Multiple sequence alignment - TraesCS7B01G290200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G290200 chr7B 100.000 2339 0 0 1 2339 526434065 526431727 0.000000e+00 4320.0
1 TraesCS7B01G290200 chr7B 96.226 53 2 0 714 766 13830149 13830201 1.150000e-13 87.9
2 TraesCS7B01G290200 chr7B 94.737 38 2 0 30 67 630099631 630099594 2.510000e-05 60.2
3 TraesCS7B01G290200 chr7D 94.105 458 17 2 974 1423 497976521 497976066 0.000000e+00 688.0
4 TraesCS7B01G290200 chr7D 85.516 504 46 18 1 497 498171283 498170800 3.470000e-138 501.0
5 TraesCS7B01G290200 chr7D 86.897 290 11 9 2076 2339 497973753 497973465 1.360000e-77 300.0
6 TraesCS7B01G290200 chr7D 82.337 368 38 20 140 503 497978680 497978336 6.320000e-76 294.0
7 TraesCS7B01G290200 chr7D 92.611 203 9 2 1912 2109 497973873 497973672 1.060000e-73 287.0
8 TraesCS7B01G290200 chr7D 85.141 249 13 8 1529 1758 497976065 497975822 1.400000e-57 233.0
9 TraesCS7B01G290200 chr7D 89.820 167 16 1 817 982 497978176 497978010 1.820000e-51 213.0
10 TraesCS7B01G290200 chr7D 88.189 127 13 2 1 127 497979053 497978929 1.450000e-32 150.0
11 TraesCS7B01G290200 chr7D 92.381 105 2 5 1808 1911 497974014 497973915 6.740000e-31 145.0
12 TraesCS7B01G290200 chr7A 93.333 180 7 1 1244 1423 563604112 563603938 6.410000e-66 261.0
13 TraesCS7B01G290200 chr7A 84.644 267 12 5 2097 2339 563509619 563509358 3.000000e-59 239.0
14 TraesCS7B01G290200 chr7A 84.232 241 12 13 1824 2040 563603332 563603094 6.550000e-51 211.0
15 TraesCS7B01G290200 chr7A 80.508 236 9 9 1553 1752 563603918 563603684 1.870000e-31 147.0
16 TraesCS7B01G290200 chr3A 97.297 111 3 0 1418 1528 599867161 599867051 3.070000e-44 189.0
17 TraesCS7B01G290200 chr3A 95.455 110 5 0 1418 1527 57888947 57889056 2.390000e-40 176.0
18 TraesCS7B01G290200 chr6A 96.364 110 4 0 1418 1527 600702217 600702108 5.130000e-42 182.0
19 TraesCS7B01G290200 chr6A 94.017 117 6 1 1420 1535 116323254 116323138 2.390000e-40 176.0
20 TraesCS7B01G290200 chr5A 95.536 112 4 1 1420 1531 2407001 2407111 6.640000e-41 178.0
21 TraesCS7B01G290200 chr5A 90.152 132 12 1 1419 1549 691826725 691826594 1.110000e-38 171.0
22 TraesCS7B01G290200 chr4B 96.296 108 4 0 1420 1527 801323 801216 6.640000e-41 178.0
23 TraesCS7B01G290200 chr1B 96.296 108 4 0 1420 1527 654080308 654080415 6.640000e-41 178.0
24 TraesCS7B01G290200 chr4A 93.162 117 8 0 1420 1536 738782528 738782412 3.090000e-39 172.0
25 TraesCS7B01G290200 chr3B 85.000 80 9 3 40 117 814948384 814948462 6.930000e-11 78.7
26 TraesCS7B01G290200 chr3B 85.000 80 9 3 40 117 814988897 814988975 6.930000e-11 78.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G290200 chr7B 526431727 526434065 2338 True 4320.000000 4320 100.000000 1 2339 1 chr7B.!!$R1 2338
1 TraesCS7B01G290200 chr7D 497973465 497979053 5588 True 288.750000 688 88.935125 1 2339 8 chr7D.!!$R2 2338
2 TraesCS7B01G290200 chr7A 563603094 563604112 1018 True 206.333333 261 86.024333 1244 2040 3 chr7A.!!$R2 796

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
739 976 0.108615 CCAGAGGCGGACACAGTAAG 60.109 60.0 0.0 0.0 0.0 2.34 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1796 5419 0.249868 CAAGCAGGAACGTGACAGGA 60.25 55.0 1.39 0.0 0.0 3.86 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
123 124 7.646130 ACATGGTGAACATTTTTAAACTACACG 59.354 33.333 0.00 0.00 37.84 4.49
127 128 7.375017 GGTGAACATTTTTAAACTACACGACAG 59.625 37.037 0.00 0.00 0.00 3.51
128 129 8.117988 GTGAACATTTTTAAACTACACGACAGA 58.882 33.333 0.00 0.00 0.00 3.41
129 130 8.117988 TGAACATTTTTAAACTACACGACAGAC 58.882 33.333 0.00 0.00 0.00 3.51
130 131 7.542534 ACATTTTTAAACTACACGACAGACA 57.457 32.000 0.00 0.00 0.00 3.41
131 132 7.976826 ACATTTTTAAACTACACGACAGACAA 58.023 30.769 0.00 0.00 0.00 3.18
132 133 8.452534 ACATTTTTAAACTACACGACAGACAAA 58.547 29.630 0.00 0.00 0.00 2.83
133 134 9.445786 CATTTTTAAACTACACGACAGACAAAT 57.554 29.630 0.00 0.00 0.00 2.32
135 136 9.843334 TTTTTAAACTACACGACAGACAAATTT 57.157 25.926 0.00 0.00 0.00 1.82
136 137 9.843334 TTTTAAACTACACGACAGACAAATTTT 57.157 25.926 0.00 0.00 0.00 1.82
206 443 9.961265 AACCGTAAAGGAAAATTAAAGAAGAAG 57.039 29.630 0.00 0.00 45.00 2.85
280 517 8.851960 ATAAAACGGAAAGAACAGAAGAAAAC 57.148 30.769 0.00 0.00 0.00 2.43
282 519 6.451064 AACGGAAAGAACAGAAGAAAACAT 57.549 33.333 0.00 0.00 0.00 2.71
318 555 8.709386 AGATGTTGATCACATACTTACTGTTC 57.291 34.615 0.00 0.00 46.96 3.18
319 556 8.314021 AGATGTTGATCACATACTTACTGTTCA 58.686 33.333 0.00 0.00 46.96 3.18
322 559 7.275560 TGTTGATCACATACTTACTGTTCATCG 59.724 37.037 0.00 0.00 0.00 3.84
325 562 4.862574 TCACATACTTACTGTTCATCGTGC 59.137 41.667 0.00 0.00 0.00 5.34
400 637 8.409690 CGATTTGTTCGTTGAGTATTTGAAAAG 58.590 33.333 0.00 0.00 43.01 2.27
403 640 9.627395 TTTGTTCGTTGAGTATTTGAAAAGAAA 57.373 25.926 0.00 0.00 0.00 2.52
404 641 8.609478 TGTTCGTTGAGTATTTGAAAAGAAAC 57.391 30.769 0.00 0.00 0.00 2.78
405 642 8.455682 TGTTCGTTGAGTATTTGAAAAGAAACT 58.544 29.630 0.00 0.00 0.00 2.66
417 654 9.822185 ATTTGAAAAGAAACTAAGAAAGCATGT 57.178 25.926 0.00 0.00 0.00 3.21
562 799 2.666098 AAGCGATTACTGGGCCGGT 61.666 57.895 23.80 23.80 0.00 5.28
564 801 2.108362 CGATTACTGGGCCGGTCC 59.892 66.667 24.05 21.35 0.00 4.46
565 802 2.727392 CGATTACTGGGCCGGTCCA 61.727 63.158 29.55 29.55 36.21 4.02
578 815 4.070552 GTCCAGTTCGCGCTCCCT 62.071 66.667 5.56 0.00 0.00 4.20
579 816 4.069232 TCCAGTTCGCGCTCCCTG 62.069 66.667 5.56 7.95 0.00 4.45
582 819 4.749310 AGTTCGCGCTCCCTGCAG 62.749 66.667 6.78 6.78 43.06 4.41
620 857 0.250945 TCACTGTGGGCGGCAAATAA 60.251 50.000 12.47 0.00 0.00 1.40
623 860 1.228583 TGTGGGCGGCAAATAACCA 60.229 52.632 12.47 0.00 0.00 3.67
629 866 2.889617 GGCAAATAACCACGCCCC 59.110 61.111 0.00 0.00 38.67 5.80
630 867 1.979693 GGCAAATAACCACGCCCCA 60.980 57.895 0.00 0.00 38.67 4.96
633 870 1.253100 CAAATAACCACGCCCCAACT 58.747 50.000 0.00 0.00 0.00 3.16
634 871 1.616374 CAAATAACCACGCCCCAACTT 59.384 47.619 0.00 0.00 0.00 2.66
635 872 2.820787 CAAATAACCACGCCCCAACTTA 59.179 45.455 0.00 0.00 0.00 2.24
636 873 2.413310 ATAACCACGCCCCAACTTAG 57.587 50.000 0.00 0.00 0.00 2.18
637 874 0.325602 TAACCACGCCCCAACTTAGG 59.674 55.000 0.00 0.00 0.00 2.69
645 882 1.078426 CCCAACTTAGGGCTGACCG 60.078 63.158 0.00 0.00 46.96 4.79
646 883 1.078426 CCAACTTAGGGCTGACCGG 60.078 63.158 0.00 0.00 46.96 5.28
649 886 3.399181 CTTAGGGCTGACCGGGCA 61.399 66.667 11.16 11.16 46.96 5.36
659 896 3.441011 GACCGGGCATGGTAGTCGG 62.441 68.421 0.00 0.00 44.01 4.79
670 907 1.218316 GTAGTCGGTCCTTGGGCTG 59.782 63.158 0.00 0.00 0.00 4.85
673 910 4.974438 TCGGTCCTTGGGCTGGGT 62.974 66.667 0.00 0.00 0.00 4.51
674 911 4.410400 CGGTCCTTGGGCTGGGTC 62.410 72.222 0.00 0.00 0.00 4.46
675 912 4.410400 GGTCCTTGGGCTGGGTCG 62.410 72.222 0.00 0.00 0.00 4.79
679 916 3.058160 CTTGGGCTGGGTCGCTTG 61.058 66.667 0.00 0.00 0.00 4.01
683 920 4.400961 GGCTGGGTCGCTTGCTCT 62.401 66.667 5.72 0.00 0.00 4.09
684 921 2.579201 GCTGGGTCGCTTGCTCTA 59.421 61.111 0.00 0.00 0.00 2.43
685 922 1.144936 GCTGGGTCGCTTGCTCTAT 59.855 57.895 0.00 0.00 0.00 1.98
686 923 0.462759 GCTGGGTCGCTTGCTCTATT 60.463 55.000 0.00 0.00 0.00 1.73
687 924 1.202533 GCTGGGTCGCTTGCTCTATTA 60.203 52.381 0.00 0.00 0.00 0.98
688 925 2.748605 CTGGGTCGCTTGCTCTATTAG 58.251 52.381 0.00 0.00 0.00 1.73
689 926 1.412710 TGGGTCGCTTGCTCTATTAGG 59.587 52.381 0.00 0.00 0.00 2.69
690 927 1.503294 GGTCGCTTGCTCTATTAGGC 58.497 55.000 0.00 0.00 0.00 3.93
691 928 1.503294 GTCGCTTGCTCTATTAGGCC 58.497 55.000 0.00 0.00 0.00 5.19
692 929 1.069358 GTCGCTTGCTCTATTAGGCCT 59.931 52.381 11.78 11.78 0.00 5.19
693 930 1.069204 TCGCTTGCTCTATTAGGCCTG 59.931 52.381 17.99 0.00 0.00 4.85
694 931 1.202580 CGCTTGCTCTATTAGGCCTGT 60.203 52.381 17.99 6.62 0.00 4.00
695 932 2.743183 CGCTTGCTCTATTAGGCCTGTT 60.743 50.000 17.99 4.82 0.00 3.16
696 933 2.615912 GCTTGCTCTATTAGGCCTGTTG 59.384 50.000 17.99 5.26 0.00 3.33
697 934 2.332063 TGCTCTATTAGGCCTGTTGC 57.668 50.000 17.99 11.42 40.16 4.17
698 935 1.839994 TGCTCTATTAGGCCTGTTGCT 59.160 47.619 17.99 0.00 40.92 3.91
699 936 2.239654 TGCTCTATTAGGCCTGTTGCTT 59.760 45.455 17.99 0.00 40.92 3.91
700 937 2.615912 GCTCTATTAGGCCTGTTGCTTG 59.384 50.000 17.99 1.08 40.92 4.01
701 938 3.878778 CTCTATTAGGCCTGTTGCTTGT 58.121 45.455 17.99 0.00 40.92 3.16
702 939 4.265073 CTCTATTAGGCCTGTTGCTTGTT 58.735 43.478 17.99 0.00 40.92 2.83
703 940 4.662278 TCTATTAGGCCTGTTGCTTGTTT 58.338 39.130 17.99 0.00 40.92 2.83
704 941 5.076873 TCTATTAGGCCTGTTGCTTGTTTT 58.923 37.500 17.99 0.00 40.92 2.43
705 942 3.451141 TTAGGCCTGTTGCTTGTTTTG 57.549 42.857 17.99 0.00 40.92 2.44
706 943 1.484038 AGGCCTGTTGCTTGTTTTGA 58.516 45.000 3.11 0.00 40.92 2.69
707 944 1.136891 AGGCCTGTTGCTTGTTTTGAC 59.863 47.619 3.11 0.00 40.92 3.18
708 945 1.134848 GGCCTGTTGCTTGTTTTGACA 60.135 47.619 0.00 0.00 40.92 3.58
709 946 2.195922 GCCTGTTGCTTGTTTTGACAG 58.804 47.619 0.00 0.00 37.92 3.51
710 947 2.159254 GCCTGTTGCTTGTTTTGACAGA 60.159 45.455 3.56 0.00 39.97 3.41
711 948 3.438360 CCTGTTGCTTGTTTTGACAGAC 58.562 45.455 3.56 0.00 39.97 3.51
712 949 3.129287 CCTGTTGCTTGTTTTGACAGACT 59.871 43.478 3.56 0.00 39.97 3.24
713 950 4.380867 CCTGTTGCTTGTTTTGACAGACTT 60.381 41.667 3.56 0.00 39.97 3.01
714 951 4.484236 TGTTGCTTGTTTTGACAGACTTG 58.516 39.130 0.00 0.00 0.00 3.16
715 952 3.781079 TGCTTGTTTTGACAGACTTGG 57.219 42.857 0.00 0.00 0.00 3.61
716 953 2.426738 TGCTTGTTTTGACAGACTTGGG 59.573 45.455 0.00 0.00 0.00 4.12
717 954 2.799562 GCTTGTTTTGACAGACTTGGGC 60.800 50.000 0.00 0.00 0.00 5.36
718 955 1.398692 TGTTTTGACAGACTTGGGCC 58.601 50.000 0.00 0.00 0.00 5.80
719 956 1.064017 TGTTTTGACAGACTTGGGCCT 60.064 47.619 4.53 0.00 0.00 5.19
720 957 1.609072 GTTTTGACAGACTTGGGCCTC 59.391 52.381 4.53 0.00 0.00 4.70
721 958 0.110486 TTTGACAGACTTGGGCCTCC 59.890 55.000 4.53 0.00 0.00 4.30
722 959 1.059584 TTGACAGACTTGGGCCTCCA 61.060 55.000 4.53 0.00 42.25 3.86
723 960 1.298014 GACAGACTTGGGCCTCCAG 59.702 63.158 4.53 0.18 45.04 3.86
724 961 1.152030 ACAGACTTGGGCCTCCAGA 60.152 57.895 4.53 0.00 45.04 3.86
725 962 1.197430 ACAGACTTGGGCCTCCAGAG 61.197 60.000 4.53 0.00 45.04 3.35
734 971 2.997315 CCTCCAGAGGCGGACACA 60.997 66.667 0.00 0.00 42.44 3.72
735 972 2.575993 CTCCAGAGGCGGACACAG 59.424 66.667 0.00 0.00 0.00 3.66
736 973 2.203640 TCCAGAGGCGGACACAGT 60.204 61.111 0.00 0.00 0.00 3.55
737 974 0.965866 CTCCAGAGGCGGACACAGTA 60.966 60.000 0.00 0.00 0.00 2.74
738 975 0.541063 TCCAGAGGCGGACACAGTAA 60.541 55.000 0.00 0.00 0.00 2.24
739 976 0.108615 CCAGAGGCGGACACAGTAAG 60.109 60.000 0.00 0.00 0.00 2.34
740 977 0.603569 CAGAGGCGGACACAGTAAGT 59.396 55.000 0.00 0.00 0.00 2.24
741 978 1.816835 CAGAGGCGGACACAGTAAGTA 59.183 52.381 0.00 0.00 0.00 2.24
742 979 2.093106 AGAGGCGGACACAGTAAGTAG 58.907 52.381 0.00 0.00 0.00 2.57
743 980 1.817447 GAGGCGGACACAGTAAGTAGT 59.183 52.381 0.00 0.00 0.00 2.73
744 981 2.230750 GAGGCGGACACAGTAAGTAGTT 59.769 50.000 0.00 0.00 0.00 2.24
745 982 2.029290 AGGCGGACACAGTAAGTAGTTG 60.029 50.000 0.00 0.00 0.00 3.16
746 983 2.288640 GGCGGACACAGTAAGTAGTTGT 60.289 50.000 0.00 0.00 0.00 3.32
747 984 3.057315 GGCGGACACAGTAAGTAGTTGTA 60.057 47.826 0.00 0.00 0.00 2.41
748 985 4.164294 GCGGACACAGTAAGTAGTTGTAG 58.836 47.826 0.00 0.00 0.00 2.74
749 986 4.164294 CGGACACAGTAAGTAGTTGTAGC 58.836 47.826 0.00 0.00 0.00 3.58
750 987 4.320714 CGGACACAGTAAGTAGTTGTAGCA 60.321 45.833 0.00 0.00 0.00 3.49
751 988 5.162075 GGACACAGTAAGTAGTTGTAGCAG 58.838 45.833 0.00 0.00 0.00 4.24
752 989 5.048224 GGACACAGTAAGTAGTTGTAGCAGA 60.048 44.000 0.00 0.00 0.00 4.26
753 990 6.401047 ACACAGTAAGTAGTTGTAGCAGAA 57.599 37.500 0.00 0.00 0.00 3.02
754 991 6.448006 ACACAGTAAGTAGTTGTAGCAGAAG 58.552 40.000 0.00 0.00 0.00 2.85
755 992 6.264744 ACACAGTAAGTAGTTGTAGCAGAAGA 59.735 38.462 0.00 0.00 0.00 2.87
756 993 7.145985 CACAGTAAGTAGTTGTAGCAGAAGAA 58.854 38.462 0.00 0.00 0.00 2.52
757 994 7.327275 CACAGTAAGTAGTTGTAGCAGAAGAAG 59.673 40.741 0.00 0.00 0.00 2.85
758 995 6.809196 CAGTAAGTAGTTGTAGCAGAAGAAGG 59.191 42.308 0.00 0.00 0.00 3.46
759 996 6.720288 AGTAAGTAGTTGTAGCAGAAGAAGGA 59.280 38.462 0.00 0.00 0.00 3.36
760 997 5.652994 AGTAGTTGTAGCAGAAGAAGGAG 57.347 43.478 0.00 0.00 0.00 3.69
761 998 5.081032 AGTAGTTGTAGCAGAAGAAGGAGT 58.919 41.667 0.00 0.00 0.00 3.85
762 999 4.965200 AGTTGTAGCAGAAGAAGGAGTT 57.035 40.909 0.00 0.00 0.00 3.01
763 1000 4.888917 AGTTGTAGCAGAAGAAGGAGTTC 58.111 43.478 0.00 0.00 0.00 3.01
764 1001 4.591072 AGTTGTAGCAGAAGAAGGAGTTCT 59.409 41.667 0.00 0.00 45.56 3.01
775 1012 4.813296 GAAGGAGTTCTTCGCTCAAAAA 57.187 40.909 0.00 0.00 41.95 1.94
798 1035 7.524717 AAATTAAAAGCAGCAGGAGTTCTAA 57.475 32.000 0.00 0.00 0.00 2.10
799 1036 5.941948 TTAAAAGCAGCAGGAGTTCTAAC 57.058 39.130 0.00 0.00 0.00 2.34
800 1037 3.492102 AAAGCAGCAGGAGTTCTAACA 57.508 42.857 0.00 0.00 0.00 2.41
801 1038 2.758736 AGCAGCAGGAGTTCTAACAG 57.241 50.000 0.00 0.00 0.00 3.16
802 1039 1.974236 AGCAGCAGGAGTTCTAACAGT 59.026 47.619 0.00 0.00 0.00 3.55
805 1042 3.187432 GCAGCAGGAGTTCTAACAGTTTC 59.813 47.826 0.00 0.00 0.00 2.78
806 1043 3.430218 CAGCAGGAGTTCTAACAGTTTCG 59.570 47.826 0.00 0.00 0.00 3.46
809 1046 2.035576 AGGAGTTCTAACAGTTTCGCGT 59.964 45.455 5.77 0.00 0.00 6.01
810 1047 2.155155 GGAGTTCTAACAGTTTCGCGTG 59.845 50.000 5.77 0.00 0.00 5.34
811 1048 1.525619 AGTTCTAACAGTTTCGCGTGC 59.474 47.619 5.77 0.00 0.00 5.34
812 1049 1.259507 GTTCTAACAGTTTCGCGTGCA 59.740 47.619 5.77 0.00 0.00 4.57
814 1051 0.110823 CTAACAGTTTCGCGTGCACC 60.111 55.000 12.15 3.09 0.00 5.01
815 1052 1.823260 TAACAGTTTCGCGTGCACCG 61.823 55.000 12.15 15.73 40.40 4.94
831 1074 2.450345 CCGCTAGTTCGTTTCCGCC 61.450 63.158 0.00 0.00 0.00 6.13
881 1124 2.562912 CAGCGCGCAAGAAACCAT 59.437 55.556 35.10 5.73 43.02 3.55
908 1151 5.927281 ACACTATTTATACACGACCCTGT 57.073 39.130 0.00 0.00 0.00 4.00
937 1180 3.987404 ACGCAGTTCAATCAGGGC 58.013 55.556 0.00 0.00 37.78 5.19
957 1200 4.907034 CCGATCCGTCGCGTCCAG 62.907 72.222 5.77 0.00 46.32 3.86
1191 2932 0.606673 GCAGGGAGAAGTTCGCCTTT 60.607 55.000 22.87 10.70 39.46 3.11
1276 3017 0.544223 GGAGAAGAAGGAGAAGGCCC 59.456 60.000 0.00 0.00 0.00 5.80
1296 3037 2.765699 CCAGGAGAAGAAGGAAGAGGAG 59.234 54.545 0.00 0.00 0.00 3.69
1392 3141 3.303659 CGGCTCTTTACCGTAGCTAGTAC 60.304 52.174 0.00 0.00 45.70 2.73
1393 3142 3.629398 GGCTCTTTACCGTAGCTAGTACA 59.371 47.826 0.00 0.00 36.48 2.90
1410 3159 5.752892 AGTACAGTATCTGTGTATCCGTG 57.247 43.478 11.92 0.00 45.01 4.94
1423 3172 3.315470 TGTATCCGTGATCTGCTGTACTC 59.685 47.826 0.00 0.00 0.00 2.59
1424 3173 1.103803 TCCGTGATCTGCTGTACTCC 58.896 55.000 0.00 0.00 0.00 3.85
1425 3174 0.103208 CCGTGATCTGCTGTACTCCC 59.897 60.000 0.00 0.00 0.00 4.30
1426 3175 1.107114 CGTGATCTGCTGTACTCCCT 58.893 55.000 0.00 0.00 0.00 4.20
1427 3176 1.066303 CGTGATCTGCTGTACTCCCTC 59.934 57.143 0.00 0.00 0.00 4.30
1428 3177 1.410882 GTGATCTGCTGTACTCCCTCC 59.589 57.143 0.00 0.00 0.00 4.30
1429 3178 0.671251 GATCTGCTGTACTCCCTCCG 59.329 60.000 0.00 0.00 0.00 4.63
1430 3179 0.033011 ATCTGCTGTACTCCCTCCGT 60.033 55.000 0.00 0.00 0.00 4.69
1431 3180 0.251653 TCTGCTGTACTCCCTCCGTT 60.252 55.000 0.00 0.00 0.00 4.44
1432 3181 0.173708 CTGCTGTACTCCCTCCGTTC 59.826 60.000 0.00 0.00 0.00 3.95
1433 3182 1.139095 GCTGTACTCCCTCCGTTCG 59.861 63.158 0.00 0.00 0.00 3.95
1434 3183 1.139095 CTGTACTCCCTCCGTTCGC 59.861 63.158 0.00 0.00 0.00 4.70
1435 3184 1.303888 TGTACTCCCTCCGTTCGCT 60.304 57.895 0.00 0.00 0.00 4.93
1436 3185 0.896940 TGTACTCCCTCCGTTCGCTT 60.897 55.000 0.00 0.00 0.00 4.68
1437 3186 0.245813 GTACTCCCTCCGTTCGCTTT 59.754 55.000 0.00 0.00 0.00 3.51
1438 3187 0.971386 TACTCCCTCCGTTCGCTTTT 59.029 50.000 0.00 0.00 0.00 2.27
1439 3188 0.971386 ACTCCCTCCGTTCGCTTTTA 59.029 50.000 0.00 0.00 0.00 1.52
1440 3189 1.553704 ACTCCCTCCGTTCGCTTTTAT 59.446 47.619 0.00 0.00 0.00 1.40
1441 3190 2.762327 ACTCCCTCCGTTCGCTTTTATA 59.238 45.455 0.00 0.00 0.00 0.98
1442 3191 3.196254 ACTCCCTCCGTTCGCTTTTATAA 59.804 43.478 0.00 0.00 0.00 0.98
1443 3192 3.788937 TCCCTCCGTTCGCTTTTATAAG 58.211 45.455 0.00 0.00 34.36 1.73
1444 3193 2.870411 CCCTCCGTTCGCTTTTATAAGG 59.130 50.000 0.00 0.00 31.76 2.69
1445 3194 2.287103 CCTCCGTTCGCTTTTATAAGGC 59.713 50.000 0.00 3.38 31.76 4.35
1446 3195 1.928503 TCCGTTCGCTTTTATAAGGCG 59.071 47.619 21.05 21.05 34.45 5.52
1447 3196 1.662122 CCGTTCGCTTTTATAAGGCGT 59.338 47.619 23.89 0.00 34.63 5.68
1448 3197 2.094734 CCGTTCGCTTTTATAAGGCGTT 59.905 45.455 23.89 0.00 34.63 4.84
1449 3198 3.425227 CCGTTCGCTTTTATAAGGCGTTT 60.425 43.478 23.89 0.00 34.63 3.60
1450 3199 3.777161 CGTTCGCTTTTATAAGGCGTTTC 59.223 43.478 23.89 17.11 34.63 2.78
1451 3200 4.667161 CGTTCGCTTTTATAAGGCGTTTCA 60.667 41.667 23.89 10.40 34.63 2.69
1452 3201 4.593597 TCGCTTTTATAAGGCGTTTCAG 57.406 40.909 23.89 5.97 34.63 3.02
1453 3202 4.247258 TCGCTTTTATAAGGCGTTTCAGA 58.753 39.130 23.89 9.63 34.63 3.27
1454 3203 4.092383 TCGCTTTTATAAGGCGTTTCAGAC 59.908 41.667 23.89 0.00 34.63 3.51
1455 3204 4.142988 CGCTTTTATAAGGCGTTTCAGACA 60.143 41.667 19.69 0.00 31.76 3.41
1456 3205 5.324697 GCTTTTATAAGGCGTTTCAGACAG 58.675 41.667 0.00 0.00 31.76 3.51
1457 3206 4.939509 TTTATAAGGCGTTTCAGACAGC 57.060 40.909 0.00 0.00 0.00 4.40
1458 3207 2.770164 ATAAGGCGTTTCAGACAGCT 57.230 45.000 0.00 0.00 0.00 4.24
1459 3208 1.795768 TAAGGCGTTTCAGACAGCTG 58.204 50.000 13.48 13.48 43.67 4.24
1460 3209 0.886490 AAGGCGTTTCAGACAGCTGG 60.886 55.000 19.93 0.00 42.53 4.85
1461 3210 2.328099 GGCGTTTCAGACAGCTGGG 61.328 63.158 19.93 7.33 42.53 4.45
1462 3211 1.598130 GCGTTTCAGACAGCTGGGT 60.598 57.895 19.93 0.66 42.53 4.51
1463 3212 1.166531 GCGTTTCAGACAGCTGGGTT 61.167 55.000 19.93 0.00 42.53 4.11
1464 3213 1.308998 CGTTTCAGACAGCTGGGTTT 58.691 50.000 19.93 0.00 42.53 3.27
1465 3214 2.489971 CGTTTCAGACAGCTGGGTTTA 58.510 47.619 19.93 0.00 42.53 2.01
1466 3215 2.875933 CGTTTCAGACAGCTGGGTTTAA 59.124 45.455 19.93 3.73 42.53 1.52
1467 3216 3.314080 CGTTTCAGACAGCTGGGTTTAAA 59.686 43.478 19.93 8.82 42.53 1.52
1468 3217 4.607955 GTTTCAGACAGCTGGGTTTAAAC 58.392 43.478 19.93 16.26 42.53 2.01
1469 3218 3.857157 TCAGACAGCTGGGTTTAAACT 57.143 42.857 19.93 0.00 42.53 2.66
1470 3219 3.476552 TCAGACAGCTGGGTTTAAACTG 58.523 45.455 19.93 10.10 42.53 3.16
1471 3220 3.118038 TCAGACAGCTGGGTTTAAACTGT 60.118 43.478 19.93 13.08 43.93 3.55
1472 3221 3.632145 CAGACAGCTGGGTTTAAACTGTT 59.368 43.478 19.93 4.58 41.45 3.16
1473 3222 4.097892 CAGACAGCTGGGTTTAAACTGTTT 59.902 41.667 19.93 10.98 41.45 2.83
1474 3223 5.298276 CAGACAGCTGGGTTTAAACTGTTTA 59.702 40.000 19.93 8.84 41.45 2.01
1475 3224 5.531287 AGACAGCTGGGTTTAAACTGTTTAG 59.469 40.000 19.93 9.86 41.45 1.85
1476 3225 5.198207 ACAGCTGGGTTTAAACTGTTTAGT 58.802 37.500 19.93 7.93 38.38 2.24
1477 3226 6.358991 ACAGCTGGGTTTAAACTGTTTAGTA 58.641 36.000 19.93 3.70 38.38 1.82
1478 3227 6.261603 ACAGCTGGGTTTAAACTGTTTAGTAC 59.738 38.462 19.93 13.47 38.38 2.73
1479 3228 6.261381 CAGCTGGGTTTAAACTGTTTAGTACA 59.739 38.462 17.50 14.14 35.69 2.90
1480 3229 6.261603 AGCTGGGTTTAAACTGTTTAGTACAC 59.738 38.462 17.50 18.26 35.69 2.90
1481 3230 6.261603 GCTGGGTTTAAACTGTTTAGTACACT 59.738 38.462 17.50 0.00 35.69 3.55
1482 3231 7.556733 TGGGTTTAAACTGTTTAGTACACTG 57.443 36.000 17.50 0.00 35.69 3.66
1483 3232 7.111466 TGGGTTTAAACTGTTTAGTACACTGT 58.889 34.615 17.50 0.00 35.69 3.55
1484 3233 7.280652 TGGGTTTAAACTGTTTAGTACACTGTC 59.719 37.037 17.50 9.62 35.69 3.51
1485 3234 7.496920 GGGTTTAAACTGTTTAGTACACTGTCT 59.503 37.037 17.50 0.00 35.69 3.41
1486 3235 8.333186 GGTTTAAACTGTTTAGTACACTGTCTG 58.667 37.037 17.50 0.00 35.69 3.51
1487 3236 9.090692 GTTTAAACTGTTTAGTACACTGTCTGA 57.909 33.333 11.18 0.00 35.69 3.27
1488 3237 9.656040 TTTAAACTGTTTAGTACACTGTCTGAA 57.344 29.630 12.30 0.00 35.69 3.02
1489 3238 9.826574 TTAAACTGTTTAGTACACTGTCTGAAT 57.173 29.630 12.30 0.00 35.69 2.57
1490 3239 8.732746 AAACTGTTTAGTACACTGTCTGAATT 57.267 30.769 3.51 0.00 35.69 2.17
1491 3240 8.732746 AACTGTTTAGTACACTGTCTGAATTT 57.267 30.769 0.00 0.00 35.69 1.82
1492 3241 8.142994 ACTGTTTAGTACACTGTCTGAATTTG 57.857 34.615 0.00 0.00 34.74 2.32
1493 3242 6.954944 TGTTTAGTACACTGTCTGAATTTGC 58.045 36.000 0.00 0.00 0.00 3.68
1494 3243 6.765989 TGTTTAGTACACTGTCTGAATTTGCT 59.234 34.615 0.00 0.00 0.00 3.91
1495 3244 7.929245 TGTTTAGTACACTGTCTGAATTTGCTA 59.071 33.333 0.00 0.00 0.00 3.49
1496 3245 8.770828 GTTTAGTACACTGTCTGAATTTGCTAA 58.229 33.333 0.00 0.00 0.00 3.09
1497 3246 8.896320 TTAGTACACTGTCTGAATTTGCTAAA 57.104 30.769 0.00 0.00 0.00 1.85
1498 3247 7.801716 AGTACACTGTCTGAATTTGCTAAAA 57.198 32.000 0.00 0.00 0.00 1.52
1499 3248 7.639945 AGTACACTGTCTGAATTTGCTAAAAC 58.360 34.615 0.00 0.00 0.00 2.43
1500 3249 5.510671 ACACTGTCTGAATTTGCTAAAACG 58.489 37.500 0.00 0.00 0.00 3.60
1501 3250 5.065988 ACACTGTCTGAATTTGCTAAAACGT 59.934 36.000 0.00 0.00 0.00 3.99
1502 3251 5.971202 CACTGTCTGAATTTGCTAAAACGTT 59.029 36.000 0.00 0.00 0.00 3.99
1503 3252 6.472163 CACTGTCTGAATTTGCTAAAACGTTT 59.528 34.615 7.96 7.96 0.00 3.60
1504 3253 7.009174 CACTGTCTGAATTTGCTAAAACGTTTT 59.991 33.333 27.65 27.65 0.00 2.43
1505 3254 8.185505 ACTGTCTGAATTTGCTAAAACGTTTTA 58.814 29.630 26.99 26.99 0.00 1.52
1506 3255 9.180678 CTGTCTGAATTTGCTAAAACGTTTTAT 57.819 29.630 28.42 15.89 32.69 1.40
1524 3273 9.813446 ACGTTTTATATAAGTAAACAGAGGGAG 57.187 33.333 8.51 0.00 32.67 4.30
1525 3274 9.813446 CGTTTTATATAAGTAAACAGAGGGAGT 57.187 33.333 8.51 0.00 32.67 3.85
1570 3319 2.758009 TGTACTTCGTTTGGTGGTAGC 58.242 47.619 0.00 0.00 0.00 3.58
1664 3431 1.197721 CGTGTCCTGATGGCAGTTTTC 59.802 52.381 0.00 0.00 40.63 2.29
1679 3446 7.271511 TGGCAGTTTTCAGTGTTGATTAAATT 58.728 30.769 0.00 0.00 32.27 1.82
1745 3530 3.125573 CTCACCGCTCGTCCTCGA 61.126 66.667 0.00 0.00 44.12 4.04
1805 5428 3.237628 CATCGTATGCTATCCTGTCACG 58.762 50.000 0.00 0.00 0.00 4.35
1806 5429 2.294979 TCGTATGCTATCCTGTCACGT 58.705 47.619 0.00 0.00 0.00 4.49
1837 5460 4.141981 TGGTGCATCTTTCTTTTGCAAGAA 60.142 37.500 0.00 0.00 46.91 2.52
1877 5500 6.681777 CAAAGTTTGCTTAAAGGATGCTAGT 58.318 36.000 1.96 0.00 33.95 2.57
1878 5501 5.886960 AGTTTGCTTAAAGGATGCTAGTG 57.113 39.130 0.00 0.00 0.00 2.74
1880 5503 5.770162 AGTTTGCTTAAAGGATGCTAGTGTT 59.230 36.000 0.00 0.00 0.00 3.32
1881 5504 5.627499 TTGCTTAAAGGATGCTAGTGTTG 57.373 39.130 0.00 0.00 0.00 3.33
1882 5505 4.651778 TGCTTAAAGGATGCTAGTGTTGT 58.348 39.130 0.00 0.00 0.00 3.32
1925 5589 2.591715 GCGTTCAGTGGCACTGGT 60.592 61.111 38.88 9.99 45.94 4.00
1951 5615 0.680921 GCTTGGTTATGCAGAGGCCA 60.681 55.000 5.01 3.06 40.13 5.36
2005 5669 1.504359 CCGTAAGTTGGTGAAAGCGA 58.496 50.000 0.00 0.00 36.92 4.93
2066 5735 2.954318 ACTATATTTTGCTGCAGGCCTG 59.046 45.455 29.34 29.34 40.92 4.85
2067 5736 1.117150 ATATTTTGCTGCAGGCCTGG 58.883 50.000 33.46 19.16 40.92 4.45
2068 5737 0.251742 TATTTTGCTGCAGGCCTGGT 60.252 50.000 33.46 4.71 40.92 4.00
2069 5738 1.123246 ATTTTGCTGCAGGCCTGGTT 61.123 50.000 33.46 0.00 40.92 3.67
2070 5739 0.468958 TTTTGCTGCAGGCCTGGTTA 60.469 50.000 33.46 9.14 40.92 2.85
2071 5740 0.468958 TTTGCTGCAGGCCTGGTTAA 60.469 50.000 33.46 14.16 40.92 2.01
2072 5741 0.468958 TTGCTGCAGGCCTGGTTAAA 60.469 50.000 33.46 11.36 40.92 1.52
2073 5742 0.251742 TGCTGCAGGCCTGGTTAAAT 60.252 50.000 33.46 0.00 40.92 1.40
2074 5743 0.457443 GCTGCAGGCCTGGTTAAATC 59.543 55.000 33.46 15.59 34.27 2.17
2075 5744 1.957113 GCTGCAGGCCTGGTTAAATCT 60.957 52.381 33.46 0.00 34.27 2.40
2076 5745 1.747355 CTGCAGGCCTGGTTAAATCTG 59.253 52.381 33.46 14.72 0.00 2.90
2077 5746 0.457443 GCAGGCCTGGTTAAATCTGC 59.543 55.000 33.46 12.75 40.30 4.26
2078 5747 1.957113 GCAGGCCTGGTTAAATCTGCT 60.957 52.381 33.46 0.00 42.77 4.24
2079 5748 2.019984 CAGGCCTGGTTAAATCTGCTC 58.980 52.381 26.14 0.00 0.00 4.26
2080 5749 1.635487 AGGCCTGGTTAAATCTGCTCA 59.365 47.619 3.11 0.00 0.00 4.26
2081 5750 2.041620 AGGCCTGGTTAAATCTGCTCAA 59.958 45.455 3.11 0.00 0.00 3.02
2082 5751 3.026694 GGCCTGGTTAAATCTGCTCAAT 58.973 45.455 0.00 0.00 0.00 2.57
2083 5752 3.067320 GGCCTGGTTAAATCTGCTCAATC 59.933 47.826 0.00 0.00 0.00 2.67
2084 5753 3.067320 GCCTGGTTAAATCTGCTCAATCC 59.933 47.826 0.00 0.00 0.00 3.01
2085 5754 3.633986 CCTGGTTAAATCTGCTCAATCCC 59.366 47.826 0.00 0.00 0.00 3.85
2086 5755 4.272489 CTGGTTAAATCTGCTCAATCCCA 58.728 43.478 0.00 0.00 0.00 4.37
2087 5756 4.671831 TGGTTAAATCTGCTCAATCCCAA 58.328 39.130 0.00 0.00 0.00 4.12
2088 5757 5.083122 TGGTTAAATCTGCTCAATCCCAAA 58.917 37.500 0.00 0.00 0.00 3.28
2089 5758 5.541868 TGGTTAAATCTGCTCAATCCCAAAA 59.458 36.000 0.00 0.00 0.00 2.44
2090 5759 5.869344 GGTTAAATCTGCTCAATCCCAAAAC 59.131 40.000 0.00 0.00 0.00 2.43
2091 5760 4.541973 AAATCTGCTCAATCCCAAAACC 57.458 40.909 0.00 0.00 0.00 3.27
2092 5761 2.673775 TCTGCTCAATCCCAAAACCA 57.326 45.000 0.00 0.00 0.00 3.67
2093 5762 2.956132 TCTGCTCAATCCCAAAACCAA 58.044 42.857 0.00 0.00 0.00 3.67
2094 5763 3.303938 TCTGCTCAATCCCAAAACCAAA 58.696 40.909 0.00 0.00 0.00 3.28
2095 5764 3.903090 TCTGCTCAATCCCAAAACCAAAT 59.097 39.130 0.00 0.00 0.00 2.32
2096 5765 4.347583 TCTGCTCAATCCCAAAACCAAATT 59.652 37.500 0.00 0.00 0.00 1.82
2097 5766 5.541868 TCTGCTCAATCCCAAAACCAAATTA 59.458 36.000 0.00 0.00 0.00 1.40
2098 5767 6.213195 TCTGCTCAATCCCAAAACCAAATTAT 59.787 34.615 0.00 0.00 0.00 1.28
2099 5768 7.398618 TCTGCTCAATCCCAAAACCAAATTATA 59.601 33.333 0.00 0.00 0.00 0.98
2100 5769 8.088463 TGCTCAATCCCAAAACCAAATTATAT 57.912 30.769 0.00 0.00 0.00 0.86
2101 5770 8.547173 TGCTCAATCCCAAAACCAAATTATATT 58.453 29.630 0.00 0.00 0.00 1.28
2102 5771 9.394767 GCTCAATCCCAAAACCAAATTATATTT 57.605 29.630 0.00 0.00 0.00 1.40
2105 5774 9.786105 CAATCCCAAAACCAAATTATATTTTGC 57.214 29.630 12.58 0.00 39.58 3.68
2106 5775 7.602517 TCCCAAAACCAAATTATATTTTGCG 57.397 32.000 12.58 9.41 39.58 4.85
2107 5776 6.595716 TCCCAAAACCAAATTATATTTTGCGG 59.404 34.615 12.58 13.45 39.58 5.69
2108 5777 6.254480 CCAAAACCAAATTATATTTTGCGGC 58.746 36.000 12.58 0.00 39.58 6.53
2109 5778 6.128172 CCAAAACCAAATTATATTTTGCGGCA 60.128 34.615 12.58 0.00 39.58 5.69
2110 5779 6.660887 AAACCAAATTATATTTTGCGGCAG 57.339 33.333 12.58 4.15 35.67 4.85
2111 5780 4.692228 ACCAAATTATATTTTGCGGCAGG 58.308 39.130 12.58 0.00 35.67 4.85
2112 5781 3.494251 CCAAATTATATTTTGCGGCAGGC 59.506 43.478 12.58 0.00 43.96 4.85
2113 5782 3.385193 AATTATATTTTGCGGCAGGCC 57.615 42.857 1.67 0.00 42.61 5.19
2114 5783 2.065899 TTATATTTTGCGGCAGGCCT 57.934 45.000 0.00 0.00 42.61 5.19
2160 5829 6.588719 ACCAAACTATATTTTGCTGCTTGA 57.411 33.333 9.46 0.00 35.48 3.02
2188 5881 1.400242 GCAACTTTCACGACATGAGCC 60.400 52.381 0.00 0.00 38.99 4.70
2240 5933 3.723348 GCCGAAACAGGTCCGCAC 61.723 66.667 0.00 0.00 0.00 5.34
2241 5934 2.280524 CCGAAACAGGTCCGCACA 60.281 61.111 0.00 0.00 0.00 4.57
2257 5950 1.379443 ACATGCCACATGCTCTGGG 60.379 57.895 7.46 0.00 42.00 4.45
2298 5991 0.542938 CGCCCCTCATCCTCCAGATA 60.543 60.000 0.00 0.00 32.37 1.98
2333 6028 0.973632 CTACACTACACTGCCCACCA 59.026 55.000 0.00 0.00 0.00 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
120 121 7.734538 AGTGTTTTAAAATTTGTCTGTCGTG 57.265 32.000 3.52 0.00 0.00 4.35
178 415 9.346005 TCTTCTTTAATTTTCCTTTACGGTTCT 57.654 29.630 0.00 0.00 0.00 3.01
253 490 9.863845 TTTTCTTCTGTTCTTTCCGTTTTATTT 57.136 25.926 0.00 0.00 0.00 1.40
254 491 9.297586 GTTTTCTTCTGTTCTTTCCGTTTTATT 57.702 29.630 0.00 0.00 0.00 1.40
256 493 7.818642 TGTTTTCTTCTGTTCTTTCCGTTTTA 58.181 30.769 0.00 0.00 0.00 1.52
257 494 6.683715 TGTTTTCTTCTGTTCTTTCCGTTTT 58.316 32.000 0.00 0.00 0.00 2.43
258 495 6.262193 TGTTTTCTTCTGTTCTTTCCGTTT 57.738 33.333 0.00 0.00 0.00 3.60
261 498 9.463443 AAATAATGTTTTCTTCTGTTCTTTCCG 57.537 29.630 0.00 0.00 0.00 4.30
297 534 7.275779 ACGATGAACAGTAAGTATGTGATCAAC 59.724 37.037 0.00 0.00 0.00 3.18
300 537 6.291849 GCACGATGAACAGTAAGTATGTGATC 60.292 42.308 0.00 0.00 0.00 2.92
303 540 4.864806 AGCACGATGAACAGTAAGTATGTG 59.135 41.667 0.00 0.00 0.00 3.21
309 546 9.820229 TTTTAAATAAGCACGATGAACAGTAAG 57.180 29.630 0.00 0.00 0.00 2.34
358 595 9.909043 CGAACAAATCGTAATACATGATAAACA 57.091 29.630 0.00 0.00 46.52 2.83
375 612 9.445786 TCTTTTCAAATACTCAACGAACAAATC 57.554 29.630 0.00 0.00 0.00 2.17
376 613 9.796120 TTCTTTTCAAATACTCAACGAACAAAT 57.204 25.926 0.00 0.00 0.00 2.32
549 786 3.320359 CTGGACCGGCCCAGTAAT 58.680 61.111 27.51 0.00 46.62 1.89
562 799 4.069232 CAGGGAGCGCGAACTGGA 62.069 66.667 12.10 0.00 0.00 3.86
603 840 1.248101 GGTTATTTGCCGCCCACAGT 61.248 55.000 0.00 0.00 0.00 3.55
607 844 2.336478 CGTGGTTATTTGCCGCCCA 61.336 57.895 0.00 0.00 33.21 5.36
616 853 2.619590 CCTAAGTTGGGGCGTGGTTATT 60.620 50.000 0.00 0.00 0.00 1.40
620 857 2.754375 CCTAAGTTGGGGCGTGGT 59.246 61.111 0.00 0.00 0.00 4.16
629 866 1.078426 CCCGGTCAGCCCTAAGTTG 60.078 63.158 0.00 0.00 0.00 3.16
630 867 2.967946 GCCCGGTCAGCCCTAAGTT 61.968 63.158 0.00 0.00 0.00 2.66
633 870 2.690881 ATGCCCGGTCAGCCCTAA 60.691 61.111 0.00 0.00 0.00 2.69
634 871 3.479203 CATGCCCGGTCAGCCCTA 61.479 66.667 0.00 0.00 0.00 3.53
637 874 3.757248 CTACCATGCCCGGTCAGCC 62.757 68.421 0.00 0.00 40.67 4.85
638 875 2.203070 CTACCATGCCCGGTCAGC 60.203 66.667 0.00 0.00 40.67 4.26
639 876 1.144057 GACTACCATGCCCGGTCAG 59.856 63.158 0.00 0.00 40.67 3.51
640 877 2.717044 CGACTACCATGCCCGGTCA 61.717 63.158 0.00 0.00 40.67 4.02
641 878 2.106332 CGACTACCATGCCCGGTC 59.894 66.667 0.00 0.00 40.67 4.79
642 879 3.467226 CCGACTACCATGCCCGGT 61.467 66.667 0.00 0.00 43.46 5.28
643 880 3.441011 GACCGACTACCATGCCCGG 62.441 68.421 0.00 0.00 45.09 5.73
644 881 2.106332 GACCGACTACCATGCCCG 59.894 66.667 0.00 0.00 0.00 6.13
645 882 1.623542 AAGGACCGACTACCATGCCC 61.624 60.000 0.00 0.00 0.00 5.36
646 883 0.462047 CAAGGACCGACTACCATGCC 60.462 60.000 0.00 0.00 0.00 4.40
649 886 1.623542 GCCCAAGGACCGACTACCAT 61.624 60.000 0.00 0.00 0.00 3.55
652 889 1.218316 CAGCCCAAGGACCGACTAC 59.782 63.158 0.00 0.00 0.00 2.73
670 907 1.874320 GCCTAATAGAGCAAGCGACCC 60.874 57.143 0.00 0.00 0.00 4.46
673 910 1.069204 CAGGCCTAATAGAGCAAGCGA 59.931 52.381 3.98 0.00 0.00 4.93
674 911 1.202580 ACAGGCCTAATAGAGCAAGCG 60.203 52.381 3.98 0.00 0.00 4.68
675 912 2.615912 CAACAGGCCTAATAGAGCAAGC 59.384 50.000 3.98 0.00 0.00 4.01
676 913 2.615912 GCAACAGGCCTAATAGAGCAAG 59.384 50.000 3.98 0.00 36.11 4.01
677 914 2.239654 AGCAACAGGCCTAATAGAGCAA 59.760 45.455 3.98 0.00 46.50 3.91
679 916 2.615912 CAAGCAACAGGCCTAATAGAGC 59.384 50.000 3.98 4.16 46.50 4.09
680 917 3.878778 ACAAGCAACAGGCCTAATAGAG 58.121 45.455 3.98 0.00 46.50 2.43
681 918 4.301072 AACAAGCAACAGGCCTAATAGA 57.699 40.909 3.98 0.00 46.50 1.98
682 919 5.048083 TCAAAACAAGCAACAGGCCTAATAG 60.048 40.000 3.98 0.00 46.50 1.73
683 920 4.830046 TCAAAACAAGCAACAGGCCTAATA 59.170 37.500 3.98 0.00 46.50 0.98
684 921 3.640967 TCAAAACAAGCAACAGGCCTAAT 59.359 39.130 3.98 0.00 46.50 1.73
685 922 3.027412 TCAAAACAAGCAACAGGCCTAA 58.973 40.909 3.98 0.00 46.50 2.69
686 923 2.360801 GTCAAAACAAGCAACAGGCCTA 59.639 45.455 3.98 0.00 46.50 3.93
687 924 1.136891 GTCAAAACAAGCAACAGGCCT 59.863 47.619 0.00 0.00 46.50 5.19
688 925 1.134848 TGTCAAAACAAGCAACAGGCC 60.135 47.619 0.00 0.00 46.50 5.19
689 926 2.159254 TCTGTCAAAACAAGCAACAGGC 60.159 45.455 0.00 0.00 45.30 4.85
690 927 3.129287 AGTCTGTCAAAACAAGCAACAGG 59.871 43.478 0.00 0.00 38.27 4.00
691 928 4.361451 AGTCTGTCAAAACAAGCAACAG 57.639 40.909 0.00 0.00 38.91 3.16
692 929 4.484236 CAAGTCTGTCAAAACAAGCAACA 58.516 39.130 0.00 0.00 34.24 3.33
693 930 3.859386 CCAAGTCTGTCAAAACAAGCAAC 59.141 43.478 0.00 0.00 34.24 4.17
694 931 3.119173 CCCAAGTCTGTCAAAACAAGCAA 60.119 43.478 0.00 0.00 34.24 3.91
695 932 2.426738 CCCAAGTCTGTCAAAACAAGCA 59.573 45.455 0.00 0.00 34.24 3.91
696 933 2.799562 GCCCAAGTCTGTCAAAACAAGC 60.800 50.000 0.00 0.00 34.24 4.01
697 934 2.223805 GGCCCAAGTCTGTCAAAACAAG 60.224 50.000 0.00 0.00 34.24 3.16
698 935 1.754226 GGCCCAAGTCTGTCAAAACAA 59.246 47.619 0.00 0.00 34.24 2.83
699 936 1.064017 AGGCCCAAGTCTGTCAAAACA 60.064 47.619 0.00 0.00 0.00 2.83
700 937 1.609072 GAGGCCCAAGTCTGTCAAAAC 59.391 52.381 0.00 0.00 0.00 2.43
701 938 1.478654 GGAGGCCCAAGTCTGTCAAAA 60.479 52.381 0.00 0.00 0.00 2.44
702 939 0.110486 GGAGGCCCAAGTCTGTCAAA 59.890 55.000 0.00 0.00 0.00 2.69
703 940 1.059584 TGGAGGCCCAAGTCTGTCAA 61.060 55.000 0.00 0.00 40.09 3.18
704 941 1.461268 TGGAGGCCCAAGTCTGTCA 60.461 57.895 0.00 0.00 40.09 3.58
705 942 1.194781 TCTGGAGGCCCAAGTCTGTC 61.195 60.000 0.00 0.00 42.98 3.51
706 943 1.152030 TCTGGAGGCCCAAGTCTGT 60.152 57.895 0.00 0.00 42.98 3.41
707 944 1.601171 CTCTGGAGGCCCAAGTCTG 59.399 63.158 0.00 0.00 42.98 3.51
708 945 1.614824 CCTCTGGAGGCCCAAGTCT 60.615 63.158 0.00 0.00 42.98 3.24
709 946 2.993853 CCTCTGGAGGCCCAAGTC 59.006 66.667 0.00 0.00 42.98 3.01
718 955 0.965866 TACTGTGTCCGCCTCTGGAG 60.966 60.000 0.00 0.00 39.14 3.86
719 956 0.541063 TTACTGTGTCCGCCTCTGGA 60.541 55.000 0.00 0.00 35.04 3.86
720 957 0.108615 CTTACTGTGTCCGCCTCTGG 60.109 60.000 0.00 0.00 0.00 3.86
721 958 0.603569 ACTTACTGTGTCCGCCTCTG 59.396 55.000 0.00 0.00 0.00 3.35
722 959 2.093106 CTACTTACTGTGTCCGCCTCT 58.907 52.381 0.00 0.00 0.00 3.69
723 960 1.817447 ACTACTTACTGTGTCCGCCTC 59.183 52.381 0.00 0.00 0.00 4.70
724 961 1.920610 ACTACTTACTGTGTCCGCCT 58.079 50.000 0.00 0.00 0.00 5.52
725 962 2.288640 ACAACTACTTACTGTGTCCGCC 60.289 50.000 0.00 0.00 0.00 6.13
726 963 3.022607 ACAACTACTTACTGTGTCCGC 57.977 47.619 0.00 0.00 0.00 5.54
727 964 4.164294 GCTACAACTACTTACTGTGTCCG 58.836 47.826 0.00 0.00 0.00 4.79
728 965 5.048224 TCTGCTACAACTACTTACTGTGTCC 60.048 44.000 0.00 0.00 0.00 4.02
729 966 6.010294 TCTGCTACAACTACTTACTGTGTC 57.990 41.667 0.00 0.00 0.00 3.67
730 967 6.264744 TCTTCTGCTACAACTACTTACTGTGT 59.735 38.462 0.00 0.00 0.00 3.72
731 968 6.678878 TCTTCTGCTACAACTACTTACTGTG 58.321 40.000 0.00 0.00 0.00 3.66
732 969 6.896021 TCTTCTGCTACAACTACTTACTGT 57.104 37.500 0.00 0.00 0.00 3.55
733 970 6.809196 CCTTCTTCTGCTACAACTACTTACTG 59.191 42.308 0.00 0.00 0.00 2.74
734 971 6.720288 TCCTTCTTCTGCTACAACTACTTACT 59.280 38.462 0.00 0.00 0.00 2.24
735 972 6.921914 TCCTTCTTCTGCTACAACTACTTAC 58.078 40.000 0.00 0.00 0.00 2.34
736 973 6.720288 ACTCCTTCTTCTGCTACAACTACTTA 59.280 38.462 0.00 0.00 0.00 2.24
737 974 5.540719 ACTCCTTCTTCTGCTACAACTACTT 59.459 40.000 0.00 0.00 0.00 2.24
738 975 5.081032 ACTCCTTCTTCTGCTACAACTACT 58.919 41.667 0.00 0.00 0.00 2.57
739 976 5.394224 ACTCCTTCTTCTGCTACAACTAC 57.606 43.478 0.00 0.00 0.00 2.73
740 977 5.775701 AGAACTCCTTCTTCTGCTACAACTA 59.224 40.000 0.00 0.00 32.29 2.24
741 978 4.591072 AGAACTCCTTCTTCTGCTACAACT 59.409 41.667 0.00 0.00 32.29 3.16
742 979 4.888917 AGAACTCCTTCTTCTGCTACAAC 58.111 43.478 0.00 0.00 32.29 3.32
743 980 5.552870 AAGAACTCCTTCTTCTGCTACAA 57.447 39.130 0.00 0.00 42.14 2.41
754 991 4.813296 TTTTTGAGCGAAGAACTCCTTC 57.187 40.909 0.00 0.00 46.05 3.46
772 1009 6.820335 AGAACTCCTGCTGCTTTTAATTTTT 58.180 32.000 0.00 0.00 0.00 1.94
773 1010 6.410942 AGAACTCCTGCTGCTTTTAATTTT 57.589 33.333 0.00 0.00 0.00 1.82
774 1011 7.014230 TGTTAGAACTCCTGCTGCTTTTAATTT 59.986 33.333 0.00 0.00 0.00 1.82
775 1012 6.490040 TGTTAGAACTCCTGCTGCTTTTAATT 59.510 34.615 0.00 0.00 0.00 1.40
776 1013 6.003950 TGTTAGAACTCCTGCTGCTTTTAAT 58.996 36.000 0.00 0.00 0.00 1.40
777 1014 5.373222 TGTTAGAACTCCTGCTGCTTTTAA 58.627 37.500 0.00 0.00 0.00 1.52
778 1015 4.968259 TGTTAGAACTCCTGCTGCTTTTA 58.032 39.130 0.00 0.00 0.00 1.52
789 1026 2.155155 CACGCGAAACTGTTAGAACTCC 59.845 50.000 15.93 0.00 0.00 3.85
794 1031 0.856641 GTGCACGCGAAACTGTTAGA 59.143 50.000 15.93 0.00 0.00 2.10
798 1035 3.636043 CGGTGCACGCGAAACTGT 61.636 61.111 15.93 0.00 34.82 3.55
809 1046 0.947180 GGAAACGAACTAGCGGTGCA 60.947 55.000 0.00 0.00 35.12 4.57
810 1047 1.785951 GGAAACGAACTAGCGGTGC 59.214 57.895 0.00 0.00 35.12 5.01
831 1074 4.445545 GAAGCTTTCGTGGGCGCG 62.446 66.667 0.00 0.00 38.14 6.86
839 1082 0.737715 CCGACCTGGAGAAGCTTTCG 60.738 60.000 0.00 3.76 42.00 3.46
870 1113 7.617041 AAATAGTGTAGAGATGGTTTCTTGC 57.383 36.000 0.00 0.00 33.74 4.01
881 1124 7.228108 CAGGGTCGTGTATAAATAGTGTAGAGA 59.772 40.741 0.00 0.00 0.00 3.10
925 1168 2.284515 ATCGGGGGCCCTGATTGAAC 62.285 60.000 36.60 11.04 46.47 3.18
951 1194 2.631428 CGTTGGTGTTGCTGGACG 59.369 61.111 0.00 0.00 0.00 4.79
953 1196 2.124529 TGCGTTGGTGTTGCTGGA 60.125 55.556 0.00 0.00 0.00 3.86
957 1200 4.980903 CGGCTGCGTTGGTGTTGC 62.981 66.667 0.00 0.00 0.00 4.17
977 1220 3.408927 CGAACTCGAAGCAAAGGCGTC 62.409 57.143 0.00 0.00 43.53 5.19
978 1221 1.557443 CGAACTCGAAGCAAAGGCGT 61.557 55.000 0.00 0.00 43.53 5.68
1045 2786 3.379445 GTCCTTGGTCGGGCTCGA 61.379 66.667 3.45 3.45 43.86 4.04
1276 3017 2.765699 CCTCCTCTTCCTTCTTCTCCTG 59.234 54.545 0.00 0.00 0.00 3.86
1296 3037 3.446050 AGGTCCTCCTCCTCCTCC 58.554 66.667 0.00 0.00 40.58 4.30
1392 3141 5.456265 CAGATCACGGATACACAGATACTG 58.544 45.833 0.00 0.00 37.52 2.74
1393 3142 4.022762 GCAGATCACGGATACACAGATACT 60.023 45.833 0.00 0.00 0.00 2.12
1410 3159 0.671251 CGGAGGGAGTACAGCAGATC 59.329 60.000 0.00 0.00 0.00 2.75
1423 3172 2.870411 CCTTATAAAAGCGAACGGAGGG 59.130 50.000 0.00 0.00 0.00 4.30
1424 3173 2.287103 GCCTTATAAAAGCGAACGGAGG 59.713 50.000 0.00 0.00 0.00 4.30
1425 3174 2.034001 CGCCTTATAAAAGCGAACGGAG 60.034 50.000 19.62 0.00 35.57 4.63
1426 3175 1.928503 CGCCTTATAAAAGCGAACGGA 59.071 47.619 19.62 0.00 35.57 4.69
1427 3176 1.662122 ACGCCTTATAAAAGCGAACGG 59.338 47.619 27.14 7.46 36.44 4.44
1428 3177 3.378959 AACGCCTTATAAAAGCGAACG 57.621 42.857 27.14 8.98 36.44 3.95
1429 3178 4.714851 TGAAACGCCTTATAAAAGCGAAC 58.285 39.130 27.14 19.04 36.44 3.95
1430 3179 4.691685 TCTGAAACGCCTTATAAAAGCGAA 59.308 37.500 27.14 13.60 36.44 4.70
1431 3180 4.092383 GTCTGAAACGCCTTATAAAAGCGA 59.908 41.667 27.14 10.80 36.44 4.93
1432 3181 4.142988 TGTCTGAAACGCCTTATAAAAGCG 60.143 41.667 21.62 21.62 37.86 4.68
1433 3182 5.291293 TGTCTGAAACGCCTTATAAAAGC 57.709 39.130 0.00 0.00 0.00 3.51
1434 3183 5.122396 AGCTGTCTGAAACGCCTTATAAAAG 59.878 40.000 0.00 0.00 0.00 2.27
1435 3184 5.001232 AGCTGTCTGAAACGCCTTATAAAA 58.999 37.500 0.00 0.00 0.00 1.52
1436 3185 4.391830 CAGCTGTCTGAAACGCCTTATAAA 59.608 41.667 5.25 0.00 42.95 1.40
1437 3186 3.932710 CAGCTGTCTGAAACGCCTTATAA 59.067 43.478 5.25 0.00 42.95 0.98
1438 3187 3.521560 CAGCTGTCTGAAACGCCTTATA 58.478 45.455 5.25 0.00 42.95 0.98
1439 3188 2.350522 CAGCTGTCTGAAACGCCTTAT 58.649 47.619 5.25 0.00 42.95 1.73
1440 3189 1.608025 CCAGCTGTCTGAAACGCCTTA 60.608 52.381 13.81 0.00 42.95 2.69
1441 3190 0.886490 CCAGCTGTCTGAAACGCCTT 60.886 55.000 13.81 0.00 42.95 4.35
1442 3191 1.302033 CCAGCTGTCTGAAACGCCT 60.302 57.895 13.81 0.00 42.95 5.52
1443 3192 2.328099 CCCAGCTGTCTGAAACGCC 61.328 63.158 13.81 0.00 42.95 5.68
1444 3193 1.166531 AACCCAGCTGTCTGAAACGC 61.167 55.000 13.81 0.00 42.95 4.84
1445 3194 1.308998 AAACCCAGCTGTCTGAAACG 58.691 50.000 13.81 0.00 42.95 3.60
1446 3195 4.338400 AGTTTAAACCCAGCTGTCTGAAAC 59.662 41.667 13.81 14.76 42.95 2.78
1447 3196 4.338118 CAGTTTAAACCCAGCTGTCTGAAA 59.662 41.667 13.81 3.65 42.95 2.69
1448 3197 3.882888 CAGTTTAAACCCAGCTGTCTGAA 59.117 43.478 13.81 0.00 42.95 3.02
1449 3198 3.118038 ACAGTTTAAACCCAGCTGTCTGA 60.118 43.478 13.81 0.00 42.95 3.27
1450 3199 3.214328 ACAGTTTAAACCCAGCTGTCTG 58.786 45.455 13.81 5.90 35.78 3.51
1451 3200 3.577805 ACAGTTTAAACCCAGCTGTCT 57.422 42.857 13.81 0.00 35.78 3.41
1452 3201 4.649088 AAACAGTTTAAACCCAGCTGTC 57.351 40.909 13.81 0.00 39.19 3.51
1453 3202 5.198207 ACTAAACAGTTTAAACCCAGCTGT 58.802 37.500 13.81 9.24 41.51 4.40
1454 3203 5.767816 ACTAAACAGTTTAAACCCAGCTG 57.232 39.130 14.72 6.78 0.00 4.24
1455 3204 6.261603 GTGTACTAAACAGTTTAAACCCAGCT 59.738 38.462 14.72 0.00 39.29 4.24
1456 3205 6.261603 AGTGTACTAAACAGTTTAAACCCAGC 59.738 38.462 14.72 0.00 38.70 4.85
1457 3206 7.281549 ACAGTGTACTAAACAGTTTAAACCCAG 59.718 37.037 14.72 7.94 39.88 4.45
1458 3207 7.111466 ACAGTGTACTAAACAGTTTAAACCCA 58.889 34.615 14.72 0.07 39.88 4.51
1459 3208 7.496920 AGACAGTGTACTAAACAGTTTAAACCC 59.503 37.037 14.72 1.07 39.88 4.11
1460 3209 8.333186 CAGACAGTGTACTAAACAGTTTAAACC 58.667 37.037 14.72 0.00 39.88 3.27
1461 3210 9.090692 TCAGACAGTGTACTAAACAGTTTAAAC 57.909 33.333 10.47 10.47 39.88 2.01
1462 3211 9.656040 TTCAGACAGTGTACTAAACAGTTTAAA 57.344 29.630 7.18 0.00 39.88 1.52
1463 3212 9.826574 ATTCAGACAGTGTACTAAACAGTTTAA 57.173 29.630 7.18 0.00 39.88 1.52
1464 3213 9.826574 AATTCAGACAGTGTACTAAACAGTTTA 57.173 29.630 5.61 5.61 39.88 2.01
1465 3214 8.732746 AATTCAGACAGTGTACTAAACAGTTT 57.267 30.769 3.49 3.49 39.88 2.66
1466 3215 8.612619 CAAATTCAGACAGTGTACTAAACAGTT 58.387 33.333 0.00 0.00 39.88 3.16
1467 3216 7.254795 GCAAATTCAGACAGTGTACTAAACAGT 60.255 37.037 0.00 0.00 42.76 3.55
1468 3217 7.041780 AGCAAATTCAGACAGTGTACTAAACAG 60.042 37.037 0.00 0.00 39.29 3.16
1469 3218 6.765989 AGCAAATTCAGACAGTGTACTAAACA 59.234 34.615 0.00 0.00 35.06 2.83
1470 3219 7.190920 AGCAAATTCAGACAGTGTACTAAAC 57.809 36.000 0.00 0.00 0.00 2.01
1471 3220 8.896320 TTAGCAAATTCAGACAGTGTACTAAA 57.104 30.769 0.00 0.00 0.00 1.85
1472 3221 8.896320 TTTAGCAAATTCAGACAGTGTACTAA 57.104 30.769 0.00 0.00 0.00 2.24
1473 3222 8.770828 GTTTTAGCAAATTCAGACAGTGTACTA 58.229 33.333 0.00 0.00 0.00 1.82
1474 3223 7.518370 CGTTTTAGCAAATTCAGACAGTGTACT 60.518 37.037 0.00 0.00 0.00 2.73
1475 3224 6.573725 CGTTTTAGCAAATTCAGACAGTGTAC 59.426 38.462 0.00 0.00 0.00 2.90
1476 3225 6.259167 ACGTTTTAGCAAATTCAGACAGTGTA 59.741 34.615 0.00 0.00 0.00 2.90
1477 3226 5.065988 ACGTTTTAGCAAATTCAGACAGTGT 59.934 36.000 0.00 0.00 0.00 3.55
1478 3227 5.510671 ACGTTTTAGCAAATTCAGACAGTG 58.489 37.500 0.00 0.00 0.00 3.66
1479 3228 5.751243 ACGTTTTAGCAAATTCAGACAGT 57.249 34.783 0.00 0.00 0.00 3.55
1480 3229 7.449934 AAAACGTTTTAGCAAATTCAGACAG 57.550 32.000 24.13 0.00 0.00 3.51
1498 3247 9.813446 CTCCCTCTGTTTACTTATATAAAACGT 57.187 33.333 0.00 0.00 36.19 3.99
1499 3248 9.813446 ACTCCCTCTGTTTACTTATATAAAACG 57.187 33.333 0.00 0.00 36.19 3.60
1535 3284 4.687483 CGAAGTACAACAAATTACGTCCCT 59.313 41.667 0.00 0.00 0.00 4.20
1536 3285 4.448732 ACGAAGTACAACAAATTACGTCCC 59.551 41.667 0.00 0.00 41.94 4.46
1539 3288 6.183360 ACCAAACGAAGTACAACAAATTACGT 60.183 34.615 0.00 0.00 45.00 3.57
1549 3298 3.132925 GCTACCACCAAACGAAGTACAA 58.867 45.455 0.00 0.00 45.00 2.41
1745 3530 5.584551 AAACTAAGGGAAACACTGATCCT 57.415 39.130 0.00 0.00 35.95 3.24
1796 5419 0.249868 CAAGCAGGAACGTGACAGGA 60.250 55.000 1.39 0.00 0.00 3.86
1797 5420 1.230635 CCAAGCAGGAACGTGACAGG 61.231 60.000 0.00 0.00 41.22 4.00
1798 5421 0.532862 ACCAAGCAGGAACGTGACAG 60.533 55.000 1.83 0.00 41.22 3.51
1799 5422 0.813610 CACCAAGCAGGAACGTGACA 60.814 55.000 1.83 0.00 41.22 3.58
1800 5423 1.941812 CACCAAGCAGGAACGTGAC 59.058 57.895 1.83 0.00 41.22 3.67
1801 5424 1.891919 GCACCAAGCAGGAACGTGA 60.892 57.895 1.83 0.00 44.79 4.35
1802 5425 2.639286 GCACCAAGCAGGAACGTG 59.361 61.111 1.83 0.00 44.79 4.49
1875 5498 6.317140 CAGTCATATTGCAGGATTACAACACT 59.683 38.462 0.00 0.00 0.00 3.55
1876 5499 6.489675 CAGTCATATTGCAGGATTACAACAC 58.510 40.000 0.00 0.00 0.00 3.32
1877 5500 5.066375 GCAGTCATATTGCAGGATTACAACA 59.934 40.000 0.00 0.00 41.17 3.33
1878 5501 5.297776 AGCAGTCATATTGCAGGATTACAAC 59.702 40.000 0.96 0.00 43.92 3.32
1880 5503 5.039920 AGCAGTCATATTGCAGGATTACA 57.960 39.130 0.96 0.00 43.92 2.41
1881 5504 6.382869 AAAGCAGTCATATTGCAGGATTAC 57.617 37.500 0.96 0.00 43.92 1.89
1882 5505 8.518430 TTAAAAGCAGTCATATTGCAGGATTA 57.482 30.769 0.96 0.00 43.92 1.75
1925 5589 4.517285 CTCTGCATAACCAAGCCTAGAAA 58.483 43.478 0.00 0.00 0.00 2.52
1951 5615 3.118038 TCTTTGGTCTGCACCTACAGTTT 60.118 43.478 0.00 0.00 44.17 2.66
2005 5669 4.561734 GCAGATTTATAGCTAGGCCTCGTT 60.562 45.833 9.68 2.81 0.00 3.85
2066 5735 5.659440 TTTGGGATTGAGCAGATTTAACC 57.341 39.130 0.00 0.00 0.00 2.85
2067 5736 5.869344 GGTTTTGGGATTGAGCAGATTTAAC 59.131 40.000 0.00 0.00 0.00 2.01
2068 5737 5.541868 TGGTTTTGGGATTGAGCAGATTTAA 59.458 36.000 0.00 0.00 0.00 1.52
2069 5738 5.083122 TGGTTTTGGGATTGAGCAGATTTA 58.917 37.500 0.00 0.00 0.00 1.40
2070 5739 3.903090 TGGTTTTGGGATTGAGCAGATTT 59.097 39.130 0.00 0.00 0.00 2.17
2071 5740 3.509442 TGGTTTTGGGATTGAGCAGATT 58.491 40.909 0.00 0.00 0.00 2.40
2072 5741 3.173953 TGGTTTTGGGATTGAGCAGAT 57.826 42.857 0.00 0.00 0.00 2.90
2073 5742 2.673775 TGGTTTTGGGATTGAGCAGA 57.326 45.000 0.00 0.00 0.00 4.26
2074 5743 3.749665 TTTGGTTTTGGGATTGAGCAG 57.250 42.857 0.00 0.00 0.00 4.24
2075 5744 4.703379 AATTTGGTTTTGGGATTGAGCA 57.297 36.364 0.00 0.00 0.00 4.26
2076 5745 8.962884 AATATAATTTGGTTTTGGGATTGAGC 57.037 30.769 0.00 0.00 0.00 4.26
2079 5748 9.786105 GCAAAATATAATTTGGTTTTGGGATTG 57.214 29.630 13.76 0.00 40.23 2.67
2083 5752 6.676700 GCCGCAAAATATAATTTGGTTTTGGG 60.677 38.462 13.76 19.96 45.81 4.12
2084 5753 6.128172 TGCCGCAAAATATAATTTGGTTTTGG 60.128 34.615 13.76 10.48 40.23 3.28
2085 5754 6.835914 TGCCGCAAAATATAATTTGGTTTTG 58.164 32.000 13.76 8.47 41.84 2.44
2086 5755 6.093357 CCTGCCGCAAAATATAATTTGGTTTT 59.907 34.615 13.76 0.00 39.99 2.43
2087 5756 5.584251 CCTGCCGCAAAATATAATTTGGTTT 59.416 36.000 13.76 0.00 39.99 3.27
2088 5757 5.115480 CCTGCCGCAAAATATAATTTGGTT 58.885 37.500 13.76 0.00 39.99 3.67
2089 5758 4.692228 CCTGCCGCAAAATATAATTTGGT 58.308 39.130 13.76 0.00 39.99 3.67
2090 5759 3.494251 GCCTGCCGCAAAATATAATTTGG 59.506 43.478 13.76 5.45 39.99 3.28
2091 5760 3.494251 GGCCTGCCGCAAAATATAATTTG 59.506 43.478 8.63 8.63 42.01 2.32
2092 5761 3.387699 AGGCCTGCCGCAAAATATAATTT 59.612 39.130 3.11 0.00 41.95 1.82
2093 5762 2.965147 AGGCCTGCCGCAAAATATAATT 59.035 40.909 3.11 0.00 41.95 1.40
2094 5763 2.597455 AGGCCTGCCGCAAAATATAAT 58.403 42.857 3.11 0.00 41.95 1.28
2095 5764 2.065899 AGGCCTGCCGCAAAATATAA 57.934 45.000 3.11 0.00 41.95 0.98
2096 5765 2.778299 CTAGGCCTGCCGCAAAATATA 58.222 47.619 17.99 0.00 41.95 0.86
2097 5766 1.609208 CTAGGCCTGCCGCAAAATAT 58.391 50.000 17.99 0.00 41.95 1.28
2098 5767 1.101049 GCTAGGCCTGCCGCAAAATA 61.101 55.000 17.99 0.00 41.95 1.40
2099 5768 2.418083 GCTAGGCCTGCCGCAAAAT 61.418 57.895 17.99 0.00 41.95 1.82
2100 5769 2.191786 TAGCTAGGCCTGCCGCAAAA 62.192 55.000 17.99 2.61 41.95 2.44
2101 5770 2.191786 TTAGCTAGGCCTGCCGCAAA 62.192 55.000 17.99 5.09 41.95 3.68
2102 5771 2.191786 TTTAGCTAGGCCTGCCGCAA 62.192 55.000 17.99 8.64 41.95 4.85
2103 5772 1.983119 ATTTAGCTAGGCCTGCCGCA 61.983 55.000 17.99 4.06 41.95 5.69
2104 5773 1.227973 ATTTAGCTAGGCCTGCCGC 60.228 57.895 17.99 15.37 41.95 6.53
2105 5774 0.394565 AGATTTAGCTAGGCCTGCCG 59.605 55.000 17.99 4.69 41.95 5.69
2106 5775 1.889545 CAGATTTAGCTAGGCCTGCC 58.110 55.000 17.99 5.87 0.00 4.85
2107 5776 1.202746 AGCAGATTTAGCTAGGCCTGC 60.203 52.381 23.96 23.96 45.09 4.85
2108 5777 2.103771 TGAGCAGATTTAGCTAGGCCTG 59.896 50.000 17.99 6.68 43.58 4.85
2109 5778 2.402564 TGAGCAGATTTAGCTAGGCCT 58.597 47.619 11.78 11.78 43.58 5.19
2110 5779 2.918712 TGAGCAGATTTAGCTAGGCC 57.081 50.000 0.00 0.00 43.58 5.19
2111 5780 3.750652 GGATTGAGCAGATTTAGCTAGGC 59.249 47.826 0.00 0.00 43.58 3.93
2112 5781 4.965814 TGGATTGAGCAGATTTAGCTAGG 58.034 43.478 0.00 0.00 43.58 3.02
2113 5782 6.932356 TTTGGATTGAGCAGATTTAGCTAG 57.068 37.500 0.00 0.00 43.58 3.42
2114 5783 6.095440 GGTTTTGGATTGAGCAGATTTAGCTA 59.905 38.462 0.00 0.00 43.58 3.32
2160 5829 1.862201 TCGTGAAAGTTGCGAACGAAT 59.138 42.857 0.00 0.00 40.03 3.34
2211 5904 1.795872 TGTTTCGGCACTTACATCACG 59.204 47.619 0.00 0.00 0.00 4.35
2218 5911 0.320073 CGGACCTGTTTCGGCACTTA 60.320 55.000 0.00 0.00 0.00 2.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.