Multiple sequence alignment - TraesCS7B01G289200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G289200 chr7B 100.000 3719 0 0 1 3719 524889544 524885826 0.000000e+00 6868.0
1 TraesCS7B01G289200 chr7D 91.699 2301 99 36 508 2759 496724613 496722356 0.000000e+00 3107.0
2 TraesCS7B01G289200 chr7D 87.527 938 98 10 2787 3716 34031506 34032432 0.000000e+00 1066.0
3 TraesCS7B01G289200 chr7D 85.304 939 122 11 2787 3717 523804307 523805237 0.000000e+00 955.0
4 TraesCS7B01G289200 chr7D 85.211 142 19 2 1 142 258229632 258229493 1.080000e-30 145.0
5 TraesCS7B01G289200 chr7D 82.051 156 16 8 1 145 512128963 512128809 5.040000e-24 122.0
6 TraesCS7B01G289200 chr7D 82.963 135 22 1 1 135 453390496 453390629 1.810000e-23 121.0
7 TraesCS7B01G289200 chr7A 90.591 2232 104 39 574 2741 562003811 562001622 0.000000e+00 2861.0
8 TraesCS7B01G289200 chr7A 88.025 476 49 6 2787 3256 734175183 734175656 1.170000e-154 556.0
9 TraesCS7B01G289200 chr7A 82.908 509 60 14 317 805 562005850 562005349 2.050000e-117 433.0
10 TraesCS7B01G289200 chr5B 87.540 939 102 6 2787 3719 669500009 669500938 0.000000e+00 1072.0
11 TraesCS7B01G289200 chr5B 85.684 943 110 14 2787 3719 237128458 237127531 0.000000e+00 970.0
12 TraesCS7B01G289200 chr6B 86.553 937 108 9 2787 3717 688182497 688183421 0.000000e+00 1016.0
13 TraesCS7B01G289200 chr1A 86.368 939 112 7 2787 3719 221699968 221700896 0.000000e+00 1011.0
14 TraesCS7B01G289200 chr1A 86.397 941 109 12 2787 3719 556720095 556721024 0.000000e+00 1011.0
15 TraesCS7B01G289200 chr1A 86.199 913 106 7 2813 3719 495336148 495337046 0.000000e+00 970.0
16 TraesCS7B01G289200 chr6D 86.383 940 100 11 2787 3719 122736858 122735940 0.000000e+00 1002.0
17 TraesCS7B01G289200 chr6D 88.136 118 13 1 1 118 391699429 391699545 5.010000e-29 139.0
18 TraesCS7B01G289200 chr6D 85.227 88 12 1 1 88 391567767 391567853 5.120000e-14 89.8
19 TraesCS7B01G289200 chr6D 89.394 66 6 1 78 142 78965883 78965818 8.560000e-12 82.4
20 TraesCS7B01G289200 chr6D 76.774 155 24 8 1 144 266748893 266748740 3.980000e-10 76.8
21 TraesCS7B01G289200 chr6D 85.075 67 9 1 1 67 402569274 402569209 2.400000e-07 67.6
22 TraesCS7B01G289200 chr6D 92.857 42 3 0 1 42 104144328 104144287 1.120000e-05 62.1
23 TraesCS7B01G289200 chr2D 85.957 940 114 8 2787 3719 328330185 328331113 0.000000e+00 989.0
24 TraesCS7B01G289200 chr2D 90.141 142 13 1 1 142 446967498 446967358 2.280000e-42 183.0
25 TraesCS7B01G289200 chr2D 83.851 161 24 2 1 161 376945033 376944875 6.430000e-33 152.0
26 TraesCS7B01G289200 chr2D 84.138 145 21 2 1 144 569841966 569842109 5.010000e-29 139.0
27 TraesCS7B01G289200 chr5D 87.636 736 78 6 2987 3719 4297985 4298710 0.000000e+00 843.0
28 TraesCS7B01G289200 chr5D 86.607 672 75 9 3052 3719 544203743 544204403 0.000000e+00 728.0
29 TraesCS7B01G289200 chr5D 83.439 157 14 8 1 146 58518175 58518330 6.480000e-28 135.0
30 TraesCS7B01G289200 chr3B 88.109 698 71 5 3025 3719 127302646 127303334 0.000000e+00 819.0
31 TraesCS7B01G289200 chrUn 88.211 475 49 5 2787 3256 406057748 406058220 9.020000e-156 560.0
32 TraesCS7B01G289200 chrUn 87.815 476 50 6 2787 3256 259658456 259658929 5.430000e-153 551.0
33 TraesCS7B01G289200 chrUn 87.815 476 50 6 2787 3256 404999969 405000442 5.430000e-153 551.0
34 TraesCS7B01G289200 chrUn 80.769 156 16 7 1 144 283626002 283626155 3.930000e-20 110.0
35 TraesCS7B01G289200 chr5A 88.194 144 15 2 1 144 665587616 665587757 1.780000e-38 171.0
36 TraesCS7B01G289200 chr1B 84.828 145 21 1 1 145 677277852 677277709 1.080000e-30 145.0
37 TraesCS7B01G289200 chr2A 84.722 144 21 1 1 144 643225695 643225837 3.870000e-30 143.0
38 TraesCS7B01G289200 chr2A 83.333 144 23 1 1 144 654347000 654347142 8.380000e-27 132.0
39 TraesCS7B01G289200 chr1D 84.314 153 12 7 1 142 63017229 63017380 5.010000e-29 139.0
40 TraesCS7B01G289200 chr1D 83.803 142 22 1 1 142 376771972 376771832 2.330000e-27 134.0
41 TraesCS7B01G289200 chr1D 78.710 155 21 8 1 144 21039592 21039745 3.950000e-15 93.5
42 TraesCS7B01G289200 chr1D 85.227 88 12 1 1 88 338008515 338008601 5.120000e-14 89.8
43 TraesCS7B01G289200 chr1D 83.146 89 12 3 1 88 474436375 474436461 1.110000e-10 78.7
44 TraesCS7B01G289200 chr3D 87.387 111 13 1 2 112 555903616 555903507 3.900000e-25 126.0
45 TraesCS7B01G289200 chr4D 80.645 155 18 5 1 144 506946558 506946405 3.930000e-20 110.0
46 TraesCS7B01G289200 chr4D 76.712 146 29 5 1 144 28472264 28472122 3.980000e-10 76.8
47 TraesCS7B01G289200 chr4D 83.544 79 12 1 9 87 374783911 374783834 5.150000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G289200 chr7B 524885826 524889544 3718 True 6868 6868 100.0000 1 3719 1 chr7B.!!$R1 3718
1 TraesCS7B01G289200 chr7D 496722356 496724613 2257 True 3107 3107 91.6990 508 2759 1 chr7D.!!$R2 2251
2 TraesCS7B01G289200 chr7D 34031506 34032432 926 False 1066 1066 87.5270 2787 3716 1 chr7D.!!$F1 929
3 TraesCS7B01G289200 chr7D 523804307 523805237 930 False 955 955 85.3040 2787 3717 1 chr7D.!!$F3 930
4 TraesCS7B01G289200 chr7A 562001622 562005850 4228 True 1647 2861 86.7495 317 2741 2 chr7A.!!$R1 2424
5 TraesCS7B01G289200 chr5B 669500009 669500938 929 False 1072 1072 87.5400 2787 3719 1 chr5B.!!$F1 932
6 TraesCS7B01G289200 chr5B 237127531 237128458 927 True 970 970 85.6840 2787 3719 1 chr5B.!!$R1 932
7 TraesCS7B01G289200 chr6B 688182497 688183421 924 False 1016 1016 86.5530 2787 3717 1 chr6B.!!$F1 930
8 TraesCS7B01G289200 chr1A 221699968 221700896 928 False 1011 1011 86.3680 2787 3719 1 chr1A.!!$F1 932
9 TraesCS7B01G289200 chr1A 556720095 556721024 929 False 1011 1011 86.3970 2787 3719 1 chr1A.!!$F3 932
10 TraesCS7B01G289200 chr1A 495336148 495337046 898 False 970 970 86.1990 2813 3719 1 chr1A.!!$F2 906
11 TraesCS7B01G289200 chr6D 122735940 122736858 918 True 1002 1002 86.3830 2787 3719 1 chr6D.!!$R3 932
12 TraesCS7B01G289200 chr2D 328330185 328331113 928 False 989 989 85.9570 2787 3719 1 chr2D.!!$F1 932
13 TraesCS7B01G289200 chr5D 4297985 4298710 725 False 843 843 87.6360 2987 3719 1 chr5D.!!$F1 732
14 TraesCS7B01G289200 chr5D 544203743 544204403 660 False 728 728 86.6070 3052 3719 1 chr5D.!!$F3 667
15 TraesCS7B01G289200 chr3B 127302646 127303334 688 False 819 819 88.1090 3025 3719 1 chr3B.!!$F1 694

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
119 120 0.034863 GGGGTATGAAGCGGGTTTGA 60.035 55.0 0.0 0.0 0.0 2.69 F
1291 3107 0.037326 CGCAGACCAAGGAGTAAGCA 60.037 55.0 0.0 0.0 0.0 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1359 3175 0.389426 AATTCCGGTTCCACGAGTCG 60.389 55.0 11.85 11.85 35.47 4.18 R
2781 4652 0.035739 TTGTTTGGTCCTCGGTAGCC 59.964 55.0 0.00 0.00 0.00 3.93 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.793299 ATTTGGGTTGGATATGGGGG 57.207 50.000 0.00 0.00 0.00 5.40
42 43 4.415783 GGTCAGCCCGGACATTTT 57.584 55.556 0.73 0.00 39.59 1.82
43 44 1.883021 GGTCAGCCCGGACATTTTG 59.117 57.895 0.73 0.00 39.59 2.44
44 45 0.608035 GGTCAGCCCGGACATTTTGA 60.608 55.000 0.73 0.00 39.59 2.69
45 46 1.463674 GTCAGCCCGGACATTTTGAT 58.536 50.000 0.73 0.00 37.73 2.57
46 47 1.133025 GTCAGCCCGGACATTTTGATG 59.867 52.381 0.73 0.00 37.73 3.07
47 48 0.457035 CAGCCCGGACATTTTGATGG 59.543 55.000 0.73 0.00 0.00 3.51
48 49 1.141665 GCCCGGACATTTTGATGGC 59.858 57.895 0.73 0.00 0.00 4.40
49 50 1.322538 GCCCGGACATTTTGATGGCT 61.323 55.000 0.73 0.00 34.61 4.75
50 51 0.457035 CCCGGACATTTTGATGGCTG 59.543 55.000 0.73 0.00 35.70 4.85
51 52 1.176527 CCGGACATTTTGATGGCTGT 58.823 50.000 0.00 0.00 34.09 4.40
52 53 1.545582 CCGGACATTTTGATGGCTGTT 59.454 47.619 0.00 0.00 34.09 3.16
53 54 2.029110 CCGGACATTTTGATGGCTGTTT 60.029 45.455 0.00 0.00 34.09 2.83
54 55 2.988493 CGGACATTTTGATGGCTGTTTG 59.012 45.455 0.00 0.00 31.30 2.93
55 56 3.305267 CGGACATTTTGATGGCTGTTTGA 60.305 43.478 0.00 0.00 31.30 2.69
56 57 4.240096 GGACATTTTGATGGCTGTTTGAG 58.760 43.478 0.00 0.00 0.00 3.02
57 58 4.022068 GGACATTTTGATGGCTGTTTGAGA 60.022 41.667 0.00 0.00 0.00 3.27
58 59 5.130292 ACATTTTGATGGCTGTTTGAGAG 57.870 39.130 0.00 0.00 0.00 3.20
59 60 4.021719 ACATTTTGATGGCTGTTTGAGAGG 60.022 41.667 0.00 0.00 0.00 3.69
60 61 1.538047 TTGATGGCTGTTTGAGAGGC 58.462 50.000 0.00 0.00 36.55 4.70
61 62 0.322816 TGATGGCTGTTTGAGAGGCC 60.323 55.000 0.00 0.00 44.31 5.19
62 63 1.000396 ATGGCTGTTTGAGAGGCCC 60.000 57.895 0.00 0.00 43.50 5.80
63 64 2.747855 GGCTGTTTGAGAGGCCCG 60.748 66.667 0.00 0.00 38.77 6.13
64 65 2.032681 GCTGTTTGAGAGGCCCGT 59.967 61.111 0.00 0.00 0.00 5.28
65 66 2.035442 GCTGTTTGAGAGGCCCGTC 61.035 63.158 0.00 0.00 0.00 4.79
66 67 1.674057 CTGTTTGAGAGGCCCGTCT 59.326 57.895 0.00 0.00 0.00 4.18
67 68 0.671781 CTGTTTGAGAGGCCCGTCTG 60.672 60.000 0.00 0.00 0.00 3.51
68 69 1.376037 GTTTGAGAGGCCCGTCTGG 60.376 63.158 0.00 0.00 37.09 3.86
69 70 1.535444 TTTGAGAGGCCCGTCTGGA 60.535 57.895 0.00 0.00 37.49 3.86
70 71 0.909610 TTTGAGAGGCCCGTCTGGAT 60.910 55.000 0.00 0.00 37.49 3.41
71 72 1.330655 TTGAGAGGCCCGTCTGGATC 61.331 60.000 0.00 0.00 37.49 3.36
72 73 1.758514 GAGAGGCCCGTCTGGATCA 60.759 63.158 0.00 0.00 37.49 2.92
73 74 1.306141 AGAGGCCCGTCTGGATCAA 60.306 57.895 0.00 0.00 37.49 2.57
74 75 0.692419 AGAGGCCCGTCTGGATCAAT 60.692 55.000 0.00 0.00 37.49 2.57
75 76 1.048601 GAGGCCCGTCTGGATCAATA 58.951 55.000 0.00 0.00 37.49 1.90
76 77 1.416401 GAGGCCCGTCTGGATCAATAA 59.584 52.381 0.00 0.00 37.49 1.40
77 78 1.843851 AGGCCCGTCTGGATCAATAAA 59.156 47.619 0.00 0.00 37.49 1.40
78 79 2.443255 AGGCCCGTCTGGATCAATAAAT 59.557 45.455 0.00 0.00 37.49 1.40
79 80 2.814336 GGCCCGTCTGGATCAATAAATC 59.186 50.000 0.00 0.00 37.49 2.17
80 81 2.480419 GCCCGTCTGGATCAATAAATCG 59.520 50.000 0.00 0.00 37.49 3.34
81 82 3.728845 CCCGTCTGGATCAATAAATCGT 58.271 45.455 0.00 0.00 37.49 3.73
82 83 3.494626 CCCGTCTGGATCAATAAATCGTG 59.505 47.826 0.00 0.00 37.49 4.35
83 84 4.368315 CCGTCTGGATCAATAAATCGTGA 58.632 43.478 0.00 0.00 37.49 4.35
84 85 4.209288 CCGTCTGGATCAATAAATCGTGAC 59.791 45.833 0.00 0.00 37.49 3.67
85 86 4.209288 CGTCTGGATCAATAAATCGTGACC 59.791 45.833 0.00 0.00 31.05 4.02
86 87 4.209288 GTCTGGATCAATAAATCGTGACCG 59.791 45.833 0.00 0.00 0.00 4.79
87 88 3.462982 TGGATCAATAAATCGTGACCGG 58.537 45.455 0.00 0.00 33.95 5.28
88 89 2.806244 GGATCAATAAATCGTGACCGGG 59.194 50.000 6.32 0.00 33.95 5.73
89 90 1.658994 TCAATAAATCGTGACCGGGC 58.341 50.000 6.32 1.57 33.95 6.13
90 91 0.303493 CAATAAATCGTGACCGGGCG 59.697 55.000 6.32 7.78 33.95 6.13
91 92 0.812412 AATAAATCGTGACCGGGCGG 60.812 55.000 6.32 0.00 42.03 6.13
110 111 4.250305 CCGCCCGGGGGTATGAAG 62.250 72.222 33.31 15.20 37.65 3.02
111 112 4.929707 CGCCCGGGGGTATGAAGC 62.930 72.222 28.85 6.42 37.65 3.86
112 113 4.929707 GCCCGGGGGTATGAAGCG 62.930 72.222 25.28 0.00 37.65 4.68
113 114 4.250305 CCCGGGGGTATGAAGCGG 62.250 72.222 14.71 0.00 0.00 5.52
114 115 4.250305 CCGGGGGTATGAAGCGGG 62.250 72.222 0.00 0.00 0.00 6.13
115 116 3.476419 CGGGGGTATGAAGCGGGT 61.476 66.667 0.00 0.00 0.00 5.28
116 117 3.004090 GGGGGTATGAAGCGGGTT 58.996 61.111 0.00 0.00 0.00 4.11
117 118 1.305287 GGGGGTATGAAGCGGGTTT 59.695 57.895 0.00 0.00 0.00 3.27
118 119 1.035385 GGGGGTATGAAGCGGGTTTG 61.035 60.000 0.00 0.00 0.00 2.93
119 120 0.034863 GGGGTATGAAGCGGGTTTGA 60.035 55.000 0.00 0.00 0.00 2.69
120 121 1.379527 GGGTATGAAGCGGGTTTGAG 58.620 55.000 0.00 0.00 0.00 3.02
121 122 1.339727 GGGTATGAAGCGGGTTTGAGT 60.340 52.381 0.00 0.00 0.00 3.41
122 123 1.737793 GGTATGAAGCGGGTTTGAGTG 59.262 52.381 0.00 0.00 0.00 3.51
123 124 1.737793 GTATGAAGCGGGTTTGAGTGG 59.262 52.381 0.00 0.00 0.00 4.00
124 125 0.110486 ATGAAGCGGGTTTGAGTGGT 59.890 50.000 0.00 0.00 0.00 4.16
125 126 0.106918 TGAAGCGGGTTTGAGTGGTT 60.107 50.000 0.00 0.00 0.00 3.67
126 127 0.591659 GAAGCGGGTTTGAGTGGTTC 59.408 55.000 0.00 0.00 0.00 3.62
127 128 1.164041 AAGCGGGTTTGAGTGGTTCG 61.164 55.000 0.00 0.00 0.00 3.95
128 129 2.613506 GCGGGTTTGAGTGGTTCGG 61.614 63.158 0.00 0.00 0.00 4.30
129 130 1.227734 CGGGTTTGAGTGGTTCGGT 60.228 57.895 0.00 0.00 0.00 4.69
130 131 0.816421 CGGGTTTGAGTGGTTCGGTT 60.816 55.000 0.00 0.00 0.00 4.44
131 132 0.666374 GGGTTTGAGTGGTTCGGTTG 59.334 55.000 0.00 0.00 0.00 3.77
132 133 1.385528 GGTTTGAGTGGTTCGGTTGT 58.614 50.000 0.00 0.00 0.00 3.32
133 134 2.563702 GGTTTGAGTGGTTCGGTTGTA 58.436 47.619 0.00 0.00 0.00 2.41
134 135 2.546789 GGTTTGAGTGGTTCGGTTGTAG 59.453 50.000 0.00 0.00 0.00 2.74
135 136 3.460103 GTTTGAGTGGTTCGGTTGTAGA 58.540 45.455 0.00 0.00 0.00 2.59
136 137 4.062991 GTTTGAGTGGTTCGGTTGTAGAT 58.937 43.478 0.00 0.00 0.00 1.98
137 138 3.313012 TGAGTGGTTCGGTTGTAGATG 57.687 47.619 0.00 0.00 0.00 2.90
138 139 2.000447 GAGTGGTTCGGTTGTAGATGC 59.000 52.381 0.00 0.00 0.00 3.91
139 140 1.623811 AGTGGTTCGGTTGTAGATGCT 59.376 47.619 0.00 0.00 0.00 3.79
140 141 2.000447 GTGGTTCGGTTGTAGATGCTC 59.000 52.381 0.00 0.00 0.00 4.26
141 142 1.899814 TGGTTCGGTTGTAGATGCTCT 59.100 47.619 0.00 0.00 0.00 4.09
142 143 3.093814 TGGTTCGGTTGTAGATGCTCTA 58.906 45.455 0.00 0.00 0.00 2.43
143 144 3.512329 TGGTTCGGTTGTAGATGCTCTAA 59.488 43.478 0.00 0.00 29.58 2.10
144 145 3.864003 GGTTCGGTTGTAGATGCTCTAAC 59.136 47.826 0.00 0.00 29.58 2.34
145 146 4.491676 GTTCGGTTGTAGATGCTCTAACA 58.508 43.478 0.00 0.00 29.58 2.41
146 147 4.106029 TCGGTTGTAGATGCTCTAACAC 57.894 45.455 0.00 0.00 29.58 3.32
147 148 3.508402 TCGGTTGTAGATGCTCTAACACA 59.492 43.478 0.00 0.00 29.58 3.72
148 149 3.612860 CGGTTGTAGATGCTCTAACACAC 59.387 47.826 0.00 0.00 29.58 3.82
149 150 3.612860 GGTTGTAGATGCTCTAACACACG 59.387 47.826 0.00 0.00 29.58 4.49
150 151 3.503827 TGTAGATGCTCTAACACACGG 57.496 47.619 0.00 0.00 29.58 4.94
151 152 3.086282 TGTAGATGCTCTAACACACGGA 58.914 45.455 0.00 0.00 29.58 4.69
152 153 2.656560 AGATGCTCTAACACACGGAC 57.343 50.000 0.00 0.00 0.00 4.79
153 154 1.893137 AGATGCTCTAACACACGGACA 59.107 47.619 0.00 0.00 0.00 4.02
154 155 1.993370 GATGCTCTAACACACGGACAC 59.007 52.381 0.00 0.00 0.00 3.67
155 156 0.747852 TGCTCTAACACACGGACACA 59.252 50.000 0.00 0.00 0.00 3.72
156 157 1.137513 GCTCTAACACACGGACACAC 58.862 55.000 0.00 0.00 0.00 3.82
157 158 1.537348 GCTCTAACACACGGACACACA 60.537 52.381 0.00 0.00 0.00 3.72
158 159 2.124903 CTCTAACACACGGACACACAC 58.875 52.381 0.00 0.00 0.00 3.82
159 160 1.477295 TCTAACACACGGACACACACA 59.523 47.619 0.00 0.00 0.00 3.72
160 161 1.591158 CTAACACACGGACACACACAC 59.409 52.381 0.00 0.00 0.00 3.82
161 162 1.022451 AACACACGGACACACACACC 61.022 55.000 0.00 0.00 0.00 4.16
162 163 2.177580 CACACGGACACACACACCC 61.178 63.158 0.00 0.00 0.00 4.61
163 164 2.363975 ACACGGACACACACACCCT 61.364 57.895 0.00 0.00 0.00 4.34
164 165 1.044231 ACACGGACACACACACCCTA 61.044 55.000 0.00 0.00 0.00 3.53
165 166 0.320374 CACGGACACACACACCCTAT 59.680 55.000 0.00 0.00 0.00 2.57
166 167 0.606604 ACGGACACACACACCCTATC 59.393 55.000 0.00 0.00 0.00 2.08
167 168 0.895530 CGGACACACACACCCTATCT 59.104 55.000 0.00 0.00 0.00 1.98
168 169 1.275291 CGGACACACACACCCTATCTT 59.725 52.381 0.00 0.00 0.00 2.40
169 170 2.289444 CGGACACACACACCCTATCTTT 60.289 50.000 0.00 0.00 0.00 2.52
170 171 3.056393 CGGACACACACACCCTATCTTTA 60.056 47.826 0.00 0.00 0.00 1.85
171 172 4.382685 CGGACACACACACCCTATCTTTAT 60.383 45.833 0.00 0.00 0.00 1.40
172 173 5.163488 CGGACACACACACCCTATCTTTATA 60.163 44.000 0.00 0.00 0.00 0.98
173 174 6.281405 GGACACACACACCCTATCTTTATAG 58.719 44.000 0.00 0.00 35.73 1.31
174 175 5.671493 ACACACACACCCTATCTTTATAGC 58.329 41.667 0.00 0.00 34.78 2.97
175 176 5.188948 ACACACACACCCTATCTTTATAGCA 59.811 40.000 0.00 0.00 34.78 3.49
176 177 5.523916 CACACACACCCTATCTTTATAGCAC 59.476 44.000 0.00 0.00 34.78 4.40
177 178 5.057149 CACACACCCTATCTTTATAGCACC 58.943 45.833 0.00 0.00 34.78 5.01
178 179 4.969359 ACACACCCTATCTTTATAGCACCT 59.031 41.667 0.00 0.00 34.78 4.00
179 180 5.428783 ACACACCCTATCTTTATAGCACCTT 59.571 40.000 0.00 0.00 34.78 3.50
180 181 5.992217 CACACCCTATCTTTATAGCACCTTC 59.008 44.000 0.00 0.00 34.78 3.46
181 182 5.665812 ACACCCTATCTTTATAGCACCTTCA 59.334 40.000 0.00 0.00 34.78 3.02
182 183 6.157994 ACACCCTATCTTTATAGCACCTTCAA 59.842 38.462 0.00 0.00 34.78 2.69
183 184 6.708054 CACCCTATCTTTATAGCACCTTCAAG 59.292 42.308 0.00 0.00 34.78 3.02
184 185 6.615726 ACCCTATCTTTATAGCACCTTCAAGA 59.384 38.462 0.00 0.00 34.78 3.02
185 186 7.158021 CCCTATCTTTATAGCACCTTCAAGAG 58.842 42.308 0.00 0.00 34.78 2.85
186 187 7.015682 CCCTATCTTTATAGCACCTTCAAGAGA 59.984 40.741 0.00 0.00 34.78 3.10
187 188 8.592809 CCTATCTTTATAGCACCTTCAAGAGAT 58.407 37.037 0.00 0.00 34.78 2.75
188 189 9.995003 CTATCTTTATAGCACCTTCAAGAGATT 57.005 33.333 0.00 0.00 0.00 2.40
189 190 8.674263 ATCTTTATAGCACCTTCAAGAGATTG 57.326 34.615 0.00 0.00 0.00 2.67
190 191 7.851228 TCTTTATAGCACCTTCAAGAGATTGA 58.149 34.615 0.00 0.00 0.00 2.57
191 192 7.984050 TCTTTATAGCACCTTCAAGAGATTGAG 59.016 37.037 0.00 0.00 31.87 3.02
192 193 2.709213 AGCACCTTCAAGAGATTGAGC 58.291 47.619 0.00 0.00 31.87 4.26
193 194 2.039480 AGCACCTTCAAGAGATTGAGCA 59.961 45.455 0.00 0.00 31.87 4.26
194 195 2.419324 GCACCTTCAAGAGATTGAGCAG 59.581 50.000 0.00 0.00 31.87 4.24
195 196 3.867600 GCACCTTCAAGAGATTGAGCAGA 60.868 47.826 0.00 0.00 31.87 4.26
196 197 3.683822 CACCTTCAAGAGATTGAGCAGAC 59.316 47.826 0.00 0.00 31.87 3.51
197 198 3.326006 ACCTTCAAGAGATTGAGCAGACA 59.674 43.478 0.00 0.00 31.87 3.41
198 199 3.683822 CCTTCAAGAGATTGAGCAGACAC 59.316 47.826 0.00 0.00 31.87 3.67
199 200 4.313282 CTTCAAGAGATTGAGCAGACACA 58.687 43.478 0.00 0.00 31.87 3.72
200 201 4.548451 TCAAGAGATTGAGCAGACACAT 57.452 40.909 0.00 0.00 0.00 3.21
201 202 4.502016 TCAAGAGATTGAGCAGACACATC 58.498 43.478 0.00 0.00 0.00 3.06
202 203 4.020839 TCAAGAGATTGAGCAGACACATCA 60.021 41.667 0.00 0.00 0.00 3.07
203 204 4.757019 AGAGATTGAGCAGACACATCAT 57.243 40.909 0.00 0.00 0.00 2.45
204 205 4.695396 AGAGATTGAGCAGACACATCATC 58.305 43.478 0.00 0.00 0.00 2.92
205 206 4.406326 AGAGATTGAGCAGACACATCATCT 59.594 41.667 0.00 0.00 0.00 2.90
206 207 5.100344 AGATTGAGCAGACACATCATCTT 57.900 39.130 0.00 0.00 0.00 2.40
207 208 6.097981 AGAGATTGAGCAGACACATCATCTTA 59.902 38.462 0.00 0.00 0.00 2.10
208 209 6.647229 AGATTGAGCAGACACATCATCTTAA 58.353 36.000 0.00 0.00 0.00 1.85
209 210 6.762187 AGATTGAGCAGACACATCATCTTAAG 59.238 38.462 0.00 0.00 0.00 1.85
210 211 5.665916 TGAGCAGACACATCATCTTAAGA 57.334 39.130 7.82 7.82 0.00 2.10
211 212 6.231258 TGAGCAGACACATCATCTTAAGAT 57.769 37.500 12.37 12.37 34.56 2.40
212 213 6.279123 TGAGCAGACACATCATCTTAAGATC 58.721 40.000 15.24 3.57 31.21 2.75
213 214 6.097981 TGAGCAGACACATCATCTTAAGATCT 59.902 38.462 15.24 5.89 31.21 2.75
214 215 7.286316 TGAGCAGACACATCATCTTAAGATCTA 59.714 37.037 15.24 7.20 31.21 1.98
215 216 7.432869 AGCAGACACATCATCTTAAGATCTAC 58.567 38.462 15.24 3.88 31.21 2.59
216 217 7.069208 AGCAGACACATCATCTTAAGATCTACA 59.931 37.037 15.24 0.67 31.21 2.74
217 218 7.708322 GCAGACACATCATCTTAAGATCTACAA 59.292 37.037 15.24 0.00 31.21 2.41
218 219 9.591792 CAGACACATCATCTTAAGATCTACAAA 57.408 33.333 15.24 0.00 31.21 2.83
219 220 9.814899 AGACACATCATCTTAAGATCTACAAAG 57.185 33.333 15.24 2.93 31.21 2.77
220 221 9.593134 GACACATCATCTTAAGATCTACAAAGT 57.407 33.333 15.24 8.26 31.21 2.66
221 222 9.593134 ACACATCATCTTAAGATCTACAAAGTC 57.407 33.333 15.24 0.00 31.21 3.01
222 223 8.750416 CACATCATCTTAAGATCTACAAAGTCG 58.250 37.037 15.24 0.82 31.21 4.18
223 224 7.436673 ACATCATCTTAAGATCTACAAAGTCGC 59.563 37.037 15.24 0.00 31.21 5.19
224 225 6.273825 TCATCTTAAGATCTACAAAGTCGCC 58.726 40.000 15.24 0.00 31.21 5.54
225 226 5.654603 TCTTAAGATCTACAAAGTCGCCA 57.345 39.130 0.00 0.00 0.00 5.69
226 227 6.222038 TCTTAAGATCTACAAAGTCGCCAT 57.778 37.500 0.00 0.00 0.00 4.40
227 228 7.342769 TCTTAAGATCTACAAAGTCGCCATA 57.657 36.000 0.00 0.00 0.00 2.74
228 229 7.426410 TCTTAAGATCTACAAAGTCGCCATAG 58.574 38.462 0.00 0.00 0.00 2.23
229 230 5.854010 AAGATCTACAAAGTCGCCATAGA 57.146 39.130 0.00 0.00 0.00 1.98
230 231 5.189659 AGATCTACAAAGTCGCCATAGAC 57.810 43.478 0.00 0.00 41.23 2.59
231 232 3.416119 TCTACAAAGTCGCCATAGACG 57.584 47.619 0.00 0.00 45.26 4.18
232 233 1.852895 CTACAAAGTCGCCATAGACGC 59.147 52.381 0.00 0.00 45.26 5.19
233 234 0.246635 ACAAAGTCGCCATAGACGCT 59.753 50.000 0.00 0.00 45.26 5.07
234 235 1.337823 ACAAAGTCGCCATAGACGCTT 60.338 47.619 0.00 0.00 45.26 4.68
235 236 1.732259 CAAAGTCGCCATAGACGCTTT 59.268 47.619 0.00 0.00 45.26 3.51
236 237 1.641577 AAGTCGCCATAGACGCTTTC 58.358 50.000 0.00 0.00 45.26 2.62
237 238 0.530744 AGTCGCCATAGACGCTTTCA 59.469 50.000 0.00 0.00 45.26 2.69
238 239 1.137086 AGTCGCCATAGACGCTTTCAT 59.863 47.619 0.00 0.00 45.26 2.57
239 240 2.361119 AGTCGCCATAGACGCTTTCATA 59.639 45.455 0.00 0.00 45.26 2.15
240 241 2.726760 GTCGCCATAGACGCTTTCATAG 59.273 50.000 0.00 0.00 0.00 2.23
241 242 1.457303 CGCCATAGACGCTTTCATAGC 59.543 52.381 0.00 0.00 46.83 2.97
259 260 4.719997 CGATGGAAGCGTCTCCTC 57.280 61.111 0.00 0.00 43.21 3.71
260 261 2.111162 CGATGGAAGCGTCTCCTCT 58.889 57.895 0.00 0.00 43.21 3.69
261 262 0.457851 CGATGGAAGCGTCTCCTCTT 59.542 55.000 0.00 0.00 43.21 2.85
262 263 1.134965 CGATGGAAGCGTCTCCTCTTT 60.135 52.381 0.00 0.00 43.21 2.52
263 264 2.545731 GATGGAAGCGTCTCCTCTTTC 58.454 52.381 0.00 0.00 36.35 2.62
264 265 1.633774 TGGAAGCGTCTCCTCTTTCT 58.366 50.000 0.00 0.00 36.35 2.52
265 266 1.273606 TGGAAGCGTCTCCTCTTTCTG 59.726 52.381 0.00 0.00 36.35 3.02
266 267 1.546476 GGAAGCGTCTCCTCTTTCTGA 59.454 52.381 0.00 0.00 32.21 3.27
267 268 2.028930 GGAAGCGTCTCCTCTTTCTGAA 60.029 50.000 0.00 0.00 32.21 3.02
268 269 3.368948 GGAAGCGTCTCCTCTTTCTGAAT 60.369 47.826 0.00 0.00 32.21 2.57
269 270 3.244033 AGCGTCTCCTCTTTCTGAATG 57.756 47.619 0.00 0.00 0.00 2.67
270 271 1.663135 GCGTCTCCTCTTTCTGAATGC 59.337 52.381 0.00 0.00 0.00 3.56
271 272 2.932622 GCGTCTCCTCTTTCTGAATGCA 60.933 50.000 0.00 0.00 0.00 3.96
272 273 2.670414 CGTCTCCTCTTTCTGAATGCAC 59.330 50.000 0.00 0.00 0.00 4.57
273 274 3.668447 GTCTCCTCTTTCTGAATGCACA 58.332 45.455 0.00 0.00 0.00 4.57
274 275 4.260170 GTCTCCTCTTTCTGAATGCACAT 58.740 43.478 0.00 0.00 0.00 3.21
275 276 4.699257 GTCTCCTCTTTCTGAATGCACATT 59.301 41.667 0.00 0.00 0.00 2.71
276 277 5.877012 GTCTCCTCTTTCTGAATGCACATTA 59.123 40.000 0.00 0.00 0.00 1.90
277 278 5.877012 TCTCCTCTTTCTGAATGCACATTAC 59.123 40.000 0.00 0.00 0.00 1.89
278 279 5.809001 TCCTCTTTCTGAATGCACATTACT 58.191 37.500 0.00 0.00 0.00 2.24
279 280 5.645067 TCCTCTTTCTGAATGCACATTACTG 59.355 40.000 0.00 0.00 0.00 2.74
280 281 5.163683 CCTCTTTCTGAATGCACATTACTGG 60.164 44.000 0.00 0.00 0.00 4.00
281 282 5.559770 TCTTTCTGAATGCACATTACTGGA 58.440 37.500 0.00 0.00 0.00 3.86
282 283 6.182627 TCTTTCTGAATGCACATTACTGGAT 58.817 36.000 0.00 0.00 0.00 3.41
283 284 7.337938 TCTTTCTGAATGCACATTACTGGATA 58.662 34.615 0.00 0.00 0.00 2.59
284 285 7.496920 TCTTTCTGAATGCACATTACTGGATAG 59.503 37.037 0.00 0.00 0.00 2.08
285 286 5.059161 TCTGAATGCACATTACTGGATAGC 58.941 41.667 0.00 0.00 0.00 2.97
286 287 4.136796 TGAATGCACATTACTGGATAGCC 58.863 43.478 0.00 0.00 0.00 3.93
287 288 4.141413 TGAATGCACATTACTGGATAGCCT 60.141 41.667 0.00 0.00 34.31 4.58
288 289 3.198409 TGCACATTACTGGATAGCCTG 57.802 47.619 1.87 1.87 38.92 4.85
289 290 2.505407 TGCACATTACTGGATAGCCTGT 59.495 45.455 14.33 14.33 46.60 4.00
290 291 3.054434 TGCACATTACTGGATAGCCTGTT 60.054 43.478 15.12 0.00 42.99 3.16
291 292 4.163268 TGCACATTACTGGATAGCCTGTTA 59.837 41.667 15.12 6.53 42.99 2.41
292 293 5.123227 GCACATTACTGGATAGCCTGTTAA 58.877 41.667 15.12 7.87 42.99 2.01
293 294 5.588648 GCACATTACTGGATAGCCTGTTAAA 59.411 40.000 15.12 4.86 42.99 1.52
294 295 6.094881 GCACATTACTGGATAGCCTGTTAAAA 59.905 38.462 15.12 4.14 42.99 1.52
295 296 7.201821 GCACATTACTGGATAGCCTGTTAAAAT 60.202 37.037 15.12 6.31 42.99 1.82
296 297 9.337396 CACATTACTGGATAGCCTGTTAAAATA 57.663 33.333 15.12 0.00 42.99 1.40
297 298 9.914834 ACATTACTGGATAGCCTGTTAAAATAA 57.085 29.630 15.12 2.70 42.99 1.40
302 303 9.474313 ACTGGATAGCCTGTTAAAATAAAATCA 57.526 29.630 3.37 0.00 42.99 2.57
331 332 6.775594 ATACGAGCACCATATCTATTAGCA 57.224 37.500 0.00 0.00 0.00 3.49
332 333 5.667539 ACGAGCACCATATCTATTAGCAT 57.332 39.130 0.00 0.00 0.00 3.79
350 351 2.041405 GAGCCTAGGCACCCTCCT 60.041 66.667 34.70 13.13 44.88 3.69
364 365 2.203788 TCCTCACCACCGGCTTCT 60.204 61.111 0.00 0.00 0.00 2.85
365 366 0.970937 CTCCTCACCACCGGCTTCTA 60.971 60.000 0.00 0.00 0.00 2.10
386 396 0.250513 AGCCGAAGAGGTGAATCCAC 59.749 55.000 0.00 0.00 43.70 4.02
388 398 0.460284 CCGAAGAGGTGAATCCACGG 60.460 60.000 0.00 0.00 44.09 4.94
393 403 0.539986 GAGGTGAATCCACGGGCTTA 59.460 55.000 0.00 0.00 44.09 3.09
395 405 1.141053 AGGTGAATCCACGGGCTTATC 59.859 52.381 0.00 0.00 44.09 1.75
396 406 1.217882 GTGAATCCACGGGCTTATCG 58.782 55.000 0.00 0.00 33.10 2.92
421 432 4.051922 CGAGACCGAGGAGGAATATTTTG 58.948 47.826 0.00 0.00 45.00 2.44
423 434 2.879026 GACCGAGGAGGAATATTTTGCC 59.121 50.000 0.00 0.00 45.00 4.52
424 435 2.230660 CCGAGGAGGAATATTTTGCCC 58.769 52.381 0.00 0.00 45.00 5.36
425 436 2.158608 CCGAGGAGGAATATTTTGCCCT 60.159 50.000 0.00 0.00 45.00 5.19
426 437 3.072476 CCGAGGAGGAATATTTTGCCCTA 59.928 47.826 0.00 0.00 45.00 3.53
427 438 4.065789 CGAGGAGGAATATTTTGCCCTAC 58.934 47.826 0.00 0.00 28.71 3.18
428 439 4.202367 CGAGGAGGAATATTTTGCCCTACT 60.202 45.833 5.52 5.52 42.47 2.57
429 440 5.309638 GAGGAGGAATATTTTGCCCTACTC 58.690 45.833 14.40 14.40 46.15 2.59
431 442 4.822350 GGAGGAATATTTTGCCCTACTCAC 59.178 45.833 0.00 0.00 0.00 3.51
432 443 5.437060 GAGGAATATTTTGCCCTACTCACA 58.563 41.667 0.00 0.00 0.00 3.58
433 444 5.193679 AGGAATATTTTGCCCTACTCACAC 58.806 41.667 0.00 0.00 0.00 3.82
434 445 5.044846 AGGAATATTTTGCCCTACTCACACT 60.045 40.000 0.00 0.00 0.00 3.55
435 446 5.066505 GGAATATTTTGCCCTACTCACACTG 59.933 44.000 0.00 0.00 0.00 3.66
436 447 1.604604 TTTTGCCCTACTCACACTGC 58.395 50.000 0.00 0.00 0.00 4.40
437 448 0.602638 TTTGCCCTACTCACACTGCG 60.603 55.000 0.00 0.00 0.00 5.18
453 464 3.431572 CACTGCGAGAGAGGAAAGAAAAG 59.568 47.826 0.00 0.00 0.00 2.27
454 465 3.070302 ACTGCGAGAGAGGAAAGAAAAGT 59.930 43.478 0.00 0.00 0.00 2.66
458 469 4.376514 GCGAGAGAGGAAAGAAAAGTTTCG 60.377 45.833 0.00 0.00 41.92 3.46
461 472 4.816925 AGAGAGGAAAGAAAAGTTTCGGTG 59.183 41.667 0.00 0.00 41.92 4.94
464 475 2.545113 GGAAAGAAAAGTTTCGGTGGGC 60.545 50.000 0.00 0.00 41.92 5.36
466 477 1.318576 AGAAAAGTTTCGGTGGGCAG 58.681 50.000 0.00 0.00 41.92 4.85
472 483 0.250338 GTTTCGGTGGGCAGAGACTT 60.250 55.000 0.00 0.00 0.00 3.01
473 484 1.001633 GTTTCGGTGGGCAGAGACTTA 59.998 52.381 0.00 0.00 0.00 2.24
516 528 9.931210 ACTGAGCATTAATAATTACGTAAAAGC 57.069 29.630 12.81 3.42 0.00 3.51
523 535 9.677567 ATTAATAATTACGTAAAAGCAGCATGG 57.322 29.630 12.81 0.00 35.86 3.66
571 583 2.345760 CCAGCAATTCCAAGCGGCT 61.346 57.895 0.00 0.00 35.48 5.52
616 631 4.982295 CACGTACTCAAAGATGACTGTTCA 59.018 41.667 0.00 0.00 35.73 3.18
619 634 6.706270 ACGTACTCAAAGATGACTGTTCATTT 59.294 34.615 0.00 0.00 42.95 2.32
622 637 6.963796 ACTCAAAGATGACTGTTCATTTGTC 58.036 36.000 0.00 0.00 42.95 3.18
642 657 4.997395 TGTCCTTGTCTGCAGAAAACTATC 59.003 41.667 20.19 4.49 0.00 2.08
649 667 5.466728 TGTCTGCAGAAAACTATCACTTCAC 59.533 40.000 20.19 0.73 0.00 3.18
701 725 1.875963 AAAAAGATGAGGTGCGGCG 59.124 52.632 0.51 0.51 0.00 6.46
738 762 2.675348 GCAAGAAAAGATCCAGAGACGG 59.325 50.000 0.00 0.00 0.00 4.79
759 783 6.342111 ACGGAGAGTGAAAGGAAGATATTTC 58.658 40.000 0.00 0.00 36.24 2.17
763 787 7.929245 GGAGAGTGAAAGGAAGATATTTCTACC 59.071 40.741 0.00 0.00 36.57 3.18
802 829 2.229784 CTCATGGTGAAAACTCAAGCCC 59.770 50.000 0.00 0.00 0.00 5.19
805 832 0.961753 GGTGAAAACTCAAGCCCCAG 59.038 55.000 0.00 0.00 0.00 4.45
806 833 0.961753 GTGAAAACTCAAGCCCCAGG 59.038 55.000 0.00 0.00 0.00 4.45
807 834 0.178964 TGAAAACTCAAGCCCCAGGG 60.179 55.000 0.00 0.00 38.57 4.45
809 836 0.178961 AAAACTCAAGCCCCAGGGTC 60.179 55.000 4.22 0.00 37.65 4.46
810 837 1.068352 AAACTCAAGCCCCAGGGTCT 61.068 55.000 4.22 0.00 37.65 3.85
811 838 1.492993 AACTCAAGCCCCAGGGTCTC 61.493 60.000 4.22 0.00 37.65 3.36
815 842 1.083706 AAGCCCCAGGGTCTCTGAT 59.916 57.895 4.22 0.00 46.18 2.90
818 845 1.316266 CCCCAGGGTCTCTGATCCT 59.684 63.158 4.22 0.00 45.22 3.24
819 846 0.762461 CCCCAGGGTCTCTGATCCTC 60.762 65.000 4.22 0.00 39.22 3.71
990 2785 0.894835 TATGACGACTCCTGCAAGCA 59.105 50.000 0.00 0.00 0.00 3.91
995 2790 1.739562 GACTCCTGCAAGCACGAGG 60.740 63.158 19.97 8.73 34.77 4.63
1068 2870 1.482593 GAGCAAGGAAGTAGCTAGGCA 59.517 52.381 0.00 0.00 39.02 4.75
1069 2871 1.484240 AGCAAGGAAGTAGCTAGGCAG 59.516 52.381 0.00 0.00 36.73 4.85
1204 3016 3.371063 GTCGTCACCTGCCGGAGA 61.371 66.667 5.05 0.00 0.00 3.71
1291 3107 0.037326 CGCAGACCAAGGAGTAAGCA 60.037 55.000 0.00 0.00 0.00 3.91
1292 3108 1.608025 CGCAGACCAAGGAGTAAGCAA 60.608 52.381 0.00 0.00 0.00 3.91
1293 3109 2.079925 GCAGACCAAGGAGTAAGCAAG 58.920 52.381 0.00 0.00 0.00 4.01
1294 3110 2.079925 CAGACCAAGGAGTAAGCAAGC 58.920 52.381 0.00 0.00 0.00 4.01
1295 3111 1.079503 GACCAAGGAGTAAGCAAGCG 58.920 55.000 0.00 0.00 0.00 4.68
1329 3145 1.405821 GTTCTGCGCTCCTAGCTAAGA 59.594 52.381 9.73 0.00 39.60 2.10
1522 3344 5.011023 TCCATGCACATATCGACATAGTTCT 59.989 40.000 0.00 0.00 0.00 3.01
1538 3360 2.121009 GTTCTTATCTCCGAGCTTCGC 58.879 52.381 0.00 0.00 38.82 4.70
1563 3385 7.651704 GCCTTATCTTTAATTTTGTGTGTGTGT 59.348 33.333 0.00 0.00 0.00 3.72
1564 3386 8.967218 CCTTATCTTTAATTTTGTGTGTGTGTG 58.033 33.333 0.00 0.00 0.00 3.82
1565 3387 9.515020 CTTATCTTTAATTTTGTGTGTGTGTGT 57.485 29.630 0.00 0.00 0.00 3.72
1566 3388 7.754069 ATCTTTAATTTTGTGTGTGTGTGTG 57.246 32.000 0.00 0.00 0.00 3.82
1740 3575 4.622220 ATCAATTTGATTGGCTTGTGCCTC 60.622 41.667 6.06 0.00 44.53 4.70
2017 3865 2.744202 CTCCTTCACCAACGGAAATGAG 59.256 50.000 0.00 0.00 0.00 2.90
2029 3877 2.198304 GAAATGAGTGGGACGGGGCT 62.198 60.000 0.00 0.00 0.00 5.19
2097 3945 3.914312 TGAGCTTCTTCAACGAGGTAAG 58.086 45.455 0.00 0.00 0.00 2.34
2168 4019 2.535485 TTAGCCATCACCCTGCCACG 62.535 60.000 0.00 0.00 0.00 4.94
2199 4055 4.058721 TCCGTGTTCATCATGTATGGAG 57.941 45.455 0.00 0.00 36.15 3.86
2219 4076 4.323333 GGAGGTGGGTAAGAACTAAGAACC 60.323 50.000 0.00 0.00 0.00 3.62
2240 4097 2.194597 GTGGTGTTGGTGCAGGGA 59.805 61.111 0.00 0.00 0.00 4.20
2259 4116 1.739562 CTGGCTGACGAGCTCAACC 60.740 63.158 15.40 7.48 45.44 3.77
2297 4154 1.531748 GGCCATCTTCCCGGATGAA 59.468 57.895 0.73 0.00 44.01 2.57
2327 4184 2.029288 CACAAGCTGCGACATCGGT 61.029 57.895 3.08 0.00 40.23 4.69
2405 4262 1.671054 CCCGACCTCGCACATGTTT 60.671 57.895 0.00 0.00 38.18 2.83
2466 4323 3.482436 GACTCTGATACGGAGGAGTGAT 58.518 50.000 11.47 0.00 40.86 3.06
2480 4337 0.321671 AGTGATCACCACCAAGACGG 59.678 55.000 22.21 0.00 46.87 4.79
2493 4350 2.125391 GACGGCATGAGCAGCAGA 60.125 61.111 0.00 0.00 44.61 4.26
2494 4351 2.435586 ACGGCATGAGCAGCAGAC 60.436 61.111 0.00 0.00 44.61 3.51
2495 4352 3.561213 CGGCATGAGCAGCAGACG 61.561 66.667 0.00 0.00 44.61 4.18
2523 4384 3.547746 ACTCATAAGACGAGGAGAGGAC 58.452 50.000 0.00 0.00 34.66 3.85
2563 4426 3.742640 GCATGCCCTTCTCTCTCGTTTAT 60.743 47.826 6.36 0.00 0.00 1.40
2564 4427 4.501571 GCATGCCCTTCTCTCTCGTTTATA 60.502 45.833 6.36 0.00 0.00 0.98
2565 4428 4.650754 TGCCCTTCTCTCTCGTTTATAC 57.349 45.455 0.00 0.00 0.00 1.47
2566 4429 4.279145 TGCCCTTCTCTCTCGTTTATACT 58.721 43.478 0.00 0.00 0.00 2.12
2567 4430 4.098044 TGCCCTTCTCTCTCGTTTATACTG 59.902 45.833 0.00 0.00 0.00 2.74
2608 4471 6.238648 GGAATGGTTGTGATACGATTAAAGGG 60.239 42.308 0.00 0.00 0.00 3.95
2610 4473 5.806818 TGGTTGTGATACGATTAAAGGGAA 58.193 37.500 0.00 0.00 0.00 3.97
2611 4474 5.878116 TGGTTGTGATACGATTAAAGGGAAG 59.122 40.000 0.00 0.00 0.00 3.46
2612 4475 5.296035 GGTTGTGATACGATTAAAGGGAAGG 59.704 44.000 0.00 0.00 0.00 3.46
2613 4476 5.943349 TGTGATACGATTAAAGGGAAGGA 57.057 39.130 0.00 0.00 0.00 3.36
2614 4477 6.494666 TGTGATACGATTAAAGGGAAGGAT 57.505 37.500 0.00 0.00 0.00 3.24
2615 4478 6.895782 TGTGATACGATTAAAGGGAAGGATT 58.104 36.000 0.00 0.00 0.00 3.01
2616 4479 6.765989 TGTGATACGATTAAAGGGAAGGATTG 59.234 38.462 0.00 0.00 0.00 2.67
2617 4480 6.766467 GTGATACGATTAAAGGGAAGGATTGT 59.234 38.462 0.00 0.00 0.00 2.71
2640 4508 1.826340 ATGCGCACTAGGTGGACACA 61.826 55.000 14.90 0.00 33.64 3.72
2661 4529 1.442769 GCACTTCGCTGGAAAGATGA 58.557 50.000 0.00 0.00 37.77 2.92
2663 4531 2.413371 GCACTTCGCTGGAAAGATGAAC 60.413 50.000 0.00 0.00 37.77 3.18
2686 4554 4.091075 CGCATGACATGTGCTGATACTATC 59.909 45.833 15.62 0.00 40.37 2.08
2689 4557 6.453092 CATGACATGTGCTGATACTATCTCA 58.547 40.000 1.15 0.00 0.00 3.27
2690 4558 6.081872 TGACATGTGCTGATACTATCTCAG 57.918 41.667 1.15 0.00 42.47 3.35
2692 4560 6.772716 TGACATGTGCTGATACTATCTCAGTA 59.227 38.462 1.15 0.00 43.89 2.74
2693 4561 7.285401 TGACATGTGCTGATACTATCTCAGTAA 59.715 37.037 1.15 0.00 43.00 2.24
2694 4562 8.011844 ACATGTGCTGATACTATCTCAGTAAA 57.988 34.615 0.00 0.00 43.00 2.01
2695 4563 7.923344 ACATGTGCTGATACTATCTCAGTAAAC 59.077 37.037 0.00 0.85 43.00 2.01
2696 4564 6.806751 TGTGCTGATACTATCTCAGTAAACC 58.193 40.000 2.63 0.00 43.00 3.27
2715 4583 8.287503 AGTAAACCGAAACAAATGTAGATGAAC 58.712 33.333 0.00 0.00 0.00 3.18
2722 4590 7.059488 CGAAACAAATGTAGATGAACGGAAAAG 59.941 37.037 0.00 0.00 0.00 2.27
2723 4591 7.504924 AACAAATGTAGATGAACGGAAAAGA 57.495 32.000 0.00 0.00 0.00 2.52
2727 4595 3.678072 TGTAGATGAACGGAAAAGAAGCG 59.322 43.478 0.00 0.00 0.00 4.68
2737 4608 3.363673 CGGAAAAGAAGCGTACCTGTTTC 60.364 47.826 0.00 0.00 0.00 2.78
2738 4609 3.363673 GGAAAAGAAGCGTACCTGTTTCG 60.364 47.826 0.00 0.00 34.67 3.46
2739 4610 2.521105 AAGAAGCGTACCTGTTTCGT 57.479 45.000 0.00 0.00 34.67 3.85
2740 4611 3.648339 AAGAAGCGTACCTGTTTCGTA 57.352 42.857 0.00 0.00 34.67 3.43
2741 4612 3.213249 AGAAGCGTACCTGTTTCGTAG 57.787 47.619 0.00 0.00 34.67 3.51
2742 4613 2.555757 AGAAGCGTACCTGTTTCGTAGT 59.444 45.455 0.00 0.00 34.67 2.73
2743 4614 3.753272 AGAAGCGTACCTGTTTCGTAGTA 59.247 43.478 0.00 0.00 34.67 1.82
2744 4615 4.216257 AGAAGCGTACCTGTTTCGTAGTAA 59.784 41.667 0.00 0.00 34.67 2.24
2745 4616 4.088823 AGCGTACCTGTTTCGTAGTAAG 57.911 45.455 0.00 0.00 0.00 2.34
2755 4626 1.819928 TCGTAGTAAGGTACGGTGCA 58.180 50.000 3.79 0.00 44.81 4.57
2764 4635 3.716195 TACGGTGCAGGCATGGCT 61.716 61.111 17.44 17.44 0.00 4.75
2765 4636 3.974835 TACGGTGCAGGCATGGCTG 62.975 63.158 37.54 37.54 0.00 4.85
2767 4638 2.993264 GGTGCAGGCATGGCTGTT 60.993 61.111 39.61 12.24 0.00 3.16
2768 4639 1.678635 GGTGCAGGCATGGCTGTTA 60.679 57.895 39.61 29.33 0.00 2.41
2769 4640 1.660560 GGTGCAGGCATGGCTGTTAG 61.661 60.000 39.61 22.24 0.00 2.34
2770 4641 0.677731 GTGCAGGCATGGCTGTTAGA 60.678 55.000 39.61 23.68 0.00 2.10
2771 4642 0.038021 TGCAGGCATGGCTGTTAGAA 59.962 50.000 39.61 22.79 0.00 2.10
2772 4643 1.341285 TGCAGGCATGGCTGTTAGAAT 60.341 47.619 39.61 9.24 0.00 2.40
2773 4644 2.092484 TGCAGGCATGGCTGTTAGAATA 60.092 45.455 39.61 20.25 0.00 1.75
2774 4645 2.951642 GCAGGCATGGCTGTTAGAATAA 59.048 45.455 39.61 0.00 0.00 1.40
2775 4646 3.381272 GCAGGCATGGCTGTTAGAATAAA 59.619 43.478 39.61 0.00 0.00 1.40
2776 4647 4.038402 GCAGGCATGGCTGTTAGAATAAAT 59.962 41.667 39.61 7.04 0.00 1.40
2777 4648 5.766222 CAGGCATGGCTGTTAGAATAAATC 58.234 41.667 34.64 0.00 0.00 2.17
2778 4649 4.829492 AGGCATGGCTGTTAGAATAAATCC 59.171 41.667 22.69 0.00 0.00 3.01
2779 4650 4.320494 GGCATGGCTGTTAGAATAAATCCG 60.320 45.833 12.86 0.00 0.00 4.18
2780 4651 4.515191 GCATGGCTGTTAGAATAAATCCGA 59.485 41.667 0.00 0.00 0.00 4.55
2781 4652 5.334414 GCATGGCTGTTAGAATAAATCCGAG 60.334 44.000 0.00 0.00 0.00 4.63
2782 4653 4.703897 TGGCTGTTAGAATAAATCCGAGG 58.296 43.478 0.00 0.00 0.00 4.63
2783 4654 3.498777 GGCTGTTAGAATAAATCCGAGGC 59.501 47.826 0.00 0.00 0.00 4.70
2784 4655 4.381411 GCTGTTAGAATAAATCCGAGGCT 58.619 43.478 0.00 0.00 0.00 4.58
2785 4656 5.510861 GGCTGTTAGAATAAATCCGAGGCTA 60.511 44.000 0.00 0.00 0.00 3.93
2797 4668 1.601419 CGAGGCTACCGAGGACCAAA 61.601 60.000 0.00 0.00 0.00 3.28
2809 4680 2.875933 GAGGACCAAACAATCACACGAA 59.124 45.455 0.00 0.00 0.00 3.85
2810 4681 3.283751 AGGACCAAACAATCACACGAAA 58.716 40.909 0.00 0.00 0.00 3.46
2811 4682 3.888930 AGGACCAAACAATCACACGAAAT 59.111 39.130 0.00 0.00 0.00 2.17
2832 4703 7.272515 CGAAATACGGCACTGAAATTTGTTAAT 59.727 33.333 0.00 0.00 38.46 1.40
2835 4706 5.837437 ACGGCACTGAAATTTGTTAATGAA 58.163 33.333 0.00 0.00 0.00 2.57
2841 4712 8.981647 GCACTGAAATTTGTTAATGAAGTTCAT 58.018 29.630 12.75 12.75 38.60 2.57
2905 4780 1.065358 GACACCGTCACAATACCACG 58.935 55.000 0.00 0.00 32.09 4.94
2915 4790 0.951525 CAATACCACGCACCGGTCAA 60.952 55.000 2.59 0.00 37.99 3.18
2989 4867 4.130286 TGGCATATGTTACATCGTGTGA 57.870 40.909 0.00 0.00 0.00 3.58
2998 4876 0.252103 ACATCGTGTGACTACCCCCT 60.252 55.000 0.00 0.00 0.00 4.79
3028 4907 5.939764 TGAGAGCCTATGATACAAGTGTT 57.060 39.130 0.00 0.00 0.00 3.32
3080 4959 8.865420 TCTAAACACAATACTACTCAGAGTCT 57.135 34.615 6.27 0.00 0.00 3.24
3133 5012 3.054361 ACAGAACTCCAACAAACTCCACT 60.054 43.478 0.00 0.00 0.00 4.00
3139 5018 1.756538 CCAACAAACTCCACTTTGGCT 59.243 47.619 0.00 0.00 37.47 4.75
3170 5050 3.117550 CCATCACCCTGGATTTGTCCATA 60.118 47.826 0.00 0.00 39.34 2.74
3202 5083 7.450074 ACTTTCATGTACATTGGACTTGAGTA 58.550 34.615 15.03 8.73 33.88 2.59
3232 5113 1.621814 AGTACCGCTGCTACTCCAAAA 59.378 47.619 0.00 0.00 0.00 2.44
3238 5119 2.158449 CGCTGCTACTCCAAAAACTCTG 59.842 50.000 0.00 0.00 0.00 3.35
3251 5132 1.794714 AACTCTGTGTGACTCCACCT 58.205 50.000 0.00 0.00 42.53 4.00
3252 5133 1.043816 ACTCTGTGTGACTCCACCTG 58.956 55.000 0.00 0.00 42.53 4.00
3253 5134 0.320247 CTCTGTGTGACTCCACCTGC 60.320 60.000 0.00 0.00 42.53 4.85
3254 5135 1.048160 TCTGTGTGACTCCACCTGCA 61.048 55.000 0.00 0.00 42.53 4.41
3255 5136 0.179048 CTGTGTGACTCCACCTGCAA 60.179 55.000 0.00 0.00 42.53 4.08
3256 5137 0.179048 TGTGTGACTCCACCTGCAAG 60.179 55.000 0.00 0.00 42.53 4.01
3287 5172 4.286297 TGTCGTCCCTTCATTTCTTGAT 57.714 40.909 0.00 0.00 33.34 2.57
3289 5174 3.623510 GTCGTCCCTTCATTTCTTGATCC 59.376 47.826 0.00 0.00 33.34 3.36
3293 5178 4.772100 GTCCCTTCATTTCTTGATCCCAAA 59.228 41.667 0.00 0.00 33.34 3.28
3297 5182 6.464180 CCCTTCATTTCTTGATCCCAAACAAA 60.464 38.462 0.00 0.00 33.34 2.83
3300 5185 4.335400 TTTCTTGATCCCAAACAAAGCC 57.665 40.909 0.00 0.00 0.00 4.35
3312 5197 2.153366 ACAAAGCCCGAGCAAAATTG 57.847 45.000 0.00 0.00 43.56 2.32
3327 5212 7.857885 CGAGCAAAATTGAGTTTCTCTTTACTT 59.142 33.333 0.00 0.00 0.00 2.24
3347 5232 4.097892 ACTTTAGTTTGTGCTCCCAACTTG 59.902 41.667 5.95 2.04 0.00 3.16
3374 5259 0.321210 TCCGTTCAACGCCATCACAT 60.321 50.000 3.77 0.00 40.91 3.21
3388 5273 4.442612 GCCATCACATACTGATCACTGACT 60.443 45.833 0.00 0.00 37.53 3.41
3391 5276 5.982890 TCACATACTGATCACTGACTTGA 57.017 39.130 0.00 0.00 0.00 3.02
3395 5281 3.674528 ACTGATCACTGACTTGAGTGG 57.325 47.619 0.00 0.00 43.16 4.00
3399 5285 2.533266 TCACTGACTTGAGTGGAAGC 57.467 50.000 0.00 0.00 43.16 3.86
3422 5308 5.391950 GCGAACAACTCACATATTGGATGTT 60.392 40.000 0.00 0.00 0.00 2.71
3452 5338 8.750416 CATAAGAGTTATCTGAACTCAACATCG 58.250 37.037 17.26 0.60 46.78 3.84
3469 5358 2.347490 GCCGCTCTTCCTTGACCA 59.653 61.111 0.00 0.00 0.00 4.02
3484 5373 5.656416 TCCTTGACCATTTGTCTGAAACTTT 59.344 36.000 0.00 0.00 44.75 2.66
3565 5454 0.042581 TATGACCACCAGAGCCCTGA 59.957 55.000 0.00 0.00 43.02 3.86
3640 5529 1.294857 CTCTGCTCTCTCGATCGACA 58.705 55.000 15.15 9.44 0.00 4.35
3697 5586 3.386078 ACTGCAGAGTACCATCGATCATT 59.614 43.478 23.35 0.00 0.00 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 0.608035 TCAAAATGTCCGGGCTGACC 60.608 55.000 7.97 0.00 34.25 4.02
26 27 1.133025 CATCAAAATGTCCGGGCTGAC 59.867 52.381 7.97 0.00 35.77 3.51
27 28 1.462616 CATCAAAATGTCCGGGCTGA 58.537 50.000 7.97 2.13 0.00 4.26
28 29 0.457035 CCATCAAAATGTCCGGGCTG 59.543 55.000 7.97 0.00 0.00 4.85
29 30 1.322538 GCCATCAAAATGTCCGGGCT 61.323 55.000 7.97 0.00 37.00 5.19
30 31 1.141665 GCCATCAAAATGTCCGGGC 59.858 57.895 0.00 0.00 0.00 6.13
31 32 0.457035 CAGCCATCAAAATGTCCGGG 59.543 55.000 0.00 0.00 0.00 5.73
32 33 1.176527 ACAGCCATCAAAATGTCCGG 58.823 50.000 0.00 0.00 0.00 5.14
33 34 2.988493 CAAACAGCCATCAAAATGTCCG 59.012 45.455 0.00 0.00 0.00 4.79
34 35 4.022068 TCTCAAACAGCCATCAAAATGTCC 60.022 41.667 0.00 0.00 0.00 4.02
35 36 5.125100 TCTCAAACAGCCATCAAAATGTC 57.875 39.130 0.00 0.00 0.00 3.06
36 37 4.021719 CCTCTCAAACAGCCATCAAAATGT 60.022 41.667 0.00 0.00 0.00 2.71
37 38 4.491676 CCTCTCAAACAGCCATCAAAATG 58.508 43.478 0.00 0.00 0.00 2.32
38 39 3.056322 GCCTCTCAAACAGCCATCAAAAT 60.056 43.478 0.00 0.00 0.00 1.82
39 40 2.297033 GCCTCTCAAACAGCCATCAAAA 59.703 45.455 0.00 0.00 0.00 2.44
40 41 1.888512 GCCTCTCAAACAGCCATCAAA 59.111 47.619 0.00 0.00 0.00 2.69
41 42 1.538047 GCCTCTCAAACAGCCATCAA 58.462 50.000 0.00 0.00 0.00 2.57
42 43 0.322816 GGCCTCTCAAACAGCCATCA 60.323 55.000 0.00 0.00 45.07 3.07
43 44 2.486796 GGCCTCTCAAACAGCCATC 58.513 57.895 0.00 0.00 45.07 3.51
44 45 4.751431 GGCCTCTCAAACAGCCAT 57.249 55.556 0.00 0.00 45.07 4.40
46 47 2.747855 CGGGCCTCTCAAACAGCC 60.748 66.667 0.84 0.00 44.99 4.85
47 48 2.032681 ACGGGCCTCTCAAACAGC 59.967 61.111 0.84 0.00 0.00 4.40
48 49 0.671781 CAGACGGGCCTCTCAAACAG 60.672 60.000 0.84 0.00 0.00 3.16
49 50 1.371183 CAGACGGGCCTCTCAAACA 59.629 57.895 0.84 0.00 0.00 2.83
50 51 1.376037 CCAGACGGGCCTCTCAAAC 60.376 63.158 0.84 0.00 0.00 2.93
51 52 0.909610 ATCCAGACGGGCCTCTCAAA 60.910 55.000 0.84 0.00 36.21 2.69
52 53 1.306141 ATCCAGACGGGCCTCTCAA 60.306 57.895 0.84 0.00 36.21 3.02
53 54 1.758514 GATCCAGACGGGCCTCTCA 60.759 63.158 0.84 0.00 36.21 3.27
54 55 1.330655 TTGATCCAGACGGGCCTCTC 61.331 60.000 0.84 0.00 36.21 3.20
55 56 0.692419 ATTGATCCAGACGGGCCTCT 60.692 55.000 0.84 0.24 36.21 3.69
56 57 1.048601 TATTGATCCAGACGGGCCTC 58.951 55.000 0.84 0.00 36.21 4.70
57 58 1.507140 TTATTGATCCAGACGGGCCT 58.493 50.000 0.84 0.00 36.21 5.19
58 59 2.341846 TTTATTGATCCAGACGGGCC 57.658 50.000 0.00 0.00 36.21 5.80
59 60 2.480419 CGATTTATTGATCCAGACGGGC 59.520 50.000 0.00 0.00 36.21 6.13
60 61 3.494626 CACGATTTATTGATCCAGACGGG 59.505 47.826 0.00 0.00 38.37 5.28
61 62 4.209288 GTCACGATTTATTGATCCAGACGG 59.791 45.833 0.00 0.00 0.00 4.79
62 63 4.209288 GGTCACGATTTATTGATCCAGACG 59.791 45.833 0.00 0.00 31.94 4.18
63 64 4.209288 CGGTCACGATTTATTGATCCAGAC 59.791 45.833 0.00 0.00 44.60 3.51
64 65 4.368315 CGGTCACGATTTATTGATCCAGA 58.632 43.478 0.00 0.00 44.60 3.86
65 66 3.494626 CCGGTCACGATTTATTGATCCAG 59.505 47.826 0.00 0.00 44.60 3.86
66 67 3.462982 CCGGTCACGATTTATTGATCCA 58.537 45.455 0.00 0.00 44.60 3.41
67 68 2.806244 CCCGGTCACGATTTATTGATCC 59.194 50.000 0.00 0.00 44.60 3.36
68 69 2.223377 GCCCGGTCACGATTTATTGATC 59.777 50.000 0.00 0.00 44.60 2.92
69 70 2.218603 GCCCGGTCACGATTTATTGAT 58.781 47.619 0.00 0.00 44.60 2.57
70 71 1.658994 GCCCGGTCACGATTTATTGA 58.341 50.000 0.00 0.00 44.60 2.57
71 72 0.303493 CGCCCGGTCACGATTTATTG 59.697 55.000 0.00 0.00 44.60 1.90
72 73 0.812412 CCGCCCGGTCACGATTTATT 60.812 55.000 10.03 0.00 44.60 1.40
73 74 1.227438 CCGCCCGGTCACGATTTAT 60.227 57.895 10.03 0.00 44.60 1.40
74 75 2.184836 CCGCCCGGTCACGATTTA 59.815 61.111 10.03 0.00 44.60 1.40
93 94 4.250305 CTTCATACCCCCGGGCGG 62.250 72.222 17.73 20.73 39.32 6.13
94 95 4.929707 GCTTCATACCCCCGGGCG 62.930 72.222 17.73 10.10 39.32 6.13
95 96 4.929707 CGCTTCATACCCCCGGGC 62.930 72.222 17.73 0.00 39.32 6.13
96 97 4.250305 CCGCTTCATACCCCCGGG 62.250 72.222 15.80 15.80 42.03 5.73
97 98 4.250305 CCCGCTTCATACCCCCGG 62.250 72.222 0.00 0.00 38.71 5.73
98 99 2.546114 AAACCCGCTTCATACCCCCG 62.546 60.000 0.00 0.00 0.00 5.73
99 100 1.035385 CAAACCCGCTTCATACCCCC 61.035 60.000 0.00 0.00 0.00 5.40
100 101 0.034863 TCAAACCCGCTTCATACCCC 60.035 55.000 0.00 0.00 0.00 4.95
101 102 1.339727 ACTCAAACCCGCTTCATACCC 60.340 52.381 0.00 0.00 0.00 3.69
102 103 1.737793 CACTCAAACCCGCTTCATACC 59.262 52.381 0.00 0.00 0.00 2.73
103 104 1.737793 CCACTCAAACCCGCTTCATAC 59.262 52.381 0.00 0.00 0.00 2.39
104 105 1.349688 ACCACTCAAACCCGCTTCATA 59.650 47.619 0.00 0.00 0.00 2.15
105 106 0.110486 ACCACTCAAACCCGCTTCAT 59.890 50.000 0.00 0.00 0.00 2.57
106 107 0.106918 AACCACTCAAACCCGCTTCA 60.107 50.000 0.00 0.00 0.00 3.02
107 108 0.591659 GAACCACTCAAACCCGCTTC 59.408 55.000 0.00 0.00 0.00 3.86
108 109 1.164041 CGAACCACTCAAACCCGCTT 61.164 55.000 0.00 0.00 0.00 4.68
109 110 1.597027 CGAACCACTCAAACCCGCT 60.597 57.895 0.00 0.00 0.00 5.52
110 111 2.613506 CCGAACCACTCAAACCCGC 61.614 63.158 0.00 0.00 0.00 6.13
111 112 0.816421 AACCGAACCACTCAAACCCG 60.816 55.000 0.00 0.00 0.00 5.28
112 113 0.666374 CAACCGAACCACTCAAACCC 59.334 55.000 0.00 0.00 0.00 4.11
113 114 1.385528 ACAACCGAACCACTCAAACC 58.614 50.000 0.00 0.00 0.00 3.27
114 115 3.460103 TCTACAACCGAACCACTCAAAC 58.540 45.455 0.00 0.00 0.00 2.93
115 116 3.823281 TCTACAACCGAACCACTCAAA 57.177 42.857 0.00 0.00 0.00 2.69
116 117 3.659786 CATCTACAACCGAACCACTCAA 58.340 45.455 0.00 0.00 0.00 3.02
117 118 2.611971 GCATCTACAACCGAACCACTCA 60.612 50.000 0.00 0.00 0.00 3.41
118 119 2.000447 GCATCTACAACCGAACCACTC 59.000 52.381 0.00 0.00 0.00 3.51
119 120 1.623811 AGCATCTACAACCGAACCACT 59.376 47.619 0.00 0.00 0.00 4.00
120 121 2.000447 GAGCATCTACAACCGAACCAC 59.000 52.381 0.00 0.00 0.00 4.16
121 122 2.380084 GAGCATCTACAACCGAACCA 57.620 50.000 0.00 0.00 0.00 3.67
134 135 1.993370 GTGTCCGTGTGTTAGAGCATC 59.007 52.381 0.00 0.00 0.00 3.91
135 136 1.343142 TGTGTCCGTGTGTTAGAGCAT 59.657 47.619 0.00 0.00 0.00 3.79
136 137 0.747852 TGTGTCCGTGTGTTAGAGCA 59.252 50.000 0.00 0.00 0.00 4.26
137 138 1.137513 GTGTGTCCGTGTGTTAGAGC 58.862 55.000 0.00 0.00 0.00 4.09
138 139 2.124903 GTGTGTGTCCGTGTGTTAGAG 58.875 52.381 0.00 0.00 0.00 2.43
139 140 1.477295 TGTGTGTGTCCGTGTGTTAGA 59.523 47.619 0.00 0.00 0.00 2.10
140 141 1.591158 GTGTGTGTGTCCGTGTGTTAG 59.409 52.381 0.00 0.00 0.00 2.34
141 142 1.642728 GTGTGTGTGTCCGTGTGTTA 58.357 50.000 0.00 0.00 0.00 2.41
142 143 1.022451 GGTGTGTGTGTCCGTGTGTT 61.022 55.000 0.00 0.00 0.00 3.32
143 144 1.448893 GGTGTGTGTGTCCGTGTGT 60.449 57.895 0.00 0.00 0.00 3.72
144 145 2.177580 GGGTGTGTGTGTCCGTGTG 61.178 63.158 0.00 0.00 0.00 3.82
145 146 1.044231 TAGGGTGTGTGTGTCCGTGT 61.044 55.000 0.00 0.00 0.00 4.49
146 147 0.320374 ATAGGGTGTGTGTGTCCGTG 59.680 55.000 0.00 0.00 0.00 4.94
147 148 0.606604 GATAGGGTGTGTGTGTCCGT 59.393 55.000 0.00 0.00 0.00 4.69
148 149 0.895530 AGATAGGGTGTGTGTGTCCG 59.104 55.000 0.00 0.00 0.00 4.79
149 150 3.418684 AAAGATAGGGTGTGTGTGTCC 57.581 47.619 0.00 0.00 0.00 4.02
150 151 5.753921 GCTATAAAGATAGGGTGTGTGTGTC 59.246 44.000 0.00 0.00 36.32 3.67
151 152 5.188948 TGCTATAAAGATAGGGTGTGTGTGT 59.811 40.000 0.00 0.00 36.32 3.72
152 153 5.523916 GTGCTATAAAGATAGGGTGTGTGTG 59.476 44.000 0.00 0.00 36.32 3.82
153 154 5.396436 GGTGCTATAAAGATAGGGTGTGTGT 60.396 44.000 0.00 0.00 36.32 3.72
154 155 5.057149 GGTGCTATAAAGATAGGGTGTGTG 58.943 45.833 0.00 0.00 36.32 3.82
155 156 4.969359 AGGTGCTATAAAGATAGGGTGTGT 59.031 41.667 0.00 0.00 36.32 3.72
156 157 5.552870 AGGTGCTATAAAGATAGGGTGTG 57.447 43.478 0.00 0.00 36.32 3.82
157 158 5.665812 TGAAGGTGCTATAAAGATAGGGTGT 59.334 40.000 0.00 0.00 36.32 4.16
158 159 6.174720 TGAAGGTGCTATAAAGATAGGGTG 57.825 41.667 0.00 0.00 36.32 4.61
159 160 6.615726 TCTTGAAGGTGCTATAAAGATAGGGT 59.384 38.462 0.00 0.00 36.32 4.34
160 161 7.015682 TCTCTTGAAGGTGCTATAAAGATAGGG 59.984 40.741 0.00 0.00 36.32 3.53
161 162 7.957002 TCTCTTGAAGGTGCTATAAAGATAGG 58.043 38.462 0.00 0.00 36.32 2.57
162 163 9.995003 AATCTCTTGAAGGTGCTATAAAGATAG 57.005 33.333 0.00 0.00 38.51 2.08
163 164 9.770097 CAATCTCTTGAAGGTGCTATAAAGATA 57.230 33.333 0.00 0.00 34.04 1.98
164 165 8.489489 TCAATCTCTTGAAGGTGCTATAAAGAT 58.511 33.333 0.00 0.00 38.43 2.40
165 166 7.851228 TCAATCTCTTGAAGGTGCTATAAAGA 58.149 34.615 0.00 0.00 38.43 2.52
166 167 7.254727 GCTCAATCTCTTGAAGGTGCTATAAAG 60.255 40.741 0.00 0.00 40.78 1.85
167 168 6.540189 GCTCAATCTCTTGAAGGTGCTATAAA 59.460 38.462 0.00 0.00 40.78 1.40
168 169 6.051717 GCTCAATCTCTTGAAGGTGCTATAA 58.948 40.000 0.00 0.00 40.78 0.98
169 170 5.129320 TGCTCAATCTCTTGAAGGTGCTATA 59.871 40.000 0.00 0.00 40.78 1.31
170 171 4.080695 TGCTCAATCTCTTGAAGGTGCTAT 60.081 41.667 0.00 0.00 40.78 2.97
171 172 3.261643 TGCTCAATCTCTTGAAGGTGCTA 59.738 43.478 0.00 0.00 40.78 3.49
172 173 2.039480 TGCTCAATCTCTTGAAGGTGCT 59.961 45.455 0.00 0.00 40.78 4.40
173 174 2.419324 CTGCTCAATCTCTTGAAGGTGC 59.581 50.000 0.00 0.00 40.78 5.01
174 175 3.683822 GTCTGCTCAATCTCTTGAAGGTG 59.316 47.826 0.00 0.00 40.78 4.00
175 176 3.326006 TGTCTGCTCAATCTCTTGAAGGT 59.674 43.478 0.00 0.00 40.78 3.50
176 177 3.683822 GTGTCTGCTCAATCTCTTGAAGG 59.316 47.826 0.00 0.00 40.78 3.46
177 178 4.313282 TGTGTCTGCTCAATCTCTTGAAG 58.687 43.478 0.00 0.00 40.78 3.02
178 179 4.341366 TGTGTCTGCTCAATCTCTTGAA 57.659 40.909 0.00 0.00 40.78 2.69
179 180 4.020839 TGATGTGTCTGCTCAATCTCTTGA 60.021 41.667 0.00 0.00 39.07 3.02
180 181 4.251268 TGATGTGTCTGCTCAATCTCTTG 58.749 43.478 0.00 0.00 0.00 3.02
181 182 4.548451 TGATGTGTCTGCTCAATCTCTT 57.452 40.909 0.00 0.00 0.00 2.85
182 183 4.406326 AGATGATGTGTCTGCTCAATCTCT 59.594 41.667 0.00 0.00 0.00 3.10
183 184 4.695396 AGATGATGTGTCTGCTCAATCTC 58.305 43.478 0.00 0.00 0.00 2.75
184 185 4.757019 AGATGATGTGTCTGCTCAATCT 57.243 40.909 0.00 0.00 0.00 2.40
185 186 6.760298 TCTTAAGATGATGTGTCTGCTCAATC 59.240 38.462 0.00 0.00 0.00 2.67
186 187 6.647229 TCTTAAGATGATGTGTCTGCTCAAT 58.353 36.000 0.00 0.00 0.00 2.57
187 188 6.041423 TCTTAAGATGATGTGTCTGCTCAA 57.959 37.500 0.00 0.00 0.00 3.02
188 189 5.665916 TCTTAAGATGATGTGTCTGCTCA 57.334 39.130 0.00 0.00 0.00 4.26
189 190 6.514947 AGATCTTAAGATGATGTGTCTGCTC 58.485 40.000 22.61 4.39 34.37 4.26
190 191 6.482898 AGATCTTAAGATGATGTGTCTGCT 57.517 37.500 22.61 6.45 34.37 4.24
191 192 7.205992 TGTAGATCTTAAGATGATGTGTCTGC 58.794 38.462 22.61 15.01 34.37 4.26
192 193 9.591792 TTTGTAGATCTTAAGATGATGTGTCTG 57.408 33.333 22.61 0.00 34.37 3.51
193 194 9.814899 CTTTGTAGATCTTAAGATGATGTGTCT 57.185 33.333 22.61 14.02 34.37 3.41
194 195 9.593134 ACTTTGTAGATCTTAAGATGATGTGTC 57.407 33.333 22.61 7.26 34.37 3.67
195 196 9.593134 GACTTTGTAGATCTTAAGATGATGTGT 57.407 33.333 22.61 11.52 34.37 3.72
196 197 8.750416 CGACTTTGTAGATCTTAAGATGATGTG 58.250 37.037 22.61 8.78 34.37 3.21
197 198 7.436673 GCGACTTTGTAGATCTTAAGATGATGT 59.563 37.037 22.61 10.60 34.37 3.06
198 199 7.095857 GGCGACTTTGTAGATCTTAAGATGATG 60.096 40.741 22.61 7.86 34.37 3.07
199 200 6.926272 GGCGACTTTGTAGATCTTAAGATGAT 59.074 38.462 22.61 12.88 34.37 2.45
200 201 6.127451 TGGCGACTTTGTAGATCTTAAGATGA 60.127 38.462 22.61 7.57 34.37 2.92
201 202 6.042777 TGGCGACTTTGTAGATCTTAAGATG 58.957 40.000 22.61 8.70 34.37 2.90
202 203 6.222038 TGGCGACTTTGTAGATCTTAAGAT 57.778 37.500 17.96 17.96 37.51 2.40
203 204 5.654603 TGGCGACTTTGTAGATCTTAAGA 57.345 39.130 7.82 7.82 0.00 2.10
204 205 7.380065 GTCTATGGCGACTTTGTAGATCTTAAG 59.620 40.741 0.00 5.52 0.00 1.85
205 206 7.201145 GTCTATGGCGACTTTGTAGATCTTAA 58.799 38.462 0.00 0.00 0.00 1.85
206 207 6.512903 CGTCTATGGCGACTTTGTAGATCTTA 60.513 42.308 0.00 0.00 0.00 2.10
207 208 5.593010 GTCTATGGCGACTTTGTAGATCTT 58.407 41.667 0.00 0.00 0.00 2.40
208 209 4.261238 CGTCTATGGCGACTTTGTAGATCT 60.261 45.833 0.00 0.00 0.00 2.75
209 210 3.975670 CGTCTATGGCGACTTTGTAGATC 59.024 47.826 0.00 0.00 0.00 2.75
210 211 3.795826 GCGTCTATGGCGACTTTGTAGAT 60.796 47.826 0.00 0.00 0.00 1.98
211 212 2.479049 GCGTCTATGGCGACTTTGTAGA 60.479 50.000 0.00 0.00 0.00 2.59
212 213 1.852895 GCGTCTATGGCGACTTTGTAG 59.147 52.381 0.00 0.00 0.00 2.74
213 214 1.475280 AGCGTCTATGGCGACTTTGTA 59.525 47.619 0.00 0.00 35.00 2.41
214 215 0.246635 AGCGTCTATGGCGACTTTGT 59.753 50.000 0.00 0.00 35.00 2.83
215 216 1.359848 AAGCGTCTATGGCGACTTTG 58.640 50.000 0.00 0.00 35.00 2.77
216 217 2.000447 GAAAGCGTCTATGGCGACTTT 59.000 47.619 11.36 11.36 37.89 2.66
217 218 1.067142 TGAAAGCGTCTATGGCGACTT 60.067 47.619 0.00 0.00 35.00 3.01
218 219 0.530744 TGAAAGCGTCTATGGCGACT 59.469 50.000 0.00 0.00 35.00 4.18
219 220 1.571919 ATGAAAGCGTCTATGGCGAC 58.428 50.000 0.00 0.00 35.00 5.19
220 221 2.862530 GCTATGAAAGCGTCTATGGCGA 60.863 50.000 0.00 0.00 42.53 5.54
221 222 1.457303 GCTATGAAAGCGTCTATGGCG 59.543 52.381 0.00 0.00 42.53 5.69
231 232 1.265365 GCTTCCATCGGCTATGAAAGC 59.735 52.381 7.19 7.19 46.83 3.51
232 233 1.528586 CGCTTCCATCGGCTATGAAAG 59.471 52.381 0.00 0.00 37.86 2.62
233 234 1.134521 ACGCTTCCATCGGCTATGAAA 60.135 47.619 0.00 0.00 37.86 2.69
234 235 0.464036 ACGCTTCCATCGGCTATGAA 59.536 50.000 0.00 0.00 37.86 2.57
235 236 0.032130 GACGCTTCCATCGGCTATGA 59.968 55.000 0.00 0.00 37.86 2.15
236 237 0.032678 AGACGCTTCCATCGGCTATG 59.967 55.000 0.00 0.00 44.53 2.23
237 238 0.315568 GAGACGCTTCCATCGGCTAT 59.684 55.000 0.00 0.00 46.62 2.97
238 239 1.734137 GAGACGCTTCCATCGGCTA 59.266 57.895 0.00 0.00 46.62 3.93
240 241 2.586357 GGAGACGCTTCCATCGGC 60.586 66.667 1.14 0.00 37.20 5.54
241 242 1.066587 GAGGAGACGCTTCCATCGG 59.933 63.158 8.35 0.00 39.84 4.18
242 243 2.111162 AGAGGAGACGCTTCCATCG 58.889 57.895 8.35 0.00 37.03 3.84
249 250 2.676463 GCATTCAGAAAGAGGAGACGCT 60.676 50.000 0.00 0.00 45.01 5.07
250 251 1.663135 GCATTCAGAAAGAGGAGACGC 59.337 52.381 0.00 0.00 0.00 5.19
251 252 2.670414 GTGCATTCAGAAAGAGGAGACG 59.330 50.000 0.00 0.00 0.00 4.18
252 253 3.668447 TGTGCATTCAGAAAGAGGAGAC 58.332 45.455 0.00 0.00 0.00 3.36
253 254 4.564782 ATGTGCATTCAGAAAGAGGAGA 57.435 40.909 0.00 0.00 0.00 3.71
254 255 5.879223 AGTAATGTGCATTCAGAAAGAGGAG 59.121 40.000 0.18 0.00 32.50 3.69
255 256 5.645067 CAGTAATGTGCATTCAGAAAGAGGA 59.355 40.000 0.18 0.00 32.50 3.71
256 257 5.163683 CCAGTAATGTGCATTCAGAAAGAGG 60.164 44.000 0.18 0.00 32.50 3.69
257 258 5.645067 TCCAGTAATGTGCATTCAGAAAGAG 59.355 40.000 0.18 0.00 32.50 2.85
258 259 5.559770 TCCAGTAATGTGCATTCAGAAAGA 58.440 37.500 0.18 0.00 32.50 2.52
259 260 5.885230 TCCAGTAATGTGCATTCAGAAAG 57.115 39.130 0.18 0.00 32.50 2.62
260 261 6.038603 GCTATCCAGTAATGTGCATTCAGAAA 59.961 38.462 0.18 0.00 32.50 2.52
261 262 5.528690 GCTATCCAGTAATGTGCATTCAGAA 59.471 40.000 0.18 0.00 32.50 3.02
262 263 5.059161 GCTATCCAGTAATGTGCATTCAGA 58.941 41.667 0.18 0.00 32.50 3.27
263 264 4.214971 GGCTATCCAGTAATGTGCATTCAG 59.785 45.833 0.18 0.00 32.50 3.02
264 265 4.136796 GGCTATCCAGTAATGTGCATTCA 58.863 43.478 0.18 0.00 32.50 2.57
265 266 4.214971 CAGGCTATCCAGTAATGTGCATTC 59.785 45.833 0.18 0.00 33.74 2.67
266 267 4.139786 CAGGCTATCCAGTAATGTGCATT 58.860 43.478 0.00 2.83 33.74 3.56
267 268 3.137176 ACAGGCTATCCAGTAATGTGCAT 59.863 43.478 0.00 0.00 29.47 3.96
268 269 2.505407 ACAGGCTATCCAGTAATGTGCA 59.495 45.455 0.00 0.00 29.47 4.57
269 270 3.199880 ACAGGCTATCCAGTAATGTGC 57.800 47.619 0.00 0.00 29.47 4.57
270 271 7.624360 TTTTAACAGGCTATCCAGTAATGTG 57.376 36.000 0.00 0.00 31.23 3.21
271 272 9.914834 TTATTTTAACAGGCTATCCAGTAATGT 57.085 29.630 0.00 0.00 31.23 2.71
276 277 9.474313 TGATTTTATTTTAACAGGCTATCCAGT 57.526 29.630 0.00 0.00 33.01 4.00
304 305 8.936864 GCTAATAGATATGGTGCTCGTATTTTT 58.063 33.333 0.00 0.00 0.00 1.94
305 306 8.094548 TGCTAATAGATATGGTGCTCGTATTTT 58.905 33.333 0.00 0.00 0.00 1.82
306 307 7.611770 TGCTAATAGATATGGTGCTCGTATTT 58.388 34.615 0.00 0.00 0.00 1.40
307 308 7.170393 TGCTAATAGATATGGTGCTCGTATT 57.830 36.000 0.00 0.00 0.00 1.89
308 309 6.775594 TGCTAATAGATATGGTGCTCGTAT 57.224 37.500 0.00 0.00 0.00 3.06
309 310 6.377146 TCATGCTAATAGATATGGTGCTCGTA 59.623 38.462 0.00 0.00 0.00 3.43
310 311 5.185828 TCATGCTAATAGATATGGTGCTCGT 59.814 40.000 0.00 0.00 0.00 4.18
311 312 5.654497 TCATGCTAATAGATATGGTGCTCG 58.346 41.667 0.00 0.00 0.00 5.03
312 313 5.523188 GCTCATGCTAATAGATATGGTGCTC 59.477 44.000 0.00 0.00 36.03 4.26
313 314 5.426504 GCTCATGCTAATAGATATGGTGCT 58.573 41.667 0.00 0.00 36.03 4.40
314 315 4.574013 GGCTCATGCTAATAGATATGGTGC 59.426 45.833 0.00 4.10 39.59 5.01
315 316 5.987098 AGGCTCATGCTAATAGATATGGTG 58.013 41.667 0.00 0.00 39.59 4.17
316 317 6.326064 CCTAGGCTCATGCTAATAGATATGGT 59.674 42.308 0.00 0.00 39.59 3.55
317 318 6.740960 GCCTAGGCTCATGCTAATAGATATGG 60.741 46.154 27.17 0.00 39.59 2.74
318 319 6.183360 TGCCTAGGCTCATGCTAATAGATATG 60.183 42.308 33.07 0.00 42.51 1.78
319 320 5.901853 TGCCTAGGCTCATGCTAATAGATAT 59.098 40.000 33.07 0.00 42.51 1.63
320 321 5.127845 GTGCCTAGGCTCATGCTAATAGATA 59.872 44.000 33.07 5.21 42.51 1.98
321 322 4.081198 GTGCCTAGGCTCATGCTAATAGAT 60.081 45.833 33.07 0.00 42.51 1.98
331 332 1.768077 GGAGGGTGCCTAGGCTCAT 60.768 63.158 33.07 22.51 42.51 2.90
332 333 2.365635 GGAGGGTGCCTAGGCTCA 60.366 66.667 33.07 12.84 42.51 4.26
350 351 3.927555 CTTTAGAAGCCGGTGGTGA 57.072 52.632 1.90 0.00 0.00 4.02
361 362 4.504858 GATTCACCTCTTCGGCTTTAGAA 58.495 43.478 0.00 0.00 35.61 2.10
364 365 2.569853 TGGATTCACCTCTTCGGCTTTA 59.430 45.455 0.00 0.00 39.86 1.85
365 366 1.351017 TGGATTCACCTCTTCGGCTTT 59.649 47.619 0.00 0.00 39.86 3.51
369 370 0.460284 CCGTGGATTCACCTCTTCGG 60.460 60.000 0.00 0.00 40.65 4.30
370 371 0.460284 CCCGTGGATTCACCTCTTCG 60.460 60.000 0.00 0.00 40.65 3.79
372 382 1.201429 AGCCCGTGGATTCACCTCTT 61.201 55.000 0.00 0.00 40.65 2.85
374 384 0.539986 TAAGCCCGTGGATTCACCTC 59.460 55.000 0.00 0.00 40.65 3.85
396 406 4.816984 TCCTCCTCGGTCTCGGCC 62.817 72.222 0.00 0.00 36.95 6.13
400 410 3.810386 GCAAAATATTCCTCCTCGGTCTC 59.190 47.826 0.00 0.00 0.00 3.36
404 414 2.158608 AGGGCAAAATATTCCTCCTCGG 60.159 50.000 0.00 0.00 0.00 4.63
406 416 5.163195 TGAGTAGGGCAAAATATTCCTCCTC 60.163 44.000 6.58 6.58 34.30 3.71
421 432 1.153745 CTCGCAGTGTGAGTAGGGC 60.154 63.158 22.98 0.00 35.69 5.19
423 434 1.400142 CTCTCTCGCAGTGTGAGTAGG 59.600 57.143 28.22 20.01 40.59 3.18
424 435 1.400142 CCTCTCTCGCAGTGTGAGTAG 59.600 57.143 28.22 24.50 40.59 2.57
425 436 1.003233 TCCTCTCTCGCAGTGTGAGTA 59.997 52.381 28.22 18.44 40.59 2.59
426 437 0.250945 TCCTCTCTCGCAGTGTGAGT 60.251 55.000 28.22 0.00 40.59 3.41
427 438 0.884514 TTCCTCTCTCGCAGTGTGAG 59.115 55.000 24.85 24.85 41.03 3.51
428 439 1.270826 CTTTCCTCTCTCGCAGTGTGA 59.729 52.381 6.17 6.17 0.00 3.58
429 440 1.270826 TCTTTCCTCTCTCGCAGTGTG 59.729 52.381 0.00 0.00 0.00 3.82
431 442 2.732412 TTCTTTCCTCTCTCGCAGTG 57.268 50.000 0.00 0.00 0.00 3.66
432 443 3.070302 ACTTTTCTTTCCTCTCTCGCAGT 59.930 43.478 0.00 0.00 0.00 4.40
433 444 3.658709 ACTTTTCTTTCCTCTCTCGCAG 58.341 45.455 0.00 0.00 0.00 5.18
434 445 3.753294 ACTTTTCTTTCCTCTCTCGCA 57.247 42.857 0.00 0.00 0.00 5.10
435 446 4.376514 CGAAACTTTTCTTTCCTCTCTCGC 60.377 45.833 0.47 0.00 35.07 5.03
436 447 4.150804 CCGAAACTTTTCTTTCCTCTCTCG 59.849 45.833 0.47 0.00 35.07 4.04
437 448 5.050023 CACCGAAACTTTTCTTTCCTCTCTC 60.050 44.000 0.47 0.00 35.07 3.20
453 464 0.250338 AAGTCTCTGCCCACCGAAAC 60.250 55.000 0.00 0.00 0.00 2.78
454 465 1.344065 TAAGTCTCTGCCCACCGAAA 58.656 50.000 0.00 0.00 0.00 3.46
498 510 8.679100 ACCATGCTGCTTTTACGTAATTATTAA 58.321 29.630 9.18 0.00 0.00 1.40
556 568 1.308069 TGAGAGCCGCTTGGAATTGC 61.308 55.000 0.00 0.00 33.02 3.56
571 583 2.101750 TCAAAGTAAGCGTGGTGTGAGA 59.898 45.455 0.00 0.00 0.00 3.27
616 631 4.646492 AGTTTTCTGCAGACAAGGACAAAT 59.354 37.500 18.03 0.73 0.00 2.32
619 634 3.281727 AGTTTTCTGCAGACAAGGACA 57.718 42.857 18.03 0.00 0.00 4.02
622 637 4.999950 AGTGATAGTTTTCTGCAGACAAGG 59.000 41.667 18.03 0.00 0.00 3.61
642 657 4.790140 GCGCAATCTGAAAATAGTGAAGTG 59.210 41.667 0.30 0.00 0.00 3.16
649 667 5.227238 ACTCTTGCGCAATCTGAAAATAG 57.773 39.130 25.26 7.74 0.00 1.73
696 720 4.801221 CGCTTCTTTGCTCGCCGC 62.801 66.667 0.00 0.00 39.77 6.53
701 725 1.128321 CTTGCTCTCGCTTCTTTGCTC 59.872 52.381 0.00 0.00 36.97 4.26
713 737 4.869861 GTCTCTGGATCTTTTCTTGCTCTC 59.130 45.833 0.00 0.00 0.00 3.20
718 742 4.081972 TCTCCGTCTCTGGATCTTTTCTTG 60.082 45.833 0.00 0.00 37.41 3.02
738 762 8.478877 TGGTAGAAATATCTTCCTTTCACTCTC 58.521 37.037 3.64 0.00 42.14 3.20
759 783 6.881065 TGAGAAAAATCTTCTCCACATGGTAG 59.119 38.462 11.04 0.00 43.14 3.18
763 787 6.152323 ACCATGAGAAAAATCTTCTCCACATG 59.848 38.462 11.04 8.94 43.14 3.21
802 829 1.063341 TCAGAGGATCAGAGACCCTGG 60.063 57.143 0.00 0.00 43.12 4.45
815 842 6.461509 GGACAAAAAGCAAAAAGATCAGAGGA 60.462 38.462 0.00 0.00 0.00 3.71
818 845 5.128499 TGGGACAAAAAGCAAAAAGATCAGA 59.872 36.000 0.00 0.00 31.92 3.27
819 846 5.358922 TGGGACAAAAAGCAAAAAGATCAG 58.641 37.500 0.00 0.00 31.92 2.90
990 2785 0.466555 AAGATCGGCTAGCTCCTCGT 60.467 55.000 15.72 4.31 0.00 4.18
995 2790 3.120041 GAGTTCAAAGATCGGCTAGCTC 58.880 50.000 15.72 4.36 0.00 4.09
1068 2870 1.815613 CGTGCCTCCGATGATATCTCT 59.184 52.381 3.98 0.00 0.00 3.10
1069 2871 1.734047 GCGTGCCTCCGATGATATCTC 60.734 57.143 3.98 0.00 0.00 2.75
1204 3016 4.189188 CGGACGACGGCGGAGAAT 62.189 66.667 18.49 0.00 43.17 2.40
1291 3107 1.479709 ACAGTGGAGATAGCTCGCTT 58.520 50.000 1.16 0.00 42.25 4.68
1292 3108 1.407258 GAACAGTGGAGATAGCTCGCT 59.593 52.381 1.16 0.00 42.25 4.93
1293 3109 1.407258 AGAACAGTGGAGATAGCTCGC 59.593 52.381 1.16 0.00 42.25 5.03
1294 3110 2.797792 GCAGAACAGTGGAGATAGCTCG 60.798 54.545 1.16 0.00 42.25 5.03
1295 3111 2.797792 CGCAGAACAGTGGAGATAGCTC 60.798 54.545 0.00 0.00 40.54 4.09
1346 3162 3.547868 CCACGAGTCGATTAATCACACAG 59.452 47.826 21.50 10.82 0.00 3.66
1356 3172 1.214589 CCGGTTCCACGAGTCGATT 59.785 57.895 21.50 0.00 35.47 3.34
1357 3173 1.246056 TTCCGGTTCCACGAGTCGAT 61.246 55.000 21.50 0.03 35.47 3.59
1358 3174 1.246056 ATTCCGGTTCCACGAGTCGA 61.246 55.000 21.50 0.00 35.47 4.20
1359 3175 0.389426 AATTCCGGTTCCACGAGTCG 60.389 55.000 11.85 11.85 35.47 4.18
1538 3360 8.967218 CACACACACACAAAATTAAAGATAAGG 58.033 33.333 0.00 0.00 0.00 2.69
1563 3385 2.930019 CCCTCTCCCTGCCACACA 60.930 66.667 0.00 0.00 0.00 3.72
1564 3386 4.416738 GCCCTCTCCCTGCCACAC 62.417 72.222 0.00 0.00 0.00 3.82
1740 3575 2.682952 CGGTCAGCTAGTACATACCG 57.317 55.000 0.00 0.00 43.20 4.02
2017 3865 2.046604 GTGTAAGCCCCGTCCCAC 60.047 66.667 0.00 0.00 0.00 4.61
2029 3877 3.181448 GGACCTTGAACTTGAGGGTGTAA 60.181 47.826 0.00 0.00 37.36 2.41
2097 3945 7.181143 TGGAGTGTTTGAGAAACGTAATTAC 57.819 36.000 5.47 5.47 44.28 1.89
2136 3984 3.893326 ATGGCTAAGGCATTTTGAACC 57.107 42.857 1.13 0.00 46.61 3.62
2168 4019 2.203437 AACACGGAAAGCCCCACC 60.203 61.111 0.00 0.00 0.00 4.61
2199 4055 4.904895 AGGTTCTTAGTTCTTACCCACC 57.095 45.455 0.00 0.00 0.00 4.61
2219 4076 1.735360 CTGCACCAACACCACCAAG 59.265 57.895 0.00 0.00 0.00 3.61
2297 4154 2.095567 GCAGCTTGTGATGACGATGTTT 60.096 45.455 0.00 0.00 0.00 2.83
2327 4184 0.395862 CTCCCTCCTCGTAGAAGCCA 60.396 60.000 0.00 0.00 34.09 4.75
2466 4323 1.302431 CATGCCGTCTTGGTGGTGA 60.302 57.895 0.00 0.00 41.21 4.02
2480 4337 1.459975 CATATCGTCTGCTGCTCATGC 59.540 52.381 0.00 0.00 40.20 4.06
2493 4350 6.228995 TCCTCGTCTTATGAGTACATATCGT 58.771 40.000 0.00 0.00 38.55 3.73
2494 4351 6.590677 TCTCCTCGTCTTATGAGTACATATCG 59.409 42.308 0.00 0.00 38.55 2.92
2495 4352 7.065324 CCTCTCCTCGTCTTATGAGTACATATC 59.935 44.444 0.00 0.00 38.55 1.63
2563 4426 9.675464 CCATTCCCTTTTTACAAGTATACAGTA 57.325 33.333 5.50 4.98 0.00 2.74
2564 4427 8.168058 ACCATTCCCTTTTTACAAGTATACAGT 58.832 33.333 5.50 5.97 0.00 3.55
2565 4428 8.575649 ACCATTCCCTTTTTACAAGTATACAG 57.424 34.615 5.50 0.00 0.00 2.74
2566 4429 8.798402 CAACCATTCCCTTTTTACAAGTATACA 58.202 33.333 5.50 0.00 0.00 2.29
2567 4430 8.799367 ACAACCATTCCCTTTTTACAAGTATAC 58.201 33.333 0.00 0.00 0.00 1.47
2608 4471 2.420022 AGTGCGCATTGTACAATCCTTC 59.580 45.455 18.25 8.52 35.35 3.46
2610 4473 2.113860 AGTGCGCATTGTACAATCCT 57.886 45.000 18.25 0.00 35.35 3.24
2611 4474 2.287915 CCTAGTGCGCATTGTACAATCC 59.712 50.000 18.25 8.88 35.35 3.01
2612 4475 2.936498 ACCTAGTGCGCATTGTACAATC 59.064 45.455 18.25 11.91 35.35 2.67
2613 4476 2.677836 CACCTAGTGCGCATTGTACAAT 59.322 45.455 15.91 15.47 35.35 2.71
2614 4477 2.073056 CACCTAGTGCGCATTGTACAA 58.927 47.619 15.91 11.41 35.35 2.41
2615 4478 1.674519 CCACCTAGTGCGCATTGTACA 60.675 52.381 15.91 0.00 35.35 2.90
2616 4479 1.006832 CCACCTAGTGCGCATTGTAC 58.993 55.000 15.91 0.00 31.34 2.90
2617 4480 0.899019 TCCACCTAGTGCGCATTGTA 59.101 50.000 15.91 5.06 31.34 2.41
2657 4525 1.818850 GCACATGTCATGCGTTCATC 58.181 50.000 12.91 0.00 32.45 2.92
2686 4554 7.416154 TCTACATTTGTTTCGGTTTACTGAG 57.584 36.000 0.00 0.00 32.05 3.35
2689 4557 7.972832 TCATCTACATTTGTTTCGGTTTACT 57.027 32.000 0.00 0.00 0.00 2.24
2690 4558 7.267600 CGTTCATCTACATTTGTTTCGGTTTAC 59.732 37.037 0.00 0.00 0.00 2.01
2692 4560 6.140110 CGTTCATCTACATTTGTTTCGGTTT 58.860 36.000 0.00 0.00 0.00 3.27
2693 4561 5.334569 CCGTTCATCTACATTTGTTTCGGTT 60.335 40.000 0.00 0.00 0.00 4.44
2694 4562 4.153475 CCGTTCATCTACATTTGTTTCGGT 59.847 41.667 0.00 0.00 0.00 4.69
2695 4563 4.390603 TCCGTTCATCTACATTTGTTTCGG 59.609 41.667 0.00 0.00 35.35 4.30
2696 4564 5.524511 TCCGTTCATCTACATTTGTTTCG 57.475 39.130 0.00 0.00 0.00 3.46
2715 4583 1.792006 ACAGGTACGCTTCTTTTCCG 58.208 50.000 0.00 0.00 0.00 4.30
2722 4590 2.938869 ACTACGAAACAGGTACGCTTC 58.061 47.619 0.00 0.00 0.00 3.86
2723 4591 4.479619 CTTACTACGAAACAGGTACGCTT 58.520 43.478 0.00 0.00 0.00 4.68
2737 4608 1.202222 CCTGCACCGTACCTTACTACG 60.202 57.143 0.00 0.00 39.41 3.51
2738 4609 1.470458 GCCTGCACCGTACCTTACTAC 60.470 57.143 0.00 0.00 0.00 2.73
2739 4610 0.819582 GCCTGCACCGTACCTTACTA 59.180 55.000 0.00 0.00 0.00 1.82
2740 4611 1.189524 TGCCTGCACCGTACCTTACT 61.190 55.000 0.00 0.00 0.00 2.24
2741 4612 0.107848 ATGCCTGCACCGTACCTTAC 60.108 55.000 0.00 0.00 0.00 2.34
2742 4613 0.107897 CATGCCTGCACCGTACCTTA 60.108 55.000 0.00 0.00 0.00 2.69
2743 4614 1.377202 CATGCCTGCACCGTACCTT 60.377 57.895 0.00 0.00 0.00 3.50
2744 4615 2.268920 CATGCCTGCACCGTACCT 59.731 61.111 0.00 0.00 0.00 3.08
2745 4616 2.824041 CCATGCCTGCACCGTACC 60.824 66.667 0.00 0.00 0.00 3.34
2755 4626 4.829492 GGATTTATTCTAACAGCCATGCCT 59.171 41.667 0.00 0.00 0.00 4.75
2764 4635 5.508489 CGGTAGCCTCGGATTTATTCTAACA 60.508 44.000 0.00 0.00 0.00 2.41
2765 4636 4.922103 CGGTAGCCTCGGATTTATTCTAAC 59.078 45.833 0.00 0.00 0.00 2.34
2766 4637 4.828939 TCGGTAGCCTCGGATTTATTCTAA 59.171 41.667 0.00 0.00 0.00 2.10
2767 4638 4.401022 TCGGTAGCCTCGGATTTATTCTA 58.599 43.478 0.00 0.00 0.00 2.10
2768 4639 3.228453 TCGGTAGCCTCGGATTTATTCT 58.772 45.455 0.00 0.00 0.00 2.40
2769 4640 3.576648 CTCGGTAGCCTCGGATTTATTC 58.423 50.000 0.00 0.00 0.00 1.75
2770 4641 2.299297 CCTCGGTAGCCTCGGATTTATT 59.701 50.000 0.00 0.00 0.00 1.40
2771 4642 1.893801 CCTCGGTAGCCTCGGATTTAT 59.106 52.381 0.00 0.00 0.00 1.40
2772 4643 1.133699 TCCTCGGTAGCCTCGGATTTA 60.134 52.381 0.00 0.00 0.00 1.40
2773 4644 0.396695 TCCTCGGTAGCCTCGGATTT 60.397 55.000 0.00 0.00 0.00 2.17
2774 4645 1.108132 GTCCTCGGTAGCCTCGGATT 61.108 60.000 0.00 0.00 0.00 3.01
2775 4646 1.528776 GTCCTCGGTAGCCTCGGAT 60.529 63.158 0.00 0.00 0.00 4.18
2776 4647 2.124403 GTCCTCGGTAGCCTCGGA 60.124 66.667 0.00 0.00 0.00 4.55
2777 4648 3.217743 GGTCCTCGGTAGCCTCGG 61.218 72.222 0.00 0.00 0.00 4.63
2778 4649 1.601419 TTTGGTCCTCGGTAGCCTCG 61.601 60.000 0.00 0.00 0.00 4.63
2779 4650 0.108281 GTTTGGTCCTCGGTAGCCTC 60.108 60.000 0.00 0.00 0.00 4.70
2780 4651 0.834687 TGTTTGGTCCTCGGTAGCCT 60.835 55.000 0.00 0.00 0.00 4.58
2781 4652 0.035739 TTGTTTGGTCCTCGGTAGCC 59.964 55.000 0.00 0.00 0.00 3.93
2782 4653 2.007608 GATTGTTTGGTCCTCGGTAGC 58.992 52.381 0.00 0.00 0.00 3.58
2783 4654 3.000727 GTGATTGTTTGGTCCTCGGTAG 58.999 50.000 0.00 0.00 0.00 3.18
2784 4655 2.369203 TGTGATTGTTTGGTCCTCGGTA 59.631 45.455 0.00 0.00 0.00 4.02
2785 4656 1.142060 TGTGATTGTTTGGTCCTCGGT 59.858 47.619 0.00 0.00 0.00 4.69
2797 4668 2.158841 GTGCCGTATTTCGTGTGATTGT 59.841 45.455 0.00 0.00 37.94 2.71
2809 4680 7.598278 TCATTAACAAATTTCAGTGCCGTATT 58.402 30.769 0.00 0.00 0.00 1.89
2810 4681 7.151999 TCATTAACAAATTTCAGTGCCGTAT 57.848 32.000 0.00 0.00 0.00 3.06
2811 4682 6.561737 TCATTAACAAATTTCAGTGCCGTA 57.438 33.333 0.00 0.00 0.00 4.02
2815 4686 8.351495 TGAACTTCATTAACAAATTTCAGTGC 57.649 30.769 0.00 0.00 0.00 4.40
2832 4703 6.712095 GGATGTAGCCATATTGATGAACTTCA 59.288 38.462 0.00 0.00 34.73 3.02
2835 4706 5.564550 GGGATGTAGCCATATTGATGAACT 58.435 41.667 0.00 0.00 34.73 3.01
2841 4712 1.003118 GCCGGGATGTAGCCATATTGA 59.997 52.381 2.18 0.00 0.00 2.57
2843 4714 0.328258 GGCCGGGATGTAGCCATATT 59.672 55.000 2.18 0.00 46.34 1.28
2989 4867 5.103430 GGCTCTCATATATAGAGGGGGTAGT 60.103 48.000 13.46 0.00 40.73 2.73
3028 4907 7.450124 GGATATGAAGTCGTGTCCTAATAGA 57.550 40.000 8.61 0.00 39.29 1.98
3114 4993 4.440112 CCAAAGTGGAGTTTGTTGGAGTTC 60.440 45.833 6.27 0.00 40.96 3.01
3133 5012 5.134339 AGGGTGATGGAGAATATTAGCCAAA 59.866 40.000 11.53 3.00 35.02 3.28
3170 5050 5.529430 TCCAATGTACATGAAAGTTTGACGT 59.471 36.000 9.63 0.00 0.00 4.34
3202 5083 1.276421 GCAGCGGTACTCATGGGATAT 59.724 52.381 0.00 0.00 0.00 1.63
3232 5113 1.414181 CAGGTGGAGTCACACAGAGTT 59.586 52.381 12.09 0.00 45.32 3.01
3238 5119 0.886490 CCTTGCAGGTGGAGTCACAC 60.886 60.000 0.00 0.00 45.32 3.82
3253 5134 0.040958 GACGACAAGTTGCAGCCTTG 60.041 55.000 20.50 20.50 43.87 3.61
3254 5135 1.166531 GGACGACAAGTTGCAGCCTT 61.167 55.000 1.81 0.00 0.00 4.35
3255 5136 1.598130 GGACGACAAGTTGCAGCCT 60.598 57.895 1.81 0.00 0.00 4.58
3256 5137 2.617274 GGGACGACAAGTTGCAGCC 61.617 63.158 1.81 0.00 0.00 4.85
3257 5138 1.166531 AAGGGACGACAAGTTGCAGC 61.167 55.000 1.81 0.00 0.00 5.25
3258 5139 0.868406 GAAGGGACGACAAGTTGCAG 59.132 55.000 1.81 0.00 0.00 4.41
3269 5154 2.945668 GGGATCAAGAAATGAAGGGACG 59.054 50.000 0.00 0.00 42.54 4.79
3287 5172 1.901464 GCTCGGGCTTTGTTTGGGA 60.901 57.895 0.00 0.00 35.22 4.37
3289 5174 0.103937 TTTGCTCGGGCTTTGTTTGG 59.896 50.000 9.62 0.00 39.59 3.28
3293 5178 1.686052 TCAATTTTGCTCGGGCTTTGT 59.314 42.857 9.62 0.00 39.59 2.83
3297 5182 1.620822 AACTCAATTTTGCTCGGGCT 58.379 45.000 9.62 0.00 39.59 5.19
3300 5185 4.756084 AGAGAAACTCAATTTTGCTCGG 57.244 40.909 0.00 0.00 32.06 4.63
3312 5197 8.613482 AGCACAAACTAAAGTAAAGAGAAACTC 58.387 33.333 0.00 0.00 0.00 3.01
3327 5212 3.626930 ACAAGTTGGGAGCACAAACTAA 58.373 40.909 7.96 0.00 31.17 2.24
3347 5232 2.159338 TGGCGTTGAACGGATACTCTAC 60.159 50.000 20.01 0.00 42.82 2.59
3374 5259 4.407365 TCCACTCAAGTCAGTGATCAGTA 58.593 43.478 1.86 0.00 45.92 2.74
3388 5273 2.210116 GAGTTGTTCGCTTCCACTCAA 58.790 47.619 0.00 0.00 0.00 3.02
3391 5276 1.134521 TGTGAGTTGTTCGCTTCCACT 60.135 47.619 0.00 0.00 37.22 4.00
3395 5281 4.391830 TCCAATATGTGAGTTGTTCGCTTC 59.608 41.667 0.00 0.00 37.22 3.86
3399 5285 5.801350 ACATCCAATATGTGAGTTGTTCG 57.199 39.130 0.00 0.00 0.00 3.95
3422 5308 9.856488 GTTGAGTTCAGATAACTCTTATGTGTA 57.144 33.333 16.40 0.00 45.13 2.90
3452 5338 0.678048 AATGGTCAAGGAAGAGCGGC 60.678 55.000 0.00 0.00 38.81 6.53
3484 5373 6.719370 ACTACAAGCAATGGTGAAATTCCTTA 59.281 34.615 0.00 0.00 0.00 2.69
3596 5485 2.333938 GCGGTAATAGCGGCGAGA 59.666 61.111 12.98 0.00 39.82 4.04
3628 5517 1.064803 CCCTTGAGTGTCGATCGAGAG 59.935 57.143 20.09 4.71 30.81 3.20
3640 5529 4.475527 GGTTCGCAACCCTTGAGT 57.524 55.556 6.76 0.00 46.12 3.41
3697 5586 1.227999 AAACTCGTCGTCGGTCGGTA 61.228 55.000 1.55 0.00 40.32 4.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.