Multiple sequence alignment - TraesCS7B01G288500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G288500 chr7B 100.000 4011 0 0 566 4576 524399259 524395249 0.000000e+00 7408.0
1 TraesCS7B01G288500 chr7B 100.000 266 0 0 1 266 524399824 524399559 4.110000e-135 492.0
2 TraesCS7B01G288500 chr7B 92.308 91 7 0 1906 1996 740996240 740996150 3.720000e-26 130.0
3 TraesCS7B01G288500 chr7A 94.395 1588 53 17 1615 3197 561621103 561619547 0.000000e+00 2407.0
4 TraesCS7B01G288500 chr7A 88.395 1034 60 25 566 1587 561622153 561621168 0.000000e+00 1190.0
5 TraesCS7B01G288500 chr7A 92.867 729 36 14 3215 3931 561619497 561618773 0.000000e+00 1044.0
6 TraesCS7B01G288500 chr7A 91.346 104 7 2 3929 4031 561618856 561618754 1.720000e-29 141.0
7 TraesCS7B01G288500 chr7A 75.093 269 55 6 4252 4509 124082580 124082847 1.040000e-21 115.0
8 TraesCS7B01G288500 chr7D 87.597 1161 86 32 2048 3198 495876435 495875323 0.000000e+00 1293.0
9 TraesCS7B01G288500 chr7D 93.987 765 27 7 809 1563 495877966 495877211 0.000000e+00 1140.0
10 TraesCS7B01G288500 chr7D 95.814 645 22 3 3205 3849 495875289 495874650 0.000000e+00 1037.0
11 TraesCS7B01G288500 chr7D 96.679 542 18 0 4035 4576 495873105 495872564 0.000000e+00 902.0
12 TraesCS7B01G288500 chr7D 95.528 246 10 1 566 810 495878266 495878021 4.290000e-105 392.0
13 TraesCS7B01G288500 chr7D 96.954 197 4 2 3841 4037 495873398 495873204 3.410000e-86 329.0
14 TraesCS7B01G288500 chr7D 91.765 85 3 3 3929 4012 495873391 495873310 1.040000e-21 115.0
15 TraesCS7B01G288500 chr7D 73.333 270 56 13 4251 4507 29723725 29723459 8.160000e-13 86.1
16 TraesCS7B01G288500 chr6D 92.553 94 7 0 1904 1997 380137066 380136973 7.990000e-28 135.0
17 TraesCS7B01G288500 chr6D 91.489 94 6 2 1898 1990 199210320 199210412 1.340000e-25 128.0
18 TraesCS7B01G288500 chr6D 82.143 112 20 0 4251 4362 312696132 312696021 3.770000e-16 97.1
19 TraesCS7B01G288500 chr6D 79.817 109 21 1 4405 4513 393304856 393304749 1.360000e-10 78.7
20 TraesCS7B01G288500 chr2D 93.407 91 6 0 1903 1993 302248100 302248010 7.990000e-28 135.0
21 TraesCS7B01G288500 chr2D 77.273 198 38 5 4173 4367 561930140 561929947 4.840000e-20 110.0
22 TraesCS7B01G288500 chr5D 90.625 96 9 0 1904 1999 128577586 128577681 1.340000e-25 128.0
23 TraesCS7B01G288500 chr5D 78.022 182 36 3 4179 4358 404861633 404861454 1.350000e-20 111.0
24 TraesCS7B01G288500 chr5B 90.625 96 9 0 1904 1999 140965928 140966023 1.340000e-25 128.0
25 TraesCS7B01G288500 chr1D 89.796 98 10 0 1900 1997 307830193 307830096 4.810000e-25 126.0
26 TraesCS7B01G288500 chr1D 73.714 350 73 11 4173 4507 461003047 461003392 8.040000e-23 119.0
27 TraesCS7B01G288500 chr1D 88.889 72 6 2 4286 4356 463822000 463822070 2.270000e-13 87.9
28 TraesCS7B01G288500 chr1D 75.843 178 39 4 4179 4354 463841262 463841437 2.270000e-13 87.9
29 TraesCS7B01G288500 chr3B 88.350 103 10 2 1899 1999 113917057 113917159 6.220000e-24 122.0
30 TraesCS7B01G288500 chr3B 90.909 55 5 0 4455 4509 151184064 151184010 1.770000e-09 75.0
31 TraesCS7B01G288500 chr3D 74.172 302 68 8 4217 4510 566892826 566893125 2.890000e-22 117.0
32 TraesCS7B01G288500 chr3D 73.361 244 53 8 4277 4509 430303425 430303667 3.800000e-11 80.5
33 TraesCS7B01G288500 chr3D 82.895 76 12 1 4280 4354 580123760 580123685 2.950000e-07 67.6
34 TraesCS7B01G288500 chr6A 82.353 119 17 4 4251 4367 610643966 610643850 2.910000e-17 100.0
35 TraesCS7B01G288500 chr6A 73.646 277 50 17 4251 4509 449417555 449417284 8.160000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G288500 chr7B 524395249 524399824 4575 True 3950.0 7408 100.000000 1 4576 2 chr7B.!!$R2 4575
1 TraesCS7B01G288500 chr7A 561618754 561622153 3399 True 1195.5 2407 91.750750 566 4031 4 chr7A.!!$R1 3465
2 TraesCS7B01G288500 chr7D 495872564 495878266 5702 True 744.0 1293 94.046286 566 4576 7 chr7D.!!$R2 4010

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
58 59 0.037232 ACGAAAGGAAAGGAGCCGAG 60.037 55.0 0.00 0.00 0.00 4.63 F
59 60 0.037232 CGAAAGGAAAGGAGCCGAGT 60.037 55.0 0.00 0.00 0.00 4.18 F
188 189 0.106519 AATTTGATCGGAGGGCCCTG 60.107 55.0 34.59 17.32 0.00 4.45 F
1416 1483 0.107081 TCGGTTTTCTCGAGGGCAAA 59.893 50.0 13.56 6.91 32.51 3.68 F
1741 2023 1.177401 GCAGTTGAGGGGATTGTTCC 58.823 55.0 0.00 0.00 41.77 3.62 F
3344 3838 2.040278 GGCATCCCCAGAATATGCACTA 59.960 50.0 8.59 0.00 46.18 2.74 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1564 1632 0.323360 GCATCCCTGTAAGTGCCCAA 60.323 55.000 0.0 0.0 0.00 4.12 R
1575 1655 1.838112 TTGCCTTGTAAGCATCCCTG 58.162 50.000 0.0 0.0 40.59 4.45 R
2097 2547 2.234908 AGGGACAGAGTTGTACAGATGC 59.765 50.000 0.0 0.0 40.14 3.91 R
3344 3838 1.151450 CAAAGGTGAGGCAGTGGGT 59.849 57.895 0.0 0.0 0.00 4.51 R
3356 3850 1.210967 TCCACAAAGTCCGACAAAGGT 59.789 47.619 0.4 0.0 0.00 3.50 R
4349 6205 0.464013 TTTTCTTCGGTGGCGGTTGA 60.464 50.000 0.0 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.679327 GTTATCACAAATCACTCCCCTAAC 57.321 41.667 0.00 0.00 0.00 2.34
24 25 3.328382 TCACAAATCACTCCCCTAACG 57.672 47.619 0.00 0.00 0.00 3.18
25 26 2.901192 TCACAAATCACTCCCCTAACGA 59.099 45.455 0.00 0.00 0.00 3.85
26 27 3.517901 TCACAAATCACTCCCCTAACGAT 59.482 43.478 0.00 0.00 0.00 3.73
27 28 4.019681 TCACAAATCACTCCCCTAACGATT 60.020 41.667 0.00 0.00 0.00 3.34
28 29 4.332819 CACAAATCACTCCCCTAACGATTC 59.667 45.833 0.00 0.00 0.00 2.52
29 30 4.019681 ACAAATCACTCCCCTAACGATTCA 60.020 41.667 0.00 0.00 0.00 2.57
30 31 3.821421 ATCACTCCCCTAACGATTCAC 57.179 47.619 0.00 0.00 0.00 3.18
31 32 2.531771 TCACTCCCCTAACGATTCACA 58.468 47.619 0.00 0.00 0.00 3.58
32 33 2.901192 TCACTCCCCTAACGATTCACAA 59.099 45.455 0.00 0.00 0.00 3.33
33 34 3.325425 TCACTCCCCTAACGATTCACAAA 59.675 43.478 0.00 0.00 0.00 2.83
34 35 3.684788 CACTCCCCTAACGATTCACAAAG 59.315 47.826 0.00 0.00 0.00 2.77
35 36 3.270877 CTCCCCTAACGATTCACAAAGG 58.729 50.000 0.00 0.00 0.00 3.11
36 37 2.907696 TCCCCTAACGATTCACAAAGGA 59.092 45.455 0.00 0.00 0.00 3.36
37 38 3.055385 TCCCCTAACGATTCACAAAGGAG 60.055 47.826 0.00 0.00 0.00 3.69
38 39 3.270877 CCCTAACGATTCACAAAGGAGG 58.729 50.000 0.00 0.00 0.00 4.30
39 40 3.055385 CCCTAACGATTCACAAAGGAGGA 60.055 47.826 0.00 0.00 0.00 3.71
40 41 3.933332 CCTAACGATTCACAAAGGAGGAC 59.067 47.826 0.00 0.00 0.00 3.85
41 42 2.080286 ACGATTCACAAAGGAGGACG 57.920 50.000 0.00 0.00 0.00 4.79
42 43 1.616865 ACGATTCACAAAGGAGGACGA 59.383 47.619 0.00 0.00 0.00 4.20
43 44 2.036733 ACGATTCACAAAGGAGGACGAA 59.963 45.455 0.00 0.00 0.00 3.85
44 45 3.064207 CGATTCACAAAGGAGGACGAAA 58.936 45.455 0.00 0.00 0.00 3.46
45 46 3.123621 CGATTCACAAAGGAGGACGAAAG 59.876 47.826 0.00 0.00 0.00 2.62
46 47 2.543777 TCACAAAGGAGGACGAAAGG 57.456 50.000 0.00 0.00 0.00 3.11
47 48 2.043992 TCACAAAGGAGGACGAAAGGA 58.956 47.619 0.00 0.00 0.00 3.36
48 49 2.436542 TCACAAAGGAGGACGAAAGGAA 59.563 45.455 0.00 0.00 0.00 3.36
49 50 3.118186 TCACAAAGGAGGACGAAAGGAAA 60.118 43.478 0.00 0.00 0.00 3.13
50 51 3.251004 CACAAAGGAGGACGAAAGGAAAG 59.749 47.826 0.00 0.00 0.00 2.62
51 52 2.814336 CAAAGGAGGACGAAAGGAAAGG 59.186 50.000 0.00 0.00 0.00 3.11
52 53 2.025636 AGGAGGACGAAAGGAAAGGA 57.974 50.000 0.00 0.00 0.00 3.36
53 54 1.903183 AGGAGGACGAAAGGAAAGGAG 59.097 52.381 0.00 0.00 0.00 3.69
54 55 1.676314 GGAGGACGAAAGGAAAGGAGC 60.676 57.143 0.00 0.00 0.00 4.70
55 56 0.325272 AGGACGAAAGGAAAGGAGCC 59.675 55.000 0.00 0.00 0.00 4.70
56 57 1.019805 GGACGAAAGGAAAGGAGCCG 61.020 60.000 0.00 0.00 0.00 5.52
57 58 0.037605 GACGAAAGGAAAGGAGCCGA 60.038 55.000 0.00 0.00 0.00 5.54
58 59 0.037232 ACGAAAGGAAAGGAGCCGAG 60.037 55.000 0.00 0.00 0.00 4.63
59 60 0.037232 CGAAAGGAAAGGAGCCGAGT 60.037 55.000 0.00 0.00 0.00 4.18
60 61 1.443802 GAAAGGAAAGGAGCCGAGTG 58.556 55.000 0.00 0.00 0.00 3.51
61 62 1.002087 GAAAGGAAAGGAGCCGAGTGA 59.998 52.381 0.00 0.00 0.00 3.41
62 63 1.280457 AAGGAAAGGAGCCGAGTGAT 58.720 50.000 0.00 0.00 0.00 3.06
63 64 2.160721 AGGAAAGGAGCCGAGTGATA 57.839 50.000 0.00 0.00 0.00 2.15
64 65 2.035632 AGGAAAGGAGCCGAGTGATAG 58.964 52.381 0.00 0.00 0.00 2.08
65 66 2.032620 GGAAAGGAGCCGAGTGATAGA 58.967 52.381 0.00 0.00 0.00 1.98
66 67 2.035321 GGAAAGGAGCCGAGTGATAGAG 59.965 54.545 0.00 0.00 0.00 2.43
67 68 2.738587 AAGGAGCCGAGTGATAGAGA 57.261 50.000 0.00 0.00 0.00 3.10
68 69 2.969821 AGGAGCCGAGTGATAGAGAT 57.030 50.000 0.00 0.00 0.00 2.75
69 70 2.790433 AGGAGCCGAGTGATAGAGATC 58.210 52.381 0.00 0.00 0.00 2.75
70 71 2.375174 AGGAGCCGAGTGATAGAGATCT 59.625 50.000 0.00 0.00 32.79 2.75
71 72 2.487762 GGAGCCGAGTGATAGAGATCTG 59.512 54.545 0.00 0.00 32.79 2.90
72 73 3.407698 GAGCCGAGTGATAGAGATCTGA 58.592 50.000 0.00 0.00 32.79 3.27
73 74 3.146066 AGCCGAGTGATAGAGATCTGAC 58.854 50.000 0.00 0.00 32.79 3.51
74 75 2.095969 GCCGAGTGATAGAGATCTGACG 60.096 54.545 0.00 0.00 32.79 4.35
75 76 3.394719 CCGAGTGATAGAGATCTGACGA 58.605 50.000 0.00 0.00 32.79 4.20
76 77 3.185594 CCGAGTGATAGAGATCTGACGAC 59.814 52.174 0.00 0.00 32.79 4.34
77 78 3.804873 CGAGTGATAGAGATCTGACGACA 59.195 47.826 0.00 0.00 32.79 4.35
78 79 4.318475 CGAGTGATAGAGATCTGACGACAC 60.318 50.000 0.00 4.38 32.79 3.67
79 80 4.776349 AGTGATAGAGATCTGACGACACT 58.224 43.478 0.00 6.65 32.79 3.55
80 81 4.814234 AGTGATAGAGATCTGACGACACTC 59.186 45.833 0.00 0.00 31.87 3.51
81 82 4.572795 GTGATAGAGATCTGACGACACTCA 59.427 45.833 0.00 0.00 32.79 3.41
82 83 4.572795 TGATAGAGATCTGACGACACTCAC 59.427 45.833 0.00 0.00 32.79 3.51
83 84 1.735018 AGAGATCTGACGACACTCACG 59.265 52.381 0.00 0.00 32.16 4.35
84 85 1.465387 GAGATCTGACGACACTCACGT 59.535 52.381 0.00 0.00 46.58 4.49
91 92 4.907946 GACACTCACGTCGTTCGA 57.092 55.556 0.00 0.00 42.86 3.71
92 93 2.407798 GACACTCACGTCGTTCGAC 58.592 57.895 14.25 14.25 42.86 4.20
93 94 0.316442 GACACTCACGTCGTTCGACA 60.316 55.000 21.94 5.20 42.86 4.35
94 95 0.316772 ACACTCACGTCGTTCGACAG 60.317 55.000 21.94 16.82 42.86 3.51
95 96 0.316772 CACTCACGTCGTTCGACAGT 60.317 55.000 21.94 17.34 42.86 3.55
96 97 0.379669 ACTCACGTCGTTCGACAGTT 59.620 50.000 21.94 5.88 42.86 3.16
97 98 1.202222 ACTCACGTCGTTCGACAGTTT 60.202 47.619 21.94 3.71 42.86 2.66
98 99 1.850441 CTCACGTCGTTCGACAGTTTT 59.150 47.619 21.94 1.57 42.86 2.43
99 100 1.584761 TCACGTCGTTCGACAGTTTTG 59.415 47.619 21.94 11.75 42.86 2.44
100 101 0.299597 ACGTCGTTCGACAGTTTTGC 59.700 50.000 21.94 0.00 42.86 3.68
101 102 0.299300 CGTCGTTCGACAGTTTTGCA 59.701 50.000 21.94 0.00 42.86 4.08
102 103 1.267136 CGTCGTTCGACAGTTTTGCAA 60.267 47.619 21.94 0.00 42.86 4.08
103 104 2.776330 GTCGTTCGACAGTTTTGCAAA 58.224 42.857 18.42 8.05 35.41 3.68
104 105 3.165124 GTCGTTCGACAGTTTTGCAAAA 58.835 40.909 20.46 20.46 35.41 2.44
105 106 3.604627 GTCGTTCGACAGTTTTGCAAAAA 59.395 39.130 25.40 6.90 35.41 1.94
133 134 6.495706 TCTAGTGTGCTAGATACATGTTTCG 58.504 40.000 2.30 0.00 46.25 3.46
134 135 5.073311 AGTGTGCTAGATACATGTTTCGT 57.927 39.130 2.30 0.00 0.00 3.85
135 136 5.479306 AGTGTGCTAGATACATGTTTCGTT 58.521 37.500 2.30 0.00 0.00 3.85
136 137 5.577164 AGTGTGCTAGATACATGTTTCGTTC 59.423 40.000 2.30 1.09 0.00 3.95
137 138 5.347635 GTGTGCTAGATACATGTTTCGTTCA 59.652 40.000 2.30 3.72 0.00 3.18
138 139 5.929415 TGTGCTAGATACATGTTTCGTTCAA 59.071 36.000 2.30 0.00 0.00 2.69
139 140 6.090763 TGTGCTAGATACATGTTTCGTTCAAG 59.909 38.462 2.30 3.00 0.00 3.02
140 141 6.090898 GTGCTAGATACATGTTTCGTTCAAGT 59.909 38.462 2.30 0.00 0.00 3.16
141 142 7.274904 GTGCTAGATACATGTTTCGTTCAAGTA 59.725 37.037 2.30 0.00 0.00 2.24
142 143 7.815549 TGCTAGATACATGTTTCGTTCAAGTAA 59.184 33.333 2.30 0.00 0.00 2.24
143 144 8.818057 GCTAGATACATGTTTCGTTCAAGTAAT 58.182 33.333 2.30 0.00 0.00 1.89
155 156 5.156804 GTTCAAGTAATATGAACGGCAGG 57.843 43.478 3.92 0.00 44.90 4.85
156 157 4.746535 TCAAGTAATATGAACGGCAGGA 57.253 40.909 0.00 0.00 0.00 3.86
157 158 5.290493 TCAAGTAATATGAACGGCAGGAT 57.710 39.130 0.00 0.00 0.00 3.24
158 159 5.056480 TCAAGTAATATGAACGGCAGGATG 58.944 41.667 0.00 0.00 40.87 3.51
159 160 4.689612 AGTAATATGAACGGCAGGATGT 57.310 40.909 0.00 0.00 39.31 3.06
160 161 4.380531 AGTAATATGAACGGCAGGATGTG 58.619 43.478 0.00 0.00 39.31 3.21
161 162 3.281727 AATATGAACGGCAGGATGTGT 57.718 42.857 0.00 0.00 39.31 3.72
162 163 2.779755 TATGAACGGCAGGATGTGTT 57.220 45.000 0.00 0.00 39.01 3.32
163 164 1.909700 ATGAACGGCAGGATGTGTTT 58.090 45.000 0.00 0.00 37.04 2.83
164 165 2.552599 TGAACGGCAGGATGTGTTTA 57.447 45.000 0.00 0.00 37.04 2.01
165 166 2.852449 TGAACGGCAGGATGTGTTTAA 58.148 42.857 0.00 0.00 37.04 1.52
166 167 3.417101 TGAACGGCAGGATGTGTTTAAT 58.583 40.909 0.00 0.00 37.04 1.40
167 168 3.823873 TGAACGGCAGGATGTGTTTAATT 59.176 39.130 0.00 0.00 37.04 1.40
168 169 4.279671 TGAACGGCAGGATGTGTTTAATTT 59.720 37.500 0.00 0.00 37.04 1.82
169 170 5.473846 TGAACGGCAGGATGTGTTTAATTTA 59.526 36.000 0.00 0.00 37.04 1.40
170 171 5.968528 ACGGCAGGATGTGTTTAATTTAA 57.031 34.783 0.00 0.00 39.31 1.52
171 172 6.524101 ACGGCAGGATGTGTTTAATTTAAT 57.476 33.333 0.00 0.00 39.31 1.40
172 173 6.930731 ACGGCAGGATGTGTTTAATTTAATT 58.069 32.000 0.00 0.00 39.31 1.40
173 174 7.382898 ACGGCAGGATGTGTTTAATTTAATTT 58.617 30.769 0.00 0.00 39.31 1.82
174 175 7.330700 ACGGCAGGATGTGTTTAATTTAATTTG 59.669 33.333 0.00 0.00 39.31 2.32
175 176 7.543868 CGGCAGGATGTGTTTAATTTAATTTGA 59.456 33.333 0.00 0.00 39.31 2.69
176 177 9.382275 GGCAGGATGTGTTTAATTTAATTTGAT 57.618 29.630 0.00 0.00 39.31 2.57
179 180 9.801873 AGGATGTGTTTAATTTAATTTGATCGG 57.198 29.630 0.00 0.00 0.00 4.18
180 181 9.796120 GGATGTGTTTAATTTAATTTGATCGGA 57.204 29.630 0.00 0.00 0.00 4.55
182 183 9.801873 ATGTGTTTAATTTAATTTGATCGGAGG 57.198 29.630 0.00 0.00 0.00 4.30
183 184 8.247562 TGTGTTTAATTTAATTTGATCGGAGGG 58.752 33.333 0.00 0.00 0.00 4.30
184 185 7.222031 GTGTTTAATTTAATTTGATCGGAGGGC 59.778 37.037 0.00 0.00 0.00 5.19
185 186 4.937201 AATTTAATTTGATCGGAGGGCC 57.063 40.909 0.00 0.00 0.00 5.80
186 187 2.358322 TTAATTTGATCGGAGGGCCC 57.642 50.000 16.46 16.46 0.00 5.80
187 188 1.518367 TAATTTGATCGGAGGGCCCT 58.482 50.000 29.18 29.18 0.00 5.19
188 189 0.106519 AATTTGATCGGAGGGCCCTG 60.107 55.000 34.59 17.32 0.00 4.45
189 190 0.988145 ATTTGATCGGAGGGCCCTGA 60.988 55.000 34.59 22.94 0.00 3.86
190 191 0.988145 TTTGATCGGAGGGCCCTGAT 60.988 55.000 34.59 26.98 33.17 2.90
191 192 1.410850 TTGATCGGAGGGCCCTGATC 61.411 60.000 31.89 31.89 41.29 2.92
192 193 1.838846 GATCGGAGGGCCCTGATCA 60.839 63.158 32.86 16.76 40.94 2.92
193 194 1.151943 ATCGGAGGGCCCTGATCAT 60.152 57.895 34.59 12.94 0.00 2.45
194 195 0.769776 ATCGGAGGGCCCTGATCATT 60.770 55.000 34.59 1.71 0.00 2.57
195 196 1.072159 CGGAGGGCCCTGATCATTC 59.928 63.158 34.59 13.51 0.00 2.67
196 197 1.458045 GGAGGGCCCTGATCATTCC 59.542 63.158 34.59 19.60 0.00 3.01
197 198 1.072159 GAGGGCCCTGATCATTCCG 59.928 63.158 34.59 0.00 0.00 4.30
198 199 1.694169 AGGGCCCTGATCATTCCGT 60.694 57.895 28.05 0.00 0.00 4.69
199 200 1.526917 GGGCCCTGATCATTCCGTG 60.527 63.158 17.04 0.00 0.00 4.94
200 201 1.526887 GGCCCTGATCATTCCGTGA 59.473 57.895 0.00 0.00 42.06 4.35
201 202 0.107214 GGCCCTGATCATTCCGTGAA 60.107 55.000 0.00 0.00 40.97 3.18
202 203 1.017387 GCCCTGATCATTCCGTGAAC 58.983 55.000 0.00 0.00 40.97 3.18
203 204 1.678728 GCCCTGATCATTCCGTGAACA 60.679 52.381 0.00 0.00 40.97 3.18
208 209 4.715896 CTGATCATTCCGTGAACAGTTTG 58.284 43.478 0.00 0.00 46.75 2.93
209 210 4.133820 TGATCATTCCGTGAACAGTTTGT 58.866 39.130 0.00 0.00 40.97 2.83
210 211 4.578516 TGATCATTCCGTGAACAGTTTGTT 59.421 37.500 0.00 0.00 44.37 2.83
211 212 4.285807 TCATTCCGTGAACAGTTTGTTG 57.714 40.909 0.00 0.00 41.28 3.33
212 213 3.692101 TCATTCCGTGAACAGTTTGTTGT 59.308 39.130 0.00 0.00 41.28 3.32
213 214 3.479505 TTCCGTGAACAGTTTGTTGTG 57.520 42.857 0.00 0.00 41.28 3.33
214 215 2.428491 TCCGTGAACAGTTTGTTGTGT 58.572 42.857 0.00 0.00 41.28 3.72
215 216 2.160615 TCCGTGAACAGTTTGTTGTGTG 59.839 45.455 0.00 0.00 41.28 3.82
216 217 2.514902 CGTGAACAGTTTGTTGTGTGG 58.485 47.619 0.00 0.00 41.28 4.17
217 218 2.160615 CGTGAACAGTTTGTTGTGTGGA 59.839 45.455 0.00 0.00 41.28 4.02
218 219 3.181501 CGTGAACAGTTTGTTGTGTGGAT 60.182 43.478 0.00 0.00 41.28 3.41
219 220 4.674101 CGTGAACAGTTTGTTGTGTGGATT 60.674 41.667 0.00 0.00 41.28 3.01
220 221 5.167845 GTGAACAGTTTGTTGTGTGGATTT 58.832 37.500 0.00 0.00 41.28 2.17
221 222 6.326375 GTGAACAGTTTGTTGTGTGGATTTA 58.674 36.000 0.00 0.00 41.28 1.40
222 223 6.978080 GTGAACAGTTTGTTGTGTGGATTTAT 59.022 34.615 0.00 0.00 41.28 1.40
223 224 6.977502 TGAACAGTTTGTTGTGTGGATTTATG 59.022 34.615 0.00 0.00 41.28 1.90
224 225 6.463995 ACAGTTTGTTGTGTGGATTTATGT 57.536 33.333 0.00 0.00 0.00 2.29
225 226 6.872920 ACAGTTTGTTGTGTGGATTTATGTT 58.127 32.000 0.00 0.00 0.00 2.71
226 227 7.327214 ACAGTTTGTTGTGTGGATTTATGTTT 58.673 30.769 0.00 0.00 0.00 2.83
227 228 7.277539 ACAGTTTGTTGTGTGGATTTATGTTTG 59.722 33.333 0.00 0.00 0.00 2.93
228 229 7.277539 CAGTTTGTTGTGTGGATTTATGTTTGT 59.722 33.333 0.00 0.00 0.00 2.83
229 230 7.821846 AGTTTGTTGTGTGGATTTATGTTTGTT 59.178 29.630 0.00 0.00 0.00 2.83
230 231 7.763172 TTGTTGTGTGGATTTATGTTTGTTC 57.237 32.000 0.00 0.00 0.00 3.18
231 232 7.106439 TGTTGTGTGGATTTATGTTTGTTCT 57.894 32.000 0.00 0.00 0.00 3.01
232 233 7.551585 TGTTGTGTGGATTTATGTTTGTTCTT 58.448 30.769 0.00 0.00 0.00 2.52
233 234 8.687242 TGTTGTGTGGATTTATGTTTGTTCTTA 58.313 29.630 0.00 0.00 0.00 2.10
234 235 9.180678 GTTGTGTGGATTTATGTTTGTTCTTAG 57.819 33.333 0.00 0.00 0.00 2.18
235 236 8.458573 TGTGTGGATTTATGTTTGTTCTTAGT 57.541 30.769 0.00 0.00 0.00 2.24
236 237 8.349245 TGTGTGGATTTATGTTTGTTCTTAGTG 58.651 33.333 0.00 0.00 0.00 2.74
237 238 8.349983 GTGTGGATTTATGTTTGTTCTTAGTGT 58.650 33.333 0.00 0.00 0.00 3.55
238 239 9.562408 TGTGGATTTATGTTTGTTCTTAGTGTA 57.438 29.630 0.00 0.00 0.00 2.90
244 245 8.840833 TTATGTTTGTTCTTAGTGTAGATGCA 57.159 30.769 0.00 0.00 0.00 3.96
245 246 6.785488 TGTTTGTTCTTAGTGTAGATGCAG 57.215 37.500 0.00 0.00 0.00 4.41
246 247 5.179368 TGTTTGTTCTTAGTGTAGATGCAGC 59.821 40.000 0.00 0.00 0.00 5.25
247 248 3.511699 TGTTCTTAGTGTAGATGCAGCG 58.488 45.455 0.00 0.00 0.00 5.18
248 249 3.192633 TGTTCTTAGTGTAGATGCAGCGA 59.807 43.478 0.00 0.00 0.00 4.93
249 250 4.174009 GTTCTTAGTGTAGATGCAGCGAA 58.826 43.478 0.00 0.00 0.00 4.70
250 251 4.450082 TCTTAGTGTAGATGCAGCGAAA 57.550 40.909 0.00 0.00 0.00 3.46
251 252 4.816392 TCTTAGTGTAGATGCAGCGAAAA 58.184 39.130 0.00 0.00 0.00 2.29
252 253 5.234752 TCTTAGTGTAGATGCAGCGAAAAA 58.765 37.500 0.00 0.00 0.00 1.94
610 611 0.238553 GACAAGAAAAGGTCGGCAGC 59.761 55.000 0.00 0.00 0.00 5.25
656 657 5.215903 CGTGTCATTCGCACTCTATCTATT 58.784 41.667 0.00 0.00 34.91 1.73
697 698 1.869690 GAAGTCAAGCGCTGTTCCC 59.130 57.895 12.58 0.00 0.00 3.97
730 731 8.273780 TCATTTTCTTTAATCTGAGAGAAGCC 57.726 34.615 0.00 0.00 30.60 4.35
859 917 3.129638 GTCTGACACGAGAGAAGGCTTAT 59.870 47.826 0.00 0.00 0.00 1.73
878 936 5.050702 GCTTATACGAGCCAGCTTAGAAAAG 60.051 44.000 0.00 0.00 36.66 2.27
956 1014 1.447317 GAGAGCGCAGAGGAGAGGAG 61.447 65.000 11.47 0.00 0.00 3.69
957 1015 1.453015 GAGCGCAGAGGAGAGGAGA 60.453 63.158 11.47 0.00 0.00 3.71
958 1016 1.447317 GAGCGCAGAGGAGAGGAGAG 61.447 65.000 11.47 0.00 0.00 3.20
959 1017 2.489275 GCGCAGAGGAGAGGAGAGG 61.489 68.421 0.30 0.00 0.00 3.69
960 1018 1.225983 CGCAGAGGAGAGGAGAGGA 59.774 63.158 0.00 0.00 0.00 3.71
1357 1415 4.327680 GGAAGCTATTGACAGGTGACTTT 58.672 43.478 0.00 0.00 40.21 2.66
1358 1416 4.762251 GGAAGCTATTGACAGGTGACTTTT 59.238 41.667 0.00 0.00 40.21 2.27
1370 1428 6.449698 ACAGGTGACTTTTATGCATTTCTTG 58.550 36.000 3.54 0.00 40.21 3.02
1409 1476 2.033049 GGAGATCGATCGGTTTTCTCGA 59.967 50.000 19.33 0.00 44.54 4.04
1412 1479 0.454600 TCGATCGGTTTTCTCGAGGG 59.545 55.000 16.41 0.00 40.09 4.30
1416 1483 0.107081 TCGGTTTTCTCGAGGGCAAA 59.893 50.000 13.56 6.91 32.51 3.68
1428 1495 5.059404 TCGAGGGCAAATGATTTTCTTTC 57.941 39.130 0.00 0.00 0.00 2.62
1492 1559 8.037382 GCTTTATGCTCTCTTGATAATATGCA 57.963 34.615 0.00 0.00 38.95 3.96
1496 1563 4.984785 TGCTCTCTTGATAATATGCACGTC 59.015 41.667 0.00 0.00 0.00 4.34
1515 1582 3.623060 CGTCCTGATTTGATGGTACCAAG 59.377 47.826 20.76 9.65 0.00 3.61
1564 1632 8.752005 TGGATTCTATACTGCTTAAATTTGCT 57.248 30.769 0.00 0.00 0.00 3.91
1587 1667 2.289565 GGCACTTACAGGGATGCTTAC 58.710 52.381 0.00 0.00 38.18 2.34
1589 1669 3.343617 GCACTTACAGGGATGCTTACAA 58.656 45.455 0.00 0.00 35.16 2.41
1590 1670 3.375299 GCACTTACAGGGATGCTTACAAG 59.625 47.826 0.00 0.00 35.16 3.16
1591 1671 3.941483 CACTTACAGGGATGCTTACAAGG 59.059 47.826 0.00 0.00 0.00 3.61
1592 1672 2.710096 TACAGGGATGCTTACAAGGC 57.290 50.000 0.00 0.00 0.00 4.35
1596 1676 2.762327 CAGGGATGCTTACAAGGCAAAT 59.238 45.455 0.00 0.00 43.14 2.32
1605 1685 9.586435 GATGCTTACAAGGCAAATAAGTAAAAT 57.414 29.630 0.00 0.00 43.14 1.82
1607 1687 9.849166 TGCTTACAAGGCAAATAAGTAAAATAC 57.151 29.630 0.00 0.00 36.71 1.89
1614 1694 8.975663 AGGCAAATAAGTAAAATACTCTACCC 57.024 34.615 0.00 0.00 38.26 3.69
1616 1696 7.350467 GCAAATAAGTAAAATACTCTACCCGC 58.650 38.462 0.00 0.00 38.26 6.13
1617 1697 7.011669 GCAAATAAGTAAAATACTCTACCCGCA 59.988 37.037 0.00 0.00 38.26 5.69
1625 1742 2.795231 ACTCTACCCGCACTACACTA 57.205 50.000 0.00 0.00 0.00 2.74
1693 1975 7.726079 TCTTCTACGACGTGAAATTTATGTTG 58.274 34.615 11.56 0.00 0.00 3.33
1741 2023 1.177401 GCAGTTGAGGGGATTGTTCC 58.823 55.000 0.00 0.00 41.77 3.62
1752 2034 3.195610 GGGGATTGTTCCATTTTCACTCC 59.804 47.826 0.00 0.00 44.60 3.85
1768 2050 8.868522 TTTTCACTCCAGAAGTATCAAATCAT 57.131 30.769 0.00 0.00 36.07 2.45
1840 2261 6.267070 TGAAGGACCGTTTGTGTTTTAAATC 58.733 36.000 0.00 0.00 0.00 2.17
1850 2282 7.111041 CGTTTGTGTTTTAAATCTGTTACTCCG 59.889 37.037 0.00 0.00 0.00 4.63
1914 2346 7.896496 CCCAATATATTAGTGAGTACTCCCTCT 59.104 40.741 20.11 16.41 38.36 3.69
1932 2364 9.495382 ACTCCCTCTGTAAAGAAATATAAGACT 57.505 33.333 0.00 0.00 0.00 3.24
1980 2412 7.253422 TCTAAACGTTCTTCTATCCCTTTACG 58.747 38.462 0.00 0.00 0.00 3.18
2062 2512 7.769970 AGTTGACCAATTCATGTTTGTTCATTT 59.230 29.630 10.42 2.96 32.84 2.32
2097 2547 4.224715 TGAACAGGCTAAGATATCGTCG 57.775 45.455 0.00 0.00 0.00 5.12
2152 2602 6.569127 TGTATATTGCAGGAGAAAACCCTA 57.431 37.500 0.00 0.00 31.64 3.53
2227 2677 9.040939 ACCTTTATGTTTTAGAATTTGTTGCAC 57.959 29.630 0.00 0.00 0.00 4.57
2465 2921 2.114616 CCAGAGGCTCAGGTCTGTAAT 58.885 52.381 18.26 0.00 38.88 1.89
2549 3006 4.614555 TGGCTTTGTATACTCGCAAATG 57.385 40.909 4.17 0.00 34.60 2.32
2584 3041 4.142160 GCTTTTGAAAAGAGACACTTGGGT 60.142 41.667 20.91 0.00 38.98 4.51
2609 3067 4.989279 ATTGAATGCACCTGTTATCACC 57.011 40.909 0.00 0.00 0.00 4.02
2629 3087 2.878406 CCGAGGATTTGTTGTGTTGACT 59.122 45.455 0.00 0.00 0.00 3.41
2630 3088 3.303990 CCGAGGATTTGTTGTGTTGACTG 60.304 47.826 0.00 0.00 0.00 3.51
2631 3089 3.312421 CGAGGATTTGTTGTGTTGACTGT 59.688 43.478 0.00 0.00 0.00 3.55
2632 3090 4.201910 CGAGGATTTGTTGTGTTGACTGTT 60.202 41.667 0.00 0.00 0.00 3.16
2633 3091 4.997565 AGGATTTGTTGTGTTGACTGTTG 58.002 39.130 0.00 0.00 0.00 3.33
2634 3092 4.704540 AGGATTTGTTGTGTTGACTGTTGA 59.295 37.500 0.00 0.00 0.00 3.18
2635 3093 4.798387 GGATTTGTTGTGTTGACTGTTGAC 59.202 41.667 0.00 0.00 0.00 3.18
2636 3094 3.463533 TTGTTGTGTTGACTGTTGACG 57.536 42.857 0.00 0.00 0.00 4.35
2802 3262 9.206870 GAATGAATTTCCATCTTTTTAGTTGCA 57.793 29.630 0.00 0.00 0.00 4.08
2805 3265 7.541783 TGAATTTCCATCTTTTTAGTTGCATCG 59.458 33.333 0.00 0.00 0.00 3.84
2808 3268 5.938322 TCCATCTTTTTAGTTGCATCGTTC 58.062 37.500 0.00 0.00 0.00 3.95
2810 3270 5.335583 CCATCTTTTTAGTTGCATCGTTCCA 60.336 40.000 0.00 0.00 0.00 3.53
2815 3276 5.759506 TTTAGTTGCATCGTTCCAGAAAA 57.240 34.783 0.00 0.00 0.00 2.29
2851 3312 8.084985 TGTCATTAGATATTTGGTGTCAGGTA 57.915 34.615 0.00 0.00 0.00 3.08
3003 3465 7.208777 CACAATGAGATATAGTTGAGCTGAGT 58.791 38.462 0.00 0.00 0.00 3.41
3025 3487 6.194235 AGTCAGTTCTCAGTTCTGATATCCT 58.806 40.000 0.00 0.00 39.77 3.24
3042 3504 6.312918 TGATATCCTGTTTCTTTCACTTACGC 59.687 38.462 0.00 0.00 0.00 4.42
3198 3661 6.206634 CCTAACCTCAAAAGTTACATCTTGCA 59.793 38.462 0.00 0.00 0.00 4.08
3202 3692 6.714810 ACCTCAAAAGTTACATCTTGCACATA 59.285 34.615 0.00 0.00 0.00 2.29
3203 3693 7.094634 ACCTCAAAAGTTACATCTTGCACATAG 60.095 37.037 0.00 0.00 0.00 2.23
3211 3701 8.850156 AGTTACATCTTGCACATAGTTTTTCTT 58.150 29.630 0.00 0.00 0.00 2.52
3214 3704 7.491682 ACATCTTGCACATAGTTTTTCTTTGT 58.508 30.769 0.00 0.00 38.50 2.83
3281 3775 3.330701 TCAATACTTTTCCTGAGGGCACT 59.669 43.478 0.00 0.00 0.00 4.40
3344 3838 2.040278 GGCATCCCCAGAATATGCACTA 59.960 50.000 8.59 0.00 46.18 2.74
3356 3850 1.200760 ATGCACTACCCACTGCCTCA 61.201 55.000 0.00 0.00 31.97 3.86
3594 4088 7.345192 GGCATGAACATATACTACAAAGTTCG 58.655 38.462 0.00 0.00 38.46 3.95
3595 4089 7.345192 GCATGAACATATACTACAAAGTTCGG 58.655 38.462 0.00 0.00 38.46 4.30
3616 4110 1.210478 ACGCTCTTGATGCCTATTGGT 59.790 47.619 0.00 0.00 35.27 3.67
3650 4144 7.758076 TCTGTCGAAAATAACTCGTGTTATGAT 59.242 33.333 20.23 13.42 45.54 2.45
3668 4162 9.506018 TGTTATGATGAACTATGGATGTATTGG 57.494 33.333 0.00 0.00 0.00 3.16
3741 4235 7.377766 TGAGACCAGTTTAATAAAGACATGC 57.622 36.000 0.00 0.00 0.00 4.06
3820 4315 7.174946 TGTTAGAGGTGTGATCATTTTTCTTCC 59.825 37.037 0.00 0.00 0.00 3.46
3922 5677 2.033424 GGTGCCAAGTCTTCTTTGTCAC 59.967 50.000 0.00 0.00 0.00 3.67
4188 6044 5.772521 ACCTAGCAACAACAAAATCACATC 58.227 37.500 0.00 0.00 0.00 3.06
4195 6051 6.363357 GCAACAACAAAATCACATCTAGGTTC 59.637 38.462 0.00 0.00 0.00 3.62
4215 6071 6.321690 AGGTTCGTAGACTATCTAGCAACAAT 59.678 38.462 8.23 0.00 34.32 2.71
4236 6092 2.845019 CAAGCATTGGAGCGAGTCA 58.155 52.632 0.00 0.00 43.94 3.41
4277 6133 2.362717 GTCCCTCCCTTATCGAAGTCAG 59.637 54.545 0.00 0.00 0.00 3.51
4281 6137 2.168521 CTCCCTTATCGAAGTCAGGCAA 59.831 50.000 0.00 0.00 0.00 4.52
4311 6167 5.952526 TGTAATAGACAGTCGTGAAGTCA 57.047 39.130 0.00 0.00 34.80 3.41
4330 6186 4.161565 AGTCATCGTGCTAAGGTCCAATAA 59.838 41.667 0.00 0.00 0.00 1.40
4349 6205 2.592102 AGACCAATGCACCAGAACAT 57.408 45.000 0.00 0.00 0.00 2.71
4356 6212 1.210155 GCACCAGAACATCAACCGC 59.790 57.895 0.00 0.00 0.00 5.68
4358 6214 0.888736 CACCAGAACATCAACCGCCA 60.889 55.000 0.00 0.00 0.00 5.69
4372 6228 0.948678 CCGCCACCGAAGAAAAGAAA 59.051 50.000 0.00 0.00 36.29 2.52
4510 6366 0.820074 CCCTCCGATGACGCTAGACT 60.820 60.000 0.00 0.00 38.29 3.24
4529 6385 6.857777 AGACTCAGAATCTTGTGAAAACAG 57.142 37.500 0.00 0.00 29.49 3.16
4559 6415 8.258007 TCGAAAAGTCATTATGGATTACAGAGT 58.742 33.333 0.00 0.00 0.00 3.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.293569 CGTTAGGGGAGTGATTTGTGATAAC 59.706 44.000 0.00 0.00 0.00 1.89
1 2 5.188163 TCGTTAGGGGAGTGATTTGTGATAA 59.812 40.000 0.00 0.00 0.00 1.75
2 3 4.712829 TCGTTAGGGGAGTGATTTGTGATA 59.287 41.667 0.00 0.00 0.00 2.15
3 4 3.517901 TCGTTAGGGGAGTGATTTGTGAT 59.482 43.478 0.00 0.00 0.00 3.06
4 5 2.901192 TCGTTAGGGGAGTGATTTGTGA 59.099 45.455 0.00 0.00 0.00 3.58
5 6 3.328382 TCGTTAGGGGAGTGATTTGTG 57.672 47.619 0.00 0.00 0.00 3.33
6 7 4.019681 TGAATCGTTAGGGGAGTGATTTGT 60.020 41.667 0.00 0.00 29.93 2.83
7 8 4.332819 GTGAATCGTTAGGGGAGTGATTTG 59.667 45.833 0.00 0.00 29.93 2.32
8 9 4.019681 TGTGAATCGTTAGGGGAGTGATTT 60.020 41.667 0.00 0.00 29.93 2.17
9 10 3.517901 TGTGAATCGTTAGGGGAGTGATT 59.482 43.478 0.00 0.00 32.30 2.57
10 11 3.104512 TGTGAATCGTTAGGGGAGTGAT 58.895 45.455 0.00 0.00 0.00 3.06
11 12 2.531771 TGTGAATCGTTAGGGGAGTGA 58.468 47.619 0.00 0.00 0.00 3.41
12 13 3.328382 TTGTGAATCGTTAGGGGAGTG 57.672 47.619 0.00 0.00 0.00 3.51
13 14 3.307480 CCTTTGTGAATCGTTAGGGGAGT 60.307 47.826 0.00 0.00 0.00 3.85
14 15 3.055385 TCCTTTGTGAATCGTTAGGGGAG 60.055 47.826 0.00 0.00 0.00 4.30
15 16 2.907696 TCCTTTGTGAATCGTTAGGGGA 59.092 45.455 0.00 0.00 0.00 4.81
16 17 3.270877 CTCCTTTGTGAATCGTTAGGGG 58.729 50.000 0.00 0.00 0.00 4.79
17 18 3.055385 TCCTCCTTTGTGAATCGTTAGGG 60.055 47.826 0.00 0.00 0.00 3.53
18 19 3.933332 GTCCTCCTTTGTGAATCGTTAGG 59.067 47.826 0.00 0.00 0.00 2.69
19 20 3.612860 CGTCCTCCTTTGTGAATCGTTAG 59.387 47.826 0.00 0.00 0.00 2.34
20 21 3.256383 TCGTCCTCCTTTGTGAATCGTTA 59.744 43.478 0.00 0.00 0.00 3.18
21 22 2.036733 TCGTCCTCCTTTGTGAATCGTT 59.963 45.455 0.00 0.00 0.00 3.85
22 23 1.616865 TCGTCCTCCTTTGTGAATCGT 59.383 47.619 0.00 0.00 0.00 3.73
23 24 2.363788 TCGTCCTCCTTTGTGAATCG 57.636 50.000 0.00 0.00 0.00 3.34
24 25 3.437049 CCTTTCGTCCTCCTTTGTGAATC 59.563 47.826 0.00 0.00 0.00 2.52
25 26 3.072476 TCCTTTCGTCCTCCTTTGTGAAT 59.928 43.478 0.00 0.00 0.00 2.57
26 27 2.436542 TCCTTTCGTCCTCCTTTGTGAA 59.563 45.455 0.00 0.00 0.00 3.18
27 28 2.043992 TCCTTTCGTCCTCCTTTGTGA 58.956 47.619 0.00 0.00 0.00 3.58
28 29 2.543777 TCCTTTCGTCCTCCTTTGTG 57.456 50.000 0.00 0.00 0.00 3.33
29 30 3.477530 CTTTCCTTTCGTCCTCCTTTGT 58.522 45.455 0.00 0.00 0.00 2.83
30 31 2.814336 CCTTTCCTTTCGTCCTCCTTTG 59.186 50.000 0.00 0.00 0.00 2.77
31 32 2.709397 TCCTTTCCTTTCGTCCTCCTTT 59.291 45.455 0.00 0.00 0.00 3.11
32 33 2.303311 CTCCTTTCCTTTCGTCCTCCTT 59.697 50.000 0.00 0.00 0.00 3.36
33 34 1.903183 CTCCTTTCCTTTCGTCCTCCT 59.097 52.381 0.00 0.00 0.00 3.69
34 35 1.676314 GCTCCTTTCCTTTCGTCCTCC 60.676 57.143 0.00 0.00 0.00 4.30
35 36 1.676314 GGCTCCTTTCCTTTCGTCCTC 60.676 57.143 0.00 0.00 0.00 3.71
36 37 0.325272 GGCTCCTTTCCTTTCGTCCT 59.675 55.000 0.00 0.00 0.00 3.85
37 38 1.019805 CGGCTCCTTTCCTTTCGTCC 61.020 60.000 0.00 0.00 0.00 4.79
38 39 0.037605 TCGGCTCCTTTCCTTTCGTC 60.038 55.000 0.00 0.00 0.00 4.20
39 40 0.037232 CTCGGCTCCTTTCCTTTCGT 60.037 55.000 0.00 0.00 0.00 3.85
40 41 0.037232 ACTCGGCTCCTTTCCTTTCG 60.037 55.000 0.00 0.00 0.00 3.46
41 42 1.002087 TCACTCGGCTCCTTTCCTTTC 59.998 52.381 0.00 0.00 0.00 2.62
42 43 1.056660 TCACTCGGCTCCTTTCCTTT 58.943 50.000 0.00 0.00 0.00 3.11
43 44 1.280457 ATCACTCGGCTCCTTTCCTT 58.720 50.000 0.00 0.00 0.00 3.36
44 45 2.035632 CTATCACTCGGCTCCTTTCCT 58.964 52.381 0.00 0.00 0.00 3.36
45 46 2.032620 TCTATCACTCGGCTCCTTTCC 58.967 52.381 0.00 0.00 0.00 3.13
46 47 2.952978 TCTCTATCACTCGGCTCCTTTC 59.047 50.000 0.00 0.00 0.00 2.62
47 48 3.019799 TCTCTATCACTCGGCTCCTTT 57.980 47.619 0.00 0.00 0.00 3.11
48 49 2.738587 TCTCTATCACTCGGCTCCTT 57.261 50.000 0.00 0.00 0.00 3.36
49 50 2.375174 AGATCTCTATCACTCGGCTCCT 59.625 50.000 0.00 0.00 34.28 3.69
50 51 2.487762 CAGATCTCTATCACTCGGCTCC 59.512 54.545 0.00 0.00 34.28 4.70
51 52 3.188460 GTCAGATCTCTATCACTCGGCTC 59.812 52.174 0.00 0.00 34.28 4.70
52 53 3.146066 GTCAGATCTCTATCACTCGGCT 58.854 50.000 0.00 0.00 34.28 5.52
53 54 2.095969 CGTCAGATCTCTATCACTCGGC 60.096 54.545 0.00 0.00 34.28 5.54
54 55 3.185594 GTCGTCAGATCTCTATCACTCGG 59.814 52.174 0.00 0.00 34.28 4.63
55 56 3.804873 TGTCGTCAGATCTCTATCACTCG 59.195 47.826 0.00 0.00 34.28 4.18
56 57 4.814234 AGTGTCGTCAGATCTCTATCACTC 59.186 45.833 0.00 0.00 34.28 3.51
57 58 4.776349 AGTGTCGTCAGATCTCTATCACT 58.224 43.478 0.00 1.99 34.28 3.41
58 59 4.572795 TGAGTGTCGTCAGATCTCTATCAC 59.427 45.833 0.00 0.00 34.28 3.06
59 60 4.572795 GTGAGTGTCGTCAGATCTCTATCA 59.427 45.833 0.00 0.00 34.28 2.15
60 61 4.318475 CGTGAGTGTCGTCAGATCTCTATC 60.318 50.000 0.00 0.00 34.10 2.08
61 62 3.558006 CGTGAGTGTCGTCAGATCTCTAT 59.442 47.826 0.00 0.00 34.10 1.98
62 63 2.930682 CGTGAGTGTCGTCAGATCTCTA 59.069 50.000 0.00 0.00 34.10 2.43
63 64 1.735018 CGTGAGTGTCGTCAGATCTCT 59.265 52.381 0.00 0.00 34.10 3.10
64 65 1.465387 ACGTGAGTGTCGTCAGATCTC 59.535 52.381 0.00 0.00 46.97 2.75
65 66 1.524848 ACGTGAGTGTCGTCAGATCT 58.475 50.000 0.00 0.00 46.97 2.75
83 84 2.445453 TTGCAAAACTGTCGAACGAC 57.555 45.000 18.48 18.48 44.77 4.34
84 85 3.473093 TTTTGCAAAACTGTCGAACGA 57.527 38.095 20.46 0.00 0.00 3.85
110 111 6.266323 ACGAAACATGTATCTAGCACACTAG 58.734 40.000 0.00 0.00 46.30 2.57
111 112 6.203808 ACGAAACATGTATCTAGCACACTA 57.796 37.500 0.00 0.00 0.00 2.74
112 113 5.073311 ACGAAACATGTATCTAGCACACT 57.927 39.130 0.00 0.00 0.00 3.55
113 114 5.347635 TGAACGAAACATGTATCTAGCACAC 59.652 40.000 0.00 0.00 0.00 3.82
114 115 5.474825 TGAACGAAACATGTATCTAGCACA 58.525 37.500 0.00 0.22 0.00 4.57
115 116 6.090898 ACTTGAACGAAACATGTATCTAGCAC 59.909 38.462 0.00 0.00 0.00 4.40
116 117 6.163476 ACTTGAACGAAACATGTATCTAGCA 58.837 36.000 0.00 0.00 0.00 3.49
117 118 6.648725 ACTTGAACGAAACATGTATCTAGC 57.351 37.500 0.00 0.00 0.00 3.42
133 134 4.873827 TCCTGCCGTTCATATTACTTGAAC 59.126 41.667 6.50 6.50 46.04 3.18
134 135 5.092554 TCCTGCCGTTCATATTACTTGAA 57.907 39.130 0.00 0.00 0.00 2.69
135 136 4.746535 TCCTGCCGTTCATATTACTTGA 57.253 40.909 0.00 0.00 0.00 3.02
136 137 4.816385 ACATCCTGCCGTTCATATTACTTG 59.184 41.667 0.00 0.00 0.00 3.16
137 138 4.816385 CACATCCTGCCGTTCATATTACTT 59.184 41.667 0.00 0.00 0.00 2.24
138 139 4.141711 ACACATCCTGCCGTTCATATTACT 60.142 41.667 0.00 0.00 0.00 2.24
139 140 4.127171 ACACATCCTGCCGTTCATATTAC 58.873 43.478 0.00 0.00 0.00 1.89
140 141 4.415881 ACACATCCTGCCGTTCATATTA 57.584 40.909 0.00 0.00 0.00 0.98
141 142 3.281727 ACACATCCTGCCGTTCATATT 57.718 42.857 0.00 0.00 0.00 1.28
142 143 3.281727 AACACATCCTGCCGTTCATAT 57.718 42.857 0.00 0.00 0.00 1.78
143 144 2.779755 AACACATCCTGCCGTTCATA 57.220 45.000 0.00 0.00 0.00 2.15
144 145 1.909700 AAACACATCCTGCCGTTCAT 58.090 45.000 0.00 0.00 0.00 2.57
145 146 2.552599 TAAACACATCCTGCCGTTCA 57.447 45.000 0.00 0.00 0.00 3.18
146 147 4.434713 AATTAAACACATCCTGCCGTTC 57.565 40.909 0.00 0.00 0.00 3.95
147 148 4.864704 AAATTAAACACATCCTGCCGTT 57.135 36.364 0.00 0.00 0.00 4.44
148 149 5.968528 TTAAATTAAACACATCCTGCCGT 57.031 34.783 0.00 0.00 0.00 5.68
149 150 7.543868 TCAAATTAAATTAAACACATCCTGCCG 59.456 33.333 0.00 0.00 0.00 5.69
150 151 8.770438 TCAAATTAAATTAAACACATCCTGCC 57.230 30.769 0.00 0.00 0.00 4.85
153 154 9.801873 CCGATCAAATTAAATTAAACACATCCT 57.198 29.630 0.00 0.00 0.00 3.24
154 155 9.796120 TCCGATCAAATTAAATTAAACACATCC 57.204 29.630 0.00 0.00 0.00 3.51
156 157 9.801873 CCTCCGATCAAATTAAATTAAACACAT 57.198 29.630 0.00 0.00 0.00 3.21
157 158 8.247562 CCCTCCGATCAAATTAAATTAAACACA 58.752 33.333 0.00 0.00 0.00 3.72
158 159 7.222031 GCCCTCCGATCAAATTAAATTAAACAC 59.778 37.037 0.00 0.00 0.00 3.32
159 160 7.262048 GCCCTCCGATCAAATTAAATTAAACA 58.738 34.615 0.00 0.00 0.00 2.83
160 161 6.700081 GGCCCTCCGATCAAATTAAATTAAAC 59.300 38.462 0.00 0.00 0.00 2.01
161 162 6.183360 GGGCCCTCCGATCAAATTAAATTAAA 60.183 38.462 17.04 0.00 0.00 1.52
162 163 5.303333 GGGCCCTCCGATCAAATTAAATTAA 59.697 40.000 17.04 0.00 0.00 1.40
163 164 4.830600 GGGCCCTCCGATCAAATTAAATTA 59.169 41.667 17.04 0.00 0.00 1.40
164 165 3.641436 GGGCCCTCCGATCAAATTAAATT 59.359 43.478 17.04 0.00 0.00 1.82
165 166 3.117131 AGGGCCCTCCGATCAAATTAAAT 60.117 43.478 22.28 0.00 41.52 1.40
166 167 2.243736 AGGGCCCTCCGATCAAATTAAA 59.756 45.455 22.28 0.00 41.52 1.52
167 168 1.850345 AGGGCCCTCCGATCAAATTAA 59.150 47.619 22.28 0.00 41.52 1.40
168 169 1.142870 CAGGGCCCTCCGATCAAATTA 59.857 52.381 25.77 0.00 41.52 1.40
169 170 0.106519 CAGGGCCCTCCGATCAAATT 60.107 55.000 25.77 0.00 41.52 1.82
170 171 0.988145 TCAGGGCCCTCCGATCAAAT 60.988 55.000 25.77 0.00 41.52 2.32
171 172 0.988145 ATCAGGGCCCTCCGATCAAA 60.988 55.000 25.77 0.00 41.52 2.69
172 173 1.384502 ATCAGGGCCCTCCGATCAA 60.385 57.895 25.77 1.34 41.52 2.57
173 174 1.838846 GATCAGGGCCCTCCGATCA 60.839 63.158 32.86 13.07 41.18 2.92
174 175 1.197430 ATGATCAGGGCCCTCCGATC 61.197 60.000 31.89 31.89 41.52 3.69
175 176 0.769776 AATGATCAGGGCCCTCCGAT 60.770 55.000 25.77 23.35 41.52 4.18
176 177 1.384502 AATGATCAGGGCCCTCCGA 60.385 57.895 25.77 18.98 41.52 4.55
177 178 1.072159 GAATGATCAGGGCCCTCCG 59.928 63.158 25.77 13.01 41.52 4.63
178 179 1.458045 GGAATGATCAGGGCCCTCC 59.542 63.158 25.77 15.60 0.00 4.30
179 180 1.072159 CGGAATGATCAGGGCCCTC 59.928 63.158 25.77 12.73 0.00 4.30
180 181 1.694169 ACGGAATGATCAGGGCCCT 60.694 57.895 22.28 22.28 0.00 5.19
181 182 1.526917 CACGGAATGATCAGGGCCC 60.527 63.158 16.46 16.46 0.00 5.80
182 183 0.107214 TTCACGGAATGATCAGGGCC 60.107 55.000 0.09 0.00 37.11 5.80
183 184 1.017387 GTTCACGGAATGATCAGGGC 58.983 55.000 0.09 0.00 37.11 5.19
184 185 2.283298 CTGTTCACGGAATGATCAGGG 58.717 52.381 0.09 0.00 45.64 4.45
187 188 4.133820 ACAAACTGTTCACGGAATGATCA 58.866 39.130 0.00 0.00 37.11 2.92
188 189 4.749245 ACAAACTGTTCACGGAATGATC 57.251 40.909 0.00 0.00 37.11 2.92
189 190 4.338118 ACAACAAACTGTTCACGGAATGAT 59.662 37.500 0.00 0.00 38.77 2.45
190 191 3.692101 ACAACAAACTGTTCACGGAATGA 59.308 39.130 0.00 0.00 38.77 2.57
191 192 3.790820 CACAACAAACTGTTCACGGAATG 59.209 43.478 0.00 0.00 38.77 2.67
192 193 3.442273 ACACAACAAACTGTTCACGGAAT 59.558 39.130 0.00 0.00 38.77 3.01
193 194 2.814919 ACACAACAAACTGTTCACGGAA 59.185 40.909 0.00 0.00 38.77 4.30
194 195 2.160615 CACACAACAAACTGTTCACGGA 59.839 45.455 0.00 0.00 38.77 4.69
195 196 2.514902 CACACAACAAACTGTTCACGG 58.485 47.619 0.00 0.00 38.77 4.94
196 197 2.160615 TCCACACAACAAACTGTTCACG 59.839 45.455 0.00 0.00 38.77 4.35
197 198 3.840890 TCCACACAACAAACTGTTCAC 57.159 42.857 0.00 0.00 38.77 3.18
198 199 5.398603 AAATCCACACAACAAACTGTTCA 57.601 34.783 0.00 0.00 38.77 3.18
199 200 6.978080 ACATAAATCCACACAACAAACTGTTC 59.022 34.615 0.00 0.00 38.77 3.18
200 201 6.872920 ACATAAATCCACACAACAAACTGTT 58.127 32.000 0.00 0.00 42.08 3.16
201 202 6.463995 ACATAAATCCACACAACAAACTGT 57.536 33.333 0.00 0.00 0.00 3.55
202 203 7.277539 ACAAACATAAATCCACACAACAAACTG 59.722 33.333 0.00 0.00 0.00 3.16
203 204 7.327214 ACAAACATAAATCCACACAACAAACT 58.673 30.769 0.00 0.00 0.00 2.66
204 205 7.532682 ACAAACATAAATCCACACAACAAAC 57.467 32.000 0.00 0.00 0.00 2.93
205 206 8.037758 AGAACAAACATAAATCCACACAACAAA 58.962 29.630 0.00 0.00 0.00 2.83
206 207 7.551585 AGAACAAACATAAATCCACACAACAA 58.448 30.769 0.00 0.00 0.00 2.83
207 208 7.106439 AGAACAAACATAAATCCACACAACA 57.894 32.000 0.00 0.00 0.00 3.33
208 209 9.180678 CTAAGAACAAACATAAATCCACACAAC 57.819 33.333 0.00 0.00 0.00 3.32
209 210 8.908903 ACTAAGAACAAACATAAATCCACACAA 58.091 29.630 0.00 0.00 0.00 3.33
210 211 8.349245 CACTAAGAACAAACATAAATCCACACA 58.651 33.333 0.00 0.00 0.00 3.72
211 212 8.349983 ACACTAAGAACAAACATAAATCCACAC 58.650 33.333 0.00 0.00 0.00 3.82
212 213 8.458573 ACACTAAGAACAAACATAAATCCACA 57.541 30.769 0.00 0.00 0.00 4.17
218 219 9.278978 TGCATCTACACTAAGAACAAACATAAA 57.721 29.630 0.00 0.00 0.00 1.40
219 220 8.840833 TGCATCTACACTAAGAACAAACATAA 57.159 30.769 0.00 0.00 0.00 1.90
220 221 7.064609 GCTGCATCTACACTAAGAACAAACATA 59.935 37.037 0.00 0.00 0.00 2.29
221 222 6.128172 GCTGCATCTACACTAAGAACAAACAT 60.128 38.462 0.00 0.00 0.00 2.71
222 223 5.179368 GCTGCATCTACACTAAGAACAAACA 59.821 40.000 0.00 0.00 0.00 2.83
223 224 5.622378 GCTGCATCTACACTAAGAACAAAC 58.378 41.667 0.00 0.00 0.00 2.93
224 225 4.388773 CGCTGCATCTACACTAAGAACAAA 59.611 41.667 0.00 0.00 0.00 2.83
225 226 3.926527 CGCTGCATCTACACTAAGAACAA 59.073 43.478 0.00 0.00 0.00 2.83
226 227 3.192633 TCGCTGCATCTACACTAAGAACA 59.807 43.478 0.00 0.00 0.00 3.18
227 228 3.770666 TCGCTGCATCTACACTAAGAAC 58.229 45.455 0.00 0.00 0.00 3.01
228 229 4.450082 TTCGCTGCATCTACACTAAGAA 57.550 40.909 0.00 0.00 0.00 2.52
229 230 4.450082 TTTCGCTGCATCTACACTAAGA 57.550 40.909 0.00 0.00 0.00 2.10
230 231 5.530519 TTTTTCGCTGCATCTACACTAAG 57.469 39.130 0.00 0.00 0.00 2.18
646 647 4.955925 ATCCAGACGCGAATAGATAGAG 57.044 45.455 15.93 0.00 0.00 2.43
656 657 0.806868 ACGAAGTTATCCAGACGCGA 59.193 50.000 15.93 0.00 37.78 5.87
730 731 4.508662 GGTGAGAAAGTGGATAAGACAGG 58.491 47.826 0.00 0.00 0.00 4.00
878 936 1.032014 TTGCAAAAGAGACCTGGTGC 58.968 50.000 2.82 0.00 35.01 5.01
882 940 2.611224 GGGCAATTGCAAAAGAGACCTG 60.611 50.000 30.32 0.00 44.36 4.00
973 1031 0.458260 GGCTCTCTCCTCTTTCGGTC 59.542 60.000 0.00 0.00 0.00 4.79
1357 1415 5.184864 ACAAATCCCGACAAGAAATGCATAA 59.815 36.000 0.00 0.00 0.00 1.90
1358 1416 4.704540 ACAAATCCCGACAAGAAATGCATA 59.295 37.500 0.00 0.00 0.00 3.14
1370 1428 1.076332 CCAACTCGACAAATCCCGAC 58.924 55.000 0.00 0.00 0.00 4.79
1398 1456 1.135689 CATTTGCCCTCGAGAAAACCG 60.136 52.381 15.71 3.56 0.00 4.44
1409 1476 6.268387 TCAGAAGAAAGAAAATCATTTGCCCT 59.732 34.615 0.00 0.00 0.00 5.19
1412 1479 7.955864 GCAATCAGAAGAAAGAAAATCATTTGC 59.044 33.333 0.00 0.00 0.00 3.68
1416 1483 9.204570 CAAAGCAATCAGAAGAAAGAAAATCAT 57.795 29.630 0.00 0.00 0.00 2.45
1428 1495 1.167851 TCGCCCAAAGCAATCAGAAG 58.832 50.000 0.00 0.00 44.04 2.85
1492 1559 2.569853 TGGTACCATCAAATCAGGACGT 59.430 45.455 11.60 0.00 0.00 4.34
1496 1563 5.009631 TCAACTTGGTACCATCAAATCAGG 58.990 41.667 17.17 0.00 0.00 3.86
1515 1582 6.590234 ATTCCTAAACCCTCACAAATCAAC 57.410 37.500 0.00 0.00 0.00 3.18
1564 1632 0.323360 GCATCCCTGTAAGTGCCCAA 60.323 55.000 0.00 0.00 0.00 4.12
1570 1650 3.622455 GCCTTGTAAGCATCCCTGTAAGT 60.622 47.826 0.00 0.00 0.00 2.24
1575 1655 1.838112 TTGCCTTGTAAGCATCCCTG 58.162 50.000 0.00 0.00 40.59 4.45
1589 1669 7.713942 CGGGTAGAGTATTTTACTTATTTGCCT 59.286 37.037 0.00 0.00 39.59 4.75
1590 1670 7.519488 GCGGGTAGAGTATTTTACTTATTTGCC 60.519 40.741 0.00 0.00 39.59 4.52
1591 1671 7.011669 TGCGGGTAGAGTATTTTACTTATTTGC 59.988 37.037 0.00 0.00 39.59 3.68
1592 1672 8.333186 GTGCGGGTAGAGTATTTTACTTATTTG 58.667 37.037 0.00 0.00 39.59 2.32
1596 1676 6.780457 AGTGCGGGTAGAGTATTTTACTTA 57.220 37.500 0.00 0.00 39.59 2.24
1605 1685 2.795231 AGTGTAGTGCGGGTAGAGTA 57.205 50.000 0.00 0.00 0.00 2.59
1607 1687 4.820716 AGTTATAGTGTAGTGCGGGTAGAG 59.179 45.833 0.00 0.00 0.00 2.43
1608 1688 4.577693 CAGTTATAGTGTAGTGCGGGTAGA 59.422 45.833 0.00 0.00 0.00 2.59
1609 1689 4.337555 ACAGTTATAGTGTAGTGCGGGTAG 59.662 45.833 0.00 0.00 28.20 3.18
1610 1690 4.272489 ACAGTTATAGTGTAGTGCGGGTA 58.728 43.478 0.00 0.00 28.20 3.69
1611 1691 3.094572 ACAGTTATAGTGTAGTGCGGGT 58.905 45.455 0.00 0.00 28.20 5.28
1613 1693 6.315091 AGATACAGTTATAGTGTAGTGCGG 57.685 41.667 0.00 0.00 37.43 5.69
1614 1694 8.085720 AGTAGATACAGTTATAGTGTAGTGCG 57.914 38.462 0.00 0.00 37.43 5.34
1625 1742 8.344098 GCGAAGTACTGAAGTAGATACAGTTAT 58.656 37.037 0.00 0.00 43.27 1.89
1693 1975 6.949352 AATTGACCCATCACATACAAGATC 57.051 37.500 0.00 0.00 33.38 2.75
1741 2023 8.733458 TGATTTGATACTTCTGGAGTGAAAATG 58.267 33.333 0.00 0.00 39.48 2.32
1798 2080 8.306761 GGTCCTTCAAACTTCATGACATATTTT 58.693 33.333 0.00 0.00 0.00 1.82
1840 2261 6.308282 GTGATAACTGAAGAACGGAGTAACAG 59.692 42.308 0.00 0.00 45.00 3.16
1947 2379 9.798994 GGATAGAAGAACGTTTAGATCACTAAA 57.201 33.333 0.46 0.00 43.52 1.85
1980 2412 6.711194 GCCTTCATTTATTTACTACTCCCTCC 59.289 42.308 0.00 0.00 0.00 4.30
2087 2537 4.276183 AGTTGTACAGATGCGACGATATCT 59.724 41.667 0.00 4.04 34.09 1.98
2097 2547 2.234908 AGGGACAGAGTTGTACAGATGC 59.765 50.000 0.00 0.00 40.14 3.91
2152 2602 5.921976 CACAACATTTGTACTTGATGCACAT 59.078 36.000 0.00 0.00 43.23 3.21
2465 2921 4.325028 ACAACTGATTGAAGCAATGCAA 57.675 36.364 8.35 0.00 39.30 4.08
2508 2964 5.239525 AGCCAACAACAGAGAAATAACAGTC 59.760 40.000 0.00 0.00 0.00 3.51
2549 3006 7.968405 TCTCTTTTCAAAAGCAACTTCACTAAC 59.032 33.333 4.87 0.00 0.00 2.34
2584 3041 6.389091 GTGATAACAGGTGCATTCAATTTGA 58.611 36.000 0.00 0.00 0.00 2.69
2609 3067 3.312421 ACAGTCAACACAACAAATCCTCG 59.688 43.478 0.00 0.00 0.00 4.63
2629 3087 4.689071 ACTAACACAGAATGACGTCAACA 58.311 39.130 24.13 0.00 39.69 3.33
2630 3088 4.743151 TGACTAACACAGAATGACGTCAAC 59.257 41.667 24.13 18.81 39.69 3.18
2631 3089 4.939271 TGACTAACACAGAATGACGTCAA 58.061 39.130 24.13 6.23 39.69 3.18
2632 3090 4.577834 TGACTAACACAGAATGACGTCA 57.422 40.909 22.48 22.48 39.69 4.35
2633 3091 5.161358 TGATGACTAACACAGAATGACGTC 58.839 41.667 9.11 9.11 39.69 4.34
2634 3092 5.134202 TGATGACTAACACAGAATGACGT 57.866 39.130 0.00 0.00 39.69 4.34
2635 3093 6.311200 TGATTGATGACTAACACAGAATGACG 59.689 38.462 0.00 0.00 39.69 4.35
2636 3094 7.601073 TGATTGATGACTAACACAGAATGAC 57.399 36.000 0.00 0.00 39.69 3.06
2802 3262 2.228822 GTGCCATGTTTTCTGGAACGAT 59.771 45.455 0.00 0.00 32.64 3.73
2805 3265 1.963515 AGGTGCCATGTTTTCTGGAAC 59.036 47.619 0.00 0.00 41.07 3.62
2808 3268 1.688197 ACAAGGTGCCATGTTTTCTGG 59.312 47.619 0.00 0.00 36.81 3.86
2810 3270 2.665165 TGACAAGGTGCCATGTTTTCT 58.335 42.857 0.45 0.00 0.00 2.52
2815 3276 3.719268 TCTAATGACAAGGTGCCATGT 57.281 42.857 0.00 0.00 0.00 3.21
2989 3451 4.769488 TGAGAACTGACTCAGCTCAACTAT 59.231 41.667 11.25 0.00 41.21 2.12
3003 3465 5.954752 ACAGGATATCAGAACTGAGAACTGA 59.045 40.000 25.60 13.18 43.61 3.41
3202 3692 8.908903 TGGTCATACAATACACAAAGAAAAACT 58.091 29.630 0.00 0.00 0.00 2.66
3203 3693 9.691362 ATGGTCATACAATACACAAAGAAAAAC 57.309 29.630 0.00 0.00 0.00 2.43
3232 3726 8.530311 CCAGAGCTGTATCACAAGATAAGATAT 58.470 37.037 0.00 0.00 38.41 1.63
3239 3733 3.771479 TGACCAGAGCTGTATCACAAGAT 59.229 43.478 0.00 0.00 38.29 2.40
3344 3838 1.151450 CAAAGGTGAGGCAGTGGGT 59.849 57.895 0.00 0.00 0.00 4.51
3356 3850 1.210967 TCCACAAAGTCCGACAAAGGT 59.789 47.619 0.40 0.00 0.00 3.50
3464 3958 1.944896 TAGAGGATGAGCCCGGTCCA 61.945 60.000 10.44 0.71 37.37 4.02
3594 4088 1.869767 CAATAGGCATCAAGAGCGTCC 59.130 52.381 0.00 0.00 0.00 4.79
3595 4089 1.869767 CCAATAGGCATCAAGAGCGTC 59.130 52.381 0.00 0.00 0.00 5.19
3616 4110 7.816031 ACGAGTTATTTTCGACAGATTTAAGGA 59.184 33.333 1.31 0.00 40.36 3.36
3650 4144 5.368145 GCTGTCCAATACATCCATAGTTCA 58.632 41.667 0.00 0.00 37.50 3.18
3893 5648 4.844884 AGAAGACTTGGCACCCTTATAAC 58.155 43.478 0.00 0.00 0.00 1.89
3895 5650 5.222048 ACAAAGAAGACTTGGCACCCTTATA 60.222 40.000 0.00 0.00 36.39 0.98
3896 5651 4.082125 CAAAGAAGACTTGGCACCCTTAT 58.918 43.478 0.00 0.00 36.39 1.73
3922 5677 2.235891 AGTTTTTAAGGGGTTGCTCCG 58.764 47.619 0.00 0.00 37.00 4.63
4188 6044 6.482641 TGTTGCTAGATAGTCTACGAACCTAG 59.517 42.308 0.00 0.00 0.00 3.02
4195 6051 8.851960 TTGTAATTGTTGCTAGATAGTCTACG 57.148 34.615 0.00 0.00 0.00 3.51
4215 6071 2.289382 TGACTCGCTCCAATGCTTGTAA 60.289 45.455 0.00 0.00 0.00 2.41
4277 6133 7.060633 CGACTGTCTATTACAACAAATTTTGCC 59.939 37.037 9.04 0.00 37.74 4.52
4281 6137 8.373048 TCACGACTGTCTATTACAACAAATTT 57.627 30.769 6.21 0.00 37.74 1.82
4311 6167 4.694339 GTCTTATTGGACCTTAGCACGAT 58.306 43.478 0.00 0.00 0.00 3.73
4330 6186 2.224843 TGATGTTCTGGTGCATTGGTCT 60.225 45.455 0.00 0.00 0.00 3.85
4341 6197 1.586154 GGTGGCGGTTGATGTTCTGG 61.586 60.000 0.00 0.00 0.00 3.86
4349 6205 0.464013 TTTTCTTCGGTGGCGGTTGA 60.464 50.000 0.00 0.00 0.00 3.18
4356 6212 2.610374 TCACGTTTCTTTTCTTCGGTGG 59.390 45.455 0.00 0.00 0.00 4.61
4358 6214 4.318546 CGATTCACGTTTCTTTTCTTCGGT 60.319 41.667 0.00 0.00 37.22 4.69
4372 6228 1.191535 TTGGATCCTCCGATTCACGT 58.808 50.000 14.23 0.00 40.17 4.49
4504 6360 7.655328 ACTGTTTTCACAAGATTCTGAGTCTAG 59.345 37.037 2.92 0.00 30.36 2.43
4510 6366 5.192927 ACCACTGTTTTCACAAGATTCTGA 58.807 37.500 0.00 0.00 30.36 3.27
4529 6385 6.436843 AATCCATAATGACTTTTCGACCAC 57.563 37.500 0.00 0.00 0.00 4.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.