Multiple sequence alignment - TraesCS7B01G287600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G287600 chr7B 100.000 2459 0 0 1 2459 523626697 523624239 0.000000e+00 4542.0
1 TraesCS7B01G287600 chr7D 90.291 2163 114 31 364 2444 495341195 495339047 0.000000e+00 2743.0
2 TraesCS7B01G287600 chr7D 77.295 207 43 4 61 265 138647881 138648085 4.300000e-23 119.0
3 TraesCS7B01G287600 chr7A 92.427 1030 50 14 1445 2457 561175625 561174607 0.000000e+00 1445.0
4 TraesCS7B01G287600 chr7A 89.730 1110 66 27 364 1450 561176902 561175818 0.000000e+00 1375.0
5 TraesCS7B01G287600 chr7A 77.723 202 41 4 70 269 166789403 166789204 1.190000e-23 121.0
6 TraesCS7B01G287600 chr2B 77.557 352 73 6 1 349 758169493 758169841 8.910000e-50 207.0
7 TraesCS7B01G287600 chr4D 76.836 354 76 6 1 351 181458694 181458344 6.940000e-46 195.0
8 TraesCS7B01G287600 chr4D 76.487 353 79 4 1 351 181417963 181417613 3.230000e-44 189.0
9 TraesCS7B01G287600 chr4D 77.926 299 62 4 55 351 180671578 180671282 1.500000e-42 183.0
10 TraesCS7B01G287600 chr2D 79.111 225 39 8 46 267 526356285 526356504 5.480000e-32 148.0
11 TraesCS7B01G287600 chr3A 76.151 239 45 11 28 260 387850403 387850635 5.560000e-22 115.0
12 TraesCS7B01G287600 chr5B 77.914 163 28 6 54 212 661921583 661921425 7.240000e-16 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G287600 chr7B 523624239 523626697 2458 True 4542 4542 100.0000 1 2459 1 chr7B.!!$R1 2458
1 TraesCS7B01G287600 chr7D 495339047 495341195 2148 True 2743 2743 90.2910 364 2444 1 chr7D.!!$R1 2080
2 TraesCS7B01G287600 chr7A 561174607 561176902 2295 True 1410 1445 91.0785 364 2457 2 chr7A.!!$R2 2093

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
127 128 0.036388 TGTTCCGCATTGTCCTCCTC 60.036 55.0 0.0 0.0 0.0 3.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1762 2022 0.179189 GCATACAGTTGGAACGCTGC 60.179 55.0 0.0 0.0 37.44 5.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 4.606071 GTCCAGCAGACAATCGCT 57.394 55.556 2.27 0.00 45.55 4.93
23 24 2.378028 GTCCAGCAGACAATCGCTC 58.622 57.895 2.27 0.00 45.55 5.03
24 25 1.153765 TCCAGCAGACAATCGCTCG 60.154 57.895 0.00 0.00 35.96 5.03
25 26 2.169789 CCAGCAGACAATCGCTCGG 61.170 63.158 0.00 0.00 35.96 4.63
26 27 2.510238 AGCAGACAATCGCTCGGC 60.510 61.111 0.00 0.00 31.16 5.54
27 28 2.510238 GCAGACAATCGCTCGGCT 60.510 61.111 0.00 0.00 0.00 5.52
28 29 2.520904 GCAGACAATCGCTCGGCTC 61.521 63.158 0.00 0.00 0.00 4.70
29 30 1.880340 CAGACAATCGCTCGGCTCC 60.880 63.158 0.00 0.00 0.00 4.70
30 31 2.956964 GACAATCGCTCGGCTCCG 60.957 66.667 1.14 1.14 41.35 4.63
31 32 4.514577 ACAATCGCTCGGCTCCGG 62.515 66.667 8.59 0.00 40.25 5.14
37 38 4.593864 GCTCGGCTCCGGGATGAC 62.594 72.222 13.08 0.00 43.62 3.06
38 39 4.271816 CTCGGCTCCGGGATGACG 62.272 72.222 13.44 13.44 43.62 4.35
42 43 4.241555 GCTCCGGGATGACGCCAT 62.242 66.667 0.00 0.00 35.29 4.40
43 44 2.280389 CTCCGGGATGACGCCATG 60.280 66.667 0.00 0.00 32.09 3.66
44 45 4.545706 TCCGGGATGACGCCATGC 62.546 66.667 0.00 0.00 39.99 4.06
45 46 4.854924 CCGGGATGACGCCATGCA 62.855 66.667 5.47 0.00 42.15 3.96
46 47 3.576356 CGGGATGACGCCATGCAC 61.576 66.667 5.47 0.00 42.15 4.57
47 48 3.211963 GGGATGACGCCATGCACC 61.212 66.667 5.47 0.00 42.15 5.01
48 49 3.211963 GGATGACGCCATGCACCC 61.212 66.667 0.00 0.00 40.37 4.61
49 50 2.124570 GATGACGCCATGCACCCT 60.125 61.111 0.00 0.00 32.09 4.34
50 51 1.146041 GATGACGCCATGCACCCTA 59.854 57.895 0.00 0.00 32.09 3.53
51 52 0.463654 GATGACGCCATGCACCCTAA 60.464 55.000 0.00 0.00 32.09 2.69
52 53 0.464373 ATGACGCCATGCACCCTAAG 60.464 55.000 0.00 0.00 0.00 2.18
53 54 1.220749 GACGCCATGCACCCTAAGA 59.779 57.895 0.00 0.00 0.00 2.10
54 55 0.811616 GACGCCATGCACCCTAAGAG 60.812 60.000 0.00 0.00 0.00 2.85
55 56 2.182842 CGCCATGCACCCTAAGAGC 61.183 63.158 0.00 0.00 0.00 4.09
56 57 1.077501 GCCATGCACCCTAAGAGCA 60.078 57.895 0.00 0.00 43.14 4.26
58 59 1.602311 CCATGCACCCTAAGAGCATC 58.398 55.000 0.00 0.00 46.39 3.91
59 60 1.224075 CATGCACCCTAAGAGCATCG 58.776 55.000 0.00 0.00 46.39 3.84
60 61 1.123077 ATGCACCCTAAGAGCATCGA 58.877 50.000 0.00 0.00 45.11 3.59
61 62 0.901827 TGCACCCTAAGAGCATCGAA 59.098 50.000 0.00 0.00 42.67 3.71
62 63 1.134699 TGCACCCTAAGAGCATCGAAG 60.135 52.381 0.00 0.00 42.67 3.79
63 64 1.137086 GCACCCTAAGAGCATCGAAGA 59.863 52.381 0.00 0.00 42.67 2.87
64 65 2.224161 GCACCCTAAGAGCATCGAAGAT 60.224 50.000 0.00 0.00 45.12 2.40
65 66 3.388308 CACCCTAAGAGCATCGAAGATG 58.612 50.000 5.71 5.71 45.12 2.90
66 67 3.034635 ACCCTAAGAGCATCGAAGATGT 58.965 45.455 11.12 0.00 45.12 3.06
67 68 4.038042 CACCCTAAGAGCATCGAAGATGTA 59.962 45.833 11.12 0.00 45.12 2.29
68 69 4.279671 ACCCTAAGAGCATCGAAGATGTAG 59.720 45.833 11.12 5.50 45.12 2.74
69 70 4.279671 CCCTAAGAGCATCGAAGATGTAGT 59.720 45.833 11.12 0.00 45.12 2.73
70 71 5.218885 CCTAAGAGCATCGAAGATGTAGTG 58.781 45.833 11.12 0.00 45.12 2.74
71 72 3.090952 AGAGCATCGAAGATGTAGTGC 57.909 47.619 11.12 0.00 45.12 4.40
72 73 2.131183 GAGCATCGAAGATGTAGTGCC 58.869 52.381 11.12 0.00 45.12 5.01
73 74 1.482182 AGCATCGAAGATGTAGTGCCA 59.518 47.619 11.12 0.00 45.12 4.92
74 75 1.863454 GCATCGAAGATGTAGTGCCAG 59.137 52.381 11.12 0.00 45.12 4.85
75 76 2.481969 GCATCGAAGATGTAGTGCCAGA 60.482 50.000 11.12 0.00 45.12 3.86
76 77 2.941453 TCGAAGATGTAGTGCCAGAC 57.059 50.000 0.00 0.00 0.00 3.51
77 78 1.476891 TCGAAGATGTAGTGCCAGACC 59.523 52.381 0.00 0.00 0.00 3.85
78 79 1.478510 CGAAGATGTAGTGCCAGACCT 59.521 52.381 0.00 0.00 0.00 3.85
79 80 2.480416 CGAAGATGTAGTGCCAGACCTC 60.480 54.545 0.00 0.00 0.00 3.85
80 81 2.541233 AGATGTAGTGCCAGACCTCT 57.459 50.000 0.00 0.00 0.00 3.69
81 82 2.383855 AGATGTAGTGCCAGACCTCTC 58.616 52.381 0.00 0.00 0.00 3.20
82 83 2.024464 AGATGTAGTGCCAGACCTCTCT 60.024 50.000 0.00 0.00 0.00 3.10
83 84 3.203263 AGATGTAGTGCCAGACCTCTCTA 59.797 47.826 0.00 0.00 0.00 2.43
84 85 3.006112 TGTAGTGCCAGACCTCTCTAG 57.994 52.381 0.00 0.00 0.00 2.43
85 86 1.679153 GTAGTGCCAGACCTCTCTAGC 59.321 57.143 0.00 0.00 32.17 3.42
86 87 1.034838 AGTGCCAGACCTCTCTAGCG 61.035 60.000 0.00 0.00 34.11 4.26
87 88 1.000771 TGCCAGACCTCTCTAGCGT 60.001 57.895 0.00 0.00 34.11 5.07
88 89 0.255033 TGCCAGACCTCTCTAGCGTA 59.745 55.000 0.00 0.00 34.11 4.42
89 90 0.948678 GCCAGACCTCTCTAGCGTAG 59.051 60.000 0.00 0.00 0.00 3.51
90 91 1.475392 GCCAGACCTCTCTAGCGTAGA 60.475 57.143 0.00 0.00 0.00 2.59
91 92 2.215196 CCAGACCTCTCTAGCGTAGAC 58.785 57.143 0.00 0.00 0.00 2.59
92 93 2.420269 CCAGACCTCTCTAGCGTAGACA 60.420 54.545 0.00 0.00 0.00 3.41
93 94 2.610374 CAGACCTCTCTAGCGTAGACAC 59.390 54.545 0.00 0.00 0.00 3.67
94 95 2.236644 AGACCTCTCTAGCGTAGACACA 59.763 50.000 0.00 0.00 0.00 3.72
95 96 3.118186 AGACCTCTCTAGCGTAGACACAT 60.118 47.826 0.00 0.00 0.00 3.21
96 97 3.622630 ACCTCTCTAGCGTAGACACATT 58.377 45.455 0.00 0.00 0.00 2.71
97 98 3.378742 ACCTCTCTAGCGTAGACACATTG 59.621 47.826 0.00 0.00 0.00 2.82
98 99 3.243234 CCTCTCTAGCGTAGACACATTGG 60.243 52.174 0.00 0.00 0.00 3.16
99 100 3.617284 TCTCTAGCGTAGACACATTGGA 58.383 45.455 0.00 0.00 0.00 3.53
100 101 4.207955 TCTCTAGCGTAGACACATTGGAT 58.792 43.478 0.00 0.00 0.00 3.41
101 102 5.374071 TCTCTAGCGTAGACACATTGGATA 58.626 41.667 0.00 0.00 0.00 2.59
102 103 5.826208 TCTCTAGCGTAGACACATTGGATAA 59.174 40.000 0.00 0.00 0.00 1.75
103 104 6.017026 TCTCTAGCGTAGACACATTGGATAAG 60.017 42.308 0.00 0.00 0.00 1.73
104 105 4.060038 AGCGTAGACACATTGGATAAGG 57.940 45.455 0.00 0.00 0.00 2.69
105 106 3.704566 AGCGTAGACACATTGGATAAGGA 59.295 43.478 0.00 0.00 0.00 3.36
106 107 4.345257 AGCGTAGACACATTGGATAAGGAT 59.655 41.667 0.00 0.00 0.00 3.24
107 108 5.538813 AGCGTAGACACATTGGATAAGGATA 59.461 40.000 0.00 0.00 0.00 2.59
108 109 6.211584 AGCGTAGACACATTGGATAAGGATAT 59.788 38.462 0.00 0.00 0.00 1.63
109 110 6.311445 GCGTAGACACATTGGATAAGGATATG 59.689 42.308 0.00 0.00 0.00 1.78
110 111 7.378966 CGTAGACACATTGGATAAGGATATGT 58.621 38.462 0.00 0.00 0.00 2.29
111 112 7.872993 CGTAGACACATTGGATAAGGATATGTT 59.127 37.037 0.00 0.00 0.00 2.71
112 113 9.209175 GTAGACACATTGGATAAGGATATGTTC 57.791 37.037 0.00 0.00 0.00 3.18
113 114 7.227156 AGACACATTGGATAAGGATATGTTCC 58.773 38.462 0.00 0.00 45.85 3.62
123 124 2.851195 GGATATGTTCCGCATTGTCCT 58.149 47.619 0.00 0.00 37.78 3.85
124 125 2.808543 GGATATGTTCCGCATTGTCCTC 59.191 50.000 0.00 0.00 37.78 3.71
125 126 2.325583 TATGTTCCGCATTGTCCTCC 57.674 50.000 0.00 0.00 38.94 4.30
126 127 0.620556 ATGTTCCGCATTGTCCTCCT 59.379 50.000 0.00 0.00 33.14 3.69
127 128 0.036388 TGTTCCGCATTGTCCTCCTC 60.036 55.000 0.00 0.00 0.00 3.71
128 129 0.250513 GTTCCGCATTGTCCTCCTCT 59.749 55.000 0.00 0.00 0.00 3.69
129 130 0.984230 TTCCGCATTGTCCTCCTCTT 59.016 50.000 0.00 0.00 0.00 2.85
130 131 0.250234 TCCGCATTGTCCTCCTCTTG 59.750 55.000 0.00 0.00 0.00 3.02
131 132 0.745845 CCGCATTGTCCTCCTCTTGG 60.746 60.000 0.00 0.00 0.00 3.61
132 133 0.250234 CGCATTGTCCTCCTCTTGGA 59.750 55.000 0.00 0.00 40.69 3.53
141 142 2.743718 CCTCTTGGAGGCACGTGT 59.256 61.111 18.38 0.00 43.29 4.49
142 143 1.972198 CCTCTTGGAGGCACGTGTA 59.028 57.895 18.38 0.00 43.29 2.90
143 144 0.108615 CCTCTTGGAGGCACGTGTAG 60.109 60.000 18.38 5.64 43.29 2.74
144 145 0.737715 CTCTTGGAGGCACGTGTAGC 60.738 60.000 18.38 2.03 0.00 3.58
145 146 1.005037 CTTGGAGGCACGTGTAGCA 60.005 57.895 18.38 0.00 0.00 3.49
146 147 1.005037 TTGGAGGCACGTGTAGCAG 60.005 57.895 18.38 0.00 0.00 4.24
147 148 2.125512 GGAGGCACGTGTAGCAGG 60.126 66.667 18.38 0.00 0.00 4.85
148 149 2.815647 GAGGCACGTGTAGCAGGC 60.816 66.667 18.38 1.62 0.00 4.85
149 150 4.742201 AGGCACGTGTAGCAGGCG 62.742 66.667 18.38 0.00 0.00 5.52
151 152 4.735132 GCACGTGTAGCAGGCGGA 62.735 66.667 18.38 0.00 0.00 5.54
152 153 2.507102 CACGTGTAGCAGGCGGAG 60.507 66.667 7.58 0.00 0.00 4.63
153 154 3.760035 ACGTGTAGCAGGCGGAGG 61.760 66.667 0.00 0.00 0.00 4.30
154 155 3.449227 CGTGTAGCAGGCGGAGGA 61.449 66.667 0.00 0.00 0.00 3.71
155 156 2.978824 GTGTAGCAGGCGGAGGAA 59.021 61.111 0.00 0.00 0.00 3.36
156 157 1.153549 GTGTAGCAGGCGGAGGAAG 60.154 63.158 0.00 0.00 0.00 3.46
157 158 1.304962 TGTAGCAGGCGGAGGAAGA 60.305 57.895 0.00 0.00 0.00 2.87
158 159 1.323271 TGTAGCAGGCGGAGGAAGAG 61.323 60.000 0.00 0.00 0.00 2.85
159 160 1.000486 TAGCAGGCGGAGGAAGAGT 60.000 57.895 0.00 0.00 0.00 3.24
160 161 1.038130 TAGCAGGCGGAGGAAGAGTC 61.038 60.000 0.00 0.00 0.00 3.36
161 162 2.896443 CAGGCGGAGGAAGAGTCC 59.104 66.667 0.00 0.00 45.35 3.85
169 170 2.270527 GGAAGAGTCCTGCAGGCC 59.729 66.667 28.91 18.41 41.24 5.19
170 171 2.125350 GAAGAGTCCTGCAGGCCG 60.125 66.667 28.91 4.82 34.44 6.13
171 172 2.925170 AAGAGTCCTGCAGGCCGT 60.925 61.111 28.91 14.44 34.44 5.68
172 173 3.245668 AAGAGTCCTGCAGGCCGTG 62.246 63.158 28.91 3.97 34.44 4.94
190 191 2.067365 TGCCTAGCACTTCTATCCGA 57.933 50.000 0.00 0.00 31.71 4.55
191 192 2.384828 TGCCTAGCACTTCTATCCGAA 58.615 47.619 0.00 0.00 31.71 4.30
201 202 4.513198 CTTCTATCCGAAGTCCAGATCC 57.487 50.000 0.00 0.00 43.35 3.36
202 203 2.505405 TCTATCCGAAGTCCAGATCCG 58.495 52.381 0.00 0.00 0.00 4.18
203 204 2.105993 TCTATCCGAAGTCCAGATCCGA 59.894 50.000 0.00 0.00 0.00 4.55
204 205 2.002505 ATCCGAAGTCCAGATCCGAT 57.997 50.000 0.00 0.00 0.00 4.18
205 206 1.032794 TCCGAAGTCCAGATCCGATG 58.967 55.000 0.00 0.00 0.00 3.84
206 207 0.598680 CCGAAGTCCAGATCCGATGC 60.599 60.000 0.00 0.00 0.00 3.91
207 208 0.387202 CGAAGTCCAGATCCGATGCT 59.613 55.000 0.00 0.00 0.00 3.79
208 209 1.863267 GAAGTCCAGATCCGATGCTG 58.137 55.000 0.00 0.00 0.00 4.41
209 210 1.410517 GAAGTCCAGATCCGATGCTGA 59.589 52.381 8.55 0.00 34.06 4.26
210 211 1.489481 AGTCCAGATCCGATGCTGAA 58.511 50.000 8.55 0.00 34.06 3.02
211 212 1.137872 AGTCCAGATCCGATGCTGAAC 59.862 52.381 8.55 1.22 34.06 3.18
212 213 1.137872 GTCCAGATCCGATGCTGAACT 59.862 52.381 8.55 0.00 34.06 3.01
213 214 2.362397 GTCCAGATCCGATGCTGAACTA 59.638 50.000 8.55 0.00 34.06 2.24
214 215 3.006323 GTCCAGATCCGATGCTGAACTAT 59.994 47.826 8.55 0.00 34.06 2.12
215 216 3.256879 TCCAGATCCGATGCTGAACTATC 59.743 47.826 8.55 0.00 34.06 2.08
216 217 3.006217 CCAGATCCGATGCTGAACTATCA 59.994 47.826 8.55 0.00 34.06 2.15
217 218 4.502087 CCAGATCCGATGCTGAACTATCAA 60.502 45.833 8.55 0.00 34.49 2.57
218 219 4.447054 CAGATCCGATGCTGAACTATCAAC 59.553 45.833 0.00 0.00 34.49 3.18
219 220 3.179443 TCCGATGCTGAACTATCAACC 57.821 47.619 0.00 0.00 34.49 3.77
220 221 2.499693 TCCGATGCTGAACTATCAACCA 59.500 45.455 0.00 0.00 34.49 3.67
221 222 2.609459 CCGATGCTGAACTATCAACCAC 59.391 50.000 0.00 0.00 34.49 4.16
222 223 3.261580 CGATGCTGAACTATCAACCACA 58.738 45.455 0.00 0.00 34.49 4.17
223 224 3.062639 CGATGCTGAACTATCAACCACAC 59.937 47.826 0.00 0.00 34.49 3.82
224 225 2.412870 TGCTGAACTATCAACCACACG 58.587 47.619 0.00 0.00 34.49 4.49
225 226 2.036604 TGCTGAACTATCAACCACACGA 59.963 45.455 0.00 0.00 34.49 4.35
226 227 3.064207 GCTGAACTATCAACCACACGAA 58.936 45.455 0.00 0.00 34.49 3.85
227 228 3.123621 GCTGAACTATCAACCACACGAAG 59.876 47.826 0.00 0.00 34.49 3.79
228 229 4.556233 CTGAACTATCAACCACACGAAGA 58.444 43.478 0.00 0.00 34.49 2.87
229 230 5.147330 TGAACTATCAACCACACGAAGAT 57.853 39.130 0.00 0.00 30.99 2.40
230 231 5.547465 TGAACTATCAACCACACGAAGATT 58.453 37.500 0.00 0.00 30.99 2.40
231 232 5.995282 TGAACTATCAACCACACGAAGATTT 59.005 36.000 0.00 0.00 30.99 2.17
232 233 6.485313 TGAACTATCAACCACACGAAGATTTT 59.515 34.615 0.00 0.00 30.99 1.82
233 234 6.241207 ACTATCAACCACACGAAGATTTTG 57.759 37.500 0.00 0.00 0.00 2.44
234 235 3.347958 TCAACCACACGAAGATTTTGC 57.652 42.857 0.00 0.00 0.00 3.68
235 236 2.685388 TCAACCACACGAAGATTTTGCA 59.315 40.909 0.00 0.00 0.00 4.08
236 237 3.317711 TCAACCACACGAAGATTTTGCAT 59.682 39.130 0.00 0.00 0.00 3.96
237 238 4.050553 CAACCACACGAAGATTTTGCATT 58.949 39.130 0.00 0.00 0.00 3.56
238 239 4.320608 ACCACACGAAGATTTTGCATTT 57.679 36.364 0.00 0.00 0.00 2.32
239 240 4.050553 ACCACACGAAGATTTTGCATTTG 58.949 39.130 0.00 0.00 0.00 2.32
240 241 4.202101 ACCACACGAAGATTTTGCATTTGA 60.202 37.500 0.00 0.00 0.00 2.69
241 242 4.383649 CCACACGAAGATTTTGCATTTGAG 59.616 41.667 0.00 0.00 0.00 3.02
242 243 3.983344 ACACGAAGATTTTGCATTTGAGC 59.017 39.130 0.00 0.00 0.00 4.26
243 244 3.982701 CACGAAGATTTTGCATTTGAGCA 59.017 39.130 0.00 0.00 43.99 4.26
250 251 3.435846 TGCATTTGAGCAAGTCCCA 57.564 47.368 0.00 0.00 42.46 4.37
251 252 1.250328 TGCATTTGAGCAAGTCCCAG 58.750 50.000 0.00 0.00 42.46 4.45
252 253 0.108945 GCATTTGAGCAAGTCCCAGC 60.109 55.000 0.00 0.00 0.00 4.85
253 254 1.542492 CATTTGAGCAAGTCCCAGCT 58.458 50.000 0.00 0.00 45.25 4.24
258 259 1.682257 AGCAAGTCCCAGCTCTTCC 59.318 57.895 0.00 0.00 36.00 3.46
259 260 1.130054 AGCAAGTCCCAGCTCTTCCA 61.130 55.000 0.00 0.00 36.00 3.53
260 261 0.250901 GCAAGTCCCAGCTCTTCCAA 60.251 55.000 0.00 0.00 0.00 3.53
261 262 1.819305 GCAAGTCCCAGCTCTTCCAAA 60.819 52.381 0.00 0.00 0.00 3.28
262 263 2.800250 CAAGTCCCAGCTCTTCCAAAT 58.200 47.619 0.00 0.00 0.00 2.32
263 264 2.490903 CAAGTCCCAGCTCTTCCAAATG 59.509 50.000 0.00 0.00 0.00 2.32
264 265 0.813821 GTCCCAGCTCTTCCAAATGC 59.186 55.000 0.00 0.00 0.00 3.56
265 266 0.405198 TCCCAGCTCTTCCAAATGCA 59.595 50.000 0.00 0.00 0.00 3.96
266 267 1.203038 TCCCAGCTCTTCCAAATGCAA 60.203 47.619 0.00 0.00 0.00 4.08
267 268 1.203994 CCCAGCTCTTCCAAATGCAAG 59.796 52.381 0.00 0.00 0.00 4.01
268 269 1.403780 CCAGCTCTTCCAAATGCAAGC 60.404 52.381 0.00 0.00 0.00 4.01
269 270 1.271379 CAGCTCTTCCAAATGCAAGCA 59.729 47.619 5.62 0.00 32.25 3.91
270 271 1.271656 AGCTCTTCCAAATGCAAGCAC 59.728 47.619 5.62 0.00 32.25 4.40
271 272 1.670967 GCTCTTCCAAATGCAAGCACC 60.671 52.381 0.00 0.00 0.00 5.01
272 273 0.597568 TCTTCCAAATGCAAGCACCG 59.402 50.000 0.00 0.00 0.00 4.94
273 274 0.597568 CTTCCAAATGCAAGCACCGA 59.402 50.000 0.00 0.00 0.00 4.69
274 275 1.000385 CTTCCAAATGCAAGCACCGAA 60.000 47.619 0.00 0.00 0.00 4.30
275 276 0.313672 TCCAAATGCAAGCACCGAAC 59.686 50.000 0.00 0.00 0.00 3.95
276 277 1.003262 CCAAATGCAAGCACCGAACG 61.003 55.000 0.00 0.00 0.00 3.95
277 278 1.003262 CAAATGCAAGCACCGAACGG 61.003 55.000 11.83 11.83 42.03 4.44
278 279 1.169661 AAATGCAAGCACCGAACGGA 61.170 50.000 20.14 0.00 38.96 4.69
279 280 1.577328 AATGCAAGCACCGAACGGAG 61.577 55.000 20.14 13.02 38.96 4.63
285 286 4.796231 CACCGAACGGAGCCCTCG 62.796 72.222 20.14 0.00 38.96 4.63
298 299 4.529219 CCTCGCGCTACCCATGCA 62.529 66.667 5.56 0.00 0.00 3.96
299 300 2.280389 CTCGCGCTACCCATGCAT 60.280 61.111 5.56 0.00 0.00 3.96
300 301 1.006220 CTCGCGCTACCCATGCATA 60.006 57.895 5.56 0.00 0.00 3.14
301 302 1.006220 TCGCGCTACCCATGCATAG 60.006 57.895 5.56 0.00 0.00 2.23
302 303 2.671177 CGCGCTACCCATGCATAGC 61.671 63.158 5.56 8.82 40.40 2.97
303 304 2.328099 GCGCTACCCATGCATAGCC 61.328 63.158 12.46 3.54 40.66 3.93
304 305 1.372683 CGCTACCCATGCATAGCCT 59.627 57.895 12.46 0.00 40.66 4.58
305 306 0.952497 CGCTACCCATGCATAGCCTG 60.952 60.000 12.46 0.00 40.66 4.85
306 307 0.397941 GCTACCCATGCATAGCCTGA 59.602 55.000 7.80 0.00 38.29 3.86
307 308 1.202806 GCTACCCATGCATAGCCTGAA 60.203 52.381 7.80 0.00 38.29 3.02
308 309 2.775890 CTACCCATGCATAGCCTGAAG 58.224 52.381 0.00 0.00 0.00 3.02
309 310 0.921896 ACCCATGCATAGCCTGAAGT 59.078 50.000 0.00 0.00 0.00 3.01
310 311 2.126882 ACCCATGCATAGCCTGAAGTA 58.873 47.619 0.00 0.00 0.00 2.24
311 312 2.105477 ACCCATGCATAGCCTGAAGTAG 59.895 50.000 0.00 0.00 0.00 2.57
323 324 4.487714 CCTGAAGTAGGTGGATTTAGCA 57.512 45.455 0.00 0.00 42.00 3.49
324 325 4.446371 CCTGAAGTAGGTGGATTTAGCAG 58.554 47.826 0.00 0.00 42.00 4.24
325 326 4.080863 CCTGAAGTAGGTGGATTTAGCAGT 60.081 45.833 0.00 0.00 42.00 4.40
326 327 4.832248 TGAAGTAGGTGGATTTAGCAGTG 58.168 43.478 0.00 0.00 0.00 3.66
327 328 4.286032 TGAAGTAGGTGGATTTAGCAGTGT 59.714 41.667 0.00 0.00 0.00 3.55
328 329 5.482526 TGAAGTAGGTGGATTTAGCAGTGTA 59.517 40.000 0.00 0.00 0.00 2.90
329 330 6.156256 TGAAGTAGGTGGATTTAGCAGTGTAT 59.844 38.462 0.00 0.00 0.00 2.29
330 331 5.918608 AGTAGGTGGATTTAGCAGTGTATG 58.081 41.667 0.00 0.00 0.00 2.39
331 332 4.844349 AGGTGGATTTAGCAGTGTATGT 57.156 40.909 0.00 0.00 0.00 2.29
332 333 4.517285 AGGTGGATTTAGCAGTGTATGTG 58.483 43.478 0.00 0.00 0.00 3.21
333 334 3.065371 GGTGGATTTAGCAGTGTATGTGC 59.935 47.826 0.00 0.00 41.54 4.57
334 335 3.065371 GTGGATTTAGCAGTGTATGTGCC 59.935 47.826 0.00 0.00 42.24 5.01
335 336 2.618709 GGATTTAGCAGTGTATGTGCCC 59.381 50.000 0.00 0.00 42.24 5.36
336 337 1.732941 TTTAGCAGTGTATGTGCCCG 58.267 50.000 0.00 0.00 42.24 6.13
337 338 0.899019 TTAGCAGTGTATGTGCCCGA 59.101 50.000 0.00 0.00 42.24 5.14
338 339 0.899019 TAGCAGTGTATGTGCCCGAA 59.101 50.000 0.00 0.00 42.24 4.30
339 340 0.391661 AGCAGTGTATGTGCCCGAAG 60.392 55.000 0.00 0.00 42.24 3.79
361 362 4.856607 CGCCGGCGAGAAGGAGTC 62.857 72.222 44.86 0.00 42.83 3.36
362 363 3.760035 GCCGGCGAGAAGGAGTCA 61.760 66.667 12.58 0.00 0.00 3.41
370 371 1.202582 CGAGAAGGAGTCATGTTCGGT 59.797 52.381 0.00 0.00 0.00 4.69
382 383 3.572255 TCATGTTCGGTGGATATCGATCA 59.428 43.478 0.00 0.00 41.69 2.92
422 423 1.790838 CGTCTGCAGCAGTAGTACGTC 60.791 57.143 22.10 3.63 31.72 4.34
424 425 1.468914 TCTGCAGCAGTAGTACGTCTG 59.531 52.381 22.10 15.90 32.61 3.51
501 507 3.052954 CCAGCCAAGCACATGCAA 58.947 55.556 6.64 0.00 45.16 4.08
513 519 3.261390 AGCACATGCAACCAACCAATTAT 59.739 39.130 6.64 0.00 45.16 1.28
656 684 2.787994 CTCCAGACACAGCAATTTCCT 58.212 47.619 0.00 0.00 0.00 3.36
663 691 5.987347 CAGACACAGCAATTTCCTTTTCATT 59.013 36.000 0.00 0.00 0.00 2.57
665 693 7.115378 CAGACACAGCAATTTCCTTTTCATTAC 59.885 37.037 0.00 0.00 0.00 1.89
677 705 7.775053 TCCTTTTCATTACTTAGGCAAATGT 57.225 32.000 0.00 0.00 33.35 2.71
706 739 1.003580 GCACTTTCACCATCTCCTCCA 59.996 52.381 0.00 0.00 0.00 3.86
719 752 2.889045 TCTCCTCCATATTTCCGTACGG 59.111 50.000 28.66 28.66 0.00 4.02
742 777 1.133761 TCTCCGGTGAGAAGGATCGAT 60.134 52.381 0.00 0.00 44.62 3.59
903 938 0.314935 CAAGGATGCCGCAACAAACT 59.685 50.000 0.00 0.00 0.00 2.66
907 942 1.398390 GGATGCCGCAACAAACTAGAG 59.602 52.381 0.00 0.00 0.00 2.43
988 1023 2.224018 GCTTTTGTGCCCATCAAGAACA 60.224 45.455 0.00 0.00 0.00 3.18
1047 1082 2.543031 GGTCGGGAAGAAACTGCAAAAC 60.543 50.000 0.00 0.00 0.00 2.43
1055 1090 4.918810 AGAAACTGCAAAACGATTTCCT 57.081 36.364 0.00 0.00 31.05 3.36
1059 1094 4.489679 ACTGCAAAACGATTTCCTCTTC 57.510 40.909 0.00 0.00 0.00 2.87
1067 1102 1.000145 GATTTCCTCTTCGTCCACGC 59.000 55.000 0.00 0.00 39.60 5.34
1090 1128 3.438087 CCAGAAACGCATGAATCTTCAGT 59.562 43.478 0.00 0.00 41.08 3.41
1093 1131 2.768253 ACGCATGAATCTTCAGTGGA 57.232 45.000 0.00 0.00 41.08 4.02
1172 1218 5.798132 CGGAAAGAGATGGATGGATAATCA 58.202 41.667 0.00 0.00 36.98 2.57
1316 1365 4.265856 AGGCGGAGATATATGGGATACA 57.734 45.455 0.00 0.00 39.74 2.29
1356 1405 3.624861 GGATTGTCGAGATCATGCTTGTT 59.375 43.478 10.03 0.00 0.00 2.83
1398 1447 0.179094 AGACGTGTCCGCTTGTTTCA 60.179 50.000 0.00 0.00 37.70 2.69
1440 1497 6.823182 TGAAACAGCAGCAGTATACATATGTT 59.177 34.615 14.77 4.83 0.00 2.71
1549 1808 6.405176 GGGAAGTTCATCTTTCCTGCTAATTG 60.405 42.308 5.01 0.00 45.91 2.32
1599 1858 5.777732 TGTGCAACTAATTTAGGGGAAACAT 59.222 36.000 8.26 0.00 38.04 2.71
1617 1876 8.376270 GGGAAACATACATAGCTATTAAGGACT 58.624 37.037 2.64 0.00 0.00 3.85
1737 1997 4.529109 TTCAATACGTGTCATCACCTGA 57.471 40.909 0.00 0.00 41.09 3.86
1751 2011 2.711922 CCTGAACCGCTCTACGCCT 61.712 63.158 0.00 0.00 41.76 5.52
1752 2012 1.517257 CTGAACCGCTCTACGCCTG 60.517 63.158 0.00 0.00 41.76 4.85
1753 2013 2.214181 CTGAACCGCTCTACGCCTGT 62.214 60.000 0.00 0.00 41.76 4.00
1755 2015 2.488087 GAACCGCTCTACGCCTGTGT 62.488 60.000 0.00 0.00 41.76 3.72
1756 2016 1.246056 AACCGCTCTACGCCTGTGTA 61.246 55.000 0.00 0.00 41.76 2.90
1757 2017 1.226603 CCGCTCTACGCCTGTGTAC 60.227 63.158 0.00 0.00 41.76 2.90
1758 2018 1.504900 CGCTCTACGCCTGTGTACA 59.495 57.895 0.00 0.00 34.21 2.90
1759 2019 0.100682 CGCTCTACGCCTGTGTACAT 59.899 55.000 0.00 0.00 34.21 2.29
1762 2022 0.736636 TCTACGCCTGTGTACATCGG 59.263 55.000 0.00 3.81 0.00 4.18
1806 2068 1.234615 GCTAACACTTGGGCAGCGAA 61.235 55.000 0.00 0.00 0.00 4.70
1873 2137 5.024785 TGATGACCCATTGATCCAATGTTT 58.975 37.500 15.78 4.95 46.69 2.83
1895 2185 8.079203 TGTTTACTAACCAGCAAACATTACATG 58.921 33.333 0.00 0.00 41.18 3.21
2122 2412 0.951040 GCCACGTCTACAGCAGCTTT 60.951 55.000 0.00 0.00 0.00 3.51
2182 2472 3.423154 GCCTTCGCCAACCTCGTG 61.423 66.667 0.00 0.00 0.00 4.35
2230 2520 5.480205 GTCCACAAAAACTCCTCCTACTAG 58.520 45.833 0.00 0.00 0.00 2.57
2262 2553 3.344215 GCCGCTGCTGATCCATCG 61.344 66.667 0.00 0.00 33.53 3.84
2280 2571 2.891936 TGCACGCATCGGAGATGC 60.892 61.111 21.21 21.21 45.12 3.91
2336 2629 0.038892 TGTGAACTAACGGTCTCGGC 60.039 55.000 0.00 0.00 41.39 5.54
2337 2630 0.243095 GTGAACTAACGGTCTCGGCT 59.757 55.000 0.00 0.00 41.39 5.52
2342 2635 2.440409 ACTAACGGTCTCGGCTTTAGA 58.560 47.619 0.00 0.00 41.39 2.10
2361 2654 3.880610 AGACGCGTTGGTTTGATTTAAC 58.119 40.909 15.53 0.00 0.00 2.01
2439 2732 8.650143 ACAAATGTATGGAGGATTTTACTTGT 57.350 30.769 0.00 0.00 0.00 3.16
2444 2740 9.920946 ATGTATGGAGGATTTTACTTGTTATGT 57.079 29.630 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.446907 GATTGTCTGCTGGACTGGTG 58.553 55.000 10.66 0.00 44.74 4.17
1 2 0.036952 CGATTGTCTGCTGGACTGGT 60.037 55.000 10.66 0.00 44.74 4.00
2 3 1.364626 GCGATTGTCTGCTGGACTGG 61.365 60.000 10.66 1.38 44.74 4.00
3 4 0.390866 AGCGATTGTCTGCTGGACTG 60.391 55.000 10.66 2.04 44.74 3.51
4 5 0.108424 GAGCGATTGTCTGCTGGACT 60.108 55.000 10.66 0.00 44.74 3.85
5 6 1.416813 CGAGCGATTGTCTGCTGGAC 61.417 60.000 0.00 3.96 42.60 4.02
6 7 1.153765 CGAGCGATTGTCTGCTGGA 60.154 57.895 0.00 0.00 42.60 3.86
7 8 2.169789 CCGAGCGATTGTCTGCTGG 61.170 63.158 0.00 0.00 42.60 4.85
8 9 2.806856 GCCGAGCGATTGTCTGCTG 61.807 63.158 0.00 0.00 42.60 4.41
9 10 2.510238 GCCGAGCGATTGTCTGCT 60.510 61.111 0.00 0.00 45.90 4.24
10 11 2.510238 AGCCGAGCGATTGTCTGC 60.510 61.111 0.00 0.00 0.00 4.26
11 12 1.880340 GGAGCCGAGCGATTGTCTG 60.880 63.158 0.00 0.00 0.00 3.51
12 13 2.496817 GGAGCCGAGCGATTGTCT 59.503 61.111 0.00 0.00 0.00 3.41
13 14 2.956964 CGGAGCCGAGCGATTGTC 60.957 66.667 2.00 0.00 42.83 3.18
14 15 4.514577 CCGGAGCCGAGCGATTGT 62.515 66.667 11.05 0.00 42.83 2.71
20 21 4.593864 GTCATCCCGGAGCCGAGC 62.594 72.222 11.05 0.00 42.83 5.03
21 22 4.271816 CGTCATCCCGGAGCCGAG 62.272 72.222 11.05 0.00 42.83 4.63
25 26 4.241555 ATGGCGTCATCCCGGAGC 62.242 66.667 0.73 0.00 0.00 4.70
26 27 2.280389 CATGGCGTCATCCCGGAG 60.280 66.667 0.73 0.00 0.00 4.63
27 28 4.545706 GCATGGCGTCATCCCGGA 62.546 66.667 0.73 0.00 0.00 5.14
28 29 4.854924 TGCATGGCGTCATCCCGG 62.855 66.667 0.00 0.00 0.00 5.73
29 30 3.576356 GTGCATGGCGTCATCCCG 61.576 66.667 0.00 0.00 0.00 5.14
30 31 3.211963 GGTGCATGGCGTCATCCC 61.212 66.667 0.00 0.00 0.00 3.85
31 32 2.324014 TAGGGTGCATGGCGTCATCC 62.324 60.000 0.00 0.00 33.70 3.51
32 33 0.463654 TTAGGGTGCATGGCGTCATC 60.464 55.000 0.00 0.00 0.00 2.92
33 34 0.464373 CTTAGGGTGCATGGCGTCAT 60.464 55.000 0.00 0.00 0.00 3.06
34 35 1.078497 CTTAGGGTGCATGGCGTCA 60.078 57.895 0.00 0.00 0.00 4.35
35 36 0.811616 CTCTTAGGGTGCATGGCGTC 60.812 60.000 0.00 0.00 0.00 5.19
36 37 1.221840 CTCTTAGGGTGCATGGCGT 59.778 57.895 0.00 0.00 0.00 5.68
37 38 2.182842 GCTCTTAGGGTGCATGGCG 61.183 63.158 0.00 0.00 34.88 5.69
38 39 1.077501 TGCTCTTAGGGTGCATGGC 60.078 57.895 0.00 0.00 39.16 4.40
42 43 0.901827 TTCGATGCTCTTAGGGTGCA 59.098 50.000 0.00 0.00 46.32 4.57
43 44 1.137086 TCTTCGATGCTCTTAGGGTGC 59.863 52.381 0.00 0.00 35.27 5.01
44 45 3.181471 ACATCTTCGATGCTCTTAGGGTG 60.181 47.826 3.88 0.00 0.00 4.61
45 46 3.034635 ACATCTTCGATGCTCTTAGGGT 58.965 45.455 3.88 0.00 0.00 4.34
46 47 3.742433 ACATCTTCGATGCTCTTAGGG 57.258 47.619 3.88 0.00 0.00 3.53
47 48 5.218885 CACTACATCTTCGATGCTCTTAGG 58.781 45.833 3.88 0.00 0.00 2.69
48 49 4.679197 GCACTACATCTTCGATGCTCTTAG 59.321 45.833 3.88 1.88 0.00 2.18
49 50 4.499865 GGCACTACATCTTCGATGCTCTTA 60.500 45.833 3.88 0.00 33.57 2.10
50 51 3.452474 GCACTACATCTTCGATGCTCTT 58.548 45.455 3.88 0.00 0.00 2.85
51 52 2.223923 GGCACTACATCTTCGATGCTCT 60.224 50.000 3.88 0.00 33.57 4.09
52 53 2.131183 GGCACTACATCTTCGATGCTC 58.869 52.381 3.88 0.00 33.57 4.26
53 54 1.482182 TGGCACTACATCTTCGATGCT 59.518 47.619 3.88 0.00 33.57 3.79
54 55 1.863454 CTGGCACTACATCTTCGATGC 59.137 52.381 3.88 0.00 0.00 3.91
55 56 3.119291 GTCTGGCACTACATCTTCGATG 58.881 50.000 2.49 2.49 0.00 3.84
56 57 2.101582 GGTCTGGCACTACATCTTCGAT 59.898 50.000 0.00 0.00 0.00 3.59
57 58 1.476891 GGTCTGGCACTACATCTTCGA 59.523 52.381 0.00 0.00 0.00 3.71
58 59 1.478510 AGGTCTGGCACTACATCTTCG 59.521 52.381 0.00 0.00 0.00 3.79
59 60 2.763448 AGAGGTCTGGCACTACATCTTC 59.237 50.000 6.59 0.00 33.76 2.87
60 61 2.763448 GAGAGGTCTGGCACTACATCTT 59.237 50.000 12.13 0.00 36.54 2.40
61 62 2.024464 AGAGAGGTCTGGCACTACATCT 60.024 50.000 11.04 11.04 38.36 2.90
62 63 2.383855 AGAGAGGTCTGGCACTACATC 58.616 52.381 2.55 2.55 0.00 3.06
63 64 2.541233 AGAGAGGTCTGGCACTACAT 57.459 50.000 0.00 0.00 0.00 2.29
64 65 3.006112 CTAGAGAGGTCTGGCACTACA 57.994 52.381 0.00 0.00 33.84 2.74
71 72 2.215196 GTCTACGCTAGAGAGGTCTGG 58.785 57.143 0.00 0.00 35.04 3.86
72 73 2.610374 GTGTCTACGCTAGAGAGGTCTG 59.390 54.545 0.00 0.00 35.04 3.51
73 74 2.236644 TGTGTCTACGCTAGAGAGGTCT 59.763 50.000 0.00 0.00 35.04 3.85
74 75 2.630158 TGTGTCTACGCTAGAGAGGTC 58.370 52.381 0.00 0.00 35.04 3.85
75 76 2.783609 TGTGTCTACGCTAGAGAGGT 57.216 50.000 0.00 0.00 35.04 3.85
76 77 3.243234 CCAATGTGTCTACGCTAGAGAGG 60.243 52.174 0.00 0.00 35.04 3.69
77 78 3.628032 TCCAATGTGTCTACGCTAGAGAG 59.372 47.826 0.00 0.00 35.04 3.20
78 79 3.617284 TCCAATGTGTCTACGCTAGAGA 58.383 45.455 0.00 0.00 35.04 3.10
79 80 4.576216 ATCCAATGTGTCTACGCTAGAG 57.424 45.455 0.00 0.00 35.04 2.43
80 81 5.009710 CCTTATCCAATGTGTCTACGCTAGA 59.990 44.000 0.00 0.00 0.00 2.43
81 82 5.009710 TCCTTATCCAATGTGTCTACGCTAG 59.990 44.000 0.00 0.00 0.00 3.42
82 83 4.891168 TCCTTATCCAATGTGTCTACGCTA 59.109 41.667 0.00 0.00 0.00 4.26
83 84 3.704566 TCCTTATCCAATGTGTCTACGCT 59.295 43.478 0.00 0.00 0.00 5.07
84 85 4.054780 TCCTTATCCAATGTGTCTACGC 57.945 45.455 0.00 0.00 0.00 4.42
85 86 7.378966 ACATATCCTTATCCAATGTGTCTACG 58.621 38.462 0.00 0.00 29.93 3.51
86 87 9.209175 GAACATATCCTTATCCAATGTGTCTAC 57.791 37.037 0.00 0.00 31.44 2.59
87 88 8.375506 GGAACATATCCTTATCCAATGTGTCTA 58.624 37.037 0.00 0.00 45.56 2.59
88 89 7.227156 GGAACATATCCTTATCCAATGTGTCT 58.773 38.462 0.00 0.00 45.56 3.41
89 90 6.147821 CGGAACATATCCTTATCCAATGTGTC 59.852 42.308 0.00 0.00 46.98 3.67
90 91 5.997746 CGGAACATATCCTTATCCAATGTGT 59.002 40.000 0.00 0.00 46.98 3.72
91 92 5.106555 GCGGAACATATCCTTATCCAATGTG 60.107 44.000 0.00 0.00 46.98 3.21
92 93 5.003804 GCGGAACATATCCTTATCCAATGT 58.996 41.667 0.00 0.00 46.98 2.71
93 94 5.003160 TGCGGAACATATCCTTATCCAATG 58.997 41.667 0.00 0.00 46.98 2.82
94 95 5.241403 TGCGGAACATATCCTTATCCAAT 57.759 39.130 0.00 0.00 46.98 3.16
95 96 4.698201 TGCGGAACATATCCTTATCCAA 57.302 40.909 0.00 0.00 46.98 3.53
96 97 4.908601 ATGCGGAACATATCCTTATCCA 57.091 40.909 0.00 0.00 46.98 3.41
97 98 5.003804 ACAATGCGGAACATATCCTTATCC 58.996 41.667 0.00 0.00 46.98 2.59
98 99 5.122396 GGACAATGCGGAACATATCCTTATC 59.878 44.000 0.00 0.00 46.98 1.75
99 100 5.003804 GGACAATGCGGAACATATCCTTAT 58.996 41.667 0.00 0.00 46.98 1.73
100 101 4.102524 AGGACAATGCGGAACATATCCTTA 59.897 41.667 5.85 0.00 45.76 2.69
101 102 3.117888 AGGACAATGCGGAACATATCCTT 60.118 43.478 5.85 0.00 45.76 3.36
102 103 2.439507 AGGACAATGCGGAACATATCCT 59.560 45.455 5.85 5.85 46.98 3.24
103 104 2.808543 GAGGACAATGCGGAACATATCC 59.191 50.000 0.00 0.00 45.57 2.59
104 105 2.808543 GGAGGACAATGCGGAACATATC 59.191 50.000 0.00 0.00 38.34 1.63
105 106 2.439507 AGGAGGACAATGCGGAACATAT 59.560 45.455 0.00 0.00 38.34 1.78
106 107 1.837439 AGGAGGACAATGCGGAACATA 59.163 47.619 0.00 0.00 38.34 2.29
107 108 0.620556 AGGAGGACAATGCGGAACAT 59.379 50.000 0.00 0.00 42.30 2.71
108 109 0.036388 GAGGAGGACAATGCGGAACA 60.036 55.000 0.00 0.00 0.00 3.18
109 110 0.250513 AGAGGAGGACAATGCGGAAC 59.749 55.000 0.00 0.00 0.00 3.62
110 111 0.984230 AAGAGGAGGACAATGCGGAA 59.016 50.000 0.00 0.00 0.00 4.30
111 112 0.250234 CAAGAGGAGGACAATGCGGA 59.750 55.000 0.00 0.00 0.00 5.54
112 113 0.745845 CCAAGAGGAGGACAATGCGG 60.746 60.000 0.00 0.00 36.89 5.69
113 114 0.250234 TCCAAGAGGAGGACAATGCG 59.750 55.000 0.00 0.00 39.61 4.73
125 126 0.737715 GCTACACGTGCCTCCAAGAG 60.738 60.000 17.22 1.52 0.00 2.85
126 127 1.292223 GCTACACGTGCCTCCAAGA 59.708 57.895 17.22 0.00 0.00 3.02
127 128 1.005037 TGCTACACGTGCCTCCAAG 60.005 57.895 17.22 4.95 0.00 3.61
128 129 1.005037 CTGCTACACGTGCCTCCAA 60.005 57.895 17.22 0.00 0.00 3.53
129 130 2.656646 CTGCTACACGTGCCTCCA 59.343 61.111 17.22 7.03 0.00 3.86
130 131 2.125512 CCTGCTACACGTGCCTCC 60.126 66.667 17.22 2.15 0.00 4.30
131 132 2.815647 GCCTGCTACACGTGCCTC 60.816 66.667 17.22 4.97 0.00 4.70
132 133 4.742201 CGCCTGCTACACGTGCCT 62.742 66.667 17.22 0.00 0.00 4.75
134 135 4.735132 TCCGCCTGCTACACGTGC 62.735 66.667 17.22 1.66 0.00 5.34
135 136 2.507102 CTCCGCCTGCTACACGTG 60.507 66.667 15.48 15.48 0.00 4.49
136 137 3.760035 CCTCCGCCTGCTACACGT 61.760 66.667 0.00 0.00 0.00 4.49
137 138 2.890847 CTTCCTCCGCCTGCTACACG 62.891 65.000 0.00 0.00 0.00 4.49
138 139 1.153549 CTTCCTCCGCCTGCTACAC 60.154 63.158 0.00 0.00 0.00 2.90
139 140 1.304962 TCTTCCTCCGCCTGCTACA 60.305 57.895 0.00 0.00 0.00 2.74
140 141 1.324005 ACTCTTCCTCCGCCTGCTAC 61.324 60.000 0.00 0.00 0.00 3.58
141 142 1.000486 ACTCTTCCTCCGCCTGCTA 60.000 57.895 0.00 0.00 0.00 3.49
142 143 2.284258 ACTCTTCCTCCGCCTGCT 60.284 61.111 0.00 0.00 0.00 4.24
143 144 2.185608 GACTCTTCCTCCGCCTGC 59.814 66.667 0.00 0.00 0.00 4.85
144 145 2.896443 GGACTCTTCCTCCGCCTG 59.104 66.667 0.00 0.00 39.13 4.85
152 153 2.270527 GGCCTGCAGGACTCTTCC 59.729 66.667 37.21 22.18 41.12 3.46
153 154 2.125350 CGGCCTGCAGGACTCTTC 60.125 66.667 37.21 16.97 42.58 2.87
154 155 2.925170 ACGGCCTGCAGGACTCTT 60.925 61.111 37.21 17.77 42.58 2.85
155 156 3.699894 CACGGCCTGCAGGACTCT 61.700 66.667 37.21 18.66 42.58 3.24
171 172 2.067365 TCGGATAGAAGTGCTAGGCA 57.933 50.000 0.00 0.00 35.60 4.75
181 182 2.885266 CGGATCTGGACTTCGGATAGAA 59.115 50.000 0.00 0.00 41.33 2.10
182 183 2.105993 TCGGATCTGGACTTCGGATAGA 59.894 50.000 0.62 0.00 41.33 1.98
183 184 2.505405 TCGGATCTGGACTTCGGATAG 58.495 52.381 0.62 0.00 41.33 2.08
184 185 2.651382 TCGGATCTGGACTTCGGATA 57.349 50.000 0.62 0.00 41.33 2.59
185 186 1.615883 CATCGGATCTGGACTTCGGAT 59.384 52.381 0.62 0.00 43.80 4.18
186 187 1.032794 CATCGGATCTGGACTTCGGA 58.967 55.000 0.62 0.00 34.85 4.55
187 188 0.598680 GCATCGGATCTGGACTTCGG 60.599 60.000 0.62 0.00 0.00 4.30
188 189 0.387202 AGCATCGGATCTGGACTTCG 59.613 55.000 0.62 0.00 0.00 3.79
189 190 1.410517 TCAGCATCGGATCTGGACTTC 59.589 52.381 0.62 0.00 0.00 3.01
190 191 1.489481 TCAGCATCGGATCTGGACTT 58.511 50.000 0.62 0.00 0.00 3.01
191 192 1.137872 GTTCAGCATCGGATCTGGACT 59.862 52.381 15.70 0.00 36.22 3.85
192 193 1.137872 AGTTCAGCATCGGATCTGGAC 59.862 52.381 15.40 15.40 38.74 4.02
193 194 1.489481 AGTTCAGCATCGGATCTGGA 58.511 50.000 0.62 6.15 0.00 3.86
194 195 3.006217 TGATAGTTCAGCATCGGATCTGG 59.994 47.826 0.62 0.00 0.00 3.86
195 196 4.248691 TGATAGTTCAGCATCGGATCTG 57.751 45.455 0.00 0.00 0.00 2.90
196 197 4.502259 GGTTGATAGTTCAGCATCGGATCT 60.502 45.833 0.00 0.00 34.98 2.75
197 198 3.743396 GGTTGATAGTTCAGCATCGGATC 59.257 47.826 0.00 0.00 34.98 3.36
198 199 3.134623 TGGTTGATAGTTCAGCATCGGAT 59.865 43.478 0.00 0.00 34.98 4.18
199 200 2.499693 TGGTTGATAGTTCAGCATCGGA 59.500 45.455 0.00 0.00 34.98 4.55
200 201 2.609459 GTGGTTGATAGTTCAGCATCGG 59.391 50.000 0.00 0.00 34.98 4.18
201 202 3.062639 GTGTGGTTGATAGTTCAGCATCG 59.937 47.826 0.00 0.00 34.98 3.84
202 203 3.062639 CGTGTGGTTGATAGTTCAGCATC 59.937 47.826 0.00 0.00 34.98 3.91
203 204 3.002791 CGTGTGGTTGATAGTTCAGCAT 58.997 45.455 0.00 0.00 34.98 3.79
204 205 2.036604 TCGTGTGGTTGATAGTTCAGCA 59.963 45.455 0.00 0.00 34.98 4.41
205 206 2.683968 TCGTGTGGTTGATAGTTCAGC 58.316 47.619 0.00 0.00 32.27 4.26
206 207 4.556233 TCTTCGTGTGGTTGATAGTTCAG 58.444 43.478 0.00 0.00 32.27 3.02
207 208 4.594123 TCTTCGTGTGGTTGATAGTTCA 57.406 40.909 0.00 0.00 0.00 3.18
208 209 6.481954 AAATCTTCGTGTGGTTGATAGTTC 57.518 37.500 0.00 0.00 0.00 3.01
209 210 6.668323 CAAAATCTTCGTGTGGTTGATAGTT 58.332 36.000 0.00 0.00 0.00 2.24
210 211 5.334879 GCAAAATCTTCGTGTGGTTGATAGT 60.335 40.000 0.00 0.00 0.00 2.12
211 212 5.088739 GCAAAATCTTCGTGTGGTTGATAG 58.911 41.667 0.00 0.00 0.00 2.08
212 213 4.517075 TGCAAAATCTTCGTGTGGTTGATA 59.483 37.500 0.00 0.00 0.00 2.15
213 214 3.317711 TGCAAAATCTTCGTGTGGTTGAT 59.682 39.130 0.00 0.00 0.00 2.57
214 215 2.685388 TGCAAAATCTTCGTGTGGTTGA 59.315 40.909 0.00 0.00 0.00 3.18
215 216 3.077229 TGCAAAATCTTCGTGTGGTTG 57.923 42.857 0.00 0.00 0.00 3.77
216 217 4.320608 AATGCAAAATCTTCGTGTGGTT 57.679 36.364 0.00 0.00 0.00 3.67
217 218 4.050553 CAAATGCAAAATCTTCGTGTGGT 58.949 39.130 0.00 0.00 0.00 4.16
218 219 4.297510 TCAAATGCAAAATCTTCGTGTGG 58.702 39.130 0.00 0.00 0.00 4.17
219 220 4.143473 GCTCAAATGCAAAATCTTCGTGTG 60.143 41.667 0.00 0.00 0.00 3.82
220 221 3.983344 GCTCAAATGCAAAATCTTCGTGT 59.017 39.130 0.00 0.00 0.00 4.49
221 222 3.982701 TGCTCAAATGCAAAATCTTCGTG 59.017 39.130 0.00 0.00 40.29 4.35
222 223 4.241590 TGCTCAAATGCAAAATCTTCGT 57.758 36.364 0.00 0.00 40.29 3.85
232 233 1.250328 CTGGGACTTGCTCAAATGCA 58.750 50.000 0.00 0.00 41.65 3.96
233 234 0.108945 GCTGGGACTTGCTCAAATGC 60.109 55.000 0.00 0.00 0.00 3.56
234 235 1.542492 AGCTGGGACTTGCTCAAATG 58.458 50.000 0.00 0.00 34.34 2.32
240 241 1.130054 TGGAAGAGCTGGGACTTGCT 61.130 55.000 0.00 0.00 40.79 3.91
241 242 0.250901 TTGGAAGAGCTGGGACTTGC 60.251 55.000 0.00 0.00 35.57 4.01
242 243 2.276732 TTTGGAAGAGCTGGGACTTG 57.723 50.000 0.00 0.00 0.00 3.16
243 244 2.800250 CATTTGGAAGAGCTGGGACTT 58.200 47.619 0.00 0.00 0.00 3.01
244 245 1.615384 GCATTTGGAAGAGCTGGGACT 60.615 52.381 0.00 0.00 0.00 3.85
245 246 0.813821 GCATTTGGAAGAGCTGGGAC 59.186 55.000 0.00 0.00 0.00 4.46
246 247 0.405198 TGCATTTGGAAGAGCTGGGA 59.595 50.000 0.00 0.00 0.00 4.37
247 248 1.203994 CTTGCATTTGGAAGAGCTGGG 59.796 52.381 5.98 0.00 44.86 4.45
248 249 1.403780 GCTTGCATTTGGAAGAGCTGG 60.404 52.381 14.99 0.00 44.86 4.85
249 250 1.271379 TGCTTGCATTTGGAAGAGCTG 59.729 47.619 14.99 0.00 44.86 4.24
250 251 1.271656 GTGCTTGCATTTGGAAGAGCT 59.728 47.619 14.99 0.00 44.86 4.09
251 252 1.670967 GGTGCTTGCATTTGGAAGAGC 60.671 52.381 14.99 2.77 44.86 4.09
252 253 1.401931 CGGTGCTTGCATTTGGAAGAG 60.402 52.381 14.99 0.67 44.86 2.85
253 254 0.597568 CGGTGCTTGCATTTGGAAGA 59.402 50.000 14.99 0.00 44.86 2.87
254 255 0.597568 TCGGTGCTTGCATTTGGAAG 59.402 50.000 7.38 7.38 44.86 3.46
255 256 1.035923 TTCGGTGCTTGCATTTGGAA 58.964 45.000 0.00 0.00 0.00 3.53
256 257 0.313672 GTTCGGTGCTTGCATTTGGA 59.686 50.000 0.00 0.00 0.00 3.53
257 258 1.003262 CGTTCGGTGCTTGCATTTGG 61.003 55.000 0.00 0.00 0.00 3.28
258 259 1.003262 CCGTTCGGTGCTTGCATTTG 61.003 55.000 2.82 0.00 0.00 2.32
259 260 1.169661 TCCGTTCGGTGCTTGCATTT 61.170 50.000 11.04 0.00 0.00 2.32
260 261 1.577328 CTCCGTTCGGTGCTTGCATT 61.577 55.000 11.04 0.00 0.00 3.56
261 262 2.031919 TCCGTTCGGTGCTTGCAT 59.968 55.556 11.04 0.00 0.00 3.96
262 263 2.664851 CTCCGTTCGGTGCTTGCA 60.665 61.111 11.04 0.00 0.00 4.08
263 264 4.090057 GCTCCGTTCGGTGCTTGC 62.090 66.667 24.45 12.86 40.44 4.01
264 265 3.423154 GGCTCCGTTCGGTGCTTG 61.423 66.667 28.25 10.64 42.44 4.01
265 266 4.699522 GGGCTCCGTTCGGTGCTT 62.700 66.667 28.25 0.00 42.44 3.91
268 269 4.796231 CGAGGGCTCCGTTCGGTG 62.796 72.222 11.04 9.77 0.00 4.94
281 282 2.434658 TATGCATGGGTAGCGCGAGG 62.435 60.000 12.10 0.00 33.85 4.63
282 283 1.006220 TATGCATGGGTAGCGCGAG 60.006 57.895 12.10 0.00 33.85 5.03
283 284 1.006220 CTATGCATGGGTAGCGCGA 60.006 57.895 12.10 0.00 33.85 5.87
284 285 2.671177 GCTATGCATGGGTAGCGCG 61.671 63.158 10.16 0.00 34.60 6.86
285 286 2.328099 GGCTATGCATGGGTAGCGC 61.328 63.158 10.16 0.00 43.24 5.92
286 287 0.952497 CAGGCTATGCATGGGTAGCG 60.952 60.000 10.16 0.00 43.24 4.26
287 288 0.397941 TCAGGCTATGCATGGGTAGC 59.602 55.000 10.16 10.18 40.91 3.58
288 289 2.105477 ACTTCAGGCTATGCATGGGTAG 59.895 50.000 10.16 0.00 40.91 3.18
289 290 2.126882 ACTTCAGGCTATGCATGGGTA 58.873 47.619 10.16 0.00 40.91 3.69
290 291 0.921896 ACTTCAGGCTATGCATGGGT 59.078 50.000 10.16 0.00 40.91 4.51
291 292 2.551721 CCTACTTCAGGCTATGCATGGG 60.552 54.545 10.16 3.17 40.91 4.00
292 293 2.775890 CCTACTTCAGGCTATGCATGG 58.224 52.381 10.16 7.77 40.91 3.66
303 304 4.872691 CACTGCTAAATCCACCTACTTCAG 59.127 45.833 0.00 0.00 0.00 3.02
304 305 4.286032 ACACTGCTAAATCCACCTACTTCA 59.714 41.667 0.00 0.00 0.00 3.02
305 306 4.833390 ACACTGCTAAATCCACCTACTTC 58.167 43.478 0.00 0.00 0.00 3.01
306 307 4.910458 ACACTGCTAAATCCACCTACTT 57.090 40.909 0.00 0.00 0.00 2.24
307 308 5.425539 ACATACACTGCTAAATCCACCTACT 59.574 40.000 0.00 0.00 0.00 2.57
308 309 5.523916 CACATACACTGCTAAATCCACCTAC 59.476 44.000 0.00 0.00 0.00 3.18
309 310 5.670485 CACATACACTGCTAAATCCACCTA 58.330 41.667 0.00 0.00 0.00 3.08
310 311 4.517285 CACATACACTGCTAAATCCACCT 58.483 43.478 0.00 0.00 0.00 4.00
311 312 3.065371 GCACATACACTGCTAAATCCACC 59.935 47.826 0.00 0.00 0.00 4.61
312 313 3.065371 GGCACATACACTGCTAAATCCAC 59.935 47.826 0.00 0.00 34.84 4.02
313 314 3.278574 GGCACATACACTGCTAAATCCA 58.721 45.455 0.00 0.00 34.84 3.41
314 315 2.618709 GGGCACATACACTGCTAAATCC 59.381 50.000 0.00 0.00 34.84 3.01
315 316 2.287915 CGGGCACATACACTGCTAAATC 59.712 50.000 0.00 0.00 34.84 2.17
316 317 2.093181 TCGGGCACATACACTGCTAAAT 60.093 45.455 0.00 0.00 34.84 1.40
317 318 1.276705 TCGGGCACATACACTGCTAAA 59.723 47.619 0.00 0.00 34.84 1.85
318 319 0.899019 TCGGGCACATACACTGCTAA 59.101 50.000 0.00 0.00 34.84 3.09
319 320 0.899019 TTCGGGCACATACACTGCTA 59.101 50.000 0.00 0.00 34.84 3.49
320 321 0.391661 CTTCGGGCACATACACTGCT 60.392 55.000 0.00 0.00 34.84 4.24
321 322 1.369091 CCTTCGGGCACATACACTGC 61.369 60.000 0.00 0.00 0.00 4.40
322 323 0.744414 CCCTTCGGGCACATACACTG 60.744 60.000 0.00 0.00 35.35 3.66
323 324 1.602237 CCCTTCGGGCACATACACT 59.398 57.895 0.00 0.00 35.35 3.55
324 325 4.218722 CCCTTCGGGCACATACAC 57.781 61.111 0.00 0.00 35.35 2.90
344 345 4.856607 GACTCCTTCTCGCCGGCG 62.857 72.222 42.13 42.13 41.35 6.46
345 346 3.082579 ATGACTCCTTCTCGCCGGC 62.083 63.158 19.07 19.07 0.00 6.13
346 347 1.227089 CATGACTCCTTCTCGCCGG 60.227 63.158 0.00 0.00 0.00 6.13
347 348 0.108615 AACATGACTCCTTCTCGCCG 60.109 55.000 0.00 0.00 0.00 6.46
348 349 1.646189 GAACATGACTCCTTCTCGCC 58.354 55.000 0.00 0.00 0.00 5.54
349 350 1.272781 CGAACATGACTCCTTCTCGC 58.727 55.000 0.00 0.00 0.00 5.03
350 351 1.202582 ACCGAACATGACTCCTTCTCG 59.797 52.381 0.00 0.00 0.00 4.04
351 352 2.611518 CACCGAACATGACTCCTTCTC 58.388 52.381 0.00 0.00 0.00 2.87
352 353 1.276421 CCACCGAACATGACTCCTTCT 59.724 52.381 0.00 0.00 0.00 2.85
353 354 1.275291 TCCACCGAACATGACTCCTTC 59.725 52.381 0.00 0.00 0.00 3.46
354 355 1.348064 TCCACCGAACATGACTCCTT 58.652 50.000 0.00 0.00 0.00 3.36
355 356 1.573108 ATCCACCGAACATGACTCCT 58.427 50.000 0.00 0.00 0.00 3.69
356 357 3.654414 GATATCCACCGAACATGACTCC 58.346 50.000 0.00 0.00 0.00 3.85
357 358 3.004419 TCGATATCCACCGAACATGACTC 59.996 47.826 0.00 0.00 0.00 3.36
358 359 2.956333 TCGATATCCACCGAACATGACT 59.044 45.455 0.00 0.00 0.00 3.41
359 360 3.364889 TCGATATCCACCGAACATGAC 57.635 47.619 0.00 0.00 0.00 3.06
360 361 3.572255 TGATCGATATCCACCGAACATGA 59.428 43.478 0.00 0.00 38.36 3.07
361 362 3.913089 TGATCGATATCCACCGAACATG 58.087 45.455 0.00 0.00 38.36 3.21
362 363 3.826729 TCTGATCGATATCCACCGAACAT 59.173 43.478 0.00 0.00 37.07 2.71
370 371 4.518970 TCATGAACGTCTGATCGATATCCA 59.481 41.667 0.00 0.00 34.70 3.41
382 383 2.923655 CGTACTTGCATCATGAACGTCT 59.076 45.455 0.00 0.00 0.00 4.18
422 423 4.383173 TGTGCCAGATAGATACAATGCAG 58.617 43.478 0.00 0.00 0.00 4.41
424 425 5.528690 TCTTTGTGCCAGATAGATACAATGC 59.471 40.000 0.00 0.00 32.07 3.56
636 663 2.787994 AGGAAATTGCTGTGTCTGGAG 58.212 47.619 0.00 0.00 0.00 3.86
677 705 1.063972 GTGAAAGTGCGTGCAAGCA 59.936 52.632 23.72 23.72 45.96 3.91
682 710 0.166814 GAGATGGTGAAAGTGCGTGC 59.833 55.000 0.00 0.00 0.00 5.34
683 711 0.798776 GGAGATGGTGAAAGTGCGTG 59.201 55.000 0.00 0.00 0.00 5.34
686 719 1.003580 TGGAGGAGATGGTGAAAGTGC 59.996 52.381 0.00 0.00 0.00 4.40
734 769 1.043116 TCTTGCGGACCATCGATCCT 61.043 55.000 0.00 0.00 33.70 3.24
934 969 0.741221 GCCTCGAGCGAATTGGTCTT 60.741 55.000 6.99 0.00 43.02 3.01
988 1023 1.074072 TGCCCATTACTTGCACCGT 59.926 52.632 0.00 0.00 0.00 4.83
1047 1082 1.269166 CGTGGACGAAGAGGAAATCG 58.731 55.000 0.00 0.00 44.33 3.34
1055 1090 1.750341 TTTCTGGGCGTGGACGAAGA 61.750 55.000 2.73 0.00 43.02 2.87
1059 1094 3.411351 CGTTTCTGGGCGTGGACG 61.411 66.667 0.00 0.00 43.27 4.79
1067 1102 2.749076 TGAAGATTCATGCGTTTCTGGG 59.251 45.455 0.00 0.00 31.01 4.45
1144 1190 3.390967 TCCATCCATCTCTTTCCGCAATA 59.609 43.478 0.00 0.00 0.00 1.90
1172 1218 2.954318 GACTTAATGCATGCACCCATCT 59.046 45.455 25.37 2.19 0.00 2.90
1262 1310 1.870055 AAATCGCTTGGTGGCTGCTG 61.870 55.000 0.00 0.00 0.00 4.41
1307 1356 6.256819 TCGGAAATCTCTATCTGTATCCCAT 58.743 40.000 0.00 0.00 0.00 4.00
1316 1365 7.130681 ACAATCCTTTCGGAAATCTCTATCT 57.869 36.000 3.24 0.00 44.02 1.98
1356 1405 2.093711 TGGCCGAAAAGAATCGATCTCA 60.094 45.455 0.00 0.00 45.48 3.27
1440 1497 6.928979 TCCTTTTATCGACAAAAGAACACA 57.071 33.333 26.38 5.67 44.68 3.72
1549 1808 6.946229 ATGTGTACGAACAACATCTCTAAC 57.054 37.500 0.00 0.00 37.36 2.34
1589 1848 7.516209 TCCTTAATAGCTATGTATGTTTCCCCT 59.484 37.037 7.09 0.00 0.00 4.79
1590 1849 7.606839 GTCCTTAATAGCTATGTATGTTTCCCC 59.393 40.741 7.09 0.00 0.00 4.81
1617 1876 7.966246 TTCGTGCTTAAATTCCTTTGTAGTA 57.034 32.000 0.00 0.00 0.00 1.82
1751 2011 1.005512 AACGCTGCCGATGTACACA 60.006 52.632 0.00 0.00 38.29 3.72
1752 2012 1.693083 GGAACGCTGCCGATGTACAC 61.693 60.000 0.00 0.00 38.29 2.90
1753 2013 1.447140 GGAACGCTGCCGATGTACA 60.447 57.895 0.00 0.00 38.29 2.90
1755 2015 1.017177 GTTGGAACGCTGCCGATGTA 61.017 55.000 0.00 0.00 38.29 2.29
1756 2016 2.031919 TTGGAACGCTGCCGATGT 59.968 55.556 0.00 0.00 38.29 3.06
1757 2017 2.034879 AGTTGGAACGCTGCCGATG 61.035 57.895 0.00 0.00 38.29 3.84
1758 2018 2.034879 CAGTTGGAACGCTGCCGAT 61.035 57.895 0.00 0.00 38.29 4.18
1759 2019 2.089887 TACAGTTGGAACGCTGCCGA 62.090 55.000 0.00 0.00 37.44 5.54
1762 2022 0.179189 GCATACAGTTGGAACGCTGC 60.179 55.000 0.00 0.00 37.44 5.25
1892 2182 1.014044 ACGAAGTACCTGCACGCATG 61.014 55.000 0.00 0.00 41.94 4.06
1895 2185 2.380410 CCACGAAGTACCTGCACGC 61.380 63.158 0.00 0.00 41.61 5.34
2042 2332 4.508128 GATGCCGAACTCCGCCGA 62.508 66.667 0.00 0.00 36.84 5.54
2182 2472 1.718757 GGATGGCGAACATGAGGTGC 61.719 60.000 0.00 0.00 40.72 5.01
2230 2520 2.122563 GCGGCTGAGCTAGTTACTAC 57.877 55.000 3.72 0.00 0.00 2.73
2247 2538 2.879070 GCACGATGGATCAGCAGCG 61.879 63.158 7.88 7.88 0.00 5.18
2262 2553 3.009140 CATCTCCGATGCGTGCAC 58.991 61.111 6.82 6.82 0.00 4.57
2280 2571 0.672711 ATCTGCATGCATCGATCGGG 60.673 55.000 22.97 6.92 0.00 5.14
2336 2629 3.806316 ATCAAACCAACGCGTCTAAAG 57.194 42.857 14.44 1.93 0.00 1.85
2337 2630 4.555348 AAATCAAACCAACGCGTCTAAA 57.445 36.364 14.44 0.00 0.00 1.85
2342 2635 2.602694 CCGTTAAATCAAACCAACGCGT 60.603 45.455 5.58 5.58 41.71 6.01
2361 2654 4.681643 ACACAACAATGCGCGCCG 62.682 61.111 30.77 19.50 0.00 6.46


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.