Multiple sequence alignment - TraesCS7B01G289600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G289600 chr7B 100.000 3176 0 0 1 3176 525027751 525024576 0.000000e+00 5866
1 TraesCS7B01G289600 chr7B 85.621 153 18 3 2589 2741 595804588 595804736 1.180000e-34 158
2 TraesCS7B01G289600 chr7D 91.165 1279 78 9 1 1258 497047547 497046283 0.000000e+00 1703
3 TraesCS7B01G289600 chr7D 95.603 887 31 4 1518 2400 497046285 497045403 0.000000e+00 1415
4 TraesCS7B01G289600 chr7D 85.948 306 19 7 2895 3176 497043521 497043216 3.980000e-79 305
5 TraesCS7B01G289600 chr7D 86.735 98 10 2 2794 2890 247088271 247088366 4.330000e-19 106
6 TraesCS7B01G289600 chr7D 89.744 78 8 0 2509 2586 497043702 497043625 2.020000e-17 100
7 TraesCS7B01G289600 chr7A 95.119 840 19 4 1577 2400 562303572 562302739 0.000000e+00 1304
8 TraesCS7B01G289600 chr7A 88.480 625 58 6 638 1258 562304482 562303868 0.000000e+00 743
9 TraesCS7B01G289600 chr7A 84.488 303 25 5 2895 3176 562302416 562302115 2.410000e-71 279
10 TraesCS7B01G289600 chr7A 81.290 155 27 2 2587 2741 636906663 636906815 1.200000e-24 124
11 TraesCS7B01G289600 chr7A 85.577 104 10 5 2789 2890 4475126 4475026 1.560000e-18 104
12 TraesCS7B01G289600 chr3B 86.435 833 106 6 1612 2438 46469333 46468502 0.000000e+00 905
13 TraesCS7B01G289600 chr3B 86.435 833 106 6 1612 2438 46613469 46612638 0.000000e+00 905
14 TraesCS7B01G289600 chr3B 96.226 265 10 0 1255 1519 581664953 581665217 4.870000e-118 435
15 TraesCS7B01G289600 chr3B 77.600 500 82 16 776 1258 46469896 46469410 3.120000e-70 276
16 TraesCS7B01G289600 chr3B 77.400 500 83 15 776 1258 46614032 46613546 1.450000e-68 270
17 TraesCS7B01G289600 chr5D 87.500 592 70 4 1591 2180 51686380 51686969 0.000000e+00 680
18 TraesCS7B01G289600 chr5D 93.561 264 16 1 1256 1519 60522757 60522495 2.970000e-105 392
19 TraesCS7B01G289600 chr5D 76.233 446 72 16 777 1205 51685792 51686220 4.150000e-49 206
20 TraesCS7B01G289600 chr5D 90.698 86 6 2 2806 2890 80374848 80374764 2.590000e-21 113
21 TraesCS7B01G289600 chr5B 87.500 592 70 4 1591 2180 54702596 54703185 0.000000e+00 680
22 TraesCS7B01G289600 chr5B 76.240 484 77 20 776 1242 54702010 54702472 4.120000e-54 222
23 TraesCS7B01G289600 chr5A 87.331 592 71 4 1591 2180 40720195 40720784 0.000000e+00 675
24 TraesCS7B01G289600 chr4B 98.168 273 5 0 1255 1527 443450811 443450539 7.970000e-131 477
25 TraesCS7B01G289600 chr4B 73.388 605 129 17 1593 2176 660336933 660336340 2.500000e-46 196
26 TraesCS7B01G289600 chr4B 73.665 543 111 17 1603 2125 660358998 660359528 7.000000e-42 182
27 TraesCS7B01G289600 chr2B 96.654 269 9 0 1254 1522 436235935 436235667 6.250000e-122 448
28 TraesCS7B01G289600 chr2A 95.849 265 11 0 1255 1519 492520299 492520035 2.260000e-116 429
29 TraesCS7B01G289600 chr3D 92.933 283 16 4 1256 1536 461592289 461592009 2.950000e-110 409
30 TraesCS7B01G289600 chr3D 93.585 265 13 4 1256 1519 51106613 51106874 2.970000e-105 392
31 TraesCS7B01G289600 chr3D 93.561 264 16 1 1256 1519 346865213 346865475 2.970000e-105 392
32 TraesCS7B01G289600 chr3D 92.937 269 18 1 1251 1519 494599197 494598930 1.070000e-104 390
33 TraesCS7B01G289600 chr1D 90.698 86 6 2 2806 2890 464856774 464856858 2.590000e-21 113
34 TraesCS7B01G289600 chr1D 84.545 110 11 6 2783 2890 68449108 68449213 1.560000e-18 104
35 TraesCS7B01G289600 chr4A 90.698 86 5 3 2806 2890 577318731 577318648 9.310000e-21 111
36 TraesCS7B01G289600 chr1B 87.129 101 7 6 2794 2890 36486509 36486607 3.350000e-20 110
37 TraesCS7B01G289600 chr6D 88.636 88 10 0 2803 2890 445763713 445763626 1.200000e-19 108
38 TraesCS7B01G289600 chrUn 86.139 101 8 6 2794 2890 208649040 208649138 1.560000e-18 104


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G289600 chr7B 525024576 525027751 3175 True 5866.000000 5866 100.000000 1 3176 1 chr7B.!!$R1 3175
1 TraesCS7B01G289600 chr7D 497043216 497047547 4331 True 880.750000 1703 90.615000 1 3176 4 chr7D.!!$R1 3175
2 TraesCS7B01G289600 chr7A 562302115 562304482 2367 True 775.333333 1304 89.362333 638 3176 3 chr7A.!!$R2 2538
3 TraesCS7B01G289600 chr3B 46468502 46469896 1394 True 590.500000 905 82.017500 776 2438 2 chr3B.!!$R1 1662
4 TraesCS7B01G289600 chr3B 46612638 46614032 1394 True 587.500000 905 81.917500 776 2438 2 chr3B.!!$R2 1662
5 TraesCS7B01G289600 chr5D 51685792 51686969 1177 False 443.000000 680 81.866500 777 2180 2 chr5D.!!$F1 1403
6 TraesCS7B01G289600 chr5B 54702010 54703185 1175 False 451.000000 680 81.870000 776 2180 2 chr5B.!!$F1 1404
7 TraesCS7B01G289600 chr5A 40720195 40720784 589 False 675.000000 675 87.331000 1591 2180 1 chr5A.!!$F1 589

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
226 227 0.112606 TATGGAGAGGAGCCCCTACG 59.887 60.0 0.00 0.0 44.53 3.51 F
1159 1205 0.320374 GGCGCCTGGTATGCACTATA 59.680 55.0 22.15 0.0 0.00 1.31 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1261 1312 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.0 6.13 0.0 40.63 4.63 R
2802 4729 0.042131 ATGGGACGGAGGGAGTAACA 59.958 55.0 0.00 0.0 0.00 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 5.007039 GTCGCACATCATGATCATAACTGTT 59.993 40.000 8.15 0.00 0.00 3.16
65 66 4.391830 TGTTCTCAGTCGTCCAAAATATGC 59.608 41.667 0.00 0.00 0.00 3.14
76 77 2.756760 CCAAAATATGCAGCTGGTCTGT 59.243 45.455 17.12 0.00 44.66 3.41
97 98 3.370061 GTCACGTGCTTACATAAGGTTCC 59.630 47.826 11.67 0.00 33.95 3.62
99 100 3.370978 CACGTGCTTACATAAGGTTCCTG 59.629 47.826 0.82 0.00 33.95 3.86
101 102 3.343617 GTGCTTACATAAGGTTCCTGCA 58.656 45.455 1.00 0.00 33.95 4.41
190 191 9.754382 ACTCGTAAAAGTTTCAAGTATCTTACA 57.246 29.630 0.00 0.00 0.00 2.41
226 227 0.112606 TATGGAGAGGAGCCCCTACG 59.887 60.000 0.00 0.00 44.53 3.51
273 275 8.214364 AGATTAAGAAGGAAATATGAGACCCAC 58.786 37.037 0.00 0.00 0.00 4.61
301 304 4.038080 GGTTCAAACCCGCGCCAG 62.038 66.667 0.00 0.00 43.43 4.85
314 317 4.473520 GCCAGCTAGAAGGCGGCA 62.474 66.667 13.08 0.00 44.63 5.69
327 330 2.740055 CGGCACTGCACTCTGACC 60.740 66.667 2.82 0.00 0.00 4.02
369 373 7.557719 CCCATCCACAAGTTTCAAGTATCTAAT 59.442 37.037 0.00 0.00 0.00 1.73
380 384 9.323985 GTTTCAAGTATCTAATCTGAGCATTCT 57.676 33.333 0.00 0.00 0.00 2.40
386 390 8.087750 AGTATCTAATCTGAGCATTCTGTAAGC 58.912 37.037 0.00 0.00 0.00 3.09
392 396 6.727824 TCTGAGCATTCTGTAAGCTTTAAC 57.272 37.500 3.20 0.00 39.02 2.01
424 428 9.573133 AGTAAAAATTGATTTGCCTATTTCTCG 57.427 29.630 0.00 0.00 0.00 4.04
425 429 9.567848 GTAAAAATTGATTTGCCTATTTCTCGA 57.432 29.630 0.00 0.00 0.00 4.04
432 436 2.184533 TGCCTATTTCTCGAAGGGTCA 58.815 47.619 2.39 0.00 0.00 4.02
460 464 2.560981 TCTTCAATATCGGGCATAGCGA 59.439 45.455 0.00 0.00 0.00 4.93
469 473 1.365633 GGCATAGCGAGAGGAGGTG 59.634 63.158 0.00 0.00 0.00 4.00
488 492 4.878397 AGGTGAAGATAAATGTAGTGCAGC 59.122 41.667 0.00 0.00 0.00 5.25
495 499 8.737168 AAGATAAATGTAGTGCAGCATTTAGA 57.263 30.769 23.38 12.70 45.09 2.10
501 506 3.594603 AGTGCAGCATTTAGAGTACGT 57.405 42.857 0.00 0.00 0.00 3.57
510 515 6.792250 CAGCATTTAGAGTACGTGTTCAAAAG 59.208 38.462 0.00 0.00 0.00 2.27
512 517 6.573725 GCATTTAGAGTACGTGTTCAAAAGTG 59.426 38.462 0.00 3.48 0.00 3.16
519 524 5.873164 AGTACGTGTTCAAAAGTGTCTTCTT 59.127 36.000 0.00 0.00 0.00 2.52
554 559 9.360093 ACAACTATTTGAATTAGAGAAGACTCG 57.640 33.333 0.00 0.00 40.72 4.18
630 635 5.788450 TGTGAGGTCATTTGTTGTTGTTTT 58.212 33.333 0.00 0.00 0.00 2.43
649 654 5.813672 TGTTTTGCTAAGTCGTTTGTACTCT 59.186 36.000 0.00 0.00 0.00 3.24
690 695 3.008266 TCACATGCAGTTCTCCTTCATGA 59.992 43.478 8.57 0.00 38.23 3.07
701 706 4.204799 TCTCCTTCATGATTTCTGCATGG 58.795 43.478 0.00 0.00 42.53 3.66
705 710 4.348656 CTTCATGATTTCTGCATGGTTCG 58.651 43.478 0.00 0.00 42.53 3.95
707 712 0.810648 TGATTTCTGCATGGTTCGGC 59.189 50.000 0.00 0.00 0.00 5.54
723 743 3.784701 TCGGCAATCTTCTACTCTGTC 57.215 47.619 0.00 0.00 0.00 3.51
853 873 4.572389 ACCATCAATTAAGTTCTAGCAGCG 59.428 41.667 0.00 0.00 0.00 5.18
894 915 5.578005 TGGTTGATAAGTTCCTCTCGTAG 57.422 43.478 0.00 0.00 0.00 3.51
1158 1204 1.071471 GGCGCCTGGTATGCACTAT 59.929 57.895 22.15 0.00 0.00 2.12
1159 1205 0.320374 GGCGCCTGGTATGCACTATA 59.680 55.000 22.15 0.00 0.00 1.31
1166 1213 6.569780 CGCCTGGTATGCACTATACATATTA 58.430 40.000 0.00 0.00 42.85 0.98
1206 1257 7.097192 TGTGTGTCCTTAATTCTAGTGATGTC 58.903 38.462 0.00 0.00 0.00 3.06
1209 1260 6.253727 GTGTCCTTAATTCTAGTGATGTCGTG 59.746 42.308 0.00 0.00 0.00 4.35
1242 1293 4.689812 GTGATAGCCTAGCATTGATCACAG 59.310 45.833 0.00 0.00 41.69 3.66
1258 1309 5.958380 TGATCACAGATGGAAGGTTACTACT 59.042 40.000 0.00 0.00 0.00 2.57
1259 1310 5.916661 TCACAGATGGAAGGTTACTACTC 57.083 43.478 0.00 0.00 0.00 2.59
1260 1311 4.710375 TCACAGATGGAAGGTTACTACTCC 59.290 45.833 0.00 0.00 0.00 3.85
1261 1312 4.031611 ACAGATGGAAGGTTACTACTCCC 58.968 47.826 0.00 0.00 0.00 4.30
1263 1314 4.342665 CAGATGGAAGGTTACTACTCCCTC 59.657 50.000 0.00 0.00 0.00 4.30
1264 1315 3.111741 TGGAAGGTTACTACTCCCTCC 57.888 52.381 0.00 0.00 0.00 4.30
1265 1316 2.030371 GGAAGGTTACTACTCCCTCCG 58.970 57.143 0.00 0.00 0.00 4.63
1266 1317 2.622714 GGAAGGTTACTACTCCCTCCGT 60.623 54.545 0.00 0.00 0.00 4.69
1267 1318 2.433662 AGGTTACTACTCCCTCCGTC 57.566 55.000 0.00 0.00 0.00 4.79
1268 1319 1.064091 AGGTTACTACTCCCTCCGTCC 60.064 57.143 0.00 0.00 0.00 4.79
1269 1320 1.020437 GTTACTACTCCCTCCGTCCG 58.980 60.000 0.00 0.00 0.00 4.79
1270 1321 0.749454 TTACTACTCCCTCCGTCCGC 60.749 60.000 0.00 0.00 0.00 5.54
1271 1322 2.930385 TACTACTCCCTCCGTCCGCG 62.930 65.000 0.00 0.00 37.95 6.46
1272 1323 4.100084 TACTCCCTCCGTCCGCGA 62.100 66.667 8.23 0.00 41.33 5.87
1275 1326 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
1276 1327 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
1277 1328 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
1278 1329 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
1279 1330 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
1280 1331 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
1281 1332 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
1282 1333 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
1283 1334 1.202222 CCGTCCGCGAATAAGTGTACT 60.202 52.381 8.23 0.00 41.33 2.73
1284 1335 2.523015 CGTCCGCGAATAAGTGTACTT 58.477 47.619 8.23 2.51 41.33 2.24
1285 1336 2.529090 CGTCCGCGAATAAGTGTACTTC 59.471 50.000 8.23 0.00 41.33 3.01
1286 1337 3.730061 CGTCCGCGAATAAGTGTACTTCT 60.730 47.826 8.23 0.00 41.33 2.85
1287 1338 4.494690 CGTCCGCGAATAAGTGTACTTCTA 60.495 45.833 8.23 0.00 41.33 2.10
1288 1339 4.732442 GTCCGCGAATAAGTGTACTTCTAC 59.268 45.833 8.23 0.00 37.40 2.59
1290 1341 4.439153 CCGCGAATAAGTGTACTTCTACCA 60.439 45.833 8.23 0.00 37.40 3.25
1293 1344 6.255020 CGCGAATAAGTGTACTTCTACCATTT 59.745 38.462 0.00 0.00 37.40 2.32
1294 1345 7.201496 CGCGAATAAGTGTACTTCTACCATTTT 60.201 37.037 0.00 0.00 37.40 1.82
1342 1411 8.795842 TTTGACCAACTTGTTAGAAAAGAGTA 57.204 30.769 0.00 0.00 0.00 2.59
1343 1412 8.433421 TTGACCAACTTGTTAGAAAAGAGTAG 57.567 34.615 0.00 0.00 0.00 2.57
1344 1413 7.562135 TGACCAACTTGTTAGAAAAGAGTAGT 58.438 34.615 0.00 0.00 0.00 2.73
1346 1415 9.194271 GACCAACTTGTTAGAAAAGAGTAGTAG 57.806 37.037 0.00 0.00 0.00 2.57
1347 1416 8.148999 ACCAACTTGTTAGAAAAGAGTAGTAGG 58.851 37.037 0.00 0.00 0.00 3.18
1368 1437 9.920946 AGTAGGTTTATATGACATCAAATTGGT 57.079 29.630 0.00 0.00 0.00 3.67
1408 1477 9.436957 ACATTTCAAAACGAATCTAGTGATACT 57.563 29.630 0.00 0.00 32.32 2.12
1431 1500 8.807948 ACTAATTTAGTGTCATAAATGGTGCT 57.192 30.769 8.27 0.00 37.69 4.40
1432 1501 9.899661 ACTAATTTAGTGTCATAAATGGTGCTA 57.100 29.630 8.27 0.00 37.69 3.49
1434 1503 8.807948 AATTTAGTGTCATAAATGGTGCTACT 57.192 30.769 0.00 0.00 35.91 2.57
1435 1504 8.807948 ATTTAGTGTCATAAATGGTGCTACTT 57.192 30.769 0.00 0.00 34.76 2.24
1436 1505 8.630054 TTTAGTGTCATAAATGGTGCTACTTT 57.370 30.769 0.00 0.00 0.00 2.66
1437 1506 8.630054 TTAGTGTCATAAATGGTGCTACTTTT 57.370 30.769 0.00 0.00 0.00 2.27
1438 1507 9.727859 TTAGTGTCATAAATGGTGCTACTTTTA 57.272 29.630 0.00 0.00 0.00 1.52
1439 1508 8.040716 AGTGTCATAAATGGTGCTACTTTTAC 57.959 34.615 0.00 0.00 0.00 2.01
1440 1509 7.120726 AGTGTCATAAATGGTGCTACTTTTACC 59.879 37.037 0.00 0.00 35.05 2.85
1441 1510 7.120726 GTGTCATAAATGGTGCTACTTTTACCT 59.879 37.037 0.00 0.00 35.51 3.08
1442 1511 8.322828 TGTCATAAATGGTGCTACTTTTACCTA 58.677 33.333 0.00 0.00 35.51 3.08
1443 1512 9.338622 GTCATAAATGGTGCTACTTTTACCTAT 57.661 33.333 0.00 0.00 35.51 2.57
1448 1517 9.749340 AAATGGTGCTACTTTTACCTATAAAGT 57.251 29.630 0.00 0.00 45.19 2.66
1449 1518 9.749340 AATGGTGCTACTTTTACCTATAAAGTT 57.251 29.630 6.33 0.00 41.69 2.66
1450 1519 8.556213 TGGTGCTACTTTTACCTATAAAGTTG 57.444 34.615 6.33 6.06 41.69 3.16
1451 1520 7.608761 TGGTGCTACTTTTACCTATAAAGTTGG 59.391 37.037 6.33 2.81 41.69 3.77
1452 1521 7.609146 GGTGCTACTTTTACCTATAAAGTTGGT 59.391 37.037 6.33 0.00 41.69 3.67
1453 1522 8.663025 GTGCTACTTTTACCTATAAAGTTGGTC 58.337 37.037 6.33 0.00 41.69 4.02
1454 1523 8.377034 TGCTACTTTTACCTATAAAGTTGGTCA 58.623 33.333 6.33 0.00 41.69 4.02
1455 1524 9.223099 GCTACTTTTACCTATAAAGTTGGTCAA 57.777 33.333 6.33 0.00 41.69 3.18
1458 1527 9.636789 ACTTTTACCTATAAAGTTGGTCAAAGT 57.363 29.630 14.25 14.25 46.14 2.66
1462 1531 9.629878 TTACCTATAAAGTTGGTCAAAGTTTCA 57.370 29.630 0.00 0.00 40.00 2.69
1463 1532 8.528044 ACCTATAAAGTTGGTCAAAGTTTCAA 57.472 30.769 0.00 0.00 40.00 2.69
1464 1533 8.973182 ACCTATAAAGTTGGTCAAAGTTTCAAA 58.027 29.630 0.00 0.00 40.00 2.69
1465 1534 9.810545 CCTATAAAGTTGGTCAAAGTTTCAAAA 57.189 29.630 0.00 0.00 40.00 2.44
1482 1551 9.974980 AGTTTCAAAACTTTGAGTTAGAACAAA 57.025 25.926 14.47 0.00 46.52 2.83
1485 1554 8.460831 TCAAAACTTTGAGTTAGAACAAAAGC 57.539 30.769 15.21 0.00 41.88 3.51
1486 1555 8.303876 TCAAAACTTTGAGTTAGAACAAAAGCT 58.696 29.630 15.21 5.94 41.88 3.74
1487 1556 9.567848 CAAAACTTTGAGTTAGAACAAAAGCTA 57.432 29.630 15.21 0.00 37.47 3.32
1488 1557 9.788960 AAAACTTTGAGTTAGAACAAAAGCTAG 57.211 29.630 15.21 0.00 37.47 3.42
1489 1558 8.732746 AACTTTGAGTTAGAACAAAAGCTAGA 57.267 30.769 15.21 0.00 36.52 2.43
1490 1559 8.910351 ACTTTGAGTTAGAACAAAAGCTAGAT 57.090 30.769 15.21 0.00 37.89 1.98
1491 1560 8.778358 ACTTTGAGTTAGAACAAAAGCTAGATG 58.222 33.333 15.21 0.00 37.89 2.90
1492 1561 8.677148 TTTGAGTTAGAACAAAAGCTAGATGT 57.323 30.769 0.00 0.00 33.90 3.06
1493 1562 9.772973 TTTGAGTTAGAACAAAAGCTAGATGTA 57.227 29.630 0.00 0.00 33.90 2.29
1494 1563 8.758633 TGAGTTAGAACAAAAGCTAGATGTAC 57.241 34.615 0.00 0.00 0.00 2.90
1495 1564 8.364894 TGAGTTAGAACAAAAGCTAGATGTACA 58.635 33.333 0.00 0.00 0.00 2.90
1496 1565 8.535690 AGTTAGAACAAAAGCTAGATGTACAC 57.464 34.615 0.00 0.00 0.00 2.90
1497 1566 8.368668 AGTTAGAACAAAAGCTAGATGTACACT 58.631 33.333 0.00 0.13 0.00 3.55
1498 1567 8.989980 GTTAGAACAAAAGCTAGATGTACACTT 58.010 33.333 0.00 0.00 0.00 3.16
1501 1570 9.726438 AGAACAAAAGCTAGATGTACACTTATT 57.274 29.630 0.00 0.00 0.00 1.40
1502 1571 9.974750 GAACAAAAGCTAGATGTACACTTATTC 57.025 33.333 0.00 0.00 0.00 1.75
1503 1572 8.186178 ACAAAAGCTAGATGTACACTTATTCG 57.814 34.615 0.00 0.00 0.00 3.34
1504 1573 6.830114 AAAGCTAGATGTACACTTATTCGC 57.170 37.500 0.00 0.00 0.00 4.70
1505 1574 4.537965 AGCTAGATGTACACTTATTCGCG 58.462 43.478 0.00 0.00 0.00 5.87
1506 1575 3.669122 GCTAGATGTACACTTATTCGCGG 59.331 47.826 6.13 0.00 0.00 6.46
1507 1576 4.556104 GCTAGATGTACACTTATTCGCGGA 60.556 45.833 6.13 0.00 0.00 5.54
1508 1577 3.703420 AGATGTACACTTATTCGCGGAC 58.297 45.455 6.13 0.00 0.00 4.79
1509 1578 1.898938 TGTACACTTATTCGCGGACG 58.101 50.000 6.13 0.00 42.01 4.79
1510 1579 1.194495 GTACACTTATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
1511 1580 1.093972 TACACTTATTCGCGGACGGA 58.906 50.000 6.13 0.00 40.63 4.69
1512 1581 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.00 40.63 4.63
1513 1582 0.870307 CACTTATTCGCGGACGGAGG 60.870 60.000 6.13 0.00 40.63 4.30
1514 1583 1.299926 CTTATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
1515 1584 1.731433 CTTATTCGCGGACGGAGGGA 61.731 60.000 6.13 0.00 40.63 4.20
1516 1585 1.731433 TTATTCGCGGACGGAGGGAG 61.731 60.000 6.13 0.00 40.63 4.30
1517 1586 2.898920 TATTCGCGGACGGAGGGAGT 62.899 60.000 6.13 0.00 40.63 3.85
1518 1587 2.898920 ATTCGCGGACGGAGGGAGTA 62.899 60.000 6.13 0.00 40.63 2.59
1519 1588 3.885521 CGCGGACGGAGGGAGTAC 61.886 72.222 0.00 0.00 34.97 2.73
1525 1594 1.688772 GACGGAGGGAGTACATGCTA 58.311 55.000 0.00 0.00 0.00 3.49
1534 1603 8.353684 CGGAGGGAGTACATGCTAATAATATAG 58.646 40.741 0.00 0.00 0.00 1.31
1569 1877 5.615544 GCATTATTACTACATGCTCAAGCCG 60.616 44.000 0.00 0.00 40.23 5.52
1572 1880 0.321564 ACTACATGCTCAAGCCGCAA 60.322 50.000 0.00 0.00 41.26 4.85
1575 1883 1.798725 CATGCTCAAGCCGCAAACG 60.799 57.895 0.00 0.00 41.26 3.60
1588 1900 3.184986 GCCGCAAACGTTACTTTCTAAGA 59.815 43.478 0.00 0.00 37.70 2.10
1786 2098 2.283529 AACACCCTCGGCATCTCGT 61.284 57.895 0.00 0.00 0.00 4.18
1860 2172 2.125753 GCCACTGAGCTCCTCACG 60.126 66.667 12.15 0.00 35.39 4.35
1920 2232 1.140312 ACCCAAACAGGCTCTTCTCA 58.860 50.000 0.00 0.00 35.39 3.27
2142 2454 3.522750 AGAAGGATCTGATTCACTGGCTT 59.477 43.478 0.00 0.00 33.59 4.35
2343 2672 4.784177 TCATGTCATAATGTGCTGGTGAT 58.216 39.130 0.00 0.00 0.00 3.06
2344 2673 4.577283 TCATGTCATAATGTGCTGGTGATG 59.423 41.667 0.00 0.00 0.00 3.07
2345 2674 3.954200 TGTCATAATGTGCTGGTGATGT 58.046 40.909 0.00 0.00 0.00 3.06
2346 2675 4.334552 TGTCATAATGTGCTGGTGATGTT 58.665 39.130 0.00 0.00 0.00 2.71
2392 2726 0.980423 ACAGAGGTGCTCCTTTCTCC 59.020 55.000 9.08 0.00 45.24 3.71
2394 2728 0.178891 AGAGGTGCTCCTTTCTCCCA 60.179 55.000 9.08 0.00 45.24 4.37
2409 2775 5.752036 TTCTCCCATTGCTGATATAGAGG 57.248 43.478 0.00 0.00 0.00 3.69
2416 2782 4.897509 TTGCTGATATAGAGGTCCATGG 57.102 45.455 4.97 4.97 0.00 3.66
2426 2792 4.494091 AGAGGTCCATGGTGTTAATGAG 57.506 45.455 12.58 0.00 0.00 2.90
2454 2820 0.457035 AATGATTGGGCACGCATGTC 59.543 50.000 0.00 0.00 0.00 3.06
2481 2847 8.583810 TTTCTAGACACAGTTTACATGTACAC 57.416 34.615 13.23 13.23 0.00 2.90
2482 2848 6.684686 TCTAGACACAGTTTACATGTACACC 58.315 40.000 16.66 3.52 0.00 4.16
2515 4442 4.846779 TGCCTGACAAGGTAATTTGTTC 57.153 40.909 0.00 0.00 46.43 3.18
2517 4444 4.832266 TGCCTGACAAGGTAATTTGTTCAT 59.168 37.500 0.00 0.00 46.43 2.57
2519 4446 6.491745 TGCCTGACAAGGTAATTTGTTCATTA 59.508 34.615 0.00 0.00 46.43 1.90
2549 4476 1.336755 GATGCAAACTTGTTCCGTGGT 59.663 47.619 0.00 0.00 0.00 4.16
2551 4478 0.736053 GCAAACTTGTTCCGTGGTGA 59.264 50.000 0.00 0.00 0.00 4.02
2552 4479 1.336755 GCAAACTTGTTCCGTGGTGAT 59.663 47.619 0.00 0.00 0.00 3.06
2569 4496 4.406326 TGGTGATAAATCATTTGGCATGCT 59.594 37.500 18.92 0.00 39.30 3.79
2575 4502 4.497291 AATCATTTGGCATGCTGGAAAT 57.503 36.364 18.92 15.63 0.00 2.17
2586 4513 4.379394 GCATGCTGGAAATTTAAGACGTCA 60.379 41.667 19.50 0.00 0.00 4.35
2587 4514 5.698832 CATGCTGGAAATTTAAGACGTCAA 58.301 37.500 19.50 3.53 0.00 3.18
2588 4515 5.759506 TGCTGGAAATTTAAGACGTCAAA 57.240 34.783 19.50 10.90 0.00 2.69
2589 4516 6.137794 TGCTGGAAATTTAAGACGTCAAAA 57.862 33.333 19.50 17.21 0.00 2.44
2590 4517 6.565234 TGCTGGAAATTTAAGACGTCAAAAA 58.435 32.000 19.50 16.86 0.00 1.94
2631 4558 5.419760 GAGTTAACTCTCGTTGGCTTTTT 57.580 39.130 25.30 0.00 39.81 1.94
2652 4579 4.828291 TTTTTATACGAGAAACTCCGCG 57.172 40.909 0.00 0.00 0.00 6.46
2653 4580 3.763097 TTTATACGAGAAACTCCGCGA 57.237 42.857 8.23 0.00 0.00 5.87
2654 4581 3.329743 TTATACGAGAAACTCCGCGAG 57.670 47.619 8.23 5.77 35.52 5.03
2655 4582 0.248539 ATACGAGAAACTCCGCGAGC 60.249 55.000 8.23 0.00 32.04 5.03
2656 4583 2.573341 TACGAGAAACTCCGCGAGCG 62.573 60.000 8.23 10.86 39.44 5.03
2657 4584 3.546397 GAGAAACTCCGCGAGCGC 61.546 66.667 8.23 0.00 38.24 5.92
2674 4601 4.544689 CCGCGAGTCAGAGCCGAG 62.545 72.222 8.23 0.00 0.00 4.63
2675 4602 4.544689 CGCGAGTCAGAGCCGAGG 62.545 72.222 0.00 0.00 0.00 4.63
2676 4603 4.863925 GCGAGTCAGAGCCGAGGC 62.864 72.222 5.89 5.89 42.33 4.70
2686 4613 4.951963 GCCGAGGCTCGAATCCGG 62.952 72.222 36.47 21.10 43.74 5.14
2687 4614 4.286320 CCGAGGCTCGAATCCGGG 62.286 72.222 36.47 15.15 43.74 5.73
2706 4633 4.096003 GGGCTGGCCGCAACTCTA 62.096 66.667 18.87 0.00 41.67 2.43
2707 4634 2.046314 GGCTGGCCGCAACTCTAA 60.046 61.111 18.87 0.00 41.67 2.10
2708 4635 2.399356 GGCTGGCCGCAACTCTAAC 61.399 63.158 18.87 0.00 41.67 2.34
2709 4636 1.671054 GCTGGCCGCAACTCTAACA 60.671 57.895 13.61 0.00 38.92 2.41
2710 4637 1.639298 GCTGGCCGCAACTCTAACAG 61.639 60.000 13.61 0.00 38.92 3.16
2711 4638 1.639298 CTGGCCGCAACTCTAACAGC 61.639 60.000 0.00 0.00 0.00 4.40
2712 4639 1.671054 GGCCGCAACTCTAACAGCA 60.671 57.895 0.00 0.00 0.00 4.41
2713 4640 1.497722 GCCGCAACTCTAACAGCAC 59.502 57.895 0.00 0.00 0.00 4.40
2714 4641 1.227999 GCCGCAACTCTAACAGCACA 61.228 55.000 0.00 0.00 0.00 4.57
2715 4642 1.225855 CCGCAACTCTAACAGCACAA 58.774 50.000 0.00 0.00 0.00 3.33
2716 4643 1.069906 CCGCAACTCTAACAGCACAAC 60.070 52.381 0.00 0.00 0.00 3.32
2717 4644 1.069906 CGCAACTCTAACAGCACAACC 60.070 52.381 0.00 0.00 0.00 3.77
2718 4645 1.946768 GCAACTCTAACAGCACAACCA 59.053 47.619 0.00 0.00 0.00 3.67
2719 4646 2.357637 GCAACTCTAACAGCACAACCAA 59.642 45.455 0.00 0.00 0.00 3.67
2720 4647 3.792124 GCAACTCTAACAGCACAACCAAC 60.792 47.826 0.00 0.00 0.00 3.77
2721 4648 2.210116 ACTCTAACAGCACAACCAACG 58.790 47.619 0.00 0.00 0.00 4.10
2722 4649 1.531149 CTCTAACAGCACAACCAACGG 59.469 52.381 0.00 0.00 0.00 4.44
2723 4650 1.139256 TCTAACAGCACAACCAACGGA 59.861 47.619 0.00 0.00 0.00 4.69
2724 4651 2.151202 CTAACAGCACAACCAACGGAT 58.849 47.619 0.00 0.00 0.00 4.18
2725 4652 0.951558 AACAGCACAACCAACGGATC 59.048 50.000 0.00 0.00 0.00 3.36
2726 4653 1.227999 ACAGCACAACCAACGGATCG 61.228 55.000 0.00 0.00 0.00 3.69
2727 4654 0.948623 CAGCACAACCAACGGATCGA 60.949 55.000 0.00 0.00 0.00 3.59
2728 4655 0.949105 AGCACAACCAACGGATCGAC 60.949 55.000 0.00 0.00 0.00 4.20
2729 4656 1.779061 CACAACCAACGGATCGACG 59.221 57.895 0.00 0.00 40.31 5.12
2730 4657 2.025418 ACAACCAACGGATCGACGC 61.025 57.895 0.00 0.00 37.37 5.19
2731 4658 2.433664 AACCAACGGATCGACGCC 60.434 61.111 0.00 0.00 37.37 5.68
2732 4659 3.945304 AACCAACGGATCGACGCCC 62.945 63.158 0.00 0.00 37.37 6.13
2744 4671 2.511900 ACGCCCCGTCCTCAAAAA 59.488 55.556 0.00 0.00 33.69 1.94
2745 4672 1.074248 ACGCCCCGTCCTCAAAAAT 59.926 52.632 0.00 0.00 33.69 1.82
2746 4673 0.538746 ACGCCCCGTCCTCAAAAATT 60.539 50.000 0.00 0.00 33.69 1.82
2747 4674 1.271488 ACGCCCCGTCCTCAAAAATTA 60.271 47.619 0.00 0.00 33.69 1.40
2748 4675 1.813786 CGCCCCGTCCTCAAAAATTAA 59.186 47.619 0.00 0.00 0.00 1.40
2749 4676 2.159435 CGCCCCGTCCTCAAAAATTAAG 60.159 50.000 0.00 0.00 0.00 1.85
2750 4677 3.086282 GCCCCGTCCTCAAAAATTAAGA 58.914 45.455 0.00 0.00 0.00 2.10
2751 4678 3.119602 GCCCCGTCCTCAAAAATTAAGAC 60.120 47.826 0.00 0.00 0.00 3.01
2752 4679 3.126343 CCCCGTCCTCAAAAATTAAGACG 59.874 47.826 3.52 3.52 44.88 4.18
2753 4680 3.749609 CCCGTCCTCAAAAATTAAGACGT 59.250 43.478 9.20 0.00 44.06 4.34
2754 4681 4.142966 CCCGTCCTCAAAAATTAAGACGTC 60.143 45.833 7.70 7.70 44.06 4.34
2755 4682 4.449743 CCGTCCTCAAAAATTAAGACGTCA 59.550 41.667 19.50 0.00 44.06 4.35
2783 4710 6.785488 TTAACGGATTAAGCAGCATAGATG 57.215 37.500 0.00 0.00 0.00 2.90
2793 4720 2.224233 GCAGCATAGATGGAAGAGCAGA 60.224 50.000 0.00 0.00 0.00 4.26
2796 4723 4.020928 CAGCATAGATGGAAGAGCAGAGAT 60.021 45.833 0.00 0.00 0.00 2.75
2797 4724 5.185442 CAGCATAGATGGAAGAGCAGAGATA 59.815 44.000 0.00 0.00 0.00 1.98
2798 4725 5.959594 AGCATAGATGGAAGAGCAGAGATAT 59.040 40.000 0.00 0.00 0.00 1.63
2799 4726 7.068470 CAGCATAGATGGAAGAGCAGAGATATA 59.932 40.741 0.00 0.00 0.00 0.86
2800 4727 7.618907 AGCATAGATGGAAGAGCAGAGATATAA 59.381 37.037 0.00 0.00 0.00 0.98
2801 4728 8.423349 GCATAGATGGAAGAGCAGAGATATAAT 58.577 37.037 0.00 0.00 0.00 1.28
2804 4731 8.204903 AGATGGAAGAGCAGAGATATAATTGT 57.795 34.615 0.00 0.00 0.00 2.71
2805 4732 8.658619 AGATGGAAGAGCAGAGATATAATTGTT 58.341 33.333 0.00 0.00 0.00 2.83
2806 4733 9.935241 GATGGAAGAGCAGAGATATAATTGTTA 57.065 33.333 0.00 0.00 0.00 2.41
2807 4734 9.717942 ATGGAAGAGCAGAGATATAATTGTTAC 57.282 33.333 0.00 0.00 0.00 2.50
2808 4735 8.928448 TGGAAGAGCAGAGATATAATTGTTACT 58.072 33.333 0.00 0.00 0.00 2.24
2809 4736 9.418045 GGAAGAGCAGAGATATAATTGTTACTC 57.582 37.037 0.00 0.00 0.00 2.59
2810 4737 9.418045 GAAGAGCAGAGATATAATTGTTACTCC 57.582 37.037 0.00 0.00 0.00 3.85
2811 4738 7.902087 AGAGCAGAGATATAATTGTTACTCCC 58.098 38.462 0.00 0.00 0.00 4.30
2812 4739 7.732593 AGAGCAGAGATATAATTGTTACTCCCT 59.267 37.037 0.00 0.00 0.00 4.20
2813 4740 7.902087 AGCAGAGATATAATTGTTACTCCCTC 58.098 38.462 0.00 0.00 0.00 4.30
2814 4741 7.038658 AGCAGAGATATAATTGTTACTCCCTCC 60.039 40.741 0.00 0.00 0.00 4.30
2815 4742 7.316640 CAGAGATATAATTGTTACTCCCTCCG 58.683 42.308 0.00 0.00 0.00 4.63
2816 4743 7.011382 AGAGATATAATTGTTACTCCCTCCGT 58.989 38.462 0.00 0.00 0.00 4.69
2817 4744 7.177041 AGAGATATAATTGTTACTCCCTCCGTC 59.823 40.741 0.00 0.00 0.00 4.79
2818 4745 4.684484 ATAATTGTTACTCCCTCCGTCC 57.316 45.455 0.00 0.00 0.00 4.79
2819 4746 1.201424 ATTGTTACTCCCTCCGTCCC 58.799 55.000 0.00 0.00 0.00 4.46
2820 4747 0.178926 TTGTTACTCCCTCCGTCCCA 60.179 55.000 0.00 0.00 0.00 4.37
2821 4748 0.042131 TGTTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
2822 4749 1.288633 TGTTACTCCCTCCGTCCCATA 59.711 52.381 0.00 0.00 0.00 2.74
2823 4750 2.292389 TGTTACTCCCTCCGTCCCATAA 60.292 50.000 0.00 0.00 0.00 1.90
2830 4757 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
2831 4758 5.269991 TCCCTCCGTCCCATAATATAAGAG 58.730 45.833 0.00 0.00 0.00 2.85
2832 4759 4.141914 CCCTCCGTCCCATAATATAAGAGC 60.142 50.000 0.00 0.00 0.00 4.09
2833 4760 4.466370 CCTCCGTCCCATAATATAAGAGCA 59.534 45.833 0.00 0.00 0.00 4.26
2835 4762 6.352222 CCTCCGTCCCATAATATAAGAGCATT 60.352 42.308 0.00 0.00 0.00 3.56
2837 4764 7.103641 TCCGTCCCATAATATAAGAGCATTTC 58.896 38.462 0.00 0.00 0.00 2.17
2838 4765 6.036083 CCGTCCCATAATATAAGAGCATTTCG 59.964 42.308 0.00 0.00 0.00 3.46
2905 4835 3.553096 GGGAGTATGATGTAGTTGCTCGG 60.553 52.174 0.00 0.00 0.00 4.63
2915 4845 3.765511 TGTAGTTGCTCGGTACCAAGTAT 59.234 43.478 13.54 0.00 31.67 2.12
2916 4846 3.521947 AGTTGCTCGGTACCAAGTATC 57.478 47.619 13.54 1.51 0.00 2.24
2936 4869 6.840705 AGTATCTGCATTCCCAATAATGGTTT 59.159 34.615 0.00 0.00 46.01 3.27
2937 4870 5.341872 TCTGCATTCCCAATAATGGTTTG 57.658 39.130 0.00 0.00 46.01 2.93
2939 4872 5.483231 TCTGCATTCCCAATAATGGTTTGAA 59.517 36.000 0.00 0.00 46.01 2.69
2981 4922 1.344953 ACGCTGGGGCTATCCATGAA 61.345 55.000 0.00 0.00 36.05 2.57
3023 4964 1.905215 AGCAGTGTTGAGCTACATCCT 59.095 47.619 0.00 0.00 39.78 3.24
3031 4972 3.165058 TGAGCTACATCCTTACGCTTG 57.835 47.619 0.00 0.00 0.00 4.01
3043 4984 4.517453 TCCTTACGCTTGTTTTGTGCTTAT 59.483 37.500 0.00 0.00 0.00 1.73
3083 5025 7.650504 TGATAGATTGCGTAGTAACATGGTTAC 59.349 37.037 10.47 10.47 33.12 2.50
3118 5071 1.943968 GCTTGGTAATCACGTGCTCCA 60.944 52.381 11.67 12.94 0.00 3.86
3119 5072 1.732259 CTTGGTAATCACGTGCTCCAC 59.268 52.381 11.67 5.80 0.00 4.02
3120 5073 0.682292 TGGTAATCACGTGCTCCACA 59.318 50.000 11.67 4.31 33.40 4.17
3121 5074 1.277842 TGGTAATCACGTGCTCCACAT 59.722 47.619 11.67 0.00 33.40 3.21
3122 5075 2.498078 TGGTAATCACGTGCTCCACATA 59.502 45.455 11.67 0.00 33.40 2.29
3123 5076 3.133901 TGGTAATCACGTGCTCCACATAT 59.866 43.478 11.67 0.00 33.40 1.78
3125 5078 5.163395 TGGTAATCACGTGCTCCACATATTA 60.163 40.000 11.67 4.37 33.40 0.98
3129 5082 5.733226 TCACGTGCTCCACATATTAATTG 57.267 39.130 11.67 0.00 33.40 2.32
3160 5114 9.742144 TTACTCAGGTATTAATTGCTTTGGTTA 57.258 29.630 0.00 0.00 0.00 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.235831 AGAACAGTTATGATCATGATGTGCG 59.764 40.000 18.72 3.06 30.92 5.34
45 46 4.183865 CTGCATATTTTGGACGACTGAGA 58.816 43.478 0.00 0.00 0.00 3.27
76 77 3.259876 AGGAACCTTATGTAAGCACGTGA 59.740 43.478 22.23 0.00 32.02 4.35
194 195 5.590818 TCCTCTCCATACTGGTCTAGTTTT 58.409 41.667 0.00 0.00 40.89 2.43
200 201 1.412361 GGCTCCTCTCCATACTGGTCT 60.412 57.143 0.00 0.00 39.03 3.85
207 208 0.112606 CGTAGGGGCTCCTCTCCATA 59.887 60.000 9.55 0.00 43.66 2.74
209 210 2.279073 CGTAGGGGCTCCTCTCCA 59.721 66.667 9.55 0.00 43.66 3.86
257 258 4.931661 TCTACGTGGGTCTCATATTTCC 57.068 45.455 0.00 0.00 0.00 3.13
258 259 5.048507 GGTTCTACGTGGGTCTCATATTTC 58.951 45.833 0.00 0.00 0.00 2.17
263 265 0.815734 CGGTTCTACGTGGGTCTCAT 59.184 55.000 0.00 0.00 0.00 2.90
300 303 2.581354 CAGTGCCGCCTTCTAGCT 59.419 61.111 0.00 0.00 0.00 3.32
301 304 3.198489 GCAGTGCCGCCTTCTAGC 61.198 66.667 2.85 0.00 0.00 3.42
311 314 1.963338 GTGGTCAGAGTGCAGTGCC 60.963 63.158 13.72 3.92 0.00 5.01
312 315 1.070445 AGTGGTCAGAGTGCAGTGC 59.930 57.895 8.58 8.58 0.00 4.40
314 317 1.750930 CCAGTGGTCAGAGTGCAGT 59.249 57.895 0.00 0.00 0.00 4.40
348 352 8.777865 TCAGATTAGATACTTGAAACTTGTGG 57.222 34.615 0.00 0.00 0.00 4.17
369 373 6.230472 TGTTAAAGCTTACAGAATGCTCAGA 58.770 36.000 0.00 0.00 42.53 3.27
406 410 4.640201 CCCTTCGAGAAATAGGCAAATCAA 59.360 41.667 0.00 0.00 0.00 2.57
460 464 6.407525 GCACTACATTTATCTTCACCTCCTCT 60.408 42.308 0.00 0.00 0.00 3.69
469 473 8.830580 TCTAAATGCTGCACTACATTTATCTTC 58.169 33.333 18.19 0.00 43.86 2.87
488 492 7.627340 ACACTTTTGAACACGTACTCTAAATG 58.373 34.615 0.00 2.01 0.00 2.32
495 499 5.416947 AGAAGACACTTTTGAACACGTACT 58.583 37.500 0.00 0.00 0.00 2.73
501 506 8.964476 AGAAGATAAGAAGACACTTTTGAACA 57.036 30.769 0.00 0.00 0.00 3.18
510 515 9.646427 AATAGTTGTGAGAAGATAAGAAGACAC 57.354 33.333 0.00 0.00 0.00 3.67
587 592 7.540055 CCTCACAAACAAAAGAATATCAGAAGC 59.460 37.037 0.00 0.00 0.00 3.86
630 635 4.986659 GGAAAGAGTACAAACGACTTAGCA 59.013 41.667 0.00 0.00 30.89 3.49
649 654 7.228108 GCATGTGATCATCATAGAAGAAGGAAA 59.772 37.037 0.00 0.00 31.15 3.13
690 695 1.255882 TTGCCGAACCATGCAGAAAT 58.744 45.000 0.00 0.00 38.95 2.17
701 706 3.851098 ACAGAGTAGAAGATTGCCGAAC 58.149 45.455 0.00 0.00 0.00 3.95
705 710 3.129638 ACGAGACAGAGTAGAAGATTGCC 59.870 47.826 0.00 0.00 0.00 4.52
707 712 4.396478 TGGACGAGACAGAGTAGAAGATTG 59.604 45.833 0.00 0.00 0.00 2.67
723 743 4.032900 CCGACATTACATTTCTTGGACGAG 59.967 45.833 0.00 0.00 0.00 4.18
766 786 8.718102 TCTTCTCCACTAAGTAATTAACATGC 57.282 34.615 0.00 0.00 0.00 4.06
853 873 2.360165 CCAATTGCAATAGTCCCTGCTC 59.640 50.000 13.39 0.00 39.38 4.26
894 915 6.651225 AGCAAATAGAACAAGTCAAGTACTCC 59.349 38.462 0.00 0.00 37.50 3.85
941 976 2.412937 GCAAGCAACAGCGTGGTT 59.587 55.556 5.62 0.00 39.74 3.67
1158 1204 7.008810 CACATGTATACGCGCACATAATATGTA 59.991 37.037 17.77 0.00 42.70 2.29
1159 1205 5.867174 ACATGTATACGCGCACATAATATGT 59.133 36.000 17.77 13.84 46.22 2.29
1166 1213 1.592543 CACACATGTATACGCGCACAT 59.407 47.619 5.73 11.05 35.79 3.21
1206 1257 3.938963 AGGCTATCACAACATTAACCACG 59.061 43.478 0.00 0.00 0.00 4.94
1209 1260 5.123227 TGCTAGGCTATCACAACATTAACC 58.877 41.667 0.00 0.00 0.00 2.85
1242 1293 4.940905 GAGGGAGTAGTAACCTTCCATC 57.059 50.000 0.00 0.00 34.02 3.51
1258 1309 1.731433 CTTATTCGCGGACGGAGGGA 61.731 60.000 6.13 0.00 40.63 4.20
1259 1310 1.299926 CTTATTCGCGGACGGAGGG 60.300 63.158 6.13 0.00 40.63 4.30
1260 1311 0.870307 CACTTATTCGCGGACGGAGG 60.870 60.000 6.13 0.00 40.63 4.30
1261 1312 0.179145 ACACTTATTCGCGGACGGAG 60.179 55.000 6.13 0.00 40.63 4.63
1263 1314 1.194495 GTACACTTATTCGCGGACGG 58.806 55.000 6.13 0.00 40.63 4.79
1264 1315 2.184385 AGTACACTTATTCGCGGACG 57.816 50.000 6.13 0.00 42.01 4.79
1265 1316 3.767278 AGAAGTACACTTATTCGCGGAC 58.233 45.455 6.13 0.00 36.11 4.79
1266 1317 4.201950 GGTAGAAGTACACTTATTCGCGGA 60.202 45.833 6.13 0.00 36.11 5.54
1267 1318 4.040376 GGTAGAAGTACACTTATTCGCGG 58.960 47.826 6.13 0.00 36.11 6.46
1268 1319 4.665212 TGGTAGAAGTACACTTATTCGCG 58.335 43.478 0.00 0.00 36.11 5.87
1269 1320 7.535489 AAATGGTAGAAGTACACTTATTCGC 57.465 36.000 0.00 0.00 36.11 4.70
1316 1367 8.117813 ACTCTTTTCTAACAAGTTGGTCAAAA 57.882 30.769 7.96 8.79 0.00 2.44
1319 1370 7.562135 ACTACTCTTTTCTAACAAGTTGGTCA 58.438 34.615 7.96 0.00 0.00 4.02
1320 1371 9.194271 CTACTACTCTTTTCTAACAAGTTGGTC 57.806 37.037 7.96 0.00 0.00 4.02
1321 1372 8.148999 CCTACTACTCTTTTCTAACAAGTTGGT 58.851 37.037 7.96 2.53 0.00 3.67
1323 1392 9.543783 AACCTACTACTCTTTTCTAACAAGTTG 57.456 33.333 0.00 0.00 0.00 3.16
1342 1411 9.920946 ACCAATTTGATGTCATATAAACCTACT 57.079 29.630 0.00 0.00 0.00 2.57
1382 1451 9.436957 AGTATCACTAGATTCGTTTTGAAATGT 57.563 29.630 0.00 0.00 40.71 2.71
1405 1474 9.899661 AGCACCATTTATGACACTAAATTAGTA 57.100 29.630 5.23 0.00 37.23 1.82
1406 1475 8.807948 AGCACCATTTATGACACTAAATTAGT 57.192 30.769 0.00 0.00 40.28 2.24
1408 1477 9.899661 AGTAGCACCATTTATGACACTAAATTA 57.100 29.630 0.00 0.00 30.68 1.40
1409 1478 8.807948 AGTAGCACCATTTATGACACTAAATT 57.192 30.769 0.00 0.00 30.68 1.82
1410 1479 8.807948 AAGTAGCACCATTTATGACACTAAAT 57.192 30.769 0.00 0.00 32.76 1.40
1411 1480 8.630054 AAAGTAGCACCATTTATGACACTAAA 57.370 30.769 0.00 0.00 0.00 1.85
1412 1481 8.630054 AAAAGTAGCACCATTTATGACACTAA 57.370 30.769 0.00 0.00 0.00 2.24
1413 1482 9.158233 GTAAAAGTAGCACCATTTATGACACTA 57.842 33.333 0.00 0.00 0.00 2.74
1414 1483 7.120726 GGTAAAAGTAGCACCATTTATGACACT 59.879 37.037 0.00 0.00 32.32 3.55
1415 1484 7.120726 AGGTAAAAGTAGCACCATTTATGACAC 59.879 37.037 0.00 0.00 34.62 3.67
1416 1485 7.172342 AGGTAAAAGTAGCACCATTTATGACA 58.828 34.615 0.00 0.00 34.62 3.58
1417 1486 7.625828 AGGTAAAAGTAGCACCATTTATGAC 57.374 36.000 0.00 0.00 34.62 3.06
1422 1491 9.749340 ACTTTATAGGTAAAAGTAGCACCATTT 57.251 29.630 0.00 0.00 43.54 2.32
1423 1492 9.749340 AACTTTATAGGTAAAAGTAGCACCATT 57.251 29.630 1.96 0.00 44.35 3.16
1424 1493 9.174166 CAACTTTATAGGTAAAAGTAGCACCAT 57.826 33.333 1.96 0.00 44.35 3.55
1425 1494 7.608761 CCAACTTTATAGGTAAAAGTAGCACCA 59.391 37.037 1.96 0.00 44.35 4.17
1426 1495 7.609146 ACCAACTTTATAGGTAAAAGTAGCACC 59.391 37.037 1.96 0.00 44.35 5.01
1427 1496 8.557592 ACCAACTTTATAGGTAAAAGTAGCAC 57.442 34.615 1.96 0.00 44.35 4.40
1428 1497 8.377034 TGACCAACTTTATAGGTAAAAGTAGCA 58.623 33.333 1.96 0.00 44.35 3.49
1429 1498 8.782339 TGACCAACTTTATAGGTAAAAGTAGC 57.218 34.615 1.96 0.00 44.35 3.58
1436 1505 9.629878 TGAAACTTTGACCAACTTTATAGGTAA 57.370 29.630 0.00 0.00 35.36 2.85
1437 1506 9.629878 TTGAAACTTTGACCAACTTTATAGGTA 57.370 29.630 0.00 0.00 35.36 3.08
1438 1507 8.528044 TTGAAACTTTGACCAACTTTATAGGT 57.472 30.769 0.00 0.00 38.63 3.08
1439 1508 9.810545 TTTTGAAACTTTGACCAACTTTATAGG 57.189 29.630 0.00 0.00 0.00 2.57
1459 1528 8.921670 GCTTTTGTTCTAACTCAAAGTTTTGAA 58.078 29.630 8.48 1.77 45.61 2.69
1460 1529 8.303876 AGCTTTTGTTCTAACTCAAAGTTTTGA 58.696 29.630 7.06 7.06 44.31 2.69
1461 1530 8.466086 AGCTTTTGTTCTAACTCAAAGTTTTG 57.534 30.769 14.34 0.00 39.51 2.44
1462 1531 9.788960 CTAGCTTTTGTTCTAACTCAAAGTTTT 57.211 29.630 0.00 7.66 39.51 2.43
1463 1532 9.174166 TCTAGCTTTTGTTCTAACTCAAAGTTT 57.826 29.630 0.00 0.00 39.51 2.66
1464 1533 8.732746 TCTAGCTTTTGTTCTAACTCAAAGTT 57.267 30.769 0.00 12.26 41.97 2.66
1465 1534 8.778358 CATCTAGCTTTTGTTCTAACTCAAAGT 58.222 33.333 0.00 8.02 35.47 2.66
1466 1535 8.778358 ACATCTAGCTTTTGTTCTAACTCAAAG 58.222 33.333 0.00 11.01 35.47 2.77
1467 1536 8.677148 ACATCTAGCTTTTGTTCTAACTCAAA 57.323 30.769 0.00 0.00 32.75 2.69
1468 1537 9.204570 GTACATCTAGCTTTTGTTCTAACTCAA 57.795 33.333 0.00 0.00 0.00 3.02
1469 1538 8.364894 TGTACATCTAGCTTTTGTTCTAACTCA 58.635 33.333 0.00 0.00 0.00 3.41
1470 1539 8.648968 GTGTACATCTAGCTTTTGTTCTAACTC 58.351 37.037 0.00 0.00 0.00 3.01
1471 1540 8.368668 AGTGTACATCTAGCTTTTGTTCTAACT 58.631 33.333 0.00 0.00 0.00 2.24
1472 1541 8.535690 AGTGTACATCTAGCTTTTGTTCTAAC 57.464 34.615 0.00 0.00 0.00 2.34
1475 1544 9.726438 AATAAGTGTACATCTAGCTTTTGTTCT 57.274 29.630 0.00 0.00 0.00 3.01
1476 1545 9.974750 GAATAAGTGTACATCTAGCTTTTGTTC 57.025 33.333 0.00 0.63 0.00 3.18
1477 1546 8.656849 CGAATAAGTGTACATCTAGCTTTTGTT 58.343 33.333 0.00 0.00 0.00 2.83
1478 1547 7.201530 GCGAATAAGTGTACATCTAGCTTTTGT 60.202 37.037 0.00 0.00 0.00 2.83
1479 1548 7.119997 GCGAATAAGTGTACATCTAGCTTTTG 58.880 38.462 0.00 0.00 0.00 2.44
1480 1549 6.019801 CGCGAATAAGTGTACATCTAGCTTTT 60.020 38.462 0.00 0.00 0.00 2.27
1481 1550 5.459107 CGCGAATAAGTGTACATCTAGCTTT 59.541 40.000 0.00 0.00 0.00 3.51
1482 1551 4.976731 CGCGAATAAGTGTACATCTAGCTT 59.023 41.667 0.00 0.00 0.00 3.74
1483 1552 4.537965 CGCGAATAAGTGTACATCTAGCT 58.462 43.478 0.00 0.00 0.00 3.32
1484 1553 3.669122 CCGCGAATAAGTGTACATCTAGC 59.331 47.826 8.23 0.00 0.00 3.42
1485 1554 4.910456 GTCCGCGAATAAGTGTACATCTAG 59.090 45.833 8.23 0.00 0.00 2.43
1486 1555 4.553351 CGTCCGCGAATAAGTGTACATCTA 60.553 45.833 8.23 0.00 41.33 1.98
1487 1556 3.703420 GTCCGCGAATAAGTGTACATCT 58.297 45.455 8.23 0.00 0.00 2.90
1488 1557 2.466571 CGTCCGCGAATAAGTGTACATC 59.533 50.000 8.23 0.00 41.33 3.06
1489 1558 2.456989 CGTCCGCGAATAAGTGTACAT 58.543 47.619 8.23 0.00 41.33 2.29
1490 1559 1.467883 CCGTCCGCGAATAAGTGTACA 60.468 52.381 8.23 0.00 41.33 2.90
1491 1560 1.194495 CCGTCCGCGAATAAGTGTAC 58.806 55.000 8.23 0.00 41.33 2.90
1492 1561 1.064505 CTCCGTCCGCGAATAAGTGTA 59.935 52.381 8.23 0.00 41.33 2.90
1493 1562 0.179145 CTCCGTCCGCGAATAAGTGT 60.179 55.000 8.23 0.00 41.33 3.55
1494 1563 0.870307 CCTCCGTCCGCGAATAAGTG 60.870 60.000 8.23 0.00 41.33 3.16
1495 1564 1.436336 CCTCCGTCCGCGAATAAGT 59.564 57.895 8.23 0.00 41.33 2.24
1496 1565 1.299926 CCCTCCGTCCGCGAATAAG 60.300 63.158 8.23 0.00 41.33 1.73
1497 1566 1.731433 CTCCCTCCGTCCGCGAATAA 61.731 60.000 8.23 0.00 41.33 1.40
1498 1567 2.124193 TCCCTCCGTCCGCGAATA 60.124 61.111 8.23 0.00 41.33 1.75
1499 1568 2.898920 TACTCCCTCCGTCCGCGAAT 62.899 60.000 8.23 0.00 41.33 3.34
1500 1569 3.626996 TACTCCCTCCGTCCGCGAA 62.627 63.158 8.23 0.00 41.33 4.70
1501 1570 4.100084 TACTCCCTCCGTCCGCGA 62.100 66.667 8.23 0.00 41.33 5.87
1502 1571 3.885521 GTACTCCCTCCGTCCGCG 61.886 72.222 0.00 0.00 37.95 6.46
1503 1572 2.125961 ATGTACTCCCTCCGTCCGC 61.126 63.158 0.00 0.00 0.00 5.54
1504 1573 1.734137 CATGTACTCCCTCCGTCCG 59.266 63.158 0.00 0.00 0.00 4.79
1505 1574 1.043673 AGCATGTACTCCCTCCGTCC 61.044 60.000 0.00 0.00 0.00 4.79
1506 1575 1.688772 TAGCATGTACTCCCTCCGTC 58.311 55.000 0.00 0.00 0.00 4.79
1507 1576 2.154567 TTAGCATGTACTCCCTCCGT 57.845 50.000 0.00 0.00 0.00 4.69
1508 1577 4.866508 TTATTAGCATGTACTCCCTCCG 57.133 45.455 0.00 0.00 0.00 4.63
1509 1578 9.422681 TCTATATTATTAGCATGTACTCCCTCC 57.577 37.037 0.00 0.00 0.00 4.30
1511 1580 9.998752 ACTCTATATTATTAGCATGTACTCCCT 57.001 33.333 0.00 0.00 0.00 4.20
1569 1877 9.821662 ACATAAATCTTAGAAAGTAACGTTTGC 57.178 29.630 5.91 0.00 0.00 3.68
1588 1900 7.279981 TGCACGCATAGAGAAAGTAACATAAAT 59.720 33.333 0.00 0.00 0.00 1.40
1610 1922 1.438651 TCCATTTACTCGCACTGCAC 58.561 50.000 1.11 0.00 0.00 4.57
1713 2025 1.272769 ACGTTAGACCTGACCTTGCTC 59.727 52.381 0.00 0.00 0.00 4.26
1749 2061 3.053544 TGTTGAGGCCGGGGAAATTTATA 60.054 43.478 2.18 0.00 0.00 0.98
1786 2098 0.809636 CCATAGTCGATGCGTGCCAA 60.810 55.000 0.00 0.00 33.79 4.52
1860 2172 2.997897 AGTGTCCCCTCGAGCACC 60.998 66.667 6.99 0.00 32.75 5.01
2142 2454 2.342406 TCCCCCAGAACTGAGATTGA 57.658 50.000 3.19 0.00 0.00 2.57
2343 2672 8.877779 CCATTCATTAAACAGTGAAAACAAACA 58.122 29.630 0.00 0.00 37.82 2.83
2344 2673 9.092876 TCCATTCATTAAACAGTGAAAACAAAC 57.907 29.630 0.00 0.00 37.82 2.93
2345 2674 9.658799 TTCCATTCATTAAACAGTGAAAACAAA 57.341 25.926 0.00 0.00 37.82 2.83
2346 2675 9.829507 ATTCCATTCATTAAACAGTGAAAACAA 57.170 25.926 0.00 0.00 37.82 2.83
2392 2726 4.897509 TGGACCTCTATATCAGCAATGG 57.102 45.455 0.00 0.00 0.00 3.16
2394 2728 4.848660 ACCATGGACCTCTATATCAGCAAT 59.151 41.667 21.47 0.00 0.00 3.56
2409 2775 4.458989 TGCTTTCTCATTAACACCATGGAC 59.541 41.667 21.47 0.00 0.00 4.02
2416 2782 8.804743 CAATCATTGATGCTTTCTCATTAACAC 58.195 33.333 0.00 0.00 0.00 3.32
2426 2792 3.192466 GTGCCCAATCATTGATGCTTTC 58.808 45.455 0.00 0.00 32.01 2.62
2454 2820 9.203421 TGTACATGTAAACTGTGTCTAGAAATG 57.797 33.333 7.25 0.00 0.00 2.32
2481 2847 3.594134 TGTCAGGCAAAAACAAGTTTGG 58.406 40.909 0.00 0.00 38.64 3.28
2482 2848 4.093261 CCTTGTCAGGCAAAAACAAGTTTG 59.907 41.667 15.08 0.00 45.32 2.93
2515 4442 7.439056 ACAAGTTTGCATCTCTTGGTTTTAATG 59.561 33.333 21.35 5.13 41.64 1.90
2517 4444 6.872920 ACAAGTTTGCATCTCTTGGTTTTAA 58.127 32.000 21.35 0.00 41.64 1.52
2519 4446 5.343307 ACAAGTTTGCATCTCTTGGTTTT 57.657 34.783 21.35 6.22 41.64 2.43
2549 4476 4.650131 TCCAGCATGCCAAATGATTTATCA 59.350 37.500 15.66 0.00 36.41 2.15
2551 4478 5.617528 TTCCAGCATGCCAAATGATTTAT 57.382 34.783 15.66 0.00 31.97 1.40
2552 4479 5.417754 TTTCCAGCATGCCAAATGATTTA 57.582 34.783 15.66 0.00 31.97 1.40
2631 4558 4.484236 TCGCGGAGTTTCTCGTATAAAAA 58.516 39.130 6.13 0.00 0.00 1.94
2632 4559 4.095410 TCGCGGAGTTTCTCGTATAAAA 57.905 40.909 6.13 0.00 0.00 1.52
2633 4560 3.688272 CTCGCGGAGTTTCTCGTATAAA 58.312 45.455 6.13 0.00 0.00 1.40
2634 4561 2.540361 GCTCGCGGAGTTTCTCGTATAA 60.540 50.000 6.13 0.00 31.39 0.98
2635 4562 1.003116 GCTCGCGGAGTTTCTCGTATA 60.003 52.381 6.13 0.00 31.39 1.47
2636 4563 0.248539 GCTCGCGGAGTTTCTCGTAT 60.249 55.000 6.13 0.00 31.39 3.06
2637 4564 1.136147 GCTCGCGGAGTTTCTCGTA 59.864 57.895 6.13 0.00 31.39 3.43
2638 4565 2.126424 GCTCGCGGAGTTTCTCGT 60.126 61.111 6.13 0.00 31.39 4.18
2639 4566 3.241059 CGCTCGCGGAGTTTCTCG 61.241 66.667 6.13 0.00 35.56 4.04
2640 4567 3.546397 GCGCTCGCGGAGTTTCTC 61.546 66.667 13.56 0.00 40.19 2.87
2657 4584 4.544689 CTCGGCTCTGACTCGCGG 62.545 72.222 6.13 0.00 0.00 6.46
2658 4585 4.544689 CCTCGGCTCTGACTCGCG 62.545 72.222 0.00 0.00 0.00 5.87
2659 4586 4.863925 GCCTCGGCTCTGACTCGC 62.864 72.222 0.00 0.00 38.26 5.03
2669 4596 4.951963 CCGGATTCGAGCCTCGGC 62.952 72.222 15.08 0.00 40.88 5.54
2670 4597 4.286320 CCCGGATTCGAGCCTCGG 62.286 72.222 15.08 10.29 40.88 4.63
2671 4598 4.951963 GCCCGGATTCGAGCCTCG 62.952 72.222 8.05 8.05 42.10 4.63
2672 4599 4.951963 CGCCCGGATTCGAGCCTC 62.952 72.222 0.73 0.00 36.77 4.70
2692 4619 1.639298 GCTGTTAGAGTTGCGGCCAG 61.639 60.000 2.24 0.00 0.00 4.85
2693 4620 1.671054 GCTGTTAGAGTTGCGGCCA 60.671 57.895 2.24 0.00 0.00 5.36
2694 4621 1.671054 TGCTGTTAGAGTTGCGGCC 60.671 57.895 0.00 0.00 33.88 6.13
2695 4622 1.227999 TGTGCTGTTAGAGTTGCGGC 61.228 55.000 0.00 0.00 35.26 6.53
2696 4623 1.069906 GTTGTGCTGTTAGAGTTGCGG 60.070 52.381 0.00 0.00 0.00 5.69
2697 4624 1.069906 GGTTGTGCTGTTAGAGTTGCG 60.070 52.381 0.00 0.00 0.00 4.85
2698 4625 1.946768 TGGTTGTGCTGTTAGAGTTGC 59.053 47.619 0.00 0.00 0.00 4.17
2699 4626 3.546020 CGTTGGTTGTGCTGTTAGAGTTG 60.546 47.826 0.00 0.00 0.00 3.16
2700 4627 2.612212 CGTTGGTTGTGCTGTTAGAGTT 59.388 45.455 0.00 0.00 0.00 3.01
2701 4628 2.210116 CGTTGGTTGTGCTGTTAGAGT 58.790 47.619 0.00 0.00 0.00 3.24
2702 4629 1.531149 CCGTTGGTTGTGCTGTTAGAG 59.469 52.381 0.00 0.00 0.00 2.43
2703 4630 1.139256 TCCGTTGGTTGTGCTGTTAGA 59.861 47.619 0.00 0.00 0.00 2.10
2704 4631 1.588674 TCCGTTGGTTGTGCTGTTAG 58.411 50.000 0.00 0.00 0.00 2.34
2705 4632 2.147958 GATCCGTTGGTTGTGCTGTTA 58.852 47.619 0.00 0.00 0.00 2.41
2706 4633 0.951558 GATCCGTTGGTTGTGCTGTT 59.048 50.000 0.00 0.00 0.00 3.16
2707 4634 1.227999 CGATCCGTTGGTTGTGCTGT 61.228 55.000 0.00 0.00 0.00 4.40
2708 4635 0.948623 TCGATCCGTTGGTTGTGCTG 60.949 55.000 0.00 0.00 0.00 4.41
2709 4636 0.949105 GTCGATCCGTTGGTTGTGCT 60.949 55.000 0.00 0.00 0.00 4.40
2710 4637 1.495951 GTCGATCCGTTGGTTGTGC 59.504 57.895 0.00 0.00 0.00 4.57
2711 4638 1.779061 CGTCGATCCGTTGGTTGTG 59.221 57.895 0.00 0.00 0.00 3.33
2712 4639 2.025418 GCGTCGATCCGTTGGTTGT 61.025 57.895 0.00 0.00 0.00 3.32
2713 4640 2.736682 GGCGTCGATCCGTTGGTTG 61.737 63.158 0.00 0.00 0.00 3.77
2714 4641 2.433664 GGCGTCGATCCGTTGGTT 60.434 61.111 0.00 0.00 0.00 3.67
2715 4642 4.446413 GGGCGTCGATCCGTTGGT 62.446 66.667 0.00 0.00 0.00 3.67
2727 4654 0.538746 AATTTTTGAGGACGGGGCGT 60.539 50.000 0.00 0.00 45.10 5.68
2728 4655 1.455248 TAATTTTTGAGGACGGGGCG 58.545 50.000 0.00 0.00 0.00 6.13
2729 4656 3.086282 TCTTAATTTTTGAGGACGGGGC 58.914 45.455 0.00 0.00 0.00 5.80
2730 4657 3.126343 CGTCTTAATTTTTGAGGACGGGG 59.874 47.826 0.00 0.00 41.50 5.73
2731 4658 3.749609 ACGTCTTAATTTTTGAGGACGGG 59.250 43.478 13.15 0.00 46.80 5.28
2732 4659 4.449743 TGACGTCTTAATTTTTGAGGACGG 59.550 41.667 17.92 0.00 46.80 4.79
2734 4661 6.017357 AGGTTGACGTCTTAATTTTTGAGGAC 60.017 38.462 17.92 0.00 0.00 3.85
2735 4662 6.059484 AGGTTGACGTCTTAATTTTTGAGGA 58.941 36.000 17.92 0.00 0.00 3.71
2736 4663 6.313744 AGGTTGACGTCTTAATTTTTGAGG 57.686 37.500 17.92 0.00 0.00 3.86
2737 4664 9.724839 TTAAAGGTTGACGTCTTAATTTTTGAG 57.275 29.630 17.92 0.00 0.00 3.02
2738 4665 9.505995 GTTAAAGGTTGACGTCTTAATTTTTGA 57.494 29.630 17.92 4.55 0.00 2.69
2739 4666 8.466026 CGTTAAAGGTTGACGTCTTAATTTTTG 58.534 33.333 17.92 3.62 32.52 2.44
2740 4667 7.644945 CCGTTAAAGGTTGACGTCTTAATTTTT 59.355 33.333 17.92 11.63 35.17 1.94
2741 4668 7.012232 TCCGTTAAAGGTTGACGTCTTAATTTT 59.988 33.333 17.92 12.57 35.17 1.82
2742 4669 6.482973 TCCGTTAAAGGTTGACGTCTTAATTT 59.517 34.615 17.92 14.19 35.17 1.82
2743 4670 5.990996 TCCGTTAAAGGTTGACGTCTTAATT 59.009 36.000 17.92 8.06 35.17 1.40
2744 4671 5.540911 TCCGTTAAAGGTTGACGTCTTAAT 58.459 37.500 17.92 1.00 35.17 1.40
2745 4672 4.942852 TCCGTTAAAGGTTGACGTCTTAA 58.057 39.130 17.92 9.72 35.17 1.85
2746 4673 4.582701 TCCGTTAAAGGTTGACGTCTTA 57.417 40.909 17.92 3.57 35.17 2.10
2747 4674 3.457610 TCCGTTAAAGGTTGACGTCTT 57.542 42.857 17.92 4.63 35.17 3.01
2748 4675 3.672767 ATCCGTTAAAGGTTGACGTCT 57.327 42.857 17.92 0.00 35.17 4.18
2749 4676 5.669602 GCTTAATCCGTTAAAGGTTGACGTC 60.670 44.000 9.11 9.11 35.17 4.34
2750 4677 4.152938 GCTTAATCCGTTAAAGGTTGACGT 59.847 41.667 7.34 0.00 35.17 4.34
2751 4678 4.152759 TGCTTAATCCGTTAAAGGTTGACG 59.847 41.667 7.34 0.00 36.61 4.35
2752 4679 5.616488 TGCTTAATCCGTTAAAGGTTGAC 57.384 39.130 7.34 0.00 29.86 3.18
2753 4680 4.155280 GCTGCTTAATCCGTTAAAGGTTGA 59.845 41.667 7.34 0.00 29.86 3.18
2754 4681 4.083003 TGCTGCTTAATCCGTTAAAGGTTG 60.083 41.667 7.34 0.00 29.86 3.77
2755 4682 4.076394 TGCTGCTTAATCCGTTAAAGGTT 58.924 39.130 7.34 4.33 29.86 3.50
2783 4710 9.418045 GAGTAACAATTATATCTCTGCTCTTCC 57.582 37.037 0.00 0.00 0.00 3.46
2793 4720 6.210984 GGACGGAGGGAGTAACAATTATATCT 59.789 42.308 0.00 0.00 0.00 1.98
2796 4723 4.590222 GGGACGGAGGGAGTAACAATTATA 59.410 45.833 0.00 0.00 0.00 0.98
2797 4724 3.390311 GGGACGGAGGGAGTAACAATTAT 59.610 47.826 0.00 0.00 0.00 1.28
2798 4725 2.767960 GGGACGGAGGGAGTAACAATTA 59.232 50.000 0.00 0.00 0.00 1.40
2799 4726 1.558294 GGGACGGAGGGAGTAACAATT 59.442 52.381 0.00 0.00 0.00 2.32
2800 4727 1.201424 GGGACGGAGGGAGTAACAAT 58.799 55.000 0.00 0.00 0.00 2.71
2801 4728 0.178926 TGGGACGGAGGGAGTAACAA 60.179 55.000 0.00 0.00 0.00 2.83
2802 4729 0.042131 ATGGGACGGAGGGAGTAACA 59.958 55.000 0.00 0.00 0.00 2.41
2803 4730 2.077687 TATGGGACGGAGGGAGTAAC 57.922 55.000 0.00 0.00 0.00 2.50
2804 4731 2.852714 TTATGGGACGGAGGGAGTAA 57.147 50.000 0.00 0.00 0.00 2.24
2805 4732 4.687262 ATATTATGGGACGGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
2806 4733 3.562108 ATATTATGGGACGGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
2807 4734 5.269991 TCTTATATTATGGGACGGAGGGAG 58.730 45.833 0.00 0.00 0.00 4.30
2808 4735 5.269991 CTCTTATATTATGGGACGGAGGGA 58.730 45.833 0.00 0.00 0.00 4.20
2809 4736 4.141914 GCTCTTATATTATGGGACGGAGGG 60.142 50.000 0.00 0.00 0.00 4.30
2810 4737 4.466370 TGCTCTTATATTATGGGACGGAGG 59.534 45.833 0.00 0.00 0.00 4.30
2811 4738 5.661056 TGCTCTTATATTATGGGACGGAG 57.339 43.478 0.00 0.00 0.00 4.63
2812 4739 6.620877 AATGCTCTTATATTATGGGACGGA 57.379 37.500 0.00 0.00 0.00 4.69
2813 4740 6.036083 CGAAATGCTCTTATATTATGGGACGG 59.964 42.308 0.00 0.00 0.00 4.79
2814 4741 6.590292 ACGAAATGCTCTTATATTATGGGACG 59.410 38.462 0.00 0.00 0.00 4.79
2815 4742 7.743104 CACGAAATGCTCTTATATTATGGGAC 58.257 38.462 0.00 0.00 0.00 4.46
2816 4743 7.905604 CACGAAATGCTCTTATATTATGGGA 57.094 36.000 0.00 0.00 0.00 4.37
2869 4799 7.734865 ACATCATACTCCCTCTGTTCCATAATA 59.265 37.037 0.00 0.00 0.00 0.98
2875 4805 4.896482 ACTACATCATACTCCCTCTGTTCC 59.104 45.833 0.00 0.00 0.00 3.62
2879 4809 4.343526 AGCAACTACATCATACTCCCTCTG 59.656 45.833 0.00 0.00 0.00 3.35
2880 4810 4.551671 AGCAACTACATCATACTCCCTCT 58.448 43.478 0.00 0.00 0.00 3.69
2884 4814 3.068307 ACCGAGCAACTACATCATACTCC 59.932 47.826 0.00 0.00 0.00 3.85
2885 4815 4.308899 ACCGAGCAACTACATCATACTC 57.691 45.455 0.00 0.00 0.00 2.59
2886 4816 4.037684 GGTACCGAGCAACTACATCATACT 59.962 45.833 0.00 0.00 0.00 2.12
2887 4817 4.202080 TGGTACCGAGCAACTACATCATAC 60.202 45.833 7.57 0.00 0.00 2.39
2888 4818 3.955551 TGGTACCGAGCAACTACATCATA 59.044 43.478 7.57 0.00 0.00 2.15
2889 4819 2.764010 TGGTACCGAGCAACTACATCAT 59.236 45.455 7.57 0.00 0.00 2.45
2890 4820 2.172679 TGGTACCGAGCAACTACATCA 58.827 47.619 7.57 0.00 0.00 3.07
2893 4823 1.965643 ACTTGGTACCGAGCAACTACA 59.034 47.619 26.68 0.00 38.13 2.74
2905 4835 4.150897 TGGGAATGCAGATACTTGGTAC 57.849 45.455 0.00 0.00 0.00 3.34
2936 4869 4.069304 CCCCATCTTTCGTGTTTACTTCA 58.931 43.478 0.00 0.00 0.00 3.02
2937 4870 3.119955 GCCCCATCTTTCGTGTTTACTTC 60.120 47.826 0.00 0.00 0.00 3.01
2939 4872 2.224670 TGCCCCATCTTTCGTGTTTACT 60.225 45.455 0.00 0.00 0.00 2.24
2999 4940 1.546029 TGTAGCTCAACACTGCTCGAT 59.454 47.619 0.00 0.00 40.35 3.59
3000 4941 0.958822 TGTAGCTCAACACTGCTCGA 59.041 50.000 0.00 0.00 40.35 4.04
3023 4964 4.517453 AGGATAAGCACAAAACAAGCGTAA 59.483 37.500 0.00 0.00 0.00 3.18
3083 5025 6.854496 TTACCAAGCACTAACTTGTTGTAG 57.146 37.500 3.82 0.00 44.55 2.74
3150 5104 7.693952 GTTCGATCAAGATAATAACCAAAGCA 58.306 34.615 0.00 0.00 0.00 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.