Multiple sequence alignment - TraesCS7B01G289300

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G289300 chr7B 100.000 4361 0 0 1 4361 524905900 524910260 0.000000e+00 8054
1 TraesCS7B01G289300 chr7B 90.050 201 17 2 151 348 554524155 554524355 1.560000e-64 257
2 TraesCS7B01G289300 chr7A 94.507 3732 140 28 349 4066 562169827 562173507 0.000000e+00 5696
3 TraesCS7B01G289300 chr7A 90.260 308 20 3 4061 4358 562173689 562173996 1.140000e-105 394
4 TraesCS7B01G289300 chr7D 94.363 3743 149 29 349 4066 496776662 496780367 0.000000e+00 5686
5 TraesCS7B01G289300 chr7D 93.857 293 10 2 4061 4351 496780417 496780703 6.700000e-118 435
6 TraesCS7B01G289300 chr5B 89.706 204 18 2 152 352 262824405 262824608 1.560000e-64 257
7 TraesCS7B01G289300 chr3B 90.000 200 18 1 151 348 518618203 518618402 1.560000e-64 257
8 TraesCS7B01G289300 chr3B 85.075 201 25 4 152 348 755654399 755654200 2.660000e-47 200
9 TraesCS7B01G289300 chr2D 88.500 200 20 2 152 348 82890011 82889812 5.640000e-59 239
10 TraesCS7B01G289300 chr2D 86.628 172 22 1 178 348 35567577 35567406 5.760000e-44 189
11 TraesCS7B01G289300 chr2B 87.097 217 21 3 139 348 556597427 556597211 5.640000e-59 239
12 TraesCS7B01G289300 chr2B 87.500 200 22 2 152 348 667666298 667666497 1.220000e-55 228
13 TraesCS7B01G289300 chr6B 87.791 172 20 1 178 348 141015279 141015450 2.660000e-47 200


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G289300 chr7B 524905900 524910260 4360 False 8054.0 8054 100.0000 1 4361 1 chr7B.!!$F1 4360
1 TraesCS7B01G289300 chr7A 562169827 562173996 4169 False 3045.0 5696 92.3835 349 4358 2 chr7A.!!$F1 4009
2 TraesCS7B01G289300 chr7D 496776662 496780703 4041 False 3060.5 5686 94.1100 349 4351 2 chr7D.!!$F1 4002

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
416 417 0.253394 CCCCCTCCCTCTTTCCTTCT 60.253 60.0 0.00 0.0 0.00 2.85 F
441 442 0.315788 CGACAGAGATCGAGCAGACG 60.316 60.0 2.38 0.8 45.13 4.18 F
1917 1931 0.953960 GAACCGTGGCTTCGTGGAAT 60.954 55.0 2.67 0.0 0.00 3.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2139 2153 1.419381 TGCACTTGGAGTACACCTCA 58.581 50.0 10.86 0.0 42.4 3.86 R
2286 2300 7.172868 TGGTGCAATACATTCTTTCATCATT 57.827 32.0 0.00 0.0 0.0 2.57 R
3413 3427 0.241213 CTCGACTCGACTTCCAGCAA 59.759 55.0 0.00 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 8.757982 ACATCATTTATTGGATAGAAAGCTGT 57.242 30.769 0.00 0.00 0.00 4.40
46 47 9.193806 ACATCATTTATTGGATAGAAAGCTGTT 57.806 29.630 0.00 0.00 0.00 3.16
49 50 9.120538 TCATTTATTGGATAGAAAGCTGTTACC 57.879 33.333 0.00 0.00 0.00 2.85
50 51 8.902806 CATTTATTGGATAGAAAGCTGTTACCA 58.097 33.333 0.00 0.00 0.00 3.25
51 52 8.871629 TTTATTGGATAGAAAGCTGTTACCAA 57.128 30.769 0.00 0.00 39.79 3.67
52 53 9.474313 TTTATTGGATAGAAAGCTGTTACCAAT 57.526 29.630 19.28 19.28 45.01 3.16
55 56 8.871629 TTGGATAGAAAGCTGTTACCAATAAA 57.128 30.769 0.00 0.00 32.40 1.40
56 57 9.474313 TTGGATAGAAAGCTGTTACCAATAAAT 57.526 29.630 0.00 0.00 32.40 1.40
57 58 9.474313 TGGATAGAAAGCTGTTACCAATAAATT 57.526 29.630 0.00 0.00 0.00 1.82
80 81 8.929260 ATTTACATCATCTATTTGCATCTCCA 57.071 30.769 0.00 0.00 0.00 3.86
81 82 8.750515 TTTACATCATCTATTTGCATCTCCAA 57.249 30.769 0.00 0.00 0.00 3.53
82 83 6.879276 ACATCATCTATTTGCATCTCCAAG 57.121 37.500 0.00 0.00 0.00 3.61
83 84 6.363065 ACATCATCTATTTGCATCTCCAAGT 58.637 36.000 0.00 0.00 0.00 3.16
84 85 6.262496 ACATCATCTATTTGCATCTCCAAGTG 59.738 38.462 0.00 0.00 0.00 3.16
85 86 5.748402 TCATCTATTTGCATCTCCAAGTGT 58.252 37.500 0.00 0.00 0.00 3.55
86 87 6.182627 TCATCTATTTGCATCTCCAAGTGTT 58.817 36.000 0.00 0.00 0.00 3.32
87 88 6.660521 TCATCTATTTGCATCTCCAAGTGTTT 59.339 34.615 0.00 0.00 0.00 2.83
88 89 6.258230 TCTATTTGCATCTCCAAGTGTTTG 57.742 37.500 0.00 0.00 0.00 2.93
89 90 6.003326 TCTATTTGCATCTCCAAGTGTTTGA 58.997 36.000 0.00 0.00 36.36 2.69
90 91 4.572985 TTTGCATCTCCAAGTGTTTGAG 57.427 40.909 0.00 0.00 36.36 3.02
91 92 1.881973 TGCATCTCCAAGTGTTTGAGC 59.118 47.619 0.00 0.00 36.36 4.26
92 93 1.881973 GCATCTCCAAGTGTTTGAGCA 59.118 47.619 0.00 0.00 36.36 4.26
93 94 2.294233 GCATCTCCAAGTGTTTGAGCAA 59.706 45.455 0.00 0.00 36.36 3.91
94 95 3.854784 GCATCTCCAAGTGTTTGAGCAAC 60.855 47.826 0.00 0.00 36.36 4.17
95 96 2.997980 TCTCCAAGTGTTTGAGCAACA 58.002 42.857 0.00 0.00 43.55 3.33
105 106 4.376146 TGTTTGAGCAACATTTTTAGGCC 58.624 39.130 0.00 0.00 40.71 5.19
106 107 4.100808 TGTTTGAGCAACATTTTTAGGCCT 59.899 37.500 11.78 11.78 40.71 5.19
107 108 4.519540 TTGAGCAACATTTTTAGGCCTC 57.480 40.909 9.68 0.00 0.00 4.70
108 109 2.487762 TGAGCAACATTTTTAGGCCTCG 59.512 45.455 9.68 0.00 0.00 4.63
109 110 2.747446 GAGCAACATTTTTAGGCCTCGA 59.253 45.455 9.68 0.00 0.00 4.04
110 111 3.356290 AGCAACATTTTTAGGCCTCGAT 58.644 40.909 9.68 0.00 0.00 3.59
111 112 3.129287 AGCAACATTTTTAGGCCTCGATG 59.871 43.478 9.68 12.09 0.00 3.84
112 113 3.128589 GCAACATTTTTAGGCCTCGATGA 59.871 43.478 9.68 0.00 0.00 2.92
113 114 4.202050 GCAACATTTTTAGGCCTCGATGAT 60.202 41.667 9.68 1.36 0.00 2.45
114 115 5.276270 CAACATTTTTAGGCCTCGATGATG 58.724 41.667 9.68 11.34 0.00 3.07
115 116 3.885297 ACATTTTTAGGCCTCGATGATGG 59.115 43.478 9.68 0.00 0.00 3.51
116 117 3.924114 TTTTTAGGCCTCGATGATGGA 57.076 42.857 9.68 0.00 0.00 3.41
117 118 3.924114 TTTTAGGCCTCGATGATGGAA 57.076 42.857 9.68 0.00 0.00 3.53
118 119 3.924114 TTTAGGCCTCGATGATGGAAA 57.076 42.857 9.68 0.00 0.00 3.13
119 120 3.924114 TTAGGCCTCGATGATGGAAAA 57.076 42.857 9.68 0.00 0.00 2.29
120 121 2.806945 AGGCCTCGATGATGGAAAAA 57.193 45.000 0.00 0.00 0.00 1.94
121 122 2.648059 AGGCCTCGATGATGGAAAAAG 58.352 47.619 0.00 0.00 0.00 2.27
122 123 2.025887 AGGCCTCGATGATGGAAAAAGT 60.026 45.455 0.00 0.00 0.00 2.66
123 124 2.755103 GGCCTCGATGATGGAAAAAGTT 59.245 45.455 0.00 0.00 0.00 2.66
124 125 3.193479 GGCCTCGATGATGGAAAAAGTTT 59.807 43.478 0.00 0.00 0.00 2.66
125 126 4.415735 GCCTCGATGATGGAAAAAGTTTC 58.584 43.478 0.00 0.00 0.00 2.78
126 127 4.156739 GCCTCGATGATGGAAAAAGTTTCT 59.843 41.667 1.11 0.00 0.00 2.52
127 128 5.354234 GCCTCGATGATGGAAAAAGTTTCTA 59.646 40.000 1.11 0.00 0.00 2.10
128 129 6.128007 GCCTCGATGATGGAAAAAGTTTCTAA 60.128 38.462 1.11 0.00 0.00 2.10
129 130 7.574967 GCCTCGATGATGGAAAAAGTTTCTAAA 60.575 37.037 1.11 0.00 0.00 1.85
130 131 8.462016 CCTCGATGATGGAAAAAGTTTCTAAAT 58.538 33.333 1.11 0.00 0.00 1.40
131 132 9.846248 CTCGATGATGGAAAAAGTTTCTAAATT 57.154 29.630 1.11 0.00 0.00 1.82
132 133 9.840427 TCGATGATGGAAAAAGTTTCTAAATTC 57.160 29.630 1.11 0.00 0.00 2.17
133 134 9.624697 CGATGATGGAAAAAGTTTCTAAATTCA 57.375 29.630 1.11 0.00 0.00 2.57
136 137 9.709495 TGATGGAAAAAGTTTCTAAATTCATGG 57.291 29.630 0.00 0.00 0.00 3.66
137 138 9.154847 GATGGAAAAAGTTTCTAAATTCATGGG 57.845 33.333 0.00 0.00 0.00 4.00
138 139 8.256356 TGGAAAAAGTTTCTAAATTCATGGGA 57.744 30.769 0.00 0.00 0.00 4.37
139 140 8.879227 TGGAAAAAGTTTCTAAATTCATGGGAT 58.121 29.630 0.00 0.00 0.00 3.85
146 147 9.753674 AGTTTCTAAATTCATGGGATACAAAGA 57.246 29.630 0.00 0.00 39.74 2.52
147 148 9.788960 GTTTCTAAATTCATGGGATACAAAGAC 57.211 33.333 0.00 0.00 39.74 3.01
148 149 9.527157 TTTCTAAATTCATGGGATACAAAGACA 57.473 29.630 0.00 0.00 39.74 3.41
149 150 9.699410 TTCTAAATTCATGGGATACAAAGACAT 57.301 29.630 0.00 0.00 39.74 3.06
153 154 8.915057 AATTCATGGGATACAAAGACATAGAG 57.085 34.615 0.00 0.00 39.74 2.43
154 155 7.437713 TTCATGGGATACAAAGACATAGAGT 57.562 36.000 0.00 0.00 39.74 3.24
155 156 7.055667 TCATGGGATACAAAGACATAGAGTC 57.944 40.000 0.00 0.00 43.60 3.36
170 171 7.559590 ACATAGAGTCTAATTGGTTTGATGC 57.440 36.000 3.45 0.00 0.00 3.91
171 172 6.543831 ACATAGAGTCTAATTGGTTTGATGCC 59.456 38.462 3.45 0.00 0.00 4.40
172 173 4.922206 AGAGTCTAATTGGTTTGATGCCA 58.078 39.130 0.00 0.00 0.00 4.92
207 208 7.495135 CCAATTGTTGGCAAGTCTAAAATTT 57.505 32.000 0.00 0.00 45.17 1.82
208 209 7.354257 CCAATTGTTGGCAAGTCTAAAATTTG 58.646 34.615 0.00 0.00 45.17 2.32
209 210 7.226325 CCAATTGTTGGCAAGTCTAAAATTTGA 59.774 33.333 0.00 0.00 45.17 2.69
210 211 7.713764 ATTGTTGGCAAGTCTAAAATTTGAC 57.286 32.000 0.00 0.00 38.10 3.18
211 212 5.277825 TGTTGGCAAGTCTAAAATTTGACG 58.722 37.500 0.00 0.00 37.86 4.35
212 213 3.896122 TGGCAAGTCTAAAATTTGACGC 58.104 40.909 0.00 0.00 37.86 5.19
213 214 3.568007 TGGCAAGTCTAAAATTTGACGCT 59.432 39.130 0.00 0.00 37.86 5.07
214 215 4.159120 GGCAAGTCTAAAATTTGACGCTC 58.841 43.478 0.00 0.00 37.86 5.03
215 216 4.320202 GGCAAGTCTAAAATTTGACGCTCA 60.320 41.667 0.00 0.00 37.86 4.26
216 217 5.212194 GCAAGTCTAAAATTTGACGCTCAA 58.788 37.500 0.00 0.00 37.86 3.02
217 218 5.858581 GCAAGTCTAAAATTTGACGCTCAAT 59.141 36.000 0.00 0.00 36.11 2.57
218 219 6.363357 GCAAGTCTAAAATTTGACGCTCAATT 59.637 34.615 0.00 0.00 36.11 2.32
219 220 7.617935 GCAAGTCTAAAATTTGACGCTCAATTG 60.618 37.037 0.00 0.00 36.11 2.32
220 221 6.381801 AGTCTAAAATTTGACGCTCAATTGG 58.618 36.000 5.42 0.00 36.11 3.16
221 222 6.016276 AGTCTAAAATTTGACGCTCAATTGGT 60.016 34.615 5.42 0.00 36.11 3.67
222 223 6.640907 GTCTAAAATTTGACGCTCAATTGGTT 59.359 34.615 5.42 0.00 36.11 3.67
223 224 5.655893 AAAATTTGACGCTCAATTGGTTG 57.344 34.783 5.42 0.00 36.11 3.77
224 225 2.791383 TTTGACGCTCAATTGGTTGG 57.209 45.000 5.42 0.00 36.11 3.77
225 226 0.313672 TTGACGCTCAATTGGTTGGC 59.686 50.000 5.42 4.80 35.99 4.52
226 227 0.537143 TGACGCTCAATTGGTTGGCT 60.537 50.000 5.42 0.00 35.99 4.75
227 228 1.271108 TGACGCTCAATTGGTTGGCTA 60.271 47.619 5.42 0.00 35.99 3.93
228 229 2.017049 GACGCTCAATTGGTTGGCTAT 58.983 47.619 5.42 0.00 35.99 2.97
229 230 2.017049 ACGCTCAATTGGTTGGCTATC 58.983 47.619 5.42 0.00 35.99 2.08
230 231 2.016318 CGCTCAATTGGTTGGCTATCA 58.984 47.619 5.42 0.00 35.99 2.15
231 232 2.423185 CGCTCAATTGGTTGGCTATCAA 59.577 45.455 5.42 0.00 35.99 2.57
232 233 3.067180 CGCTCAATTGGTTGGCTATCAAT 59.933 43.478 5.42 1.43 37.73 2.57
233 234 4.440525 CGCTCAATTGGTTGGCTATCAATT 60.441 41.667 13.28 13.28 40.44 2.32
236 237 5.088680 CAATTGGTTGGCTATCAATTGGT 57.911 39.130 28.55 0.00 46.59 3.67
237 238 5.490159 CAATTGGTTGGCTATCAATTGGTT 58.510 37.500 28.55 6.30 46.59 3.67
238 239 5.760484 ATTGGTTGGCTATCAATTGGTTT 57.240 34.783 5.42 0.00 37.73 3.27
239 240 5.559148 TTGGTTGGCTATCAATTGGTTTT 57.441 34.783 5.42 0.00 37.73 2.43
240 241 5.559148 TGGTTGGCTATCAATTGGTTTTT 57.441 34.783 5.42 0.00 37.73 1.94
241 242 5.303971 TGGTTGGCTATCAATTGGTTTTTG 58.696 37.500 5.42 0.00 37.73 2.44
242 243 4.154015 GGTTGGCTATCAATTGGTTTTTGC 59.846 41.667 5.42 1.74 37.73 3.68
243 244 4.888326 TGGCTATCAATTGGTTTTTGCT 57.112 36.364 5.42 0.00 0.00 3.91
244 245 4.819769 TGGCTATCAATTGGTTTTTGCTC 58.180 39.130 5.42 0.00 0.00 4.26
245 246 4.282957 TGGCTATCAATTGGTTTTTGCTCA 59.717 37.500 5.42 0.63 0.00 4.26
246 247 5.046448 TGGCTATCAATTGGTTTTTGCTCAT 60.046 36.000 5.42 0.00 0.00 2.90
247 248 5.521372 GGCTATCAATTGGTTTTTGCTCATC 59.479 40.000 5.42 0.00 0.00 2.92
248 249 6.335777 GCTATCAATTGGTTTTTGCTCATCT 58.664 36.000 5.42 0.00 0.00 2.90
249 250 6.474751 GCTATCAATTGGTTTTTGCTCATCTC 59.525 38.462 5.42 0.00 0.00 2.75
250 251 6.600882 ATCAATTGGTTTTTGCTCATCTCT 57.399 33.333 5.42 0.00 0.00 3.10
251 252 6.017400 TCAATTGGTTTTTGCTCATCTCTC 57.983 37.500 5.42 0.00 0.00 3.20
252 253 5.535783 TCAATTGGTTTTTGCTCATCTCTCA 59.464 36.000 5.42 0.00 0.00 3.27
253 254 6.040729 TCAATTGGTTTTTGCTCATCTCTCAA 59.959 34.615 5.42 0.00 0.00 3.02
254 255 5.850557 TTGGTTTTTGCTCATCTCTCAAA 57.149 34.783 0.00 0.00 0.00 2.69
255 256 5.850557 TGGTTTTTGCTCATCTCTCAAAA 57.149 34.783 0.00 0.00 37.75 2.44
256 257 6.219417 TGGTTTTTGCTCATCTCTCAAAAA 57.781 33.333 7.69 7.69 43.27 1.94
257 258 6.275335 TGGTTTTTGCTCATCTCTCAAAAAG 58.725 36.000 11.00 0.00 44.90 2.27
258 259 6.127366 TGGTTTTTGCTCATCTCTCAAAAAGT 60.127 34.615 11.00 0.00 44.90 2.66
259 260 6.758416 GGTTTTTGCTCATCTCTCAAAAAGTT 59.242 34.615 11.00 0.00 44.90 2.66
260 261 7.920682 GGTTTTTGCTCATCTCTCAAAAAGTTA 59.079 33.333 11.00 0.00 44.90 2.24
261 262 9.468532 GTTTTTGCTCATCTCTCAAAAAGTTAT 57.531 29.630 11.00 0.00 44.90 1.89
262 263 9.683069 TTTTTGCTCATCTCTCAAAAAGTTATC 57.317 29.630 7.69 0.00 41.72 1.75
263 264 7.984422 TTGCTCATCTCTCAAAAAGTTATCA 57.016 32.000 0.00 0.00 0.00 2.15
264 265 7.984422 TGCTCATCTCTCAAAAAGTTATCAA 57.016 32.000 0.00 0.00 0.00 2.57
265 266 8.394971 TGCTCATCTCTCAAAAAGTTATCAAA 57.605 30.769 0.00 0.00 0.00 2.69
266 267 9.017509 TGCTCATCTCTCAAAAAGTTATCAAAT 57.982 29.630 0.00 0.00 0.00 2.32
267 268 9.852091 GCTCATCTCTCAAAAAGTTATCAAATT 57.148 29.630 0.00 0.00 0.00 1.82
272 273 9.260002 TCTCTCAAAAAGTTATCAAATTTTGGC 57.740 29.630 9.18 0.00 41.04 4.52
273 274 8.954950 TCTCAAAAAGTTATCAAATTTTGGCA 57.045 26.923 9.18 0.00 41.04 4.92
274 275 9.388506 TCTCAAAAAGTTATCAAATTTTGGCAA 57.611 25.926 9.18 0.00 41.04 4.52
275 276 9.437045 CTCAAAAAGTTATCAAATTTTGGCAAC 57.563 29.630 0.00 12.14 41.04 4.17
276 277 9.171877 TCAAAAAGTTATCAAATTTTGGCAACT 57.828 25.926 16.76 16.76 41.04 3.16
277 278 9.786105 CAAAAAGTTATCAAATTTTGGCAACTT 57.214 25.926 22.57 22.57 41.95 2.66
280 281 9.786105 AAAGTTATCAAATTTTGGCAACTTTTG 57.214 25.926 27.28 20.17 43.86 2.44
281 282 8.729805 AGTTATCAAATTTTGGCAACTTTTGA 57.270 26.923 26.20 26.20 39.72 2.69
282 283 9.341078 AGTTATCAAATTTTGGCAACTTTTGAT 57.659 25.926 31.34 31.34 44.67 2.57
283 284 9.949174 GTTATCAAATTTTGGCAACTTTTGATT 57.051 25.926 32.56 23.43 41.69 2.57
286 287 8.684973 TCAAATTTTGGCAACTTTTGATTTTG 57.315 26.923 22.89 15.42 32.88 2.44
287 288 7.275123 TCAAATTTTGGCAACTTTTGATTTTGC 59.725 29.630 22.89 0.00 44.05 3.68
294 295 5.580661 GCAACTTTTGATTTTGCCAAATGT 58.419 33.333 0.00 0.00 40.94 2.71
295 296 6.035217 GCAACTTTTGATTTTGCCAAATGTT 58.965 32.000 0.00 5.81 44.92 2.71
311 312 6.833839 CCAAATGTTGGCTTGTCAAATATTG 58.166 36.000 0.00 0.00 45.17 1.90
312 313 6.128227 CCAAATGTTGGCTTGTCAAATATTGG 60.128 38.462 10.34 10.34 45.17 3.16
313 314 3.924144 TGTTGGCTTGTCAAATATTGGC 58.076 40.909 0.00 0.00 35.37 4.52
314 315 3.323115 TGTTGGCTTGTCAAATATTGGCA 59.677 39.130 0.00 0.00 44.76 4.92
326 327 9.553064 TGTCAAATATTGGCAATGTTAAACTTT 57.447 25.926 22.57 3.43 43.24 2.66
327 328 9.810231 GTCAAATATTGGCAATGTTAAACTTTG 57.190 29.630 22.57 14.81 36.62 2.77
328 329 8.997323 TCAAATATTGGCAATGTTAAACTTTGG 58.003 29.630 22.57 5.83 34.83 3.28
332 333 3.793776 GCAATGTTAAACTTTGGCAGC 57.206 42.857 0.00 0.00 34.83 5.25
333 334 2.155539 GCAATGTTAAACTTTGGCAGCG 59.844 45.455 0.00 0.00 34.83 5.18
334 335 3.637432 CAATGTTAAACTTTGGCAGCGA 58.363 40.909 0.00 0.00 31.82 4.93
335 336 4.047822 CAATGTTAAACTTTGGCAGCGAA 58.952 39.130 0.00 0.00 31.82 4.70
336 337 3.073144 TGTTAAACTTTGGCAGCGAAC 57.927 42.857 0.00 0.00 0.00 3.95
337 338 2.223618 TGTTAAACTTTGGCAGCGAACC 60.224 45.455 0.00 0.00 0.00 3.62
338 339 1.681538 TAAACTTTGGCAGCGAACCA 58.318 45.000 0.00 0.00 34.65 3.67
339 340 0.820871 AAACTTTGGCAGCGAACCAA 59.179 45.000 4.28 4.28 45.37 3.67
340 341 1.039856 AACTTTGGCAGCGAACCAAT 58.960 45.000 8.64 0.00 46.25 3.16
341 342 1.039856 ACTTTGGCAGCGAACCAATT 58.960 45.000 8.64 0.00 46.25 2.32
342 343 2.235016 ACTTTGGCAGCGAACCAATTA 58.765 42.857 8.64 0.00 46.25 1.40
343 344 2.228822 ACTTTGGCAGCGAACCAATTAG 59.771 45.455 8.64 7.12 46.25 1.73
344 345 0.525761 TTGGCAGCGAACCAATTAGC 59.474 50.000 4.28 0.00 42.23 3.09
345 346 1.312371 TGGCAGCGAACCAATTAGCC 61.312 55.000 0.00 0.00 37.16 3.93
346 347 1.032114 GGCAGCGAACCAATTAGCCT 61.032 55.000 0.00 0.00 37.16 4.58
347 348 0.378610 GCAGCGAACCAATTAGCCTC 59.621 55.000 0.00 0.00 37.16 4.70
374 375 2.932614 CACCGTGTGATCTGAATCCTTC 59.067 50.000 0.00 0.00 35.23 3.46
379 380 2.842496 TGTGATCTGAATCCTTCTGCCT 59.158 45.455 0.00 0.00 0.00 4.75
385 386 4.550669 TCTGAATCCTTCTGCCTATCTGA 58.449 43.478 0.00 0.00 0.00 3.27
416 417 0.253394 CCCCCTCCCTCTTTCCTTCT 60.253 60.000 0.00 0.00 0.00 2.85
426 427 0.603707 CTTTCCTTCTGCTGGCGACA 60.604 55.000 0.00 0.00 39.59 4.35
436 437 2.801421 TGGCGACAGAGATCGAGC 59.199 61.111 0.00 0.00 45.13 5.03
437 438 2.046285 TGGCGACAGAGATCGAGCA 61.046 57.895 2.38 0.00 45.13 4.26
438 439 1.299014 GGCGACAGAGATCGAGCAG 60.299 63.158 2.38 0.00 45.13 4.24
439 440 1.719725 GGCGACAGAGATCGAGCAGA 61.720 60.000 2.38 0.00 45.13 4.26
440 441 0.591236 GCGACAGAGATCGAGCAGAC 60.591 60.000 2.38 0.00 45.13 3.51
441 442 0.315788 CGACAGAGATCGAGCAGACG 60.316 60.000 2.38 0.80 45.13 4.18
442 443 1.010580 GACAGAGATCGAGCAGACGA 58.989 55.000 2.38 0.00 46.04 4.20
485 486 0.972983 CCGCCCTCCTCTTCTTCTCA 60.973 60.000 0.00 0.00 0.00 3.27
824 832 6.010219 CACCCCACCCATTAATTTATAGAGG 58.990 44.000 0.00 0.00 0.00 3.69
843 856 5.475719 AGAGGTTTTGATGCATTGTGAATG 58.524 37.500 0.00 0.00 41.85 2.67
946 959 6.638468 GGAAAATGTGAATCGAAGGCATAATC 59.362 38.462 0.00 0.00 0.00 1.75
951 964 7.099266 TGTGAATCGAAGGCATAATCATTTT 57.901 32.000 0.00 0.00 0.00 1.82
1023 1037 2.032808 GCAGTCTGGTTCAAAGTTCGTC 60.033 50.000 1.14 0.00 0.00 4.20
1055 1069 1.589113 CGGCTAGGAGGCTATCAGC 59.411 63.158 5.40 5.40 38.85 4.26
1092 1106 6.053005 CACAACTGTGGGTTCTAGTAAGAAA 58.947 40.000 1.70 0.00 41.44 2.52
1095 1109 5.855045 ACTGTGGGTTCTAGTAAGAAAGTG 58.145 41.667 0.00 0.00 43.30 3.16
1096 1110 4.638304 TGTGGGTTCTAGTAAGAAAGTGC 58.362 43.478 0.00 0.00 43.30 4.40
1218 1232 4.527509 TGCGATCCTTGGATCTAAGATC 57.472 45.455 19.55 16.86 0.00 2.75
1403 1417 7.568861 GCATCAGCTTTGTTTGAATGAGAAAAG 60.569 37.037 0.00 0.00 37.91 2.27
1587 1601 5.613577 GCGAGTGTTTGAAGAGATCTTTGAC 60.614 44.000 0.00 0.00 36.11 3.18
1691 1705 7.572523 TTGCCAGTGAAATGATAAGGAATAG 57.427 36.000 0.00 0.00 0.00 1.73
1872 1886 4.143242 CGATGTGGAGCTTATCAATTAGCG 60.143 45.833 0.00 0.00 42.18 4.26
1917 1931 0.953960 GAACCGTGGCTTCGTGGAAT 60.954 55.000 2.67 0.00 0.00 3.01
2139 2153 3.230134 TGTTTTGGCCACTGCTCTTATT 58.770 40.909 3.88 0.00 37.74 1.40
2209 2223 7.444183 TCTTTGATCAACTGACGGTTAAAGATT 59.556 33.333 7.89 0.00 35.56 2.40
2210 2224 7.504924 TTGATCAACTGACGGTTAAAGATTT 57.495 32.000 3.38 0.00 36.23 2.17
2286 2300 4.032960 AGCCACCACATTACTCAATGAA 57.967 40.909 4.46 0.00 43.67 2.57
2475 2489 2.314561 TTTGCAGAGAAATTGTCGCG 57.685 45.000 0.00 0.00 0.00 5.87
2543 2557 2.803203 CAGCCATGATGAAGGGGTG 58.197 57.895 0.00 0.00 42.93 4.61
2776 2790 5.186256 TGCTAAATGTGGAAGGTTGGATA 57.814 39.130 0.00 0.00 0.00 2.59
3126 3140 6.199154 AGCTATTGTCGTTGACTGATAAATCG 59.801 38.462 0.00 0.00 33.15 3.34
3413 3427 3.430471 TGCCCCTGCAATCTGGAT 58.570 55.556 0.00 0.00 46.66 3.41
3452 3476 2.111972 AGGTCTGTAGAGGAAGGTGGAA 59.888 50.000 0.00 0.00 0.00 3.53
3453 3477 2.904434 GGTCTGTAGAGGAAGGTGGAAA 59.096 50.000 0.00 0.00 0.00 3.13
3454 3478 3.326880 GGTCTGTAGAGGAAGGTGGAAAA 59.673 47.826 0.00 0.00 0.00 2.29
3455 3479 4.019231 GGTCTGTAGAGGAAGGTGGAAAAT 60.019 45.833 0.00 0.00 0.00 1.82
3456 3480 4.938226 GTCTGTAGAGGAAGGTGGAAAATG 59.062 45.833 0.00 0.00 0.00 2.32
3457 3481 4.019321 TCTGTAGAGGAAGGTGGAAAATGG 60.019 45.833 0.00 0.00 0.00 3.16
3458 3482 3.913799 TGTAGAGGAAGGTGGAAAATGGA 59.086 43.478 0.00 0.00 0.00 3.41
3459 3483 3.728385 AGAGGAAGGTGGAAAATGGAG 57.272 47.619 0.00 0.00 0.00 3.86
3460 3484 2.989571 AGAGGAAGGTGGAAAATGGAGT 59.010 45.455 0.00 0.00 0.00 3.85
3461 3485 3.399305 AGAGGAAGGTGGAAAATGGAGTT 59.601 43.478 0.00 0.00 0.00 3.01
3528 3565 3.131933 CCTCCCTATTCAGGCATATCTCG 59.868 52.174 0.00 0.00 41.08 4.04
3594 3631 2.327373 GGGGGATAGTGAGACCCTAAC 58.673 57.143 0.00 0.00 42.90 2.34
3604 3641 0.759346 AGACCCTAACCGATCCATGC 59.241 55.000 0.00 0.00 0.00 4.06
3624 3661 1.140407 GATACAGTCGACACCAGCGC 61.140 60.000 19.50 0.00 0.00 5.92
3675 3712 6.496218 TCATCAGTAGGACTATTGCAGATGAT 59.504 38.462 0.00 0.00 0.00 2.45
3676 3713 6.737720 TCAGTAGGACTATTGCAGATGATT 57.262 37.500 0.00 0.00 0.00 2.57
3680 3717 5.378230 AGGACTATTGCAGATGATTGGAA 57.622 39.130 0.00 0.00 32.84 3.53
3681 3718 5.950023 AGGACTATTGCAGATGATTGGAAT 58.050 37.500 0.00 0.00 41.25 3.01
3791 3829 6.072230 GGACGAAGAGGTTAGTACTTGTTAGT 60.072 42.308 0.00 0.00 38.44 2.24
3892 3930 6.505039 TGTAAATGTAGACGCGTCATATTG 57.495 37.500 37.85 0.00 0.00 1.90
3893 3931 5.460748 TGTAAATGTAGACGCGTCATATTGG 59.539 40.000 37.85 0.00 0.00 3.16
3894 3932 4.316205 AATGTAGACGCGTCATATTGGA 57.684 40.909 37.85 16.20 0.00 3.53
3895 3933 3.074504 TGTAGACGCGTCATATTGGAC 57.925 47.619 37.85 22.51 34.42 4.02
3896 3934 2.223641 TGTAGACGCGTCATATTGGACC 60.224 50.000 37.85 15.72 34.24 4.46
3897 3935 0.821517 AGACGCGTCATATTGGACCA 59.178 50.000 37.85 0.00 34.24 4.02
3898 3936 1.202417 AGACGCGTCATATTGGACCAG 60.202 52.381 37.85 0.00 34.24 4.00
3899 3937 0.821517 ACGCGTCATATTGGACCAGA 59.178 50.000 5.58 0.00 34.24 3.86
3900 3938 1.412710 ACGCGTCATATTGGACCAGAT 59.587 47.619 5.58 0.00 34.24 2.90
3927 3965 4.398988 ACTGCTGAACATCTGTTTTTGTCA 59.601 37.500 0.00 0.00 38.56 3.58
3948 3986 2.019984 GCTGCAGAATTAGAGTTGGGG 58.980 52.381 20.43 0.00 0.00 4.96
3949 3987 2.619074 GCTGCAGAATTAGAGTTGGGGT 60.619 50.000 20.43 0.00 0.00 4.95
3950 3988 3.690460 CTGCAGAATTAGAGTTGGGGTT 58.310 45.455 8.42 0.00 0.00 4.11
3967 4005 3.636231 TGGTTCCGCCAGACAGGG 61.636 66.667 0.00 0.00 43.61 4.45
3986 4024 2.125350 CCCTTGTCCGAGCAGAGC 60.125 66.667 0.00 0.00 0.00 4.09
4005 4043 2.791253 AGGCACCCTGGAGAAATCA 58.209 52.632 0.00 0.00 29.57 2.57
4038 4076 1.546476 GCAGAGAAGAGAGAACCCGAA 59.454 52.381 0.00 0.00 0.00 4.30
4053 4091 5.182001 AGAACCCGAAAGAAAATGTCATCAG 59.818 40.000 0.00 0.00 0.00 2.90
4098 4323 4.150897 TGGAATCAGATACGGGAAAAGG 57.849 45.455 0.00 0.00 0.00 3.11
4140 4365 5.009911 TGACAAAATGCATGCAGAAAGTAGT 59.990 36.000 26.69 16.45 0.00 2.73
4227 4461 1.338337 TGGTGCATTTTGGTACGTTGG 59.662 47.619 0.00 0.00 0.00 3.77
4250 4485 1.065410 TTTCAGGGGAAGCTGGGTGA 61.065 55.000 0.00 0.00 33.82 4.02
4345 4580 1.532868 GGATATGCGTCCATGCTGAAC 59.467 52.381 0.00 0.00 38.20 3.18
4358 4593 7.429340 CGTCCATGCTGAACATATTTTTAGAAC 59.571 37.037 0.00 0.00 36.64 3.01
4359 4594 8.462016 GTCCATGCTGAACATATTTTTAGAACT 58.538 33.333 0.00 0.00 36.64 3.01
4360 4595 9.023962 TCCATGCTGAACATATTTTTAGAACTT 57.976 29.630 0.00 0.00 36.64 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 9.851686 ACAGCTTTCTATCCAATAAATGATGTA 57.148 29.630 0.00 0.00 0.00 2.29
20 21 8.757982 ACAGCTTTCTATCCAATAAATGATGT 57.242 30.769 0.00 0.00 0.00 3.06
23 24 9.120538 GGTAACAGCTTTCTATCCAATAAATGA 57.879 33.333 0.00 0.00 0.00 2.57
24 25 8.902806 TGGTAACAGCTTTCTATCCAATAAATG 58.097 33.333 0.00 0.00 46.17 2.32
54 55 9.358406 TGGAGATGCAAATAGATGATGTAAATT 57.642 29.630 0.00 0.00 0.00 1.82
55 56 8.929260 TGGAGATGCAAATAGATGATGTAAAT 57.071 30.769 0.00 0.00 0.00 1.40
56 57 8.750515 TTGGAGATGCAAATAGATGATGTAAA 57.249 30.769 0.00 0.00 0.00 2.01
57 58 7.994911 ACTTGGAGATGCAAATAGATGATGTAA 59.005 33.333 0.00 0.00 0.00 2.41
58 59 7.443272 CACTTGGAGATGCAAATAGATGATGTA 59.557 37.037 0.00 0.00 0.00 2.29
59 60 6.262496 CACTTGGAGATGCAAATAGATGATGT 59.738 38.462 0.00 0.00 0.00 3.06
60 61 6.262496 ACACTTGGAGATGCAAATAGATGATG 59.738 38.462 0.00 0.00 0.00 3.07
61 62 6.363065 ACACTTGGAGATGCAAATAGATGAT 58.637 36.000 0.00 0.00 0.00 2.45
62 63 5.748402 ACACTTGGAGATGCAAATAGATGA 58.252 37.500 0.00 0.00 0.00 2.92
63 64 6.446781 AACACTTGGAGATGCAAATAGATG 57.553 37.500 0.00 0.00 0.00 2.90
64 65 6.660521 TCAAACACTTGGAGATGCAAATAGAT 59.339 34.615 0.00 0.00 33.01 1.98
65 66 6.003326 TCAAACACTTGGAGATGCAAATAGA 58.997 36.000 0.00 0.00 33.01 1.98
66 67 6.258230 TCAAACACTTGGAGATGCAAATAG 57.742 37.500 0.00 0.00 33.01 1.73
67 68 5.335897 GCTCAAACACTTGGAGATGCAAATA 60.336 40.000 0.00 0.00 33.01 1.40
68 69 4.560108 GCTCAAACACTTGGAGATGCAAAT 60.560 41.667 0.00 0.00 33.01 2.32
69 70 3.243501 GCTCAAACACTTGGAGATGCAAA 60.244 43.478 0.00 0.00 33.01 3.68
70 71 2.294233 GCTCAAACACTTGGAGATGCAA 59.706 45.455 0.00 0.00 33.01 4.08
71 72 1.881973 GCTCAAACACTTGGAGATGCA 59.118 47.619 0.00 0.00 33.01 3.96
72 73 1.881973 TGCTCAAACACTTGGAGATGC 59.118 47.619 0.00 0.00 33.01 3.91
73 74 3.316029 TGTTGCTCAAACACTTGGAGATG 59.684 43.478 0.00 0.00 43.96 2.90
74 75 3.554934 TGTTGCTCAAACACTTGGAGAT 58.445 40.909 0.00 0.00 43.96 2.75
75 76 2.997980 TGTTGCTCAAACACTTGGAGA 58.002 42.857 0.00 0.00 43.96 3.71
84 85 4.631131 AGGCCTAAAAATGTTGCTCAAAC 58.369 39.130 1.29 0.00 39.41 2.93
85 86 4.558496 CGAGGCCTAAAAATGTTGCTCAAA 60.558 41.667 4.42 0.00 0.00 2.69
86 87 3.057596 CGAGGCCTAAAAATGTTGCTCAA 60.058 43.478 4.42 0.00 0.00 3.02
87 88 2.487762 CGAGGCCTAAAAATGTTGCTCA 59.512 45.455 4.42 0.00 0.00 4.26
88 89 2.747446 TCGAGGCCTAAAAATGTTGCTC 59.253 45.455 4.42 0.00 0.00 4.26
89 90 2.790433 TCGAGGCCTAAAAATGTTGCT 58.210 42.857 4.42 0.00 0.00 3.91
90 91 3.128589 TCATCGAGGCCTAAAAATGTTGC 59.871 43.478 4.42 0.00 0.00 4.17
91 92 4.963276 TCATCGAGGCCTAAAAATGTTG 57.037 40.909 4.42 0.00 0.00 3.33
92 93 4.339247 CCATCATCGAGGCCTAAAAATGTT 59.661 41.667 4.42 0.00 0.00 2.71
93 94 3.885297 CCATCATCGAGGCCTAAAAATGT 59.115 43.478 4.42 0.00 0.00 2.71
94 95 4.136796 TCCATCATCGAGGCCTAAAAATG 58.863 43.478 4.42 7.53 0.00 2.32
95 96 4.437682 TCCATCATCGAGGCCTAAAAAT 57.562 40.909 4.42 0.00 0.00 1.82
96 97 3.924114 TCCATCATCGAGGCCTAAAAA 57.076 42.857 4.42 0.00 0.00 1.94
97 98 3.924114 TTCCATCATCGAGGCCTAAAA 57.076 42.857 4.42 0.00 0.00 1.52
98 99 3.924114 TTTCCATCATCGAGGCCTAAA 57.076 42.857 4.42 0.00 0.00 1.85
99 100 3.924114 TTTTCCATCATCGAGGCCTAA 57.076 42.857 4.42 0.00 0.00 2.69
100 101 3.199946 ACTTTTTCCATCATCGAGGCCTA 59.800 43.478 4.42 0.00 0.00 3.93
101 102 2.025887 ACTTTTTCCATCATCGAGGCCT 60.026 45.455 3.86 3.86 0.00 5.19
102 103 2.369394 ACTTTTTCCATCATCGAGGCC 58.631 47.619 0.00 0.00 0.00 5.19
103 104 4.156739 AGAAACTTTTTCCATCATCGAGGC 59.843 41.667 0.00 0.00 0.00 4.70
104 105 5.886960 AGAAACTTTTTCCATCATCGAGG 57.113 39.130 0.00 0.00 0.00 4.63
105 106 9.846248 AATTTAGAAACTTTTTCCATCATCGAG 57.154 29.630 0.00 0.00 0.00 4.04
106 107 9.840427 GAATTTAGAAACTTTTTCCATCATCGA 57.160 29.630 0.00 0.00 0.00 3.59
107 108 9.624697 TGAATTTAGAAACTTTTTCCATCATCG 57.375 29.630 0.00 0.00 0.00 3.84
110 111 9.709495 CCATGAATTTAGAAACTTTTTCCATCA 57.291 29.630 0.00 0.00 0.00 3.07
111 112 9.154847 CCCATGAATTTAGAAACTTTTTCCATC 57.845 33.333 0.00 0.00 0.00 3.51
112 113 8.879227 TCCCATGAATTTAGAAACTTTTTCCAT 58.121 29.630 0.00 0.00 0.00 3.41
113 114 8.256356 TCCCATGAATTTAGAAACTTTTTCCA 57.744 30.769 0.00 0.00 0.00 3.53
120 121 9.753674 TCTTTGTATCCCATGAATTTAGAAACT 57.246 29.630 0.00 0.00 0.00 2.66
121 122 9.788960 GTCTTTGTATCCCATGAATTTAGAAAC 57.211 33.333 0.00 0.00 0.00 2.78
122 123 9.527157 TGTCTTTGTATCCCATGAATTTAGAAA 57.473 29.630 0.00 0.00 0.00 2.52
123 124 9.699410 ATGTCTTTGTATCCCATGAATTTAGAA 57.301 29.630 0.00 0.00 0.00 2.10
127 128 9.347240 CTCTATGTCTTTGTATCCCATGAATTT 57.653 33.333 0.00 0.00 0.00 1.82
128 129 8.497745 ACTCTATGTCTTTGTATCCCATGAATT 58.502 33.333 0.00 0.00 0.00 2.17
129 130 8.038862 ACTCTATGTCTTTGTATCCCATGAAT 57.961 34.615 0.00 0.00 0.00 2.57
130 131 7.437713 ACTCTATGTCTTTGTATCCCATGAA 57.562 36.000 0.00 0.00 0.00 2.57
131 132 7.055667 GACTCTATGTCTTTGTATCCCATGA 57.944 40.000 0.00 0.00 42.21 3.07
145 146 7.254932 GGCATCAAACCAATTAGACTCTATGTC 60.255 40.741 0.00 0.00 45.67 3.06
146 147 6.543831 GGCATCAAACCAATTAGACTCTATGT 59.456 38.462 0.00 0.00 0.00 2.29
147 148 6.543465 TGGCATCAAACCAATTAGACTCTATG 59.457 38.462 0.00 0.00 33.12 2.23
148 149 6.662755 TGGCATCAAACCAATTAGACTCTAT 58.337 36.000 0.00 0.00 33.12 1.98
149 150 6.061022 TGGCATCAAACCAATTAGACTCTA 57.939 37.500 0.00 0.00 33.12 2.43
150 151 4.922206 TGGCATCAAACCAATTAGACTCT 58.078 39.130 0.00 0.00 33.12 3.24
151 152 5.643379 TTGGCATCAAACCAATTAGACTC 57.357 39.130 0.00 0.00 42.23 3.36
184 185 8.063630 GTCAAATTTTAGACTTGCCAACAATTG 58.936 33.333 3.24 3.24 34.61 2.32
185 186 7.042791 CGTCAAATTTTAGACTTGCCAACAATT 60.043 33.333 6.98 0.00 34.61 2.32
186 187 6.420604 CGTCAAATTTTAGACTTGCCAACAAT 59.579 34.615 6.98 0.00 34.61 2.71
187 188 5.746245 CGTCAAATTTTAGACTTGCCAACAA 59.254 36.000 6.98 0.00 32.68 2.83
188 189 5.277825 CGTCAAATTTTAGACTTGCCAACA 58.722 37.500 6.98 0.00 32.68 3.33
189 190 4.148174 GCGTCAAATTTTAGACTTGCCAAC 59.852 41.667 6.98 0.00 32.68 3.77
190 191 4.037446 AGCGTCAAATTTTAGACTTGCCAA 59.963 37.500 6.98 0.00 32.68 4.52
191 192 3.568007 AGCGTCAAATTTTAGACTTGCCA 59.432 39.130 6.98 0.00 32.68 4.92
192 193 4.159120 GAGCGTCAAATTTTAGACTTGCC 58.841 43.478 6.98 0.00 32.68 4.52
193 194 4.783242 TGAGCGTCAAATTTTAGACTTGC 58.217 39.130 6.98 4.54 32.68 4.01
194 195 7.148918 CCAATTGAGCGTCAAATTTTAGACTTG 60.149 37.037 7.12 4.19 40.12 3.16
195 196 6.863126 CCAATTGAGCGTCAAATTTTAGACTT 59.137 34.615 7.12 0.00 40.12 3.01
196 197 6.016276 ACCAATTGAGCGTCAAATTTTAGACT 60.016 34.615 7.12 0.00 40.12 3.24
197 198 6.149633 ACCAATTGAGCGTCAAATTTTAGAC 58.850 36.000 7.12 0.00 40.12 2.59
198 199 6.325919 ACCAATTGAGCGTCAAATTTTAGA 57.674 33.333 7.12 0.00 40.12 2.10
199 200 6.128849 CCAACCAATTGAGCGTCAAATTTTAG 60.129 38.462 7.12 0.00 40.12 1.85
200 201 5.694006 CCAACCAATTGAGCGTCAAATTTTA 59.306 36.000 7.12 0.00 40.12 1.52
201 202 4.511082 CCAACCAATTGAGCGTCAAATTTT 59.489 37.500 7.12 0.00 40.12 1.82
202 203 4.057432 CCAACCAATTGAGCGTCAAATTT 58.943 39.130 7.12 0.00 40.12 1.82
203 204 3.652274 CCAACCAATTGAGCGTCAAATT 58.348 40.909 7.12 0.00 40.12 1.82
204 205 2.610232 GCCAACCAATTGAGCGTCAAAT 60.610 45.455 7.12 0.00 40.12 2.32
205 206 1.269517 GCCAACCAATTGAGCGTCAAA 60.270 47.619 7.12 0.00 40.12 2.69
206 207 0.313672 GCCAACCAATTGAGCGTCAA 59.686 50.000 7.12 3.49 41.09 3.18
207 208 0.537143 AGCCAACCAATTGAGCGTCA 60.537 50.000 7.12 0.00 38.15 4.35
208 209 1.448985 TAGCCAACCAATTGAGCGTC 58.551 50.000 7.12 0.00 38.15 5.19
209 210 2.017049 GATAGCCAACCAATTGAGCGT 58.983 47.619 7.12 0.00 38.15 5.07
210 211 2.016318 TGATAGCCAACCAATTGAGCG 58.984 47.619 7.12 0.00 38.15 5.03
211 212 4.660789 ATTGATAGCCAACCAATTGAGC 57.339 40.909 7.12 4.38 38.15 4.26
215 216 5.760484 AACCAATTGATAGCCAACCAATT 57.240 34.783 7.12 0.00 40.06 2.32
216 217 5.760484 AAACCAATTGATAGCCAACCAAT 57.240 34.783 7.12 0.00 37.63 3.16
217 218 5.559148 AAAACCAATTGATAGCCAACCAA 57.441 34.783 7.12 0.00 37.63 3.67
218 219 5.303971 CAAAAACCAATTGATAGCCAACCA 58.696 37.500 7.12 0.00 37.63 3.67
219 220 4.154015 GCAAAAACCAATTGATAGCCAACC 59.846 41.667 7.12 0.00 37.63 3.77
220 221 4.996758 AGCAAAAACCAATTGATAGCCAAC 59.003 37.500 7.12 0.00 37.63 3.77
221 222 5.221601 TGAGCAAAAACCAATTGATAGCCAA 60.222 36.000 7.12 0.00 39.41 4.52
222 223 4.282957 TGAGCAAAAACCAATTGATAGCCA 59.717 37.500 7.12 0.98 0.00 4.75
223 224 4.819769 TGAGCAAAAACCAATTGATAGCC 58.180 39.130 7.12 0.00 0.00 3.93
224 225 6.335777 AGATGAGCAAAAACCAATTGATAGC 58.664 36.000 7.12 2.35 0.00 2.97
225 226 7.769220 AGAGATGAGCAAAAACCAATTGATAG 58.231 34.615 7.12 0.00 0.00 2.08
226 227 7.394077 TGAGAGATGAGCAAAAACCAATTGATA 59.606 33.333 7.12 0.00 0.00 2.15
227 228 6.209986 TGAGAGATGAGCAAAAACCAATTGAT 59.790 34.615 7.12 0.00 0.00 2.57
228 229 5.535783 TGAGAGATGAGCAAAAACCAATTGA 59.464 36.000 7.12 0.00 0.00 2.57
229 230 5.775686 TGAGAGATGAGCAAAAACCAATTG 58.224 37.500 0.00 0.00 0.00 2.32
230 231 6.409524 TTGAGAGATGAGCAAAAACCAATT 57.590 33.333 0.00 0.00 0.00 2.32
231 232 6.409524 TTTGAGAGATGAGCAAAAACCAAT 57.590 33.333 0.00 0.00 0.00 3.16
232 233 5.850557 TTTGAGAGATGAGCAAAAACCAA 57.149 34.783 0.00 0.00 0.00 3.67
233 234 5.850557 TTTTGAGAGATGAGCAAAAACCA 57.149 34.783 0.00 0.00 38.22 3.67
234 235 6.276091 ACTTTTTGAGAGATGAGCAAAAACC 58.724 36.000 0.00 0.00 42.89 3.27
235 236 7.761651 AACTTTTTGAGAGATGAGCAAAAAC 57.238 32.000 0.00 0.00 42.89 2.43
236 237 9.683069 GATAACTTTTTGAGAGATGAGCAAAAA 57.317 29.630 0.00 0.00 44.47 1.94
237 238 8.849168 TGATAACTTTTTGAGAGATGAGCAAAA 58.151 29.630 0.00 0.00 39.08 2.44
238 239 8.394971 TGATAACTTTTTGAGAGATGAGCAAA 57.605 30.769 0.00 0.00 0.00 3.68
239 240 7.984422 TGATAACTTTTTGAGAGATGAGCAA 57.016 32.000 0.00 0.00 0.00 3.91
240 241 7.984422 TTGATAACTTTTTGAGAGATGAGCA 57.016 32.000 0.00 0.00 0.00 4.26
241 242 9.852091 AATTTGATAACTTTTTGAGAGATGAGC 57.148 29.630 0.00 0.00 0.00 4.26
246 247 9.260002 GCCAAAATTTGATAACTTTTTGAGAGA 57.740 29.630 7.37 0.00 40.01 3.10
247 248 9.044150 TGCCAAAATTTGATAACTTTTTGAGAG 57.956 29.630 7.37 0.00 40.01 3.20
248 249 8.954950 TGCCAAAATTTGATAACTTTTTGAGA 57.045 26.923 7.37 0.00 40.01 3.27
249 250 9.437045 GTTGCCAAAATTTGATAACTTTTTGAG 57.563 29.630 7.37 1.64 40.01 3.02
250 251 9.171877 AGTTGCCAAAATTTGATAACTTTTTGA 57.828 25.926 16.22 0.00 40.01 2.69
251 252 9.786105 AAGTTGCCAAAATTTGATAACTTTTTG 57.214 25.926 22.36 8.89 40.40 2.44
254 255 9.786105 CAAAAGTTGCCAAAATTTGATAACTTT 57.214 25.926 27.30 27.30 46.26 2.66
255 256 9.171877 TCAAAAGTTGCCAAAATTTGATAACTT 57.828 25.926 22.36 22.36 42.64 2.66
256 257 8.729805 TCAAAAGTTGCCAAAATTTGATAACT 57.270 26.923 16.22 16.22 37.85 2.24
257 258 9.949174 AATCAAAAGTTGCCAAAATTTGATAAC 57.051 25.926 22.01 11.15 34.05 1.89
260 261 9.303537 CAAAATCAAAAGTTGCCAAAATTTGAT 57.696 25.926 18.62 18.62 34.05 2.57
261 262 7.275123 GCAAAATCAAAAGTTGCCAAAATTTGA 59.725 29.630 16.51 16.51 41.41 2.69
262 263 7.392556 GCAAAATCAAAAGTTGCCAAAATTTG 58.607 30.769 8.96 8.96 41.41 2.32
263 264 7.522901 GCAAAATCAAAAGTTGCCAAAATTT 57.477 28.000 0.00 0.00 41.41 1.82
271 272 5.580661 ACATTTGGCAAAATCAAAAGTTGC 58.419 33.333 17.70 0.00 45.48 4.17
272 273 7.439204 CAACATTTGGCAAAATCAAAAGTTG 57.561 32.000 17.70 17.09 46.81 3.16
273 274 6.562518 CCAACATTTGGCAAAATCAAAAGTT 58.437 32.000 17.70 9.90 45.17 2.66
274 275 6.134040 CCAACATTTGGCAAAATCAAAAGT 57.866 33.333 17.70 4.62 45.17 2.66
288 289 6.621164 GCCAATATTTGACAAGCCAACATTTG 60.621 38.462 0.00 0.00 0.00 2.32
289 290 5.412286 GCCAATATTTGACAAGCCAACATTT 59.588 36.000 0.00 0.00 0.00 2.32
290 291 4.937015 GCCAATATTTGACAAGCCAACATT 59.063 37.500 0.00 0.00 0.00 2.71
291 292 4.020396 TGCCAATATTTGACAAGCCAACAT 60.020 37.500 0.00 0.00 0.00 2.71
292 293 3.323115 TGCCAATATTTGACAAGCCAACA 59.677 39.130 0.00 0.00 0.00 3.33
293 294 3.924144 TGCCAATATTTGACAAGCCAAC 58.076 40.909 0.00 0.00 0.00 3.77
294 295 4.613925 TTGCCAATATTTGACAAGCCAA 57.386 36.364 0.00 0.00 29.50 4.52
295 296 4.020396 ACATTGCCAATATTTGACAAGCCA 60.020 37.500 0.00 0.00 36.48 4.75
296 297 4.506758 ACATTGCCAATATTTGACAAGCC 58.493 39.130 0.00 0.00 36.48 4.35
297 298 7.593875 TTAACATTGCCAATATTTGACAAGC 57.406 32.000 0.00 0.00 36.48 4.01
298 299 9.206870 AGTTTAACATTGCCAATATTTGACAAG 57.793 29.630 0.00 0.00 36.48 3.16
299 300 9.553064 AAGTTTAACATTGCCAATATTTGACAA 57.447 25.926 0.00 0.00 37.43 3.18
300 301 9.553064 AAAGTTTAACATTGCCAATATTTGACA 57.447 25.926 0.00 0.00 0.00 3.58
301 302 9.810231 CAAAGTTTAACATTGCCAATATTTGAC 57.190 29.630 0.13 0.00 0.00 3.18
302 303 8.997323 CCAAAGTTTAACATTGCCAATATTTGA 58.003 29.630 7.45 0.00 0.00 2.69
303 304 7.750014 GCCAAAGTTTAACATTGCCAATATTTG 59.250 33.333 7.45 1.08 0.00 2.32
304 305 7.446625 TGCCAAAGTTTAACATTGCCAATATTT 59.553 29.630 7.45 0.00 0.00 1.40
305 306 6.939163 TGCCAAAGTTTAACATTGCCAATATT 59.061 30.769 7.45 0.00 0.00 1.28
306 307 6.471146 TGCCAAAGTTTAACATTGCCAATAT 58.529 32.000 7.45 0.00 0.00 1.28
307 308 5.858381 TGCCAAAGTTTAACATTGCCAATA 58.142 33.333 7.45 0.00 0.00 1.90
308 309 4.712476 TGCCAAAGTTTAACATTGCCAAT 58.288 34.783 7.45 0.00 0.00 3.16
309 310 4.125703 CTGCCAAAGTTTAACATTGCCAA 58.874 39.130 7.45 0.00 0.00 4.52
310 311 3.726607 CTGCCAAAGTTTAACATTGCCA 58.273 40.909 7.45 2.48 0.00 4.92
311 312 2.480037 GCTGCCAAAGTTTAACATTGCC 59.520 45.455 7.45 0.00 0.00 4.52
312 313 2.155539 CGCTGCCAAAGTTTAACATTGC 59.844 45.455 7.45 4.59 0.00 3.56
313 314 3.637432 TCGCTGCCAAAGTTTAACATTG 58.363 40.909 6.13 6.13 0.00 2.82
314 315 4.048504 GTTCGCTGCCAAAGTTTAACATT 58.951 39.130 0.00 0.00 0.00 2.71
315 316 3.552068 GGTTCGCTGCCAAAGTTTAACAT 60.552 43.478 0.00 0.00 0.00 2.71
316 317 2.223618 GGTTCGCTGCCAAAGTTTAACA 60.224 45.455 0.00 0.00 0.00 2.41
317 318 2.223618 TGGTTCGCTGCCAAAGTTTAAC 60.224 45.455 0.00 0.00 32.29 2.01
318 319 2.025155 TGGTTCGCTGCCAAAGTTTAA 58.975 42.857 0.00 0.00 32.29 1.52
319 320 1.681538 TGGTTCGCTGCCAAAGTTTA 58.318 45.000 0.00 0.00 32.29 2.01
320 321 0.820871 TTGGTTCGCTGCCAAAGTTT 59.179 45.000 0.00 0.00 42.39 2.66
321 322 2.499214 TTGGTTCGCTGCCAAAGTT 58.501 47.368 0.00 0.00 42.39 2.66
322 323 4.251246 TTGGTTCGCTGCCAAAGT 57.749 50.000 0.00 0.00 42.39 2.66
326 327 1.312371 GGCTAATTGGTTCGCTGCCA 61.312 55.000 0.00 0.00 38.79 4.92
327 328 1.032114 AGGCTAATTGGTTCGCTGCC 61.032 55.000 0.00 0.00 39.19 4.85
328 329 0.378610 GAGGCTAATTGGTTCGCTGC 59.621 55.000 0.00 0.00 0.00 5.25
329 330 1.737838 TGAGGCTAATTGGTTCGCTG 58.262 50.000 0.00 0.00 0.00 5.18
330 331 2.717639 ATGAGGCTAATTGGTTCGCT 57.282 45.000 0.00 0.00 0.00 4.93
331 332 3.365364 GCATATGAGGCTAATTGGTTCGC 60.365 47.826 6.97 0.00 0.00 4.70
332 333 3.814842 TGCATATGAGGCTAATTGGTTCG 59.185 43.478 6.97 0.00 0.00 3.95
333 334 4.022849 GGTGCATATGAGGCTAATTGGTTC 60.023 45.833 6.97 0.00 0.00 3.62
334 335 3.891366 GGTGCATATGAGGCTAATTGGTT 59.109 43.478 6.97 0.00 0.00 3.67
335 336 3.490348 GGTGCATATGAGGCTAATTGGT 58.510 45.455 6.97 0.00 0.00 3.67
336 337 2.485426 CGGTGCATATGAGGCTAATTGG 59.515 50.000 6.97 0.00 0.00 3.16
337 338 3.058708 CACGGTGCATATGAGGCTAATTG 60.059 47.826 6.97 0.00 0.00 2.32
338 339 3.141398 CACGGTGCATATGAGGCTAATT 58.859 45.455 6.97 0.00 0.00 1.40
339 340 2.104792 ACACGGTGCATATGAGGCTAAT 59.895 45.455 6.97 0.00 0.00 1.73
340 341 1.484653 ACACGGTGCATATGAGGCTAA 59.515 47.619 6.97 0.00 0.00 3.09
341 342 1.119684 ACACGGTGCATATGAGGCTA 58.880 50.000 6.97 0.00 0.00 3.93
342 343 0.462581 CACACGGTGCATATGAGGCT 60.463 55.000 6.97 0.00 0.00 4.58
343 344 0.461870 TCACACGGTGCATATGAGGC 60.462 55.000 6.97 0.00 32.98 4.70
344 345 2.138320 GATCACACGGTGCATATGAGG 58.862 52.381 6.97 0.00 32.98 3.86
345 346 2.798847 CAGATCACACGGTGCATATGAG 59.201 50.000 6.97 0.00 32.98 2.90
346 347 2.430332 TCAGATCACACGGTGCATATGA 59.570 45.455 6.97 10.48 32.98 2.15
347 348 2.825205 TCAGATCACACGGTGCATATG 58.175 47.619 8.30 8.32 32.98 1.78
374 375 0.029567 GTCGACGGTCAGATAGGCAG 59.970 60.000 9.10 0.00 0.00 4.85
385 386 4.296729 AGGGGGACTGTCGACGGT 62.297 66.667 29.56 29.56 38.36 4.83
416 417 1.997928 CTCGATCTCTGTCGCCAGCA 61.998 60.000 0.00 0.00 41.22 4.41
426 427 0.393132 TGGTCGTCTGCTCGATCTCT 60.393 55.000 10.02 0.00 40.95 3.10
427 428 0.248296 GTGGTCGTCTGCTCGATCTC 60.248 60.000 10.02 4.50 40.95 2.75
428 429 1.803943 GTGGTCGTCTGCTCGATCT 59.196 57.895 10.02 0.00 40.95 2.75
429 430 1.583967 CGTGGTCGTCTGCTCGATC 60.584 63.158 0.00 3.38 41.78 3.69
430 431 2.485582 CGTGGTCGTCTGCTCGAT 59.514 61.111 0.00 0.00 41.78 3.59
431 432 4.400109 GCGTGGTCGTCTGCTCGA 62.400 66.667 0.00 0.00 39.49 4.04
462 463 3.471806 GAAGAGGAGGGCGGGGAC 61.472 72.222 0.00 0.00 0.00 4.46
464 465 2.689034 AAGAAGAGGAGGGCGGGG 60.689 66.667 0.00 0.00 0.00 5.73
485 486 4.335647 CCACTCCAACTGCCGGCT 62.336 66.667 29.70 4.80 0.00 5.52
575 582 2.815647 CAACCGCCGAGAAGCCTC 60.816 66.667 0.00 0.00 36.08 4.70
576 583 4.394712 CCAACCGCCGAGAAGCCT 62.395 66.667 0.00 0.00 0.00 4.58
645 652 4.421515 CAGGCAGTGCTCTGGGGG 62.422 72.222 16.11 0.00 41.57 5.40
649 656 2.046507 GGTCCAGGCAGTGCTCTG 60.047 66.667 20.48 20.48 43.87 3.35
824 832 9.881529 AATAAAACATTCACAATGCATCAAAAC 57.118 25.926 0.00 0.00 42.69 2.43
843 856 3.551485 CGCCATTGCTGCCTAAATAAAAC 59.449 43.478 0.00 0.00 34.43 2.43
946 959 8.579682 AAAGGAAACAATCGAGAAAGAAAATG 57.420 30.769 0.00 0.00 0.00 2.32
951 964 8.215926 TGTAAAAAGGAAACAATCGAGAAAGA 57.784 30.769 0.00 0.00 0.00 2.52
1023 1037 3.258372 TCCTAGCCGGCACTATAATCTTG 59.742 47.826 31.54 5.03 0.00 3.02
1055 1069 3.373130 CACAGTTGTGCCACTGATAGATG 59.627 47.826 13.23 0.00 46.29 2.90
1092 1106 2.896801 CTTTTCAGCACCGCGCACT 61.897 57.895 8.75 0.00 46.13 4.40
1218 1232 3.598019 AAATGTGCATACAAGCCAAGG 57.402 42.857 0.00 0.00 40.84 3.61
1251 1265 4.214310 TCTGGAAAACAAGCCTTGAATCA 58.786 39.130 12.25 1.66 0.00 2.57
1299 1313 2.886913 TCAACCATGGCAGAATTCCAA 58.113 42.857 13.04 0.00 32.95 3.53
1425 1439 2.555325 CAAATTCCTGAGCTGAGTGCAA 59.445 45.455 0.00 0.00 45.94 4.08
1587 1601 7.144722 TGAAGTGTAAGCAACAATATCCTTG 57.855 36.000 0.00 0.00 40.63 3.61
1691 1705 2.032290 GTCACACGGTTTACTTCCAAGC 60.032 50.000 0.00 0.00 0.00 4.01
1758 1772 2.736400 GCAGTGCATTGATTTACCCAGC 60.736 50.000 14.15 0.00 0.00 4.85
1830 1844 4.186856 TCGAGCATACATGTCAACAAGA 57.813 40.909 0.00 0.00 0.00 3.02
1917 1931 2.104792 AGTAAGACCAGAAAGCACAGCA 59.895 45.455 0.00 0.00 0.00 4.41
2139 2153 1.419381 TGCACTTGGAGTACACCTCA 58.581 50.000 10.86 0.00 42.40 3.86
2286 2300 7.172868 TGGTGCAATACATTCTTTCATCATT 57.827 32.000 0.00 0.00 0.00 2.57
2475 2489 8.514594 TCCAATGAGTCAAATACAATCTTTGTC 58.485 33.333 0.00 0.00 44.12 3.18
2543 2557 0.525761 TGCACGCCCAAAAGATAAGC 59.474 50.000 0.00 0.00 0.00 3.09
2776 2790 5.619220 ACTGAAGAAAAGAGCTTCTGACAT 58.381 37.500 14.36 0.00 41.20 3.06
3096 3110 6.647212 TCAGTCAACGACAATAGCTTTATG 57.353 37.500 0.00 0.00 34.60 1.90
3412 3426 0.888619 TCGACTCGACTTCCAGCAAT 59.111 50.000 0.00 0.00 0.00 3.56
3413 3427 0.241213 CTCGACTCGACTTCCAGCAA 59.759 55.000 0.00 0.00 0.00 3.91
3422 3436 1.928503 CTCTACAGACCTCGACTCGAC 59.071 57.143 0.00 0.00 0.00 4.20
3452 3476 3.512724 CAGGATCCAGCAAAACTCCATTT 59.487 43.478 15.82 0.00 0.00 2.32
3453 3477 3.094572 CAGGATCCAGCAAAACTCCATT 58.905 45.455 15.82 0.00 0.00 3.16
3454 3478 2.042162 ACAGGATCCAGCAAAACTCCAT 59.958 45.455 15.82 0.00 0.00 3.41
3455 3479 1.425066 ACAGGATCCAGCAAAACTCCA 59.575 47.619 15.82 0.00 0.00 3.86
3456 3480 2.206576 ACAGGATCCAGCAAAACTCC 57.793 50.000 15.82 0.00 0.00 3.85
3457 3481 3.057946 GTCAACAGGATCCAGCAAAACTC 60.058 47.826 15.82 0.00 0.00 3.01
3458 3482 2.887152 GTCAACAGGATCCAGCAAAACT 59.113 45.455 15.82 0.00 0.00 2.66
3459 3483 2.622942 TGTCAACAGGATCCAGCAAAAC 59.377 45.455 15.82 5.44 0.00 2.43
3460 3484 2.886523 CTGTCAACAGGATCCAGCAAAA 59.113 45.455 15.82 0.00 40.20 2.44
3461 3485 2.507484 CTGTCAACAGGATCCAGCAAA 58.493 47.619 15.82 0.00 40.20 3.68
3528 3565 3.118261 TGGTTGCATCTCCCTGAGAATAC 60.118 47.826 0.00 0.00 42.27 1.89
3578 3615 3.506844 GGATCGGTTAGGGTCTCACTATC 59.493 52.174 0.00 0.00 0.00 2.08
3591 3628 2.626266 ACTGTATCGCATGGATCGGTTA 59.374 45.455 0.00 0.00 36.55 2.85
3594 3631 1.702886 GACTGTATCGCATGGATCGG 58.297 55.000 0.00 0.00 36.55 4.18
3635 3672 2.866085 GATGAAGGCTCTGCTGCGGT 62.866 60.000 8.55 0.00 0.00 5.68
3675 3712 1.368641 CTGTTCGCGGATCATTCCAA 58.631 50.000 6.13 0.00 42.74 3.53
3676 3713 1.089481 GCTGTTCGCGGATCATTCCA 61.089 55.000 6.13 0.00 42.74 3.53
3680 3717 2.586079 CGGCTGTTCGCGGATCAT 60.586 61.111 6.13 0.00 41.07 2.45
3681 3718 4.812476 CCGGCTGTTCGCGGATCA 62.812 66.667 6.13 2.26 41.07 2.92
3744 3781 2.597455 ACAGGGAATTTTGACACTGGG 58.403 47.619 0.00 0.00 41.25 4.45
3791 3829 2.100584 GTGCAGGGAATTTGTTCACACA 59.899 45.455 0.00 0.00 0.00 3.72
3837 3875 9.790344 AATGTAACTAGATACAGATAGTACCGT 57.210 33.333 16.73 0.00 39.04 4.83
3892 3930 2.479566 TCAGCAGTGAAATCTGGTCC 57.520 50.000 0.00 0.00 43.02 4.46
3893 3931 3.141398 TGTTCAGCAGTGAAATCTGGTC 58.859 45.455 0.00 0.00 44.44 4.02
3894 3932 3.213206 TGTTCAGCAGTGAAATCTGGT 57.787 42.857 0.00 0.00 44.44 4.00
3895 3933 4.008330 AGATGTTCAGCAGTGAAATCTGG 58.992 43.478 0.00 0.00 44.44 3.86
3896 3934 4.971008 CAGATGTTCAGCAGTGAAATCTG 58.029 43.478 16.79 16.79 44.44 2.90
3897 3935 4.649692 ACAGATGTTCAGCAGTGAAATCT 58.350 39.130 0.00 0.00 44.44 2.40
3898 3936 5.368256 AACAGATGTTCAGCAGTGAAATC 57.632 39.130 0.00 0.00 44.44 2.17
3899 3937 5.779529 AAACAGATGTTCAGCAGTGAAAT 57.220 34.783 0.00 0.00 44.44 2.17
3900 3938 5.581126 AAAACAGATGTTCAGCAGTGAAA 57.419 34.783 0.00 0.00 44.44 2.69
3927 3965 2.356535 CCCCAACTCTAATTCTGCAGCT 60.357 50.000 9.47 0.00 0.00 4.24
3967 4005 3.672295 CTCTGCTCGGACAAGGGGC 62.672 68.421 0.00 0.00 0.00 5.80
3971 4009 1.447489 CCTGCTCTGCTCGGACAAG 60.447 63.158 0.00 0.00 0.00 3.16
4005 4043 0.909610 TCTCTGCGAATCCCCCTGTT 60.910 55.000 0.00 0.00 0.00 3.16
4038 4076 4.660168 AGCAGGTCTGATGACATTTTCTT 58.340 39.130 1.65 0.00 44.61 2.52
4053 4091 2.797177 AATTCTCCCAAGAGCAGGTC 57.203 50.000 0.00 0.00 40.22 3.85
4098 4323 3.257469 TCATCTGTGACATTCAGCCTC 57.743 47.619 0.00 0.00 33.48 4.70
4140 4365 0.179032 ATCCTCACCGCAAACACACA 60.179 50.000 0.00 0.00 0.00 3.72
4246 4481 1.222115 GAGCGTGTGTTCTGGTCACC 61.222 60.000 0.00 0.00 35.25 4.02
4250 4485 1.230635 GCATGAGCGTGTGTTCTGGT 61.231 55.000 0.00 0.00 0.00 4.00


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.