Multiple sequence alignment - TraesCS7B01G288100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G288100 chr7B 100.000 2413 0 0 485 2897 524046659 524049071 0.000000e+00 4457
1 TraesCS7B01G288100 chr7B 100.000 95 0 0 1 95 524046175 524046269 2.970000e-40 176
2 TraesCS7B01G288100 chr7D 89.639 2191 121 51 756 2897 495823592 495825725 0.000000e+00 2691
3 TraesCS7B01G288100 chr7A 81.710 1766 132 81 1218 2897 561591622 561593282 0.000000e+00 1295
4 TraesCS7B01G288100 chr7A 88.654 379 23 13 756 1119 561591200 561591573 7.370000e-121 444
5 TraesCS7B01G288100 chr5B 84.142 536 62 14 2367 2897 144234637 144234120 5.570000e-137 497
6 TraesCS7B01G288100 chr5B 78.931 655 84 31 1674 2304 144235363 144234739 2.090000e-106 396
7 TraesCS7B01G288100 chr2B 81.162 568 69 21 1759 2304 191536495 191535944 3.450000e-114 422
8 TraesCS7B01G288100 chr2B 79.836 610 73 27 2292 2883 191535923 191535346 1.620000e-107 399
9 TraesCS7B01G288100 chr5D 81.193 436 49 15 1803 2220 352938167 352937747 1.300000e-83 320


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G288100 chr7B 524046175 524049071 2896 False 2316.5 4457 100.0000 1 2897 2 chr7B.!!$F1 2896
1 TraesCS7B01G288100 chr7D 495823592 495825725 2133 False 2691.0 2691 89.6390 756 2897 1 chr7D.!!$F1 2141
2 TraesCS7B01G288100 chr7A 561591200 561593282 2082 False 869.5 1295 85.1820 756 2897 2 chr7A.!!$F1 2141
3 TraesCS7B01G288100 chr5B 144234120 144235363 1243 True 446.5 497 81.5365 1674 2897 2 chr5B.!!$R1 1223
4 TraesCS7B01G288100 chr2B 191535346 191536495 1149 True 410.5 422 80.4990 1759 2883 2 chr2B.!!$R1 1124

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 805 0.034089 CACCACCCTGGAAAGATCCC 60.034 60.0 0.0 0.0 45.95 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2160 2306 1.067495 CCCGAAGAAGACTCGAAAGCT 60.067 52.381 0.0 0.0 0.0 3.74 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 2.385315 CATCGCATACAGTGAGGTACG 58.615 52.381 0.00 0.00 40.68 3.67
21 22 0.099968 TCGCATACAGTGAGGTACGC 59.900 55.000 0.00 0.00 31.89 4.42
22 23 0.179148 CGCATACAGTGAGGTACGCA 60.179 55.000 0.00 0.00 32.34 5.24
46 47 4.547367 CGCCCCTCCCACGAATCC 62.547 72.222 0.00 0.00 0.00 3.01
47 48 3.090532 GCCCCTCCCACGAATCCT 61.091 66.667 0.00 0.00 0.00 3.24
48 49 2.911143 CCCCTCCCACGAATCCTG 59.089 66.667 0.00 0.00 0.00 3.86
49 50 2.746375 CCCCTCCCACGAATCCTGG 61.746 68.421 0.00 0.00 0.00 4.45
54 55 1.830145 CCCACGAATCCTGGGTAGG 59.170 63.158 8.88 0.00 43.32 3.18
63 64 3.426903 CCTGGGTAGGATGCCATTG 57.573 57.895 0.00 0.00 45.88 2.82
64 65 0.825010 CCTGGGTAGGATGCCATTGC 60.825 60.000 0.00 0.00 45.88 3.56
65 66 0.825010 CTGGGTAGGATGCCATTGCC 60.825 60.000 0.00 0.00 45.88 4.52
66 67 1.229927 GGGTAGGATGCCATTGCCA 59.770 57.895 0.00 0.00 45.88 4.92
67 68 0.396974 GGGTAGGATGCCATTGCCAA 60.397 55.000 0.00 0.00 45.88 4.52
68 69 0.746659 GGTAGGATGCCATTGCCAAC 59.253 55.000 0.00 0.00 42.29 3.77
69 70 1.686115 GGTAGGATGCCATTGCCAACT 60.686 52.381 0.00 0.00 42.29 3.16
70 71 1.678101 GTAGGATGCCATTGCCAACTC 59.322 52.381 0.00 0.00 36.33 3.01
71 72 0.040058 AGGATGCCATTGCCAACTCA 59.960 50.000 0.00 0.00 36.33 3.41
72 73 0.896923 GGATGCCATTGCCAACTCAA 59.103 50.000 0.00 0.00 36.33 3.02
73 74 1.134907 GGATGCCATTGCCAACTCAAG 60.135 52.381 0.00 0.00 36.33 3.02
74 75 1.820519 GATGCCATTGCCAACTCAAGA 59.179 47.619 0.00 0.00 36.33 3.02
75 76 1.702182 TGCCATTGCCAACTCAAGAA 58.298 45.000 0.00 0.00 36.33 2.52
76 77 1.614903 TGCCATTGCCAACTCAAGAAG 59.385 47.619 0.00 0.00 36.33 2.85
77 78 1.888512 GCCATTGCCAACTCAAGAAGA 59.111 47.619 0.00 0.00 0.00 2.87
78 79 2.297033 GCCATTGCCAACTCAAGAAGAA 59.703 45.455 0.00 0.00 0.00 2.52
79 80 3.613432 GCCATTGCCAACTCAAGAAGAAG 60.613 47.826 0.00 0.00 0.00 2.85
80 81 3.571401 CCATTGCCAACTCAAGAAGAAGT 59.429 43.478 0.00 0.00 0.00 3.01
81 82 4.038402 CCATTGCCAACTCAAGAAGAAGTT 59.962 41.667 0.00 0.00 0.00 2.66
82 83 4.637483 TTGCCAACTCAAGAAGAAGTTG 57.363 40.909 8.00 8.00 40.68 3.16
83 84 3.620488 TGCCAACTCAAGAAGAAGTTGT 58.380 40.909 12.65 0.00 39.73 3.32
84 85 3.378112 TGCCAACTCAAGAAGAAGTTGTG 59.622 43.478 12.65 6.84 39.73 3.33
85 86 3.243201 GCCAACTCAAGAAGAAGTTGTGG 60.243 47.826 12.65 2.60 39.73 4.17
86 87 3.316308 CCAACTCAAGAAGAAGTTGTGGG 59.684 47.826 12.65 0.00 39.73 4.61
87 88 3.214696 ACTCAAGAAGAAGTTGTGGGG 57.785 47.619 0.00 0.00 0.00 4.96
88 89 2.158608 ACTCAAGAAGAAGTTGTGGGGG 60.159 50.000 0.00 0.00 0.00 5.40
504 505 3.370840 CAATTCCACATTCCCTCTCCA 57.629 47.619 0.00 0.00 0.00 3.86
505 506 3.907221 CAATTCCACATTCCCTCTCCAT 58.093 45.455 0.00 0.00 0.00 3.41
506 507 4.284178 CAATTCCACATTCCCTCTCCATT 58.716 43.478 0.00 0.00 0.00 3.16
507 508 4.614967 ATTCCACATTCCCTCTCCATTT 57.385 40.909 0.00 0.00 0.00 2.32
508 509 4.402616 TTCCACATTCCCTCTCCATTTT 57.597 40.909 0.00 0.00 0.00 1.82
509 510 3.968265 TCCACATTCCCTCTCCATTTTC 58.032 45.455 0.00 0.00 0.00 2.29
510 511 3.333381 TCCACATTCCCTCTCCATTTTCA 59.667 43.478 0.00 0.00 0.00 2.69
511 512 4.017222 TCCACATTCCCTCTCCATTTTCAT 60.017 41.667 0.00 0.00 0.00 2.57
512 513 4.713321 CCACATTCCCTCTCCATTTTCATT 59.287 41.667 0.00 0.00 0.00 2.57
513 514 5.188359 CCACATTCCCTCTCCATTTTCATTT 59.812 40.000 0.00 0.00 0.00 2.32
514 515 6.296030 CCACATTCCCTCTCCATTTTCATTTT 60.296 38.462 0.00 0.00 0.00 1.82
515 516 6.815142 CACATTCCCTCTCCATTTTCATTTTC 59.185 38.462 0.00 0.00 0.00 2.29
516 517 6.070596 ACATTCCCTCTCCATTTTCATTTTCC 60.071 38.462 0.00 0.00 0.00 3.13
517 518 4.352893 TCCCTCTCCATTTTCATTTTCCC 58.647 43.478 0.00 0.00 0.00 3.97
518 519 4.095946 CCCTCTCCATTTTCATTTTCCCA 58.904 43.478 0.00 0.00 0.00 4.37
519 520 4.081476 CCCTCTCCATTTTCATTTTCCCAC 60.081 45.833 0.00 0.00 0.00 4.61
520 521 4.380867 CCTCTCCATTTTCATTTTCCCACG 60.381 45.833 0.00 0.00 0.00 4.94
521 522 3.056891 TCTCCATTTTCATTTTCCCACGC 60.057 43.478 0.00 0.00 0.00 5.34
522 523 2.630098 TCCATTTTCATTTTCCCACGCA 59.370 40.909 0.00 0.00 0.00 5.24
523 524 3.070159 TCCATTTTCATTTTCCCACGCAA 59.930 39.130 0.00 0.00 0.00 4.85
524 525 3.812053 CCATTTTCATTTTCCCACGCAAA 59.188 39.130 0.00 0.00 0.00 3.68
525 526 4.274459 CCATTTTCATTTTCCCACGCAAAA 59.726 37.500 0.00 0.00 0.00 2.44
526 527 5.220931 CCATTTTCATTTTCCCACGCAAAAA 60.221 36.000 0.00 0.00 0.00 1.94
527 528 4.866682 TTTCATTTTCCCACGCAAAAAC 57.133 36.364 0.00 0.00 0.00 2.43
528 529 2.827652 TCATTTTCCCACGCAAAAACC 58.172 42.857 0.00 0.00 0.00 3.27
529 530 2.168521 TCATTTTCCCACGCAAAAACCA 59.831 40.909 0.00 0.00 0.00 3.67
530 531 2.762535 TTTTCCCACGCAAAAACCAA 57.237 40.000 0.00 0.00 0.00 3.67
531 532 2.762535 TTTCCCACGCAAAAACCAAA 57.237 40.000 0.00 0.00 0.00 3.28
532 533 2.762535 TTCCCACGCAAAAACCAAAA 57.237 40.000 0.00 0.00 0.00 2.44
533 534 2.762535 TCCCACGCAAAAACCAAAAA 57.237 40.000 0.00 0.00 0.00 1.94
534 535 2.347731 TCCCACGCAAAAACCAAAAAC 58.652 42.857 0.00 0.00 0.00 2.43
535 536 2.076863 CCCACGCAAAAACCAAAAACA 58.923 42.857 0.00 0.00 0.00 2.83
536 537 2.484264 CCCACGCAAAAACCAAAAACAA 59.516 40.909 0.00 0.00 0.00 2.83
537 538 3.058224 CCCACGCAAAAACCAAAAACAAA 60.058 39.130 0.00 0.00 0.00 2.83
538 539 4.379918 CCCACGCAAAAACCAAAAACAAAT 60.380 37.500 0.00 0.00 0.00 2.32
539 540 4.790651 CCACGCAAAAACCAAAAACAAATC 59.209 37.500 0.00 0.00 0.00 2.17
540 541 5.385617 CACGCAAAAACCAAAAACAAATCA 58.614 33.333 0.00 0.00 0.00 2.57
541 542 5.282544 CACGCAAAAACCAAAAACAAATCAC 59.717 36.000 0.00 0.00 0.00 3.06
542 543 5.180304 ACGCAAAAACCAAAAACAAATCACT 59.820 32.000 0.00 0.00 0.00 3.41
543 544 6.082984 CGCAAAAACCAAAAACAAATCACTT 58.917 32.000 0.00 0.00 0.00 3.16
544 545 6.248210 CGCAAAAACCAAAAACAAATCACTTC 59.752 34.615 0.00 0.00 0.00 3.01
545 546 7.080724 GCAAAAACCAAAAACAAATCACTTCA 58.919 30.769 0.00 0.00 0.00 3.02
546 547 7.754475 GCAAAAACCAAAAACAAATCACTTCAT 59.246 29.630 0.00 0.00 0.00 2.57
547 548 9.623350 CAAAAACCAAAAACAAATCACTTCATT 57.377 25.926 0.00 0.00 0.00 2.57
550 551 9.838975 AAACCAAAAACAAATCACTTCATTTTC 57.161 25.926 0.00 0.00 0.00 2.29
551 552 8.558973 ACCAAAAACAAATCACTTCATTTTCA 57.441 26.923 0.00 0.00 0.00 2.69
552 553 8.667463 ACCAAAAACAAATCACTTCATTTTCAG 58.333 29.630 0.00 0.00 0.00 3.02
553 554 7.641020 CCAAAAACAAATCACTTCATTTTCAGC 59.359 33.333 0.00 0.00 0.00 4.26
554 555 6.849588 AAACAAATCACTTCATTTTCAGCC 57.150 33.333 0.00 0.00 0.00 4.85
555 556 4.886579 ACAAATCACTTCATTTTCAGCCC 58.113 39.130 0.00 0.00 0.00 5.19
556 557 4.590222 ACAAATCACTTCATTTTCAGCCCT 59.410 37.500 0.00 0.00 0.00 5.19
557 558 4.796038 AATCACTTCATTTTCAGCCCTG 57.204 40.909 0.00 0.00 0.00 4.45
558 559 3.507162 TCACTTCATTTTCAGCCCTGA 57.493 42.857 0.00 0.00 37.91 3.86
559 560 4.038271 TCACTTCATTTTCAGCCCTGAT 57.962 40.909 0.00 0.00 39.64 2.90
560 561 4.012374 TCACTTCATTTTCAGCCCTGATC 58.988 43.478 0.00 0.00 39.64 2.92
561 562 3.760151 CACTTCATTTTCAGCCCTGATCA 59.240 43.478 0.00 0.00 39.64 2.92
562 563 4.401519 CACTTCATTTTCAGCCCTGATCAT 59.598 41.667 0.00 0.00 39.64 2.45
563 564 5.591472 CACTTCATTTTCAGCCCTGATCATA 59.409 40.000 0.00 0.00 39.64 2.15
564 565 6.264744 CACTTCATTTTCAGCCCTGATCATAT 59.735 38.462 0.00 0.00 39.64 1.78
565 566 6.837568 ACTTCATTTTCAGCCCTGATCATATT 59.162 34.615 0.00 0.00 39.64 1.28
566 567 6.889301 TCATTTTCAGCCCTGATCATATTC 57.111 37.500 0.00 0.00 39.64 1.75
567 568 6.607970 TCATTTTCAGCCCTGATCATATTCT 58.392 36.000 0.00 0.00 39.64 2.40
568 569 7.748677 TCATTTTCAGCCCTGATCATATTCTA 58.251 34.615 0.00 0.00 39.64 2.10
569 570 7.881751 TCATTTTCAGCCCTGATCATATTCTAG 59.118 37.037 0.00 0.00 39.64 2.43
570 571 6.753913 TTTCAGCCCTGATCATATTCTAGT 57.246 37.500 0.00 0.00 39.64 2.57
571 572 6.753913 TTCAGCCCTGATCATATTCTAGTT 57.246 37.500 0.00 0.00 39.64 2.24
572 573 7.855784 TTCAGCCCTGATCATATTCTAGTTA 57.144 36.000 0.00 0.00 39.64 2.24
573 574 7.473735 TCAGCCCTGATCATATTCTAGTTAG 57.526 40.000 0.00 0.00 34.14 2.34
574 575 7.013220 TCAGCCCTGATCATATTCTAGTTAGT 58.987 38.462 0.00 0.00 34.14 2.24
575 576 7.510685 TCAGCCCTGATCATATTCTAGTTAGTT 59.489 37.037 0.00 0.00 34.14 2.24
576 577 7.601886 CAGCCCTGATCATATTCTAGTTAGTTG 59.398 40.741 0.00 0.00 0.00 3.16
577 578 6.370166 GCCCTGATCATATTCTAGTTAGTTGC 59.630 42.308 0.00 0.00 0.00 4.17
578 579 6.876257 CCCTGATCATATTCTAGTTAGTTGCC 59.124 42.308 0.00 0.00 0.00 4.52
579 580 6.876257 CCTGATCATATTCTAGTTAGTTGCCC 59.124 42.308 0.00 0.00 0.00 5.36
580 581 6.455647 TGATCATATTCTAGTTAGTTGCCCG 58.544 40.000 0.00 0.00 0.00 6.13
581 582 4.628074 TCATATTCTAGTTAGTTGCCCGC 58.372 43.478 0.00 0.00 0.00 6.13
582 583 4.344102 TCATATTCTAGTTAGTTGCCCGCT 59.656 41.667 0.00 0.00 0.00 5.52
583 584 2.667473 TTCTAGTTAGTTGCCCGCTC 57.333 50.000 0.00 0.00 0.00 5.03
584 585 0.822164 TCTAGTTAGTTGCCCGCTCC 59.178 55.000 0.00 0.00 0.00 4.70
585 586 0.527817 CTAGTTAGTTGCCCGCTCCG 60.528 60.000 0.00 0.00 0.00 4.63
587 588 3.315949 TTAGTTGCCCGCTCCGGT 61.316 61.111 0.00 0.00 46.80 5.28
588 589 3.305177 TTAGTTGCCCGCTCCGGTC 62.305 63.158 0.00 0.00 46.80 4.79
590 591 4.778143 GTTGCCCGCTCCGGTCAT 62.778 66.667 0.00 0.00 46.80 3.06
591 592 4.776322 TTGCCCGCTCCGGTCATG 62.776 66.667 0.00 0.00 46.80 3.07
593 594 4.241555 GCCCGCTCCGGTCATGAT 62.242 66.667 0.00 0.00 46.80 2.45
594 595 2.029666 CCCGCTCCGGTCATGATC 59.970 66.667 0.00 0.00 46.80 2.92
595 596 2.796193 CCCGCTCCGGTCATGATCA 61.796 63.158 6.80 0.00 46.80 2.92
596 597 1.592669 CCGCTCCGGTCATGATCAC 60.593 63.158 6.80 0.00 42.73 3.06
597 598 1.141665 CGCTCCGGTCATGATCACA 59.858 57.895 6.80 0.00 0.00 3.58
598 599 0.873312 CGCTCCGGTCATGATCACAG 60.873 60.000 6.80 1.79 0.00 3.66
599 600 1.156645 GCTCCGGTCATGATCACAGC 61.157 60.000 6.80 8.50 0.00 4.40
600 601 0.531532 CTCCGGTCATGATCACAGCC 60.532 60.000 6.80 0.00 0.00 4.85
601 602 1.221566 CCGGTCATGATCACAGCCA 59.778 57.895 6.80 0.00 0.00 4.75
602 603 1.091771 CCGGTCATGATCACAGCCAC 61.092 60.000 6.80 0.00 0.00 5.01
603 604 0.391528 CGGTCATGATCACAGCCACA 60.392 55.000 6.80 0.00 0.00 4.17
604 605 1.825090 GGTCATGATCACAGCCACAA 58.175 50.000 0.00 0.00 0.00 3.33
605 606 2.372264 GGTCATGATCACAGCCACAAT 58.628 47.619 0.00 0.00 0.00 2.71
606 607 2.098607 GGTCATGATCACAGCCACAATG 59.901 50.000 0.00 0.00 0.00 2.82
607 608 1.746787 TCATGATCACAGCCACAATGC 59.253 47.619 0.00 0.00 0.00 3.56
608 609 1.749063 CATGATCACAGCCACAATGCT 59.251 47.619 0.00 0.00 44.00 3.79
609 610 1.456296 TGATCACAGCCACAATGCTC 58.544 50.000 0.00 0.00 40.32 4.26
610 611 0.376152 GATCACAGCCACAATGCTCG 59.624 55.000 0.00 0.00 40.32 5.03
611 612 1.028330 ATCACAGCCACAATGCTCGG 61.028 55.000 0.00 0.00 40.32 4.63
612 613 3.058160 ACAGCCACAATGCTCGGC 61.058 61.111 1.18 1.18 46.62 5.54
615 616 2.817834 GCCACAATGCTCGGCGTA 60.818 61.111 6.85 0.00 35.79 4.42
616 617 3.089784 CCACAATGCTCGGCGTAC 58.910 61.111 6.85 0.11 0.00 3.67
617 618 1.739929 CCACAATGCTCGGCGTACA 60.740 57.895 6.85 6.95 0.00 2.90
618 619 1.419922 CACAATGCTCGGCGTACAC 59.580 57.895 6.85 0.00 0.00 2.90
619 620 1.740296 ACAATGCTCGGCGTACACC 60.740 57.895 6.85 0.00 0.00 4.16
620 621 1.447838 CAATGCTCGGCGTACACCT 60.448 57.895 6.85 0.00 0.00 4.00
621 622 1.447838 AATGCTCGGCGTACACCTG 60.448 57.895 6.85 0.00 0.00 4.00
622 623 4.735132 TGCTCGGCGTACACCTGC 62.735 66.667 6.85 3.39 0.00 4.85
623 624 4.436998 GCTCGGCGTACACCTGCT 62.437 66.667 6.85 0.00 0.00 4.24
624 625 2.261671 CTCGGCGTACACCTGCTT 59.738 61.111 6.85 0.00 0.00 3.91
625 626 1.805945 CTCGGCGTACACCTGCTTC 60.806 63.158 6.85 0.00 0.00 3.86
626 627 2.048597 CGGCGTACACCTGCTTCA 60.049 61.111 0.00 0.00 0.00 3.02
627 628 2.380410 CGGCGTACACCTGCTTCAC 61.380 63.158 0.00 0.00 0.00 3.18
628 629 1.004918 GGCGTACACCTGCTTCACT 60.005 57.895 0.00 0.00 0.00 3.41
629 630 0.602905 GGCGTACACCTGCTTCACTT 60.603 55.000 0.00 0.00 0.00 3.16
630 631 0.790814 GCGTACACCTGCTTCACTTC 59.209 55.000 0.00 0.00 0.00 3.01
631 632 1.605712 GCGTACACCTGCTTCACTTCT 60.606 52.381 0.00 0.00 0.00 2.85
632 633 2.755650 CGTACACCTGCTTCACTTCTT 58.244 47.619 0.00 0.00 0.00 2.52
633 634 2.731976 CGTACACCTGCTTCACTTCTTC 59.268 50.000 0.00 0.00 0.00 2.87
634 635 2.262423 ACACCTGCTTCACTTCTTCC 57.738 50.000 0.00 0.00 0.00 3.46
635 636 1.202818 ACACCTGCTTCACTTCTTCCC 60.203 52.381 0.00 0.00 0.00 3.97
636 637 0.035458 ACCTGCTTCACTTCTTCCCG 59.965 55.000 0.00 0.00 0.00 5.14
637 638 0.035458 CCTGCTTCACTTCTTCCCGT 59.965 55.000 0.00 0.00 0.00 5.28
638 639 1.543429 CCTGCTTCACTTCTTCCCGTT 60.543 52.381 0.00 0.00 0.00 4.44
639 640 1.801178 CTGCTTCACTTCTTCCCGTTC 59.199 52.381 0.00 0.00 0.00 3.95
640 641 1.157585 GCTTCACTTCTTCCCGTTCC 58.842 55.000 0.00 0.00 0.00 3.62
641 642 1.542547 GCTTCACTTCTTCCCGTTCCA 60.543 52.381 0.00 0.00 0.00 3.53
642 643 2.143925 CTTCACTTCTTCCCGTTCCAC 58.856 52.381 0.00 0.00 0.00 4.02
643 644 1.124780 TCACTTCTTCCCGTTCCACA 58.875 50.000 0.00 0.00 0.00 4.17
644 645 1.070134 TCACTTCTTCCCGTTCCACAG 59.930 52.381 0.00 0.00 0.00 3.66
645 646 1.070134 CACTTCTTCCCGTTCCACAGA 59.930 52.381 0.00 0.00 0.00 3.41
646 647 1.978580 ACTTCTTCCCGTTCCACAGAT 59.021 47.619 0.00 0.00 0.00 2.90
647 648 2.372172 ACTTCTTCCCGTTCCACAGATT 59.628 45.455 0.00 0.00 0.00 2.40
648 649 2.762535 TCTTCCCGTTCCACAGATTC 57.237 50.000 0.00 0.00 0.00 2.52
649 650 2.257207 TCTTCCCGTTCCACAGATTCT 58.743 47.619 0.00 0.00 0.00 2.40
650 651 3.437213 TCTTCCCGTTCCACAGATTCTA 58.563 45.455 0.00 0.00 0.00 2.10
651 652 3.447586 TCTTCCCGTTCCACAGATTCTAG 59.552 47.826 0.00 0.00 0.00 2.43
652 653 2.108168 TCCCGTTCCACAGATTCTAGG 58.892 52.381 0.00 0.00 0.00 3.02
653 654 1.473434 CCCGTTCCACAGATTCTAGGC 60.473 57.143 0.00 0.00 0.00 3.93
654 655 1.560923 CGTTCCACAGATTCTAGGCG 58.439 55.000 0.00 0.00 0.00 5.52
655 656 1.291132 GTTCCACAGATTCTAGGCGC 58.709 55.000 0.00 0.00 0.00 6.53
656 657 0.179111 TTCCACAGATTCTAGGCGCG 60.179 55.000 0.00 0.00 0.00 6.86
657 658 2.240500 CCACAGATTCTAGGCGCGC 61.241 63.158 25.94 25.94 0.00 6.86
658 659 2.278857 ACAGATTCTAGGCGCGCG 60.279 61.111 28.44 28.44 0.00 6.86
659 660 3.032609 CAGATTCTAGGCGCGCGG 61.033 66.667 33.06 17.48 0.00 6.46
660 661 3.528370 AGATTCTAGGCGCGCGGT 61.528 61.111 33.06 17.66 0.00 5.68
661 662 3.030882 GATTCTAGGCGCGCGGTC 61.031 66.667 33.06 15.97 0.00 4.79
662 663 4.925576 ATTCTAGGCGCGCGGTCG 62.926 66.667 33.06 13.33 39.07 4.79
672 673 3.170585 CGCGGTCGACGGAGAAAC 61.171 66.667 25.40 7.36 44.51 2.78
673 674 2.808321 GCGGTCGACGGAGAAACC 60.808 66.667 25.40 1.23 44.51 3.27
674 675 2.646719 CGGTCGACGGAGAAACCA 59.353 61.111 17.47 0.00 39.42 3.67
675 676 1.007038 CGGTCGACGGAGAAACCAA 60.007 57.895 17.47 0.00 39.42 3.67
676 677 1.280206 CGGTCGACGGAGAAACCAAC 61.280 60.000 17.47 0.00 39.42 3.77
677 678 1.280206 GGTCGACGGAGAAACCAACG 61.280 60.000 9.92 0.00 38.90 4.10
678 679 0.318107 GTCGACGGAGAAACCAACGA 60.318 55.000 0.00 0.00 40.95 3.85
679 680 0.039798 TCGACGGAGAAACCAACGAG 60.040 55.000 0.00 0.00 39.43 4.18
680 681 0.039798 CGACGGAGAAACCAACGAGA 60.040 55.000 0.00 0.00 38.42 4.04
681 682 1.416373 GACGGAGAAACCAACGAGAC 58.584 55.000 0.00 0.00 38.90 3.36
682 683 1.000496 GACGGAGAAACCAACGAGACT 60.000 52.381 0.00 0.00 38.90 3.24
683 684 2.227388 GACGGAGAAACCAACGAGACTA 59.773 50.000 0.00 0.00 38.90 2.59
684 685 2.030451 ACGGAGAAACCAACGAGACTAC 60.030 50.000 0.00 0.00 38.90 2.73
685 686 2.228343 CGGAGAAACCAACGAGACTACT 59.772 50.000 0.00 0.00 38.90 2.57
686 687 3.438087 CGGAGAAACCAACGAGACTACTA 59.562 47.826 0.00 0.00 38.90 1.82
687 688 4.083110 CGGAGAAACCAACGAGACTACTAA 60.083 45.833 0.00 0.00 38.90 2.24
688 689 5.392811 CGGAGAAACCAACGAGACTACTAAT 60.393 44.000 0.00 0.00 38.90 1.73
689 690 6.035217 GGAGAAACCAACGAGACTACTAATC 58.965 44.000 0.00 0.00 38.79 1.75
690 691 6.127675 GGAGAAACCAACGAGACTACTAATCT 60.128 42.308 0.00 0.00 38.79 2.40
691 692 6.622549 AGAAACCAACGAGACTACTAATCTG 58.377 40.000 0.00 0.00 0.00 2.90
692 693 4.985538 ACCAACGAGACTACTAATCTGG 57.014 45.455 0.00 0.00 0.00 3.86
693 694 3.130693 ACCAACGAGACTACTAATCTGGC 59.869 47.826 0.00 0.00 0.00 4.85
694 695 3.491104 CCAACGAGACTACTAATCTGGCC 60.491 52.174 0.00 0.00 0.00 5.36
695 696 1.948145 ACGAGACTACTAATCTGGCCG 59.052 52.381 0.00 0.00 0.00 6.13
696 697 1.335142 CGAGACTACTAATCTGGCCGC 60.335 57.143 0.00 0.00 0.00 6.53
697 698 1.957877 GAGACTACTAATCTGGCCGCT 59.042 52.381 0.00 0.00 0.00 5.52
698 699 1.683917 AGACTACTAATCTGGCCGCTG 59.316 52.381 0.00 0.00 0.00 5.18
699 700 1.409427 GACTACTAATCTGGCCGCTGT 59.591 52.381 0.00 0.00 0.00 4.40
700 701 1.137086 ACTACTAATCTGGCCGCTGTG 59.863 52.381 0.00 0.00 0.00 3.66
701 702 0.179084 TACTAATCTGGCCGCTGTGC 60.179 55.000 0.00 0.00 0.00 4.57
738 739 4.787280 CCCCGGACCCAGAGAGCT 62.787 72.222 0.73 0.00 0.00 4.09
739 740 3.465403 CCCGGACCCAGAGAGCTG 61.465 72.222 0.73 0.00 41.93 4.24
751 752 2.799412 CAGAGAGCTGGATTTCATACGC 59.201 50.000 0.00 0.00 38.51 4.42
752 753 2.139118 GAGAGCTGGATTTCATACGCC 58.861 52.381 0.00 0.00 0.00 5.68
753 754 0.861837 GAGCTGGATTTCATACGCCG 59.138 55.000 0.00 0.00 0.00 6.46
754 755 0.532862 AGCTGGATTTCATACGCCGG 60.533 55.000 0.00 0.00 0.00 6.13
755 756 0.531974 GCTGGATTTCATACGCCGGA 60.532 55.000 5.05 0.00 0.00 5.14
756 757 1.878102 GCTGGATTTCATACGCCGGAT 60.878 52.381 5.05 0.00 0.00 4.18
757 758 2.494059 CTGGATTTCATACGCCGGATT 58.506 47.619 5.05 0.00 0.00 3.01
802 803 0.681243 GCCACCACCCTGGAAAGATC 60.681 60.000 0.00 0.00 40.96 2.75
804 805 0.034089 CACCACCCTGGAAAGATCCC 60.034 60.000 0.00 0.00 45.95 3.85
852 861 2.181372 CTAACAATGCACGTGCGCCA 62.181 55.000 33.22 18.51 45.83 5.69
888 898 9.744468 ACCAAAGTTAACAAGTATTTTGATCAC 57.256 29.630 8.61 0.00 0.00 3.06
993 1009 0.474660 GGTATCTGGCCCCTCTCCAT 60.475 60.000 0.00 0.00 32.37 3.41
1047 1063 4.659172 CTTCCCGGCCAGCCAACA 62.659 66.667 9.78 0.00 35.37 3.33
1188 1213 2.668632 GTCACCTCCATCCGCCAA 59.331 61.111 0.00 0.00 0.00 4.52
1191 1216 1.002134 CACCTCCATCCGCCAAACT 60.002 57.895 0.00 0.00 0.00 2.66
1260 1285 0.813821 CACGCATCACTCTCCTCTCA 59.186 55.000 0.00 0.00 0.00 3.27
1309 1334 3.323000 CGCGAGCATACACATGGG 58.677 61.111 0.00 0.00 32.36 4.00
1358 1390 2.696238 CTCTCGTCGTCGTCCTCG 59.304 66.667 1.33 0.00 38.33 4.63
1359 1391 3.423077 CTCTCGTCGTCGTCCTCGC 62.423 68.421 1.33 0.00 38.33 5.03
1360 1392 3.488978 CTCGTCGTCGTCCTCGCT 61.489 66.667 1.33 0.00 38.33 4.93
1472 1519 1.213013 CCACCACTTCCTCGACTCG 59.787 63.158 0.00 0.00 0.00 4.18
1542 1589 5.475719 TGTACAAGTACGAGCAAGCTAAAT 58.524 37.500 0.00 0.00 38.85 1.40
1560 1607 2.447244 ATTCATCTAGCGCTACTGCC 57.553 50.000 14.45 0.00 35.36 4.85
1561 1608 1.403814 TTCATCTAGCGCTACTGCCT 58.596 50.000 14.45 0.00 35.36 4.75
1562 1609 2.271944 TCATCTAGCGCTACTGCCTA 57.728 50.000 14.45 0.00 35.36 3.93
1563 1610 1.880675 TCATCTAGCGCTACTGCCTAC 59.119 52.381 14.45 0.00 35.36 3.18
1564 1611 1.883275 CATCTAGCGCTACTGCCTACT 59.117 52.381 14.45 0.00 35.36 2.57
1565 1612 1.309950 TCTAGCGCTACTGCCTACTG 58.690 55.000 14.45 0.12 35.36 2.74
1566 1613 0.318275 CTAGCGCTACTGCCTACTGC 60.318 60.000 14.45 0.00 41.77 4.40
1567 1614 0.752009 TAGCGCTACTGCCTACTGCT 60.752 55.000 14.45 0.00 42.00 4.24
1568 1615 1.880340 GCGCTACTGCCTACTGCTG 60.880 63.158 0.00 0.00 43.93 4.41
1569 1616 1.880340 CGCTACTGCCTACTGCTGC 60.880 63.158 0.00 0.00 42.24 5.25
1570 1617 1.219124 GCTACTGCCTACTGCTGCA 59.781 57.895 0.88 0.88 42.24 4.41
1574 1621 3.324930 TGCCTACTGCTGCAGCCT 61.325 61.111 34.64 22.04 42.00 4.58
1575 1622 2.823147 GCCTACTGCTGCAGCCTG 60.823 66.667 34.64 27.63 41.18 4.85
1576 1623 2.823147 CCTACTGCTGCAGCCTGC 60.823 66.667 34.64 10.45 45.29 4.85
1608 1694 5.560966 TGATTCTCTTTTATTTCCACGGC 57.439 39.130 0.00 0.00 0.00 5.68
1620 1706 1.215382 CCACGGCGAGAAGATCACA 59.785 57.895 16.62 0.00 0.00 3.58
1621 1707 0.389817 CCACGGCGAGAAGATCACAA 60.390 55.000 16.62 0.00 0.00 3.33
1622 1708 0.716108 CACGGCGAGAAGATCACAAC 59.284 55.000 16.62 0.00 0.00 3.32
1623 1709 0.603569 ACGGCGAGAAGATCACAACT 59.396 50.000 16.62 0.00 0.00 3.16
1624 1710 1.000955 ACGGCGAGAAGATCACAACTT 59.999 47.619 16.62 0.00 0.00 2.66
1625 1711 1.656095 CGGCGAGAAGATCACAACTTC 59.344 52.381 0.00 0.00 42.53 3.01
1899 2007 3.431725 GTGGCCGCCAGCTAACAC 61.432 66.667 13.92 0.00 43.05 3.32
1931 2039 3.960998 CGCGCTCGTGCACGTATC 61.961 66.667 35.74 23.88 39.56 2.24
1932 2040 3.960998 GCGCTCGTGCACGTATCG 61.961 66.667 35.74 32.35 40.80 2.92
2027 2148 1.137086 AGCAGTTCGTCCGAATGCTAT 59.863 47.619 24.31 11.75 41.89 2.97
2028 2149 1.523095 GCAGTTCGTCCGAATGCTATC 59.477 52.381 19.78 4.36 36.58 2.08
2029 2150 2.809446 CAGTTCGTCCGAATGCTATCA 58.191 47.619 5.33 0.00 36.45 2.15
2030 2151 3.186909 CAGTTCGTCCGAATGCTATCAA 58.813 45.455 5.33 0.00 36.45 2.57
2058 2179 5.510520 GCAAGAGGGGAGAGATGTATAGTTG 60.511 48.000 0.00 0.00 0.00 3.16
2061 2182 5.135362 AGAGGGGAGAGATGTATAGTTGAGT 59.865 44.000 0.00 0.00 0.00 3.41
2160 2306 4.686972 CTGGAGTTCATCGATCAAGCTTA 58.313 43.478 0.00 0.00 0.00 3.09
2161 2307 4.686972 TGGAGTTCATCGATCAAGCTTAG 58.313 43.478 0.00 0.00 0.00 2.18
2162 2308 3.492756 GGAGTTCATCGATCAAGCTTAGC 59.507 47.826 0.00 0.00 0.00 3.09
2163 2309 4.367450 GAGTTCATCGATCAAGCTTAGCT 58.633 43.478 0.00 0.00 42.56 3.32
2184 2334 0.879765 TCGAGTCTTCTTCGGGACAC 59.120 55.000 0.00 0.00 35.18 3.67
2234 2384 6.499699 TCTCAATGATATGATACCCTGCTTCT 59.500 38.462 0.00 0.00 0.00 2.85
2244 2394 2.269940 ACCCTGCTTCTTCCTGTGTAT 58.730 47.619 0.00 0.00 0.00 2.29
2245 2395 2.026822 ACCCTGCTTCTTCCTGTGTATG 60.027 50.000 0.00 0.00 0.00 2.39
2249 2402 4.118410 CTGCTTCTTCCTGTGTATGCTAG 58.882 47.826 0.00 0.00 0.00 3.42
2263 2416 4.403752 TGTATGCTAGTCTTCTGCATCAGT 59.596 41.667 9.82 0.00 44.91 3.41
2265 2418 4.645762 TGCTAGTCTTCTGCATCAGTAG 57.354 45.455 0.00 0.00 32.61 2.57
2304 2495 6.460781 TCCGAGCTTATGTTACAAGAAGAAA 58.539 36.000 12.62 0.00 0.00 2.52
2526 2731 9.102757 GTAGATTCTTCACAAGATATTTGCAGA 57.897 33.333 0.00 0.00 37.38 4.26
2574 2793 2.619849 CCACCAGGAGAGATGTGCAAAT 60.620 50.000 0.00 0.00 36.89 2.32
2645 2864 1.669604 TTGTTGCGCCTTTACTGTGA 58.330 45.000 4.18 0.00 0.00 3.58
2650 2869 1.337447 TGCGCCTTTACTGTGACCTAC 60.337 52.381 4.18 0.00 0.00 3.18
2702 2921 3.563508 TGTTATGTGTTGCGCTTCATTG 58.436 40.909 9.73 0.00 0.00 2.82
2743 2979 6.051717 CCAGGGAACATCTTACATGAGTTAG 58.948 44.000 0.00 0.00 0.00 2.34
2745 2981 5.189736 AGGGAACATCTTACATGAGTTAGCA 59.810 40.000 0.00 0.00 0.00 3.49
2757 2993 2.853731 AGTTAGCAACTCCGATCTCG 57.146 50.000 0.00 0.00 37.02 4.04
2863 3099 1.865788 TTGATTTGCGCCTGTCAGCC 61.866 55.000 4.18 0.00 0.00 4.85
2885 3121 5.415701 GCCTCTCAATTGGAAAACAGACATA 59.584 40.000 5.42 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.385315 CGTACCTCACTGTATGCGATG 58.615 52.381 0.00 0.00 0.00 3.84
1 2 1.269102 GCGTACCTCACTGTATGCGAT 60.269 52.381 0.00 0.00 42.11 4.58
2 3 0.099968 GCGTACCTCACTGTATGCGA 59.900 55.000 0.00 0.00 42.11 5.10
3 4 2.578369 GCGTACCTCACTGTATGCG 58.422 57.895 0.00 0.00 42.11 4.73
5 6 1.922570 GGTGCGTACCTCACTGTATG 58.077 55.000 16.23 0.00 43.97 2.39
29 30 4.547367 GGATTCGTGGGAGGGGCG 62.547 72.222 0.00 0.00 0.00 6.13
30 31 3.090532 AGGATTCGTGGGAGGGGC 61.091 66.667 0.00 0.00 0.00 5.80
31 32 2.746375 CCAGGATTCGTGGGAGGGG 61.746 68.421 16.09 0.00 35.96 4.79
32 33 2.911143 CCAGGATTCGTGGGAGGG 59.089 66.667 16.09 0.00 35.96 4.30
37 38 2.910579 TCCTACCCAGGATTCGTGG 58.089 57.895 16.79 16.79 46.58 4.94
45 46 0.825010 GCAATGGCATCCTACCCAGG 60.825 60.000 0.00 0.00 40.96 4.45
46 47 0.825010 GGCAATGGCATCCTACCCAG 60.825 60.000 0.00 0.00 43.71 4.45
47 48 1.229927 GGCAATGGCATCCTACCCA 59.770 57.895 0.00 0.00 43.71 4.51
48 49 0.396974 TTGGCAATGGCATCCTACCC 60.397 55.000 11.08 0.00 43.71 3.69
49 50 0.746659 GTTGGCAATGGCATCCTACC 59.253 55.000 11.08 0.57 43.71 3.18
50 51 1.678101 GAGTTGGCAATGGCATCCTAC 59.322 52.381 11.08 5.75 43.71 3.18
51 52 1.284491 TGAGTTGGCAATGGCATCCTA 59.716 47.619 11.08 0.00 43.71 2.94
52 53 0.040058 TGAGTTGGCAATGGCATCCT 59.960 50.000 11.08 9.72 43.71 3.24
53 54 0.896923 TTGAGTTGGCAATGGCATCC 59.103 50.000 11.08 4.57 43.71 3.51
54 55 1.820519 TCTTGAGTTGGCAATGGCATC 59.179 47.619 11.08 10.18 43.71 3.91
55 56 1.927487 TCTTGAGTTGGCAATGGCAT 58.073 45.000 11.08 0.00 43.71 4.40
56 57 1.614903 CTTCTTGAGTTGGCAATGGCA 59.385 47.619 5.05 5.05 43.71 4.92
57 58 1.888512 TCTTCTTGAGTTGGCAATGGC 59.111 47.619 1.92 0.00 40.13 4.40
58 59 3.571401 ACTTCTTCTTGAGTTGGCAATGG 59.429 43.478 1.92 0.00 0.00 3.16
59 60 4.843220 ACTTCTTCTTGAGTTGGCAATG 57.157 40.909 1.92 0.00 0.00 2.82
60 61 4.646492 ACAACTTCTTCTTGAGTTGGCAAT 59.354 37.500 17.40 0.00 43.98 3.56
61 62 4.016444 ACAACTTCTTCTTGAGTTGGCAA 58.984 39.130 17.40 0.00 43.98 4.52
62 63 3.378112 CACAACTTCTTCTTGAGTTGGCA 59.622 43.478 17.40 0.00 43.98 4.92
63 64 3.243201 CCACAACTTCTTCTTGAGTTGGC 60.243 47.826 17.40 0.00 43.98 4.52
64 65 3.316308 CCCACAACTTCTTCTTGAGTTGG 59.684 47.826 17.40 8.61 43.98 3.77
65 66 3.316308 CCCCACAACTTCTTCTTGAGTTG 59.684 47.826 13.04 13.04 44.86 3.16
66 67 3.555966 CCCCACAACTTCTTCTTGAGTT 58.444 45.455 0.00 0.00 0.00 3.01
67 68 2.158608 CCCCCACAACTTCTTCTTGAGT 60.159 50.000 0.00 0.00 0.00 3.41
68 69 2.508526 CCCCCACAACTTCTTCTTGAG 58.491 52.381 0.00 0.00 0.00 3.02
69 70 2.656947 CCCCCACAACTTCTTCTTGA 57.343 50.000 0.00 0.00 0.00 3.02
484 485 3.370840 TGGAGAGGGAATGTGGAATTG 57.629 47.619 0.00 0.00 0.00 2.32
485 486 4.614967 AATGGAGAGGGAATGTGGAATT 57.385 40.909 0.00 0.00 0.00 2.17
486 487 4.614967 AAATGGAGAGGGAATGTGGAAT 57.385 40.909 0.00 0.00 0.00 3.01
487 488 4.202663 TGAAAATGGAGAGGGAATGTGGAA 60.203 41.667 0.00 0.00 0.00 3.53
488 489 3.333381 TGAAAATGGAGAGGGAATGTGGA 59.667 43.478 0.00 0.00 0.00 4.02
489 490 3.700538 TGAAAATGGAGAGGGAATGTGG 58.299 45.455 0.00 0.00 0.00 4.17
490 491 5.927281 AATGAAAATGGAGAGGGAATGTG 57.073 39.130 0.00 0.00 0.00 3.21
491 492 6.070596 GGAAAATGAAAATGGAGAGGGAATGT 60.071 38.462 0.00 0.00 0.00 2.71
492 493 6.343703 GGAAAATGAAAATGGAGAGGGAATG 58.656 40.000 0.00 0.00 0.00 2.67
493 494 5.426509 GGGAAAATGAAAATGGAGAGGGAAT 59.573 40.000 0.00 0.00 0.00 3.01
494 495 4.777366 GGGAAAATGAAAATGGAGAGGGAA 59.223 41.667 0.00 0.00 0.00 3.97
495 496 4.202770 TGGGAAAATGAAAATGGAGAGGGA 60.203 41.667 0.00 0.00 0.00 4.20
496 497 4.081476 GTGGGAAAATGAAAATGGAGAGGG 60.081 45.833 0.00 0.00 0.00 4.30
497 498 4.380867 CGTGGGAAAATGAAAATGGAGAGG 60.381 45.833 0.00 0.00 0.00 3.69
498 499 4.737054 CGTGGGAAAATGAAAATGGAGAG 58.263 43.478 0.00 0.00 0.00 3.20
499 500 3.056891 GCGTGGGAAAATGAAAATGGAGA 60.057 43.478 0.00 0.00 0.00 3.71
500 501 3.253230 GCGTGGGAAAATGAAAATGGAG 58.747 45.455 0.00 0.00 0.00 3.86
501 502 2.630098 TGCGTGGGAAAATGAAAATGGA 59.370 40.909 0.00 0.00 0.00 3.41
502 503 3.037431 TGCGTGGGAAAATGAAAATGG 57.963 42.857 0.00 0.00 0.00 3.16
503 504 5.415415 TTTTGCGTGGGAAAATGAAAATG 57.585 34.783 0.00 0.00 0.00 2.32
504 505 5.220951 GGTTTTTGCGTGGGAAAATGAAAAT 60.221 36.000 0.00 0.00 0.00 1.82
505 506 4.095036 GGTTTTTGCGTGGGAAAATGAAAA 59.905 37.500 0.00 0.00 0.00 2.29
506 507 3.623510 GGTTTTTGCGTGGGAAAATGAAA 59.376 39.130 0.00 0.00 0.00 2.69
507 508 3.198872 GGTTTTTGCGTGGGAAAATGAA 58.801 40.909 0.00 0.00 0.00 2.57
508 509 2.168521 TGGTTTTTGCGTGGGAAAATGA 59.831 40.909 0.00 0.00 0.00 2.57
509 510 2.555199 TGGTTTTTGCGTGGGAAAATG 58.445 42.857 0.00 0.00 0.00 2.32
510 511 2.990066 TGGTTTTTGCGTGGGAAAAT 57.010 40.000 0.00 0.00 0.00 1.82
511 512 2.762535 TTGGTTTTTGCGTGGGAAAA 57.237 40.000 0.00 0.00 0.00 2.29
512 513 2.762535 TTTGGTTTTTGCGTGGGAAA 57.237 40.000 0.00 0.00 0.00 3.13
513 514 2.742589 GTTTTTGGTTTTTGCGTGGGAA 59.257 40.909 0.00 0.00 0.00 3.97
514 515 2.289444 TGTTTTTGGTTTTTGCGTGGGA 60.289 40.909 0.00 0.00 0.00 4.37
515 516 2.076863 TGTTTTTGGTTTTTGCGTGGG 58.923 42.857 0.00 0.00 0.00 4.61
516 517 3.813529 TTGTTTTTGGTTTTTGCGTGG 57.186 38.095 0.00 0.00 0.00 4.94
517 518 5.282544 GTGATTTGTTTTTGGTTTTTGCGTG 59.717 36.000 0.00 0.00 0.00 5.34
518 519 5.180304 AGTGATTTGTTTTTGGTTTTTGCGT 59.820 32.000 0.00 0.00 0.00 5.24
519 520 5.626211 AGTGATTTGTTTTTGGTTTTTGCG 58.374 33.333 0.00 0.00 0.00 4.85
520 521 7.080724 TGAAGTGATTTGTTTTTGGTTTTTGC 58.919 30.769 0.00 0.00 0.00 3.68
521 522 9.623350 AATGAAGTGATTTGTTTTTGGTTTTTG 57.377 25.926 0.00 0.00 0.00 2.44
524 525 9.838975 GAAAATGAAGTGATTTGTTTTTGGTTT 57.161 25.926 0.00 0.00 0.00 3.27
525 526 9.007901 TGAAAATGAAGTGATTTGTTTTTGGTT 57.992 25.926 0.00 0.00 0.00 3.67
526 527 8.558973 TGAAAATGAAGTGATTTGTTTTTGGT 57.441 26.923 0.00 0.00 0.00 3.67
527 528 7.641020 GCTGAAAATGAAGTGATTTGTTTTTGG 59.359 33.333 0.00 0.00 0.00 3.28
528 529 7.641020 GGCTGAAAATGAAGTGATTTGTTTTTG 59.359 33.333 0.00 0.00 0.00 2.44
529 530 7.201723 GGGCTGAAAATGAAGTGATTTGTTTTT 60.202 33.333 0.00 0.00 0.00 1.94
530 531 6.260714 GGGCTGAAAATGAAGTGATTTGTTTT 59.739 34.615 0.00 0.00 0.00 2.43
531 532 5.759763 GGGCTGAAAATGAAGTGATTTGTTT 59.240 36.000 0.00 0.00 0.00 2.83
532 533 5.070847 AGGGCTGAAAATGAAGTGATTTGTT 59.929 36.000 0.00 0.00 0.00 2.83
533 534 4.590222 AGGGCTGAAAATGAAGTGATTTGT 59.410 37.500 0.00 0.00 0.00 2.83
534 535 4.927425 CAGGGCTGAAAATGAAGTGATTTG 59.073 41.667 0.00 0.00 0.00 2.32
535 536 4.834496 TCAGGGCTGAAAATGAAGTGATTT 59.166 37.500 0.00 0.00 36.53 2.17
536 537 4.410099 TCAGGGCTGAAAATGAAGTGATT 58.590 39.130 0.00 0.00 36.53 2.57
537 538 4.038271 TCAGGGCTGAAAATGAAGTGAT 57.962 40.909 0.00 0.00 36.53 3.06
538 539 3.507162 TCAGGGCTGAAAATGAAGTGA 57.493 42.857 0.00 0.00 36.53 3.41
539 540 3.760151 TGATCAGGGCTGAAAATGAAGTG 59.240 43.478 0.00 0.00 43.58 3.16
540 541 4.038271 TGATCAGGGCTGAAAATGAAGT 57.962 40.909 0.00 0.00 43.58 3.01
541 542 6.896021 ATATGATCAGGGCTGAAAATGAAG 57.104 37.500 0.09 0.00 43.58 3.02
542 543 7.064866 AGAATATGATCAGGGCTGAAAATGAA 58.935 34.615 0.09 0.00 43.58 2.57
543 544 6.607970 AGAATATGATCAGGGCTGAAAATGA 58.392 36.000 0.09 0.00 43.58 2.57
544 545 6.896021 AGAATATGATCAGGGCTGAAAATG 57.104 37.500 0.09 0.00 43.58 2.32
545 546 7.753630 ACTAGAATATGATCAGGGCTGAAAAT 58.246 34.615 0.09 0.00 43.58 1.82
546 547 7.141758 ACTAGAATATGATCAGGGCTGAAAA 57.858 36.000 0.09 0.00 43.58 2.29
547 548 6.753913 ACTAGAATATGATCAGGGCTGAAA 57.246 37.500 0.09 0.00 43.58 2.69
548 549 6.753913 AACTAGAATATGATCAGGGCTGAA 57.246 37.500 0.09 0.00 43.58 3.02
549 550 7.013220 ACTAACTAGAATATGATCAGGGCTGA 58.987 38.462 0.09 0.00 44.59 4.26
550 551 7.238486 ACTAACTAGAATATGATCAGGGCTG 57.762 40.000 0.09 0.00 0.00 4.85
551 552 7.675062 CAACTAACTAGAATATGATCAGGGCT 58.325 38.462 0.09 0.00 0.00 5.19
552 553 6.370166 GCAACTAACTAGAATATGATCAGGGC 59.630 42.308 0.09 0.00 0.00 5.19
553 554 6.876257 GGCAACTAACTAGAATATGATCAGGG 59.124 42.308 0.09 0.00 0.00 4.45
554 555 6.876257 GGGCAACTAACTAGAATATGATCAGG 59.124 42.308 0.09 0.00 0.00 3.86
555 556 6.587990 CGGGCAACTAACTAGAATATGATCAG 59.412 42.308 0.09 0.00 0.00 2.90
556 557 6.455647 CGGGCAACTAACTAGAATATGATCA 58.544 40.000 0.00 0.00 0.00 2.92
557 558 5.348997 GCGGGCAACTAACTAGAATATGATC 59.651 44.000 0.00 0.00 0.00 2.92
558 559 5.012148 AGCGGGCAACTAACTAGAATATGAT 59.988 40.000 0.00 0.00 0.00 2.45
559 560 4.344102 AGCGGGCAACTAACTAGAATATGA 59.656 41.667 0.00 0.00 0.00 2.15
560 561 4.632153 AGCGGGCAACTAACTAGAATATG 58.368 43.478 0.00 0.00 0.00 1.78
561 562 4.262506 GGAGCGGGCAACTAACTAGAATAT 60.263 45.833 0.00 0.00 0.00 1.28
562 563 3.069158 GGAGCGGGCAACTAACTAGAATA 59.931 47.826 0.00 0.00 0.00 1.75
563 564 2.158943 GGAGCGGGCAACTAACTAGAAT 60.159 50.000 0.00 0.00 0.00 2.40
564 565 1.206371 GGAGCGGGCAACTAACTAGAA 59.794 52.381 0.00 0.00 0.00 2.10
565 566 0.822164 GGAGCGGGCAACTAACTAGA 59.178 55.000 0.00 0.00 0.00 2.43
566 567 0.527817 CGGAGCGGGCAACTAACTAG 60.528 60.000 0.00 0.00 0.00 2.57
567 568 1.514087 CGGAGCGGGCAACTAACTA 59.486 57.895 0.00 0.00 0.00 2.24
568 569 2.264794 CGGAGCGGGCAACTAACT 59.735 61.111 0.00 0.00 0.00 2.24
569 570 2.818274 CCGGAGCGGGCAACTAAC 60.818 66.667 0.00 0.00 44.15 2.34
579 580 0.873312 CTGTGATCATGACCGGAGCG 60.873 60.000 9.46 0.00 0.00 5.03
580 581 1.156645 GCTGTGATCATGACCGGAGC 61.157 60.000 9.46 0.00 0.00 4.70
581 582 0.531532 GGCTGTGATCATGACCGGAG 60.532 60.000 9.46 0.00 0.00 4.63
582 583 1.264045 TGGCTGTGATCATGACCGGA 61.264 55.000 9.46 0.00 0.00 5.14
583 584 1.091771 GTGGCTGTGATCATGACCGG 61.092 60.000 0.00 0.00 0.00 5.28
584 585 0.391528 TGTGGCTGTGATCATGACCG 60.392 55.000 0.00 0.00 0.00 4.79
585 586 1.825090 TTGTGGCTGTGATCATGACC 58.175 50.000 0.00 1.00 0.00 4.02
586 587 2.479049 GCATTGTGGCTGTGATCATGAC 60.479 50.000 0.00 0.00 0.00 3.06
587 588 1.746787 GCATTGTGGCTGTGATCATGA 59.253 47.619 0.00 0.00 0.00 3.07
588 589 1.749063 AGCATTGTGGCTGTGATCATG 59.251 47.619 0.00 0.00 43.89 3.07
589 590 2.022195 GAGCATTGTGGCTGTGATCAT 58.978 47.619 0.00 0.00 45.99 2.45
590 591 1.456296 GAGCATTGTGGCTGTGATCA 58.544 50.000 0.00 0.00 45.99 2.92
591 592 0.376152 CGAGCATTGTGGCTGTGATC 59.624 55.000 0.00 0.00 45.99 2.92
592 593 1.028330 CCGAGCATTGTGGCTGTGAT 61.028 55.000 0.00 0.00 45.99 3.06
593 594 1.672030 CCGAGCATTGTGGCTGTGA 60.672 57.895 0.00 0.00 45.99 3.58
594 595 2.872557 CCGAGCATTGTGGCTGTG 59.127 61.111 0.00 0.00 45.99 3.66
595 596 3.058160 GCCGAGCATTGTGGCTGT 61.058 61.111 8.77 0.00 45.99 4.40
596 597 4.170062 CGCCGAGCATTGTGGCTG 62.170 66.667 12.63 5.28 45.99 4.85
598 599 2.817834 TACGCCGAGCATTGTGGC 60.818 61.111 0.00 6.63 45.39 5.01
599 600 1.739929 TGTACGCCGAGCATTGTGG 60.740 57.895 0.00 0.00 0.00 4.17
600 601 1.419922 GTGTACGCCGAGCATTGTG 59.580 57.895 0.00 0.00 0.00 3.33
601 602 1.740296 GGTGTACGCCGAGCATTGT 60.740 57.895 10.25 0.00 0.00 2.71
602 603 1.447838 AGGTGTACGCCGAGCATTG 60.448 57.895 19.53 0.00 0.00 2.82
603 604 1.447838 CAGGTGTACGCCGAGCATT 60.448 57.895 19.53 0.00 0.00 3.56
604 605 2.184322 CAGGTGTACGCCGAGCAT 59.816 61.111 19.53 0.00 0.00 3.79
605 606 4.735132 GCAGGTGTACGCCGAGCA 62.735 66.667 29.21 0.00 35.52 4.26
606 607 3.934391 AAGCAGGTGTACGCCGAGC 62.934 63.158 27.85 27.85 35.62 5.03
607 608 1.805945 GAAGCAGGTGTACGCCGAG 60.806 63.158 19.53 16.63 0.00 4.63
608 609 2.260434 GAAGCAGGTGTACGCCGA 59.740 61.111 19.53 0.00 0.00 5.54
609 610 2.048597 TGAAGCAGGTGTACGCCG 60.049 61.111 19.53 14.97 0.00 6.46
610 611 0.602905 AAGTGAAGCAGGTGTACGCC 60.603 55.000 18.11 18.11 0.00 5.68
611 612 0.790814 GAAGTGAAGCAGGTGTACGC 59.209 55.000 0.00 0.00 0.00 4.42
612 613 2.440539 AGAAGTGAAGCAGGTGTACG 57.559 50.000 0.00 0.00 0.00 3.67
613 614 3.067833 GGAAGAAGTGAAGCAGGTGTAC 58.932 50.000 0.00 0.00 0.00 2.90
614 615 2.038557 GGGAAGAAGTGAAGCAGGTGTA 59.961 50.000 0.00 0.00 0.00 2.90
615 616 1.202818 GGGAAGAAGTGAAGCAGGTGT 60.203 52.381 0.00 0.00 0.00 4.16
616 617 1.528129 GGGAAGAAGTGAAGCAGGTG 58.472 55.000 0.00 0.00 0.00 4.00
617 618 0.035458 CGGGAAGAAGTGAAGCAGGT 59.965 55.000 0.00 0.00 0.00 4.00
618 619 0.035458 ACGGGAAGAAGTGAAGCAGG 59.965 55.000 0.00 0.00 0.00 4.85
619 620 1.801178 GAACGGGAAGAAGTGAAGCAG 59.199 52.381 0.00 0.00 0.00 4.24
620 621 1.542547 GGAACGGGAAGAAGTGAAGCA 60.543 52.381 0.00 0.00 0.00 3.91
621 622 1.157585 GGAACGGGAAGAAGTGAAGC 58.842 55.000 0.00 0.00 0.00 3.86
622 623 2.143925 GTGGAACGGGAAGAAGTGAAG 58.856 52.381 0.00 0.00 0.00 3.02
623 624 1.487142 TGTGGAACGGGAAGAAGTGAA 59.513 47.619 0.00 0.00 42.39 3.18
624 625 1.070134 CTGTGGAACGGGAAGAAGTGA 59.930 52.381 0.00 0.00 42.39 3.41
625 626 1.070134 TCTGTGGAACGGGAAGAAGTG 59.930 52.381 0.00 0.00 45.47 3.16
626 627 1.420430 TCTGTGGAACGGGAAGAAGT 58.580 50.000 0.00 0.00 45.47 3.01
627 628 2.770164 ATCTGTGGAACGGGAAGAAG 57.230 50.000 0.00 0.00 45.47 2.85
628 629 2.637872 AGAATCTGTGGAACGGGAAGAA 59.362 45.455 0.00 0.00 45.47 2.52
629 630 2.257207 AGAATCTGTGGAACGGGAAGA 58.743 47.619 0.00 0.00 45.47 2.87
630 631 2.770164 AGAATCTGTGGAACGGGAAG 57.230 50.000 0.00 0.00 45.47 3.46
631 632 2.500098 CCTAGAATCTGTGGAACGGGAA 59.500 50.000 0.00 0.00 45.47 3.97
632 633 2.108168 CCTAGAATCTGTGGAACGGGA 58.892 52.381 0.00 0.00 45.47 5.14
633 634 1.473434 GCCTAGAATCTGTGGAACGGG 60.473 57.143 8.03 0.00 45.47 5.28
635 636 1.560923 CGCCTAGAATCTGTGGAACG 58.439 55.000 8.03 0.72 42.39 3.95
636 637 1.291132 GCGCCTAGAATCTGTGGAAC 58.709 55.000 0.00 0.00 37.35 3.62
637 638 0.179111 CGCGCCTAGAATCTGTGGAA 60.179 55.000 0.00 0.00 0.00 3.53
638 639 1.437573 CGCGCCTAGAATCTGTGGA 59.562 57.895 0.00 0.00 0.00 4.02
639 640 2.240500 GCGCGCCTAGAATCTGTGG 61.241 63.158 23.24 0.00 0.00 4.17
640 641 2.580470 CGCGCGCCTAGAATCTGTG 61.580 63.158 27.72 2.11 0.00 3.66
641 642 2.278857 CGCGCGCCTAGAATCTGT 60.279 61.111 27.72 0.00 0.00 3.41
642 643 3.032609 CCGCGCGCCTAGAATCTG 61.033 66.667 27.36 7.77 0.00 2.90
643 644 3.486252 GACCGCGCGCCTAGAATCT 62.486 63.158 27.36 0.00 0.00 2.40
644 645 3.030882 GACCGCGCGCCTAGAATC 61.031 66.667 27.36 10.21 0.00 2.52
645 646 4.925576 CGACCGCGCGCCTAGAAT 62.926 66.667 27.36 4.09 0.00 2.40
655 656 3.170585 GTTTCTCCGTCGACCGCG 61.171 66.667 10.58 0.00 39.35 6.46
656 657 2.808321 GGTTTCTCCGTCGACCGC 60.808 66.667 10.58 0.00 34.38 5.68
657 658 1.007038 TTGGTTTCTCCGTCGACCG 60.007 57.895 10.58 3.37 39.52 4.79
658 659 1.280206 CGTTGGTTTCTCCGTCGACC 61.280 60.000 10.58 0.00 39.52 4.79
659 660 0.318107 TCGTTGGTTTCTCCGTCGAC 60.318 55.000 5.18 5.18 38.31 4.20
660 661 0.039798 CTCGTTGGTTTCTCCGTCGA 60.040 55.000 0.00 0.00 39.81 4.20
661 662 0.039798 TCTCGTTGGTTTCTCCGTCG 60.040 55.000 0.00 0.00 39.52 5.12
662 663 1.000496 AGTCTCGTTGGTTTCTCCGTC 60.000 52.381 0.00 0.00 39.52 4.79
663 664 1.038280 AGTCTCGTTGGTTTCTCCGT 58.962 50.000 0.00 0.00 39.52 4.69
664 665 2.228343 AGTAGTCTCGTTGGTTTCTCCG 59.772 50.000 0.00 0.00 39.52 4.63
665 666 3.938289 AGTAGTCTCGTTGGTTTCTCC 57.062 47.619 0.00 0.00 0.00 3.71
666 667 6.748198 CAGATTAGTAGTCTCGTTGGTTTCTC 59.252 42.308 0.00 0.00 0.00 2.87
667 668 6.350277 CCAGATTAGTAGTCTCGTTGGTTTCT 60.350 42.308 0.00 0.00 0.00 2.52
668 669 5.805994 CCAGATTAGTAGTCTCGTTGGTTTC 59.194 44.000 0.00 0.00 0.00 2.78
669 670 5.721232 CCAGATTAGTAGTCTCGTTGGTTT 58.279 41.667 0.00 0.00 0.00 3.27
670 671 4.381718 GCCAGATTAGTAGTCTCGTTGGTT 60.382 45.833 0.00 0.00 0.00 3.67
671 672 3.130693 GCCAGATTAGTAGTCTCGTTGGT 59.869 47.826 0.00 0.00 0.00 3.67
672 673 3.491104 GGCCAGATTAGTAGTCTCGTTGG 60.491 52.174 0.00 0.00 0.00 3.77
673 674 3.707793 GGCCAGATTAGTAGTCTCGTTG 58.292 50.000 0.00 0.00 0.00 4.10
674 675 2.358267 CGGCCAGATTAGTAGTCTCGTT 59.642 50.000 2.24 0.00 0.00 3.85
675 676 1.948145 CGGCCAGATTAGTAGTCTCGT 59.052 52.381 2.24 0.00 0.00 4.18
676 677 1.335142 GCGGCCAGATTAGTAGTCTCG 60.335 57.143 2.24 0.00 0.00 4.04
677 678 1.957877 AGCGGCCAGATTAGTAGTCTC 59.042 52.381 2.24 0.00 0.00 3.36
678 679 1.683917 CAGCGGCCAGATTAGTAGTCT 59.316 52.381 2.24 0.00 0.00 3.24
679 680 1.409427 ACAGCGGCCAGATTAGTAGTC 59.591 52.381 2.24 0.00 0.00 2.59
680 681 1.137086 CACAGCGGCCAGATTAGTAGT 59.863 52.381 2.24 0.00 0.00 2.73
681 682 1.858091 CACAGCGGCCAGATTAGTAG 58.142 55.000 2.24 0.00 0.00 2.57
682 683 0.179084 GCACAGCGGCCAGATTAGTA 60.179 55.000 2.24 0.00 0.00 1.82
683 684 1.450312 GCACAGCGGCCAGATTAGT 60.450 57.895 2.24 0.00 0.00 2.24
684 685 3.414272 GCACAGCGGCCAGATTAG 58.586 61.111 2.24 0.00 0.00 1.73
721 722 4.787280 AGCTCTCTGGGTCCGGGG 62.787 72.222 0.00 0.00 0.00 5.73
722 723 3.465403 CAGCTCTCTGGGTCCGGG 61.465 72.222 0.00 0.00 36.68 5.73
730 731 2.799412 GCGTATGAAATCCAGCTCTCTG 59.201 50.000 0.00 0.00 40.02 3.35
731 732 2.224161 GGCGTATGAAATCCAGCTCTCT 60.224 50.000 0.00 0.00 0.00 3.10
732 733 2.139118 GGCGTATGAAATCCAGCTCTC 58.861 52.381 0.00 0.00 0.00 3.20
733 734 1.539065 CGGCGTATGAAATCCAGCTCT 60.539 52.381 0.00 0.00 0.00 4.09
734 735 0.861837 CGGCGTATGAAATCCAGCTC 59.138 55.000 0.00 0.00 0.00 4.09
735 736 0.532862 CCGGCGTATGAAATCCAGCT 60.533 55.000 6.01 0.00 0.00 4.24
736 737 0.531974 TCCGGCGTATGAAATCCAGC 60.532 55.000 6.01 0.00 0.00 4.85
737 738 2.169832 ATCCGGCGTATGAAATCCAG 57.830 50.000 6.01 0.00 0.00 3.86
738 739 2.489971 GAATCCGGCGTATGAAATCCA 58.510 47.619 6.01 0.00 0.00 3.41
739 740 1.459592 CGAATCCGGCGTATGAAATCC 59.540 52.381 6.01 0.00 0.00 3.01
740 741 2.856091 CGAATCCGGCGTATGAAATC 57.144 50.000 6.01 0.00 0.00 2.17
752 753 2.978452 ATCTTCTGGCGCCGAATCCG 62.978 60.000 26.16 17.93 0.00 4.18
753 754 1.224722 GATCTTCTGGCGCCGAATCC 61.225 60.000 26.16 17.08 0.00 3.01
754 755 1.552348 CGATCTTCTGGCGCCGAATC 61.552 60.000 26.16 21.35 0.00 2.52
755 756 1.592669 CGATCTTCTGGCGCCGAAT 60.593 57.895 26.16 16.72 0.00 3.34
756 757 2.202743 CGATCTTCTGGCGCCGAA 60.203 61.111 23.90 24.57 0.00 4.30
757 758 4.873129 GCGATCTTCTGGCGCCGA 62.873 66.667 23.90 19.11 44.55 5.54
831 836 0.789383 GCGCACGTGCATTGTTAGTC 60.789 55.000 37.03 13.14 42.21 2.59
832 837 1.206578 GCGCACGTGCATTGTTAGT 59.793 52.632 37.03 0.00 42.21 2.24
833 838 1.511887 GGCGCACGTGCATTGTTAG 60.512 57.895 37.03 21.20 42.21 2.34
852 861 4.027437 TGTTAACTTTGGTTTTGCCTCCT 58.973 39.130 7.22 0.00 36.92 3.69
857 866 9.484326 CAAAATACTTGTTAACTTTGGTTTTGC 57.516 29.630 17.45 0.00 36.92 3.68
911 921 5.685841 TCAGTTAACAAGCGTTTTATCTGC 58.314 37.500 8.61 0.00 36.52 4.26
951 962 0.317160 CCGGCAACTTTTCTTTCCCC 59.683 55.000 0.00 0.00 0.00 4.81
953 964 1.679153 TGACCGGCAACTTTTCTTTCC 59.321 47.619 0.00 0.00 0.00 3.13
993 1009 4.689071 GAATCAAATCAATCATGCAGCCA 58.311 39.130 0.00 0.00 0.00 4.75
1141 1161 2.352127 GGTTATATACGACGGAGGGCAC 60.352 54.545 0.00 0.00 0.00 5.01
1188 1213 3.845625 GCACGCTTGCTTGTTAGTT 57.154 47.368 8.12 0.00 46.17 2.24
1299 1324 0.753262 GCGACCTCTCCCATGTGTAT 59.247 55.000 0.00 0.00 0.00 2.29
1303 1328 2.039624 AGGCGACCTCTCCCATGT 59.960 61.111 0.00 0.00 0.00 3.21
1304 1329 2.818132 GAGGCGACCTCTCCCATG 59.182 66.667 15.90 0.00 46.41 3.66
1350 1382 2.491621 CATCAGCAGCGAGGACGA 59.508 61.111 0.00 0.00 42.66 4.20
1542 1589 1.403814 AGGCAGTAGCGCTAGATGAA 58.596 50.000 26.06 2.51 43.41 2.57
1572 1619 2.733227 GAGAATCAATTGCGGTTGCAGG 60.733 50.000 0.00 0.00 44.45 4.85
1573 1620 2.163010 AGAGAATCAATTGCGGTTGCAG 59.837 45.455 0.00 0.00 46.67 4.41
1574 1621 2.161855 AGAGAATCAATTGCGGTTGCA 58.838 42.857 0.00 0.00 45.03 4.08
1575 1622 2.927553 AGAGAATCAATTGCGGTTGC 57.072 45.000 0.00 0.00 37.82 4.17
1576 1623 7.816945 AATAAAAGAGAATCAATTGCGGTTG 57.183 32.000 0.00 0.00 37.82 3.77
1577 1624 7.545615 GGAAATAAAAGAGAATCAATTGCGGTT 59.454 33.333 0.00 0.00 37.82 4.44
1578 1625 7.035612 GGAAATAAAAGAGAATCAATTGCGGT 58.964 34.615 0.00 0.00 37.82 5.68
1579 1626 7.009540 GTGGAAATAAAAGAGAATCAATTGCGG 59.990 37.037 0.00 0.00 37.82 5.69
1580 1627 7.253420 CGTGGAAATAAAAGAGAATCAATTGCG 60.253 37.037 0.00 0.00 37.82 4.85
1585 1632 5.391523 CGCCGTGGAAATAAAAGAGAATCAA 60.392 40.000 0.00 0.00 37.82 2.57
1608 1694 3.677121 CCTGTGAAGTTGTGATCTTCTCG 59.323 47.826 0.00 0.00 41.04 4.04
1620 1706 4.763793 CCAAGAATCATCACCTGTGAAGTT 59.236 41.667 3.79 0.13 43.58 2.66
1621 1707 4.202503 ACCAAGAATCATCACCTGTGAAGT 60.203 41.667 3.79 0.00 43.58 3.01
1622 1708 4.155462 CACCAAGAATCATCACCTGTGAAG 59.845 45.833 3.79 0.00 43.58 3.02
1623 1709 4.074259 CACCAAGAATCATCACCTGTGAA 58.926 43.478 3.79 0.00 43.58 3.18
1624 1710 3.678289 CACCAAGAATCATCACCTGTGA 58.322 45.455 1.93 1.93 44.59 3.58
1625 1711 2.163010 GCACCAAGAATCATCACCTGTG 59.837 50.000 0.00 0.00 0.00 3.66
1896 2004 2.488355 CCGACGAGCATACGGTGT 59.512 61.111 0.00 0.00 41.47 4.16
1916 2024 3.312504 CCGATACGTGCACGAGCG 61.313 66.667 42.94 34.70 46.23 5.03
1919 2027 2.202557 CAGCCGATACGTGCACGA 60.203 61.111 42.94 26.87 43.02 4.35
1920 2028 3.913573 GCAGCCGATACGTGCACG 61.914 66.667 35.99 35.99 46.33 5.34
2001 2113 3.853831 TTCGGACGAACTGCTGTTATA 57.146 42.857 9.14 0.00 36.39 0.98
2016 2136 2.984562 TGCTTGTTGATAGCATTCGGA 58.015 42.857 0.00 0.00 43.30 4.55
2027 2148 1.349026 CTCTCCCCTCTTGCTTGTTGA 59.651 52.381 0.00 0.00 0.00 3.18
2028 2149 1.349026 TCTCTCCCCTCTTGCTTGTTG 59.651 52.381 0.00 0.00 0.00 3.33
2029 2150 1.734655 TCTCTCCCCTCTTGCTTGTT 58.265 50.000 0.00 0.00 0.00 2.83
2030 2151 1.558756 CATCTCTCCCCTCTTGCTTGT 59.441 52.381 0.00 0.00 0.00 3.16
2058 2179 7.031975 GGAAAACATTTTGAGATCCATGACTC 58.968 38.462 0.00 0.90 0.00 3.36
2061 2182 6.572898 GCAGGAAAACATTTTGAGATCCATGA 60.573 38.462 0.00 0.00 0.00 3.07
2160 2306 1.067495 CCCGAAGAAGACTCGAAAGCT 60.067 52.381 0.00 0.00 0.00 3.74
2161 2307 1.067776 TCCCGAAGAAGACTCGAAAGC 60.068 52.381 0.00 0.00 0.00 3.51
2162 2308 2.030185 TGTCCCGAAGAAGACTCGAAAG 60.030 50.000 0.00 0.00 32.93 2.62
2163 2309 1.958579 TGTCCCGAAGAAGACTCGAAA 59.041 47.619 0.00 0.00 32.93 3.46
2164 2310 1.268899 GTGTCCCGAAGAAGACTCGAA 59.731 52.381 0.00 0.00 32.93 3.71
2184 2334 2.987149 AGAACACACGCTCAGATTAACG 59.013 45.455 0.00 0.00 0.00 3.18
2234 2384 4.382040 GCAGAAGACTAGCATACACAGGAA 60.382 45.833 0.00 0.00 0.00 3.36
2244 2394 4.019858 ACTACTGATGCAGAAGACTAGCA 58.980 43.478 5.48 0.00 43.14 3.49
2245 2395 4.647424 ACTACTGATGCAGAAGACTAGC 57.353 45.455 5.48 0.00 35.18 3.42
2249 2402 4.095185 ACGTCTACTACTGATGCAGAAGAC 59.905 45.833 5.48 7.41 35.18 3.01
2304 2495 4.701286 GGATCCGGTCCTGTAGGT 57.299 61.111 13.87 0.00 44.16 3.08
2526 2731 9.817809 GAAGTTTTCTTCCTAAGAACCAAATTT 57.182 29.630 1.67 0.00 46.53 1.82
2554 2759 2.189594 TTTGCACATCTCTCCTGGTG 57.810 50.000 0.00 0.00 0.00 4.17
2645 2864 3.136626 GCCATTTGGATAGGAGTGTAGGT 59.863 47.826 0.00 0.00 37.39 3.08
2650 2869 4.346418 AGAGTAGCCATTTGGATAGGAGTG 59.654 45.833 0.00 0.00 36.65 3.51
2702 2921 2.024305 GCGCATGAGCATGACAGC 59.976 61.111 17.16 11.27 41.20 4.40
2863 3099 9.350357 CATTTATGTCTGTTTTCCAATTGAGAG 57.650 33.333 7.12 0.00 0.00 3.20


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.