 5548 1.858739 TTTCCCCGCATAGCCCTTGT 61.859 55.000 0.00 0.00 0.00 3.16
4470 5549 0.682855 TTTTCCCCGCATAGCCCTTG 60.683 55.000 0.00 0.00 0.00 3.61
4471 5550 0.261696 ATTTTCCCCGCATAGCCCTT 59.738 50.000 0.00 0.00 0.00 3.95
4472 5551 0.178990 GATTTTCCCCGCATAGCCCT 60.179 55.000 0.00 0.00 0.00 5.19
4473 5552 0.178990 AGATTTTCCCCGCATAGCCC 60.179 55.000 0.00 0.00 0.00 5.19
4474 5553 1.692411 AAGATTTTCCCCGCATAGCC 58.308 50.000 0.00 0.00 0.00 3.93
4475 5554 4.082733 GGAATAAGATTTTCCCCGCATAGC 60.083 45.833 0.00 0.00 37.29 2.97
4476 5555 5.070001 TGGAATAAGATTTTCCCCGCATAG 58.930 41.667 0.31 0.00 41.68 2.23
4477 5556 5.055265 TGGAATAAGATTTTCCCCGCATA 57.945 39.130 0.31 0.00 41.68 3.14
4478 5557 3.909732 TGGAATAAGATTTTCCCCGCAT 58.090 40.909 0.31 0.00 41.68 4.73
4479 5558 3.374042 TGGAATAAGATTTTCCCCGCA 57.626 42.857 0.31 0.00 41.68 5.69
4480 5559 3.699538 AGTTGGAATAAGATTTTCCCCGC 59.300 43.478 0.31 0.00 41.68 6.13
4481 5560 5.417580 TGAAGTTGGAATAAGATTTTCCCCG 59.582 40.000 0.31 0.00 41.68 5.73
4482 5561 6.663523 TCTGAAGTTGGAATAAGATTTTCCCC 59.336 38.462 0.31 0.00 41.68 4.81
4483 5562 7.611855 TCTCTGAAGTTGGAATAAGATTTTCCC 59.388 37.037 0.31 0.00 41.68 3.97
4484 5563 8.567285 TCTCTGAAGTTGGAATAAGATTTTCC 57.433 34.615 0.00 0.00 42.52 3.13
4485 5564 8.180920 GCTCTCTGAAGTTGGAATAAGATTTTC 58.819 37.037 0.00 0.00 0.00 2.29
4486 5565 7.121907 GGCTCTCTGAAGTTGGAATAAGATTTT 59.878 37.037 0.00 0.00 0.00 1.82
4487 5566 6.601217 GGCTCTCTGAAGTTGGAATAAGATTT 59.399 38.462 0.00 0.00 0.00 2.17
4488 5567 6.118852 GGCTCTCTGAAGTTGGAATAAGATT 58.881 40.000 0.00 0.00 0.00 2.40
4489 5568 5.679601 GGCTCTCTGAAGTTGGAATAAGAT 58.320 41.667 0.00 0.00 0.00 2.40
4490 5569 4.382040 CGGCTCTCTGAAGTTGGAATAAGA 60.382 45.833 0.00 0.00 0.00 2.10
4491 5570 3.868077 CGGCTCTCTGAAGTTGGAATAAG 59.132 47.826 0.00 0.00 0.00 1.73
4492 5571 3.861840 CGGCTCTCTGAAGTTGGAATAA 58.138 45.455 0.00 0.00 0.00 1.40
4493 5572 2.418746 GCGGCTCTCTGAAGTTGGAATA 60.419 50.000 0.00 0.00 0.00 1.75
4494 5573 1.677217 GCGGCTCTCTGAAGTTGGAAT 60.677 52.381 0.00 0.00 0.00 3.01
4495 5574 0.320771 GCGGCTCTCTGAAGTTGGAA 60.321 55.000 0.00 0.00 0.00 3.53
4496 5575 1.188219 AGCGGCTCTCTGAAGTTGGA 61.188 55.000 0.00 0.00 0.00 3.53
4497 5576 1.018226 CAGCGGCTCTCTGAAGTTGG 61.018 60.000 0.00 0.00 33.54 3.77
4498 5577 0.037882 TCAGCGGCTCTCTGAAGTTG 60.038 55.000 0.00 0.00 37.61 3.16
4499 5578 0.037790 GTCAGCGGCTCTCTGAAGTT 60.038 55.000 0.00 0.00 41.66 2.66
4500 5579 0.897863 AGTCAGCGGCTCTCTGAAGT 60.898 55.000 0.00 0.00 41.66 3.01
4501 5580 0.246086 AAGTCAGCGGCTCTCTGAAG 59.754 55.000 0.00 0.00 41.66 3.02
4502 5581 0.244994 GAAGTCAGCGGCTCTCTGAA 59.755 55.000 0.00 0.00 41.66 3.02
4503 5582 0.610509 AGAAGTCAGCGGCTCTCTGA 60.611 55.000 0.00 0.00 38.16 3.27
4504 5583 1.098869 TAGAAGTCAGCGGCTCTCTG 58.901 55.000 0.00 0.00 0.00 3.35
4505 5584 1.099689 GTAGAAGTCAGCGGCTCTCT 58.900 55.000 0.00 2.66 0.00 3.10
4506 5585 1.064952 GAGTAGAAGTCAGCGGCTCTC 59.935 57.143 0.00 0.00 0.00 3.20
4507 5586 1.099689 GAGTAGAAGTCAGCGGCTCT 58.900 55.000 0.00 0.00 0.00 4.09
4508 5587 0.101579 GGAGTAGAAGTCAGCGGCTC 59.898 60.000 0.00 0.00 0.00 4.70
4509 5588 1.324005 GGGAGTAGAAGTCAGCGGCT 61.324 60.000 0.00 0.00 0.00 5.52
4510 5589 1.142097 GGGAGTAGAAGTCAGCGGC 59.858 63.158 0.00 0.00 0.00 6.53
4511 5590 0.741915 GAGGGAGTAGAAGTCAGCGG 59.258 60.000 0.00 0.00 0.00 5.52
4512 5591 0.741915 GGAGGGAGTAGAAGTCAGCG 59.258 60.000 0.00 0.00 0.00 5.18
4513 5592 0.741915 CGGAGGGAGTAGAAGTCAGC 59.258 60.000 0.00 0.00 0.00 4.26
4514 5593 2.131776 ACGGAGGGAGTAGAAGTCAG 57.868 55.000 0.00 0.00 0.00 3.51
4515 5594 2.444421 GAACGGAGGGAGTAGAAGTCA 58.556 52.381 0.00 0.00 0.00 3.41
4516 5595 1.750206 GGAACGGAGGGAGTAGAAGTC 59.250 57.143 0.00 0.00 0.00 3.01
4517 5596 1.358445 AGGAACGGAGGGAGTAGAAGT 59.642 52.381 0.00 0.00 0.00 3.01
4518 5597 2.146920 AGGAACGGAGGGAGTAGAAG 57.853 55.000 0.00 0.00 0.00 2.85
4519 5598 3.744940 TTAGGAACGGAGGGAGTAGAA 57.255 47.619 0.00 0.00 0.00 2.10
4520 5599 3.744940 TTTAGGAACGGAGGGAGTAGA 57.255 47.619 0.00 0.00 0.00 2.59


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.