Multiple sequence alignment - TraesCS7B01G287400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G287400 chr7B 100.000 3905 0 0 1 3905 523163894 523167798 0.000000e+00 7212.0
1 TraesCS7B01G287400 chr7B 87.467 383 34 10 5 385 385097697 385098067 2.790000e-116 429.0
2 TraesCS7B01G287400 chr7B 86.607 224 22 6 5 227 385096981 385097197 1.400000e-59 241.0
3 TraesCS7B01G287400 chr7B 78.481 316 54 12 75 385 616291836 616291530 1.110000e-45 195.0
4 TraesCS7B01G287400 chr7D 90.994 1921 130 25 2010 3902 495311224 495313129 0.000000e+00 2549.0
5 TraesCS7B01G287400 chr7D 91.750 800 37 9 672 1451 495306733 495307523 0.000000e+00 1085.0
6 TraesCS7B01G287400 chr7D 93.784 370 21 2 1453 1822 495307691 495308058 4.410000e-154 555.0
7 TraesCS7B01G287400 chr7D 92.553 94 7 0 449 542 203516713 203516806 6.810000e-28 135.0
8 TraesCS7B01G287400 chr7D 86.598 97 5 5 585 674 495296999 495297094 2.480000e-17 100.0
9 TraesCS7B01G287400 chr7D 94.828 58 0 3 1958 2014 122681722 122681777 1.930000e-13 87.9
10 TraesCS7B01G287400 chr7A 91.925 1325 66 19 601 1897 561048886 561050197 0.000000e+00 1816.0
11 TraesCS7B01G287400 chr7A 91.429 1015 61 18 2010 3009 561050488 561051491 0.000000e+00 1369.0
12 TraesCS7B01G287400 chr7A 79.672 305 48 14 41 338 71072451 71072748 1.420000e-49 207.0
13 TraesCS7B01G287400 chr7A 93.333 60 1 3 1963 2019 579090078 579090019 6.950000e-13 86.1
14 TraesCS7B01G287400 chr7A 89.231 65 5 2 1969 2032 28891765 28891702 3.230000e-11 80.5
15 TraesCS7B01G287400 chr7A 89.231 65 5 2 1969 2032 28932793 28932730 3.230000e-11 80.5
16 TraesCS7B01G287400 chr5D 81.527 406 50 12 1 385 35285101 35285502 1.050000e-80 311.0
17 TraesCS7B01G287400 chr5D 80.737 353 49 14 37 385 9210099 9209762 1.390000e-64 257.0
18 TraesCS7B01G287400 chr2A 80.153 393 60 13 1 384 774535059 774534676 1.070000e-70 278.0
19 TraesCS7B01G287400 chr2A 89.231 65 5 2 1969 2033 638876248 638876310 3.230000e-11 80.5
20 TraesCS7B01G287400 chr3B 86.893 206 21 6 182 385 526937710 526937911 3.930000e-55 226.0
21 TraesCS7B01G287400 chr3B 79.179 341 57 12 1 334 703293256 703293589 1.410000e-54 224.0
22 TraesCS7B01G287400 chr3B 96.774 62 2 0 385 446 389083793 389083854 1.920000e-18 104.0
23 TraesCS7B01G287400 chr6B 82.743 226 32 6 91 314 696896184 696895964 1.110000e-45 195.0
24 TraesCS7B01G287400 chrUn 92.553 94 7 0 449 542 275329027 275328934 6.810000e-28 135.0
25 TraesCS7B01G287400 chrUn 92.553 94 7 0 449 542 454685084 454684991 6.810000e-28 135.0
26 TraesCS7B01G287400 chrUn 95.161 62 3 0 385 446 264059843 264059904 8.930000e-17 99.0
27 TraesCS7B01G287400 chrUn 95.161 62 3 0 385 446 266529776 266529837 8.930000e-17 99.0
28 TraesCS7B01G287400 chrUn 93.846 65 4 0 385 449 361509479 361509415 8.930000e-17 99.0
29 TraesCS7B01G287400 chrUn 95.161 62 3 0 385 446 452544398 452544459 8.930000e-17 99.0
30 TraesCS7B01G287400 chrUn 89.394 66 5 2 1969 2033 235338202 235338266 8.990000e-12 82.4
31 TraesCS7B01G287400 chrUn 89.394 66 5 2 1969 2033 333415716 333415652 8.990000e-12 82.4
32 TraesCS7B01G287400 chrUn 89.231 65 5 2 1969 2032 241299951 241299888 3.230000e-11 80.5
33 TraesCS7B01G287400 chrUn 89.231 65 5 2 1969 2032 317310185 317310122 3.230000e-11 80.5
34 TraesCS7B01G287400 chr4D 92.553 94 7 0 449 542 123301125 123301218 6.810000e-28 135.0
35 TraesCS7B01G287400 chr4D 92.553 94 7 0 449 542 123717743 123717836 6.810000e-28 135.0
36 TraesCS7B01G287400 chr3D 78.972 214 33 11 3680 3887 3291988 3291781 6.810000e-28 135.0
37 TraesCS7B01G287400 chr3D 92.553 94 7 0 449 542 501932570 501932477 6.810000e-28 135.0
38 TraesCS7B01G287400 chr3D 80.645 124 10 10 3672 3787 475577856 475577739 2.500000e-12 84.2
39 TraesCS7B01G287400 chr1D 92.553 94 7 0 449 542 141311901 141311808 6.810000e-28 135.0
40 TraesCS7B01G287400 chr1D 92.553 94 7 0 449 542 298814747 298814654 6.810000e-28 135.0
41 TraesCS7B01G287400 chr1B 92.553 94 7 0 449 542 638699428 638699335 6.810000e-28 135.0
42 TraesCS7B01G287400 chr1B 78.992 119 20 5 624 739 417020456 417020572 4.180000e-10 76.8
43 TraesCS7B01G287400 chr2D 82.677 127 14 4 3672 3790 449072633 449072759 5.340000e-19 106.0
44 TraesCS7B01G287400 chr5B 95.385 65 3 0 385 449 55515128 55515064 1.920000e-18 104.0
45 TraesCS7B01G287400 chr2B 95.385 65 3 0 385 449 391214270 391214206 1.920000e-18 104.0
46 TraesCS7B01G287400 chr2B 82.456 114 13 4 3684 3790 529254838 529254725 4.150000e-15 93.5
47 TraesCS7B01G287400 chr6D 95.161 62 3 0 385 446 277322270 277322331 8.930000e-17 99.0
48 TraesCS7B01G287400 chr6D 93.846 65 4 0 385 449 458957248 458957184 8.930000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G287400 chr7B 523163894 523167798 3904 False 7212.000000 7212 100.000 1 3905 1 chr7B.!!$F1 3904
1 TraesCS7B01G287400 chr7B 385096981 385098067 1086 False 335.000000 429 87.037 5 385 2 chr7B.!!$F2 380
2 TraesCS7B01G287400 chr7D 495306733 495313129 6396 False 1396.333333 2549 92.176 672 3902 3 chr7D.!!$F4 3230
3 TraesCS7B01G287400 chr7A 561048886 561051491 2605 False 1592.500000 1816 91.677 601 3009 2 chr7A.!!$F2 2408

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
411 1129 0.034089 GCACAGGGCTTCCATAAGGT 60.034 55.000 0.00 0.0 40.25 3.50 F
468 1186 0.100146 GCCGACGACTTACTACTGGG 59.900 60.000 0.00 0.0 0.00 4.45 F
636 1354 0.112801 AGCGAGTAGGATACCCCTCC 59.887 60.000 0.00 0.0 43.31 4.30 F
786 1512 0.763035 AACTCCCTTGCACCGTTACT 59.237 50.000 0.00 0.0 0.00 2.24 F
900 1629 1.003118 CGGATCCTGTCTTCCCAAACA 59.997 52.381 10.75 0.0 0.00 2.83 F
2620 6799 1.989864 TCAAAATGGACGACGACGATG 59.010 47.619 15.32 0.0 42.66 3.84 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1258 1998 0.038251 CACTGCTCGCTGAGGTACAA 60.038 55.000 2.72 0.00 0.00 2.41 R
2431 6610 0.960364 TTGCCCCATTTCTGCTCGTC 60.960 55.000 0.00 0.00 0.00 4.20 R
2433 6612 1.243342 TGTTGCCCCATTTCTGCTCG 61.243 55.000 0.00 0.00 0.00 5.03 R
2436 6615 1.275856 TCATTGTTGCCCCATTTCTGC 59.724 47.619 0.00 0.00 0.00 4.26 R
2692 6883 1.381928 TAGTCATGGGTCGAGTCGCC 61.382 60.000 7.92 12.32 0.00 5.54 R
3807 8014 0.179073 TTCTAGCTGCGGGAATCTGC 60.179 55.000 0.00 0.00 45.23 4.26 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
55 772 8.292448 AGTTTACTCATAAATGTTTGCTGACTG 58.708 33.333 0.00 0.00 32.91 3.51
109 826 9.444534 GTTCGCAAATTTTAAAAATTGTTCCAT 57.555 25.926 23.15 0.00 32.70 3.41
149 866 7.111247 AGTTTGTCCATTCAAGAAATGTTCA 57.889 32.000 0.00 0.00 42.80 3.18
161 878 7.642669 TCAAGAAATGTTCACAGATTCAAGAC 58.357 34.615 9.63 0.00 31.77 3.01
354 1072 9.931210 AAAAATATTCGTAATCTCACCGAAATC 57.069 29.630 0.00 0.00 42.98 2.17
355 1073 8.657074 AAATATTCGTAATCTCACCGAAATCA 57.343 30.769 0.00 0.00 42.98 2.57
357 1075 6.978343 ATTCGTAATCTCACCGAAATCAAA 57.022 33.333 0.00 0.00 42.98 2.69
377 1095 8.809159 ATCAAAAGTGATAGTGTATCTCGATG 57.191 34.615 0.00 0.00 42.94 3.84
378 1096 7.996385 TCAAAAGTGATAGTGTATCTCGATGA 58.004 34.615 0.00 0.00 36.17 2.92
385 1103 2.064762 GTGTATCTCGATGATGCAGCC 58.935 52.381 13.07 0.00 45.85 4.85
386 1104 1.001293 TGTATCTCGATGATGCAGCCC 59.999 52.381 0.00 0.00 41.66 5.19
387 1105 0.610174 TATCTCGATGATGCAGCCCC 59.390 55.000 0.00 0.00 36.65 5.80
388 1106 1.413256 ATCTCGATGATGCAGCCCCA 61.413 55.000 0.00 0.00 33.43 4.96
389 1107 1.072678 CTCGATGATGCAGCCCCAT 59.927 57.895 0.00 0.00 0.00 4.00
390 1108 0.954449 CTCGATGATGCAGCCCCATC 60.954 60.000 0.00 11.97 41.51 3.51
391 1109 1.072678 CGATGATGCAGCCCCATCT 59.927 57.895 17.13 2.29 41.65 2.90
392 1110 1.235281 CGATGATGCAGCCCCATCTG 61.235 60.000 17.13 10.07 41.65 2.90
398 1116 2.439701 CAGCCCCATCTGCACAGG 60.440 66.667 0.00 0.00 0.00 4.00
399 1117 3.736224 AGCCCCATCTGCACAGGG 61.736 66.667 6.41 6.41 42.94 4.45
401 1119 3.736224 CCCCATCTGCACAGGGCT 61.736 66.667 7.68 0.00 45.15 5.19
402 1120 2.357836 CCCATCTGCACAGGGCTT 59.642 61.111 0.00 0.00 45.15 4.35
403 1121 1.751927 CCCATCTGCACAGGGCTTC 60.752 63.158 0.00 0.00 45.15 3.86
404 1122 1.751927 CCATCTGCACAGGGCTTCC 60.752 63.158 0.00 0.00 45.15 3.46
405 1123 1.001764 CATCTGCACAGGGCTTCCA 60.002 57.895 0.00 0.00 45.15 3.53
406 1124 0.395311 CATCTGCACAGGGCTTCCAT 60.395 55.000 0.00 0.00 45.15 3.41
407 1125 1.134007 CATCTGCACAGGGCTTCCATA 60.134 52.381 0.00 0.00 45.15 2.74
408 1126 0.991146 TCTGCACAGGGCTTCCATAA 59.009 50.000 0.00 0.00 45.15 1.90
409 1127 1.065199 TCTGCACAGGGCTTCCATAAG 60.065 52.381 0.00 0.00 45.15 1.73
410 1128 0.034186 TGCACAGGGCTTCCATAAGG 60.034 55.000 0.00 0.00 45.15 2.69
411 1129 0.034089 GCACAGGGCTTCCATAAGGT 60.034 55.000 0.00 0.00 40.25 3.50
412 1130 1.616994 GCACAGGGCTTCCATAAGGTT 60.617 52.381 0.00 0.00 40.25 3.50
413 1131 2.369394 CACAGGGCTTCCATAAGGTTC 58.631 52.381 0.00 0.00 35.89 3.62
414 1132 2.025887 CACAGGGCTTCCATAAGGTTCT 60.026 50.000 0.00 0.00 35.89 3.01
415 1133 2.239907 ACAGGGCTTCCATAAGGTTCTC 59.760 50.000 0.00 0.00 35.89 2.87
416 1134 1.486726 AGGGCTTCCATAAGGTTCTCG 59.513 52.381 0.00 0.00 35.89 4.04
417 1135 1.475213 GGGCTTCCATAAGGTTCTCGG 60.475 57.143 0.00 0.00 35.89 4.63
418 1136 1.300481 GCTTCCATAAGGTTCTCGGC 58.700 55.000 0.00 0.00 35.89 5.54
419 1137 1.954927 CTTCCATAAGGTTCTCGGCC 58.045 55.000 0.00 0.00 35.89 6.13
420 1138 0.544697 TTCCATAAGGTTCTCGGCCC 59.455 55.000 0.00 0.00 35.89 5.80
421 1139 0.326238 TCCATAAGGTTCTCGGCCCT 60.326 55.000 0.00 0.00 35.89 5.19
422 1140 0.546598 CCATAAGGTTCTCGGCCCTT 59.453 55.000 0.00 0.00 43.41 3.95
423 1141 1.475213 CCATAAGGTTCTCGGCCCTTC 60.475 57.143 0.00 0.00 41.30 3.46
424 1142 1.486726 CATAAGGTTCTCGGCCCTTCT 59.513 52.381 0.00 0.00 41.30 2.85
425 1143 1.652947 TAAGGTTCTCGGCCCTTCTT 58.347 50.000 0.00 0.00 41.30 2.52
426 1144 0.325272 AAGGTTCTCGGCCCTTCTTC 59.675 55.000 0.00 0.00 36.29 2.87
427 1145 1.078356 GGTTCTCGGCCCTTCTTCC 60.078 63.158 0.00 0.00 0.00 3.46
428 1146 1.448013 GTTCTCGGCCCTTCTTCCG 60.448 63.158 0.00 0.00 46.52 4.30
429 1147 1.911766 TTCTCGGCCCTTCTTCCGT 60.912 57.895 0.00 0.00 45.44 4.69
430 1148 2.125512 CTCGGCCCTTCTTCCGTG 60.126 66.667 0.00 0.00 45.44 4.94
431 1149 4.388499 TCGGCCCTTCTTCCGTGC 62.388 66.667 0.00 0.00 45.44 5.34
432 1150 4.697756 CGGCCCTTCTTCCGTGCA 62.698 66.667 0.00 0.00 40.72 4.57
433 1151 2.044946 GGCCCTTCTTCCGTGCAT 60.045 61.111 0.00 0.00 0.00 3.96
434 1152 1.678970 GGCCCTTCTTCCGTGCATT 60.679 57.895 0.00 0.00 0.00 3.56
435 1153 0.393808 GGCCCTTCTTCCGTGCATTA 60.394 55.000 0.00 0.00 0.00 1.90
436 1154 1.459450 GCCCTTCTTCCGTGCATTAA 58.541 50.000 0.00 0.00 0.00 1.40
437 1155 1.132453 GCCCTTCTTCCGTGCATTAAC 59.868 52.381 0.00 0.00 0.00 2.01
438 1156 2.711542 CCCTTCTTCCGTGCATTAACT 58.288 47.619 0.00 0.00 0.00 2.24
439 1157 2.678336 CCCTTCTTCCGTGCATTAACTC 59.322 50.000 0.00 0.00 0.00 3.01
440 1158 3.334691 CCTTCTTCCGTGCATTAACTCA 58.665 45.455 0.00 0.00 0.00 3.41
441 1159 3.751175 CCTTCTTCCGTGCATTAACTCAA 59.249 43.478 0.00 0.00 0.00 3.02
442 1160 4.396166 CCTTCTTCCGTGCATTAACTCAAT 59.604 41.667 0.00 0.00 0.00 2.57
443 1161 4.944962 TCTTCCGTGCATTAACTCAATG 57.055 40.909 0.00 0.00 45.87 2.82
444 1162 3.689161 TCTTCCGTGCATTAACTCAATGG 59.311 43.478 0.00 0.00 43.70 3.16
445 1163 1.742831 TCCGTGCATTAACTCAATGGC 59.257 47.619 0.00 0.00 43.70 4.40
446 1164 1.745087 CCGTGCATTAACTCAATGGCT 59.255 47.619 0.00 0.00 43.70 4.75
447 1165 2.478370 CCGTGCATTAACTCAATGGCTG 60.478 50.000 0.00 0.00 43.70 4.85
448 1166 2.162208 CGTGCATTAACTCAATGGCTGT 59.838 45.455 0.00 0.00 43.70 4.40
449 1167 3.504863 GTGCATTAACTCAATGGCTGTG 58.495 45.455 0.00 0.00 43.70 3.66
450 1168 2.094597 TGCATTAACTCAATGGCTGTGC 60.095 45.455 0.00 0.00 43.70 4.57
460 1178 2.260434 GGCTGTGCCGACGACTTA 59.740 61.111 0.00 0.00 39.62 2.24
461 1179 2.092882 GGCTGTGCCGACGACTTAC 61.093 63.158 0.00 0.00 39.62 2.34
462 1180 1.080705 GCTGTGCCGACGACTTACT 60.081 57.895 0.00 0.00 0.00 2.24
463 1181 0.169672 GCTGTGCCGACGACTTACTA 59.830 55.000 0.00 0.00 0.00 1.82
464 1182 1.892468 CTGTGCCGACGACTTACTAC 58.108 55.000 0.00 0.00 0.00 2.73
465 1183 1.467734 CTGTGCCGACGACTTACTACT 59.532 52.381 0.00 0.00 0.00 2.57
466 1184 1.198408 TGTGCCGACGACTTACTACTG 59.802 52.381 0.00 0.00 0.00 2.74
467 1185 0.806868 TGCCGACGACTTACTACTGG 59.193 55.000 0.00 0.00 0.00 4.00
468 1186 0.100146 GCCGACGACTTACTACTGGG 59.900 60.000 0.00 0.00 0.00 4.45
469 1187 1.742761 CCGACGACTTACTACTGGGA 58.257 55.000 0.00 0.00 0.00 4.37
470 1188 2.086869 CCGACGACTTACTACTGGGAA 58.913 52.381 0.00 0.00 0.00 3.97
471 1189 2.686915 CCGACGACTTACTACTGGGAAT 59.313 50.000 0.00 0.00 0.00 3.01
472 1190 3.243002 CCGACGACTTACTACTGGGAATC 60.243 52.174 0.00 0.00 0.00 2.52
473 1191 3.545624 CGACGACTTACTACTGGGAATCG 60.546 52.174 0.00 0.00 0.00 3.34
474 1192 3.350833 ACGACTTACTACTGGGAATCGT 58.649 45.455 0.00 0.00 36.78 3.73
475 1193 3.128242 ACGACTTACTACTGGGAATCGTG 59.872 47.826 0.00 0.00 39.84 4.35
476 1194 3.488721 CGACTTACTACTGGGAATCGTGG 60.489 52.174 0.00 0.00 0.00 4.94
477 1195 2.764572 ACTTACTACTGGGAATCGTGGG 59.235 50.000 0.00 0.00 0.00 4.61
478 1196 2.537633 TACTACTGGGAATCGTGGGT 57.462 50.000 0.00 0.00 0.00 4.51
479 1197 0.902531 ACTACTGGGAATCGTGGGTG 59.097 55.000 0.00 0.00 0.00 4.61
480 1198 0.462047 CTACTGGGAATCGTGGGTGC 60.462 60.000 0.00 0.00 0.00 5.01
481 1199 0.907704 TACTGGGAATCGTGGGTGCT 60.908 55.000 0.00 0.00 0.00 4.40
482 1200 1.746615 CTGGGAATCGTGGGTGCTG 60.747 63.158 0.00 0.00 0.00 4.41
483 1201 2.351276 GGGAATCGTGGGTGCTGT 59.649 61.111 0.00 0.00 0.00 4.40
484 1202 1.195442 TGGGAATCGTGGGTGCTGTA 61.195 55.000 0.00 0.00 0.00 2.74
485 1203 0.180406 GGGAATCGTGGGTGCTGTAT 59.820 55.000 0.00 0.00 0.00 2.29
486 1204 1.408266 GGGAATCGTGGGTGCTGTATT 60.408 52.381 0.00 0.00 0.00 1.89
487 1205 2.365582 GGAATCGTGGGTGCTGTATTT 58.634 47.619 0.00 0.00 0.00 1.40
488 1206 2.354821 GGAATCGTGGGTGCTGTATTTC 59.645 50.000 0.00 0.00 0.00 2.17
489 1207 1.651987 ATCGTGGGTGCTGTATTTCG 58.348 50.000 0.00 0.00 0.00 3.46
490 1208 0.319083 TCGTGGGTGCTGTATTTCGT 59.681 50.000 0.00 0.00 0.00 3.85
491 1209 0.719465 CGTGGGTGCTGTATTTCGTC 59.281 55.000 0.00 0.00 0.00 4.20
492 1210 1.671850 CGTGGGTGCTGTATTTCGTCT 60.672 52.381 0.00 0.00 0.00 4.18
493 1211 2.000447 GTGGGTGCTGTATTTCGTCTC 59.000 52.381 0.00 0.00 0.00 3.36
494 1212 1.621317 TGGGTGCTGTATTTCGTCTCA 59.379 47.619 0.00 0.00 0.00 3.27
495 1213 2.236146 TGGGTGCTGTATTTCGTCTCAT 59.764 45.455 0.00 0.00 0.00 2.90
496 1214 3.449377 TGGGTGCTGTATTTCGTCTCATA 59.551 43.478 0.00 0.00 0.00 2.15
497 1215 4.051922 GGGTGCTGTATTTCGTCTCATAG 58.948 47.826 0.00 0.00 0.00 2.23
498 1216 4.202121 GGGTGCTGTATTTCGTCTCATAGA 60.202 45.833 0.00 0.00 0.00 1.98
499 1217 5.348986 GGTGCTGTATTTCGTCTCATAGAA 58.651 41.667 0.00 0.00 0.00 2.10
500 1218 5.810587 GGTGCTGTATTTCGTCTCATAGAAA 59.189 40.000 0.00 0.00 40.14 2.52
501 1219 6.480320 GGTGCTGTATTTCGTCTCATAGAAAT 59.520 38.462 8.23 8.23 45.59 2.17
502 1220 7.652105 GGTGCTGTATTTCGTCTCATAGAAATA 59.348 37.037 6.55 6.55 43.00 1.40
510 1228 6.569228 TCGTCTCATAGAAATACAAAAGCG 57.431 37.500 0.00 0.00 0.00 4.68
511 1229 6.097356 TCGTCTCATAGAAATACAAAAGCGT 58.903 36.000 0.00 0.00 0.00 5.07
512 1230 7.252708 TCGTCTCATAGAAATACAAAAGCGTA 58.747 34.615 0.00 0.00 0.00 4.42
513 1231 7.919091 TCGTCTCATAGAAATACAAAAGCGTAT 59.081 33.333 0.00 0.00 33.43 3.06
514 1232 8.208560 CGTCTCATAGAAATACAAAAGCGTATC 58.791 37.037 0.00 0.00 30.73 2.24
515 1233 9.031360 GTCTCATAGAAATACAAAAGCGTATCA 57.969 33.333 0.00 0.00 30.73 2.15
516 1234 9.031360 TCTCATAGAAATACAAAAGCGTATCAC 57.969 33.333 0.00 0.00 30.73 3.06
517 1235 8.138365 TCATAGAAATACAAAAGCGTATCACC 57.862 34.615 0.00 0.00 30.73 4.02
518 1236 5.813080 AGAAATACAAAAGCGTATCACCC 57.187 39.130 0.00 0.00 30.73 4.61
519 1237 5.250200 AGAAATACAAAAGCGTATCACCCA 58.750 37.500 0.00 0.00 30.73 4.51
520 1238 5.885912 AGAAATACAAAAGCGTATCACCCAT 59.114 36.000 0.00 0.00 30.73 4.00
521 1239 6.377146 AGAAATACAAAAGCGTATCACCCATT 59.623 34.615 0.00 0.00 30.73 3.16
522 1240 6.524101 AATACAAAAGCGTATCACCCATTT 57.476 33.333 0.00 0.00 30.73 2.32
523 1241 4.434713 ACAAAAGCGTATCACCCATTTC 57.565 40.909 0.00 0.00 0.00 2.17
524 1242 3.192633 ACAAAAGCGTATCACCCATTTCC 59.807 43.478 0.00 0.00 0.00 3.13
525 1243 3.366052 AAAGCGTATCACCCATTTCCT 57.634 42.857 0.00 0.00 0.00 3.36
526 1244 4.497291 AAAGCGTATCACCCATTTCCTA 57.503 40.909 0.00 0.00 0.00 2.94
527 1245 3.470645 AGCGTATCACCCATTTCCTAC 57.529 47.619 0.00 0.00 0.00 3.18
528 1246 2.769663 AGCGTATCACCCATTTCCTACA 59.230 45.455 0.00 0.00 0.00 2.74
529 1247 3.199071 AGCGTATCACCCATTTCCTACAA 59.801 43.478 0.00 0.00 0.00 2.41
530 1248 4.134563 GCGTATCACCCATTTCCTACAAT 58.865 43.478 0.00 0.00 0.00 2.71
531 1249 4.578928 GCGTATCACCCATTTCCTACAATT 59.421 41.667 0.00 0.00 0.00 2.32
532 1250 5.277828 GCGTATCACCCATTTCCTACAATTC 60.278 44.000 0.00 0.00 0.00 2.17
533 1251 6.055588 CGTATCACCCATTTCCTACAATTCT 58.944 40.000 0.00 0.00 0.00 2.40
534 1252 6.017934 CGTATCACCCATTTCCTACAATTCTG 60.018 42.308 0.00 0.00 0.00 3.02
535 1253 5.255397 TCACCCATTTCCTACAATTCTGT 57.745 39.130 0.00 0.00 39.75 3.41
536 1254 5.640147 TCACCCATTTCCTACAATTCTGTT 58.360 37.500 0.00 0.00 36.96 3.16
537 1255 6.074648 TCACCCATTTCCTACAATTCTGTTT 58.925 36.000 0.00 0.00 36.96 2.83
538 1256 6.015519 TCACCCATTTCCTACAATTCTGTTTG 60.016 38.462 0.00 0.00 36.96 2.93
539 1257 6.015519 CACCCATTTCCTACAATTCTGTTTGA 60.016 38.462 0.00 0.00 36.96 2.69
540 1258 6.553100 ACCCATTTCCTACAATTCTGTTTGAA 59.447 34.615 0.00 0.00 36.96 2.69
541 1259 6.868339 CCCATTTCCTACAATTCTGTTTGAAC 59.132 38.462 0.00 0.00 37.52 3.18
542 1260 7.432869 CCATTTCCTACAATTCTGTTTGAACA 58.567 34.615 0.00 0.00 37.52 3.18
543 1261 7.925483 CCATTTCCTACAATTCTGTTTGAACAA 59.075 33.333 0.00 0.00 38.66 2.83
544 1262 9.311916 CATTTCCTACAATTCTGTTTGAACAAA 57.688 29.630 0.00 0.00 38.66 2.83
549 1267 9.912634 CCTACAATTCTGTTTGAACAAATATGT 57.087 29.630 3.34 5.18 38.66 2.29
552 1270 9.985730 ACAATTCTGTTTGAACAAATATGTGAT 57.014 25.926 0.00 0.00 38.66 3.06
556 1274 9.628746 TTCTGTTTGAACAAATATGTGATCATG 57.371 29.630 6.67 0.00 40.46 3.07
557 1275 8.245491 TCTGTTTGAACAAATATGTGATCATGG 58.755 33.333 6.67 0.00 40.46 3.66
558 1276 7.894708 TGTTTGAACAAATATGTGATCATGGT 58.105 30.769 6.67 0.00 40.46 3.55
559 1277 8.028354 TGTTTGAACAAATATGTGATCATGGTC 58.972 33.333 6.67 0.00 40.46 4.02
560 1278 7.700022 TTGAACAAATATGTGATCATGGTCA 57.300 32.000 4.01 4.01 40.46 4.02
561 1279 7.885009 TGAACAAATATGTGATCATGGTCAT 57.115 32.000 12.77 0.00 40.46 3.06
562 1280 8.296211 TGAACAAATATGTGATCATGGTCATT 57.704 30.769 12.77 5.80 40.46 2.57
563 1281 8.192110 TGAACAAATATGTGATCATGGTCATTG 58.808 33.333 12.77 13.99 40.46 2.82
564 1282 7.885009 ACAAATATGTGATCATGGTCATTGA 57.115 32.000 20.71 7.47 38.69 2.57
565 1283 8.296211 ACAAATATGTGATCATGGTCATTGAA 57.704 30.769 20.71 6.25 38.69 2.69
566 1284 8.410912 ACAAATATGTGATCATGGTCATTGAAG 58.589 33.333 20.71 8.55 38.69 3.02
567 1285 8.626526 CAAATATGTGATCATGGTCATTGAAGA 58.373 33.333 12.77 0.00 35.70 2.87
568 1286 8.935614 AATATGTGATCATGGTCATTGAAGAT 57.064 30.769 12.77 0.00 35.70 2.40
569 1287 8.935614 ATATGTGATCATGGTCATTGAAGATT 57.064 30.769 12.77 0.00 35.70 2.40
571 1289 8.935614 ATGTGATCATGGTCATTGAAGATTAT 57.064 30.769 12.77 0.00 32.51 1.28
572 1290 8.161699 TGTGATCATGGTCATTGAAGATTATG 57.838 34.615 12.77 0.00 0.00 1.90
573 1291 7.994334 TGTGATCATGGTCATTGAAGATTATGA 59.006 33.333 12.77 0.00 31.74 2.15
574 1292 9.011095 GTGATCATGGTCATTGAAGATTATGAT 57.989 33.333 12.77 0.00 36.75 2.45
575 1293 9.582648 TGATCATGGTCATTGAAGATTATGATT 57.417 29.630 4.01 0.00 35.48 2.57
599 1317 3.822594 TTTTTGAGCGCGACATTGTAT 57.177 38.095 12.10 0.00 0.00 2.29
636 1354 0.112801 AGCGAGTAGGATACCCCTCC 59.887 60.000 0.00 0.00 43.31 4.30
638 1356 1.756690 GCGAGTAGGATACCCCTCCAA 60.757 57.143 0.00 0.00 43.31 3.53
646 1364 3.913163 AGGATACCCCTCCAATCTCATTC 59.087 47.826 0.00 0.00 43.31 2.67
658 1376 2.031258 TCTCATTCGCCGGCAAATAA 57.969 45.000 28.98 14.91 0.00 1.40
669 1387 2.620242 CGGCAAATAAGCAAAGCCATT 58.380 42.857 0.00 0.00 45.47 3.16
703 1421 7.362920 GGCCCTAAACATTGCATAACCATATAG 60.363 40.741 0.00 0.00 0.00 1.31
721 1445 8.244802 ACCATATAGTAGTCGATTACATCAAGC 58.755 37.037 18.85 0.00 0.00 4.01
779 1505 0.881796 GGCACTAAACTCCCTTGCAC 59.118 55.000 0.00 0.00 34.76 4.57
786 1512 0.763035 AACTCCCTTGCACCGTTACT 59.237 50.000 0.00 0.00 0.00 2.24
790 1516 1.740296 CCTTGCACCGTTACTCCCG 60.740 63.158 0.00 0.00 0.00 5.14
848 1574 2.501610 CGGAGGACTAGCCCTTGC 59.498 66.667 0.00 0.00 36.49 4.01
849 1575 2.911928 GGAGGACTAGCCCTTGCC 59.088 66.667 0.00 0.00 36.49 4.52
889 1618 5.661458 CAACAAATAGTACTCGGATCCTGT 58.339 41.667 10.75 11.04 0.00 4.00
900 1629 1.003118 CGGATCCTGTCTTCCCAAACA 59.997 52.381 10.75 0.00 0.00 2.83
1065 1805 2.507944 GACATCCTGATGGCCGCT 59.492 61.111 11.56 0.00 40.97 5.52
1473 2385 9.385902 GTACATATATGCTGTTAATTGCACTTG 57.614 33.333 12.79 6.16 42.26 3.16
1476 2388 3.266541 TGCTGTTAATTGCACTTGACG 57.733 42.857 7.12 4.04 33.94 4.35
1622 2536 6.803807 GGAAATACAGAGCACACAAAATTCTC 59.196 38.462 0.00 0.00 0.00 2.87
1862 2777 6.037098 AGATGAATACTGACGCTAACTGAAC 58.963 40.000 0.00 0.00 0.00 3.18
1935 6111 2.052782 ACTTGGTTGAACTGACACCC 57.947 50.000 0.00 0.00 0.00 4.61
1941 6117 2.031157 GGTTGAACTGACACCCGATTTG 60.031 50.000 0.00 0.00 0.00 2.32
1987 6166 9.601217 AAACATATTTAGTGATCTAAACGCTCT 57.399 29.630 0.00 0.00 45.19 4.09
1988 6167 9.601217 AACATATTTAGTGATCTAAACGCTCTT 57.399 29.630 0.00 0.00 45.19 2.85
2005 6184 9.530633 AAACGCTCTTATATTAGTTTACAGAGG 57.469 33.333 0.00 0.00 31.14 3.69
2006 6185 7.659186 ACGCTCTTATATTAGTTTACAGAGGG 58.341 38.462 8.36 8.36 42.53 4.30
2007 6186 7.504911 ACGCTCTTATATTAGTTTACAGAGGGA 59.495 37.037 14.96 0.00 40.49 4.20
2008 6187 8.024285 CGCTCTTATATTAGTTTACAGAGGGAG 58.976 40.741 4.76 0.00 40.49 4.30
2009 6188 8.862085 GCTCTTATATTAGTTTACAGAGGGAGT 58.138 37.037 0.00 0.00 0.00 3.85
2110 6289 7.111353 TGTTGAATTGTTTTATTTTAGCGGC 57.889 32.000 0.00 0.00 0.00 6.53
2133 6312 4.229096 CGTTATTTGTCAAGCTGCACAAT 58.771 39.130 10.69 5.39 32.60 2.71
2134 6313 4.321745 CGTTATTTGTCAAGCTGCACAATC 59.678 41.667 10.69 3.62 32.60 2.67
2143 6322 2.937994 GCTGCACAATCGTAGCTATG 57.062 50.000 6.62 6.62 40.97 2.23
2194 6373 4.349342 TGTTTATTTTCCATGCCCCTGTTT 59.651 37.500 0.00 0.00 0.00 2.83
2249 6428 3.601277 GCCTCATCTCATGCGATGA 57.399 52.632 23.33 23.33 45.46 2.92
2259 6438 3.131755 TCTCATGCGATGACATCTCACTT 59.868 43.478 10.20 0.00 35.06 3.16
2260 6439 4.339247 TCTCATGCGATGACATCTCACTTA 59.661 41.667 10.20 0.00 35.06 2.24
2261 6440 4.363138 TCATGCGATGACATCTCACTTAC 58.637 43.478 10.20 0.00 33.59 2.34
2343 6522 3.068873 GTCCAGAGCTACTAGTGGATTGG 59.931 52.174 10.90 13.44 41.14 3.16
2347 6526 4.037446 CAGAGCTACTAGTGGATTGGTCTC 59.963 50.000 10.90 5.88 31.19 3.36
2367 6546 4.778427 TCTCGCTCTCTATATCCTGAGGTA 59.222 45.833 0.00 0.00 0.00 3.08
2431 6610 6.480524 TCAGGATGAACAAACAATACTTCG 57.519 37.500 0.00 0.00 45.97 3.79
2433 6612 6.147164 TCAGGATGAACAAACAATACTTCGAC 59.853 38.462 0.00 0.00 45.97 4.20
2436 6615 5.570262 TGAACAAACAATACTTCGACGAG 57.430 39.130 0.00 0.00 0.00 4.18
2458 6637 2.299582 CAGAAATGGGGCAACAATGACA 59.700 45.455 0.00 0.00 35.69 3.58
2619 6798 1.990563 GTCAAAATGGACGACGACGAT 59.009 47.619 15.32 0.00 42.66 3.73
2620 6799 1.989864 TCAAAATGGACGACGACGATG 59.010 47.619 15.32 0.00 42.66 3.84
2692 6883 2.604174 AAAACGCTGCGACTTCCCG 61.604 57.895 30.47 0.00 0.00 5.14
2715 6906 2.032620 GACTCGACCCATGACTACCAT 58.967 52.381 0.00 0.00 35.44 3.55
2743 6934 0.690762 TCAAAGCCCTAGGTTCGCTT 59.309 50.000 15.67 15.67 44.51 4.68
2747 6938 1.674322 GCCCTAGGTTCGCTTGCAA 60.674 57.895 8.29 0.00 0.00 4.08
2748 6939 1.648467 GCCCTAGGTTCGCTTGCAAG 61.648 60.000 22.44 22.44 0.00 4.01
2829 7032 1.978782 GACGACGACGATTTTTACCGT 59.021 47.619 15.32 0.00 42.66 4.83
2903 7106 1.153369 GCATGCGCACCTTCCTCTA 60.153 57.895 14.90 0.00 38.36 2.43
2907 7110 0.107703 TGCGCACCTTCCTCTAATGG 60.108 55.000 5.66 0.00 0.00 3.16
2935 7139 2.362375 TTCCTGCATTTCGGGCCC 60.362 61.111 13.57 13.57 41.21 5.80
3026 7230 6.546972 TGTTTTGTCATAATGCAGTCGTAA 57.453 33.333 0.00 0.00 0.00 3.18
3080 7284 7.251281 AGTAAATTTGCGCTCTATTTTTCCTC 58.749 34.615 9.73 2.44 0.00 3.71
3099 7303 5.411781 TCCTCTGAGCGAAGAGTAAATTTC 58.588 41.667 15.03 0.00 41.89 2.17
3109 7313 5.179368 CGAAGAGTAAATTTCCACTTGCAGA 59.821 40.000 0.00 0.00 0.00 4.26
3131 7335 6.255237 CAGATCAATACTGCAGACACTACTTG 59.745 42.308 23.35 11.90 0.00 3.16
3195 7401 5.768317 TGTGTGCTTGGAAAATTAACTAGC 58.232 37.500 0.00 0.00 0.00 3.42
3202 7408 9.402320 TGCTTGGAAAATTAACTAGCATATGTA 57.598 29.630 4.29 0.00 32.73 2.29
3227 7433 3.508845 AGACATGCAACAAAGTAGGGT 57.491 42.857 0.00 0.00 0.00 4.34
3235 7441 4.103469 TGCAACAAAGTAGGGTCTCCTTTA 59.897 41.667 0.00 0.00 41.56 1.85
3236 7442 4.695928 GCAACAAAGTAGGGTCTCCTTTAG 59.304 45.833 0.00 0.00 41.56 1.85
3243 7449 3.876309 AGGGTCTCCTTTAGTTTGCAA 57.124 42.857 0.00 0.00 41.56 4.08
3244 7450 3.756117 AGGGTCTCCTTTAGTTTGCAAG 58.244 45.455 0.00 0.00 41.56 4.01
3245 7451 3.394606 AGGGTCTCCTTTAGTTTGCAAGA 59.605 43.478 0.00 0.00 41.56 3.02
3246 7452 4.141251 AGGGTCTCCTTTAGTTTGCAAGAA 60.141 41.667 0.00 0.00 41.56 2.52
3247 7453 4.767409 GGGTCTCCTTTAGTTTGCAAGAAT 59.233 41.667 0.00 0.00 0.00 2.40
3248 7454 5.243954 GGGTCTCCTTTAGTTTGCAAGAATT 59.756 40.000 0.00 0.00 0.00 2.17
3249 7455 6.239317 GGGTCTCCTTTAGTTTGCAAGAATTT 60.239 38.462 0.00 0.00 0.00 1.82
3250 7456 7.210174 GGTCTCCTTTAGTTTGCAAGAATTTT 58.790 34.615 0.00 0.00 0.00 1.82
3251 7457 8.357402 GGTCTCCTTTAGTTTGCAAGAATTTTA 58.643 33.333 0.00 0.00 0.00 1.52
3252 7458 9.914131 GTCTCCTTTAGTTTGCAAGAATTTTAT 57.086 29.630 0.00 0.00 0.00 1.40
3312 7518 3.764434 TCTTTACAACTTGTTTGGCACCA 59.236 39.130 0.00 0.00 39.84 4.17
3339 7545 4.741321 TTGGGGCAGAATTCATGAAATC 57.259 40.909 13.09 13.91 0.00 2.17
3354 7560 6.331845 TCATGAAATCCAATTGTGAATTCCG 58.668 36.000 15.93 10.61 0.00 4.30
3377 7583 1.347378 ACCAACATGTTTGATTGCCCC 59.653 47.619 16.01 0.00 0.00 5.80
3405 7611 3.189080 TGGCTGTCAGAATTCATTTCACG 59.811 43.478 8.44 0.00 36.75 4.35
3417 7623 3.869065 TCATTTCACGGTTCCATAGGTC 58.131 45.455 0.00 0.00 0.00 3.85
3440 7646 5.701855 CCGAACCGGTACATAAAACAAATT 58.298 37.500 8.00 0.00 42.73 1.82
3443 7649 7.148440 CCGAACCGGTACATAAAACAAATTCTA 60.148 37.037 8.00 0.00 42.73 2.10
3445 7651 8.851541 AACCGGTACATAAAACAAATTCTAGA 57.148 30.769 8.00 0.00 0.00 2.43
3477 7684 4.951603 ACCATTCCCAAATCCAATCTCTT 58.048 39.130 0.00 0.00 0.00 2.85
3490 7697 0.173708 ATCTCTTTCGACGCCCTCAC 59.826 55.000 0.00 0.00 0.00 3.51
3493 7700 1.446272 CTTTCGACGCCCTCACCTC 60.446 63.158 0.00 0.00 0.00 3.85
3502 7709 2.669133 CCCTCACCTCGCCATCCAA 61.669 63.158 0.00 0.00 0.00 3.53
3523 7730 0.978146 CCCTCGTCTCCTTCCACCAT 60.978 60.000 0.00 0.00 0.00 3.55
3584 7791 4.889112 AGGCCGCCGGAGTCGATA 62.889 66.667 7.68 0.00 39.00 2.92
3591 7798 2.496291 CCGGAGTCGATACCCCACC 61.496 68.421 0.00 0.00 39.00 4.61
3601 7808 1.207488 ATACCCCACCAGCAGAGCAA 61.207 55.000 0.00 0.00 0.00 3.91
3607 7814 1.340405 CCACCAGCAGAGCAACCTAAT 60.340 52.381 0.00 0.00 0.00 1.73
3612 7819 3.276857 CAGCAGAGCAACCTAATGTCAT 58.723 45.455 0.00 0.00 0.00 3.06
3644 7851 0.247460 CACCGAGCACATCTCTCCAA 59.753 55.000 0.00 0.00 39.70 3.53
3664 7871 0.546747 CCCCCTCTTGTACCTCACCA 60.547 60.000 0.00 0.00 0.00 4.17
3667 7874 1.645710 CCTCTTGTACCTCACCACCT 58.354 55.000 0.00 0.00 0.00 4.00
3724 7931 2.500098 TCCTACGAATCAAGTTCCCAGG 59.500 50.000 0.00 0.00 36.38 4.45
3741 7948 3.072038 CCCAGGATCACTATGAAGATGCA 59.928 47.826 0.00 0.00 35.35 3.96
3745 7952 6.070938 CCAGGATCACTATGAAGATGCATAGA 60.071 42.308 13.73 0.00 46.81 1.98
3754 7961 8.748412 ACTATGAAGATGCATAGAGGTTAGATC 58.252 37.037 13.73 0.00 46.81 2.75
3767 7974 6.629156 AGAGGTTAGATCTGATCCTTACCAT 58.371 40.000 23.78 14.93 30.99 3.55
3776 7983 2.625314 TGATCCTTACCATCTCGAGCAG 59.375 50.000 7.81 1.97 0.00 4.24
3777 7984 0.747255 TCCTTACCATCTCGAGCAGC 59.253 55.000 7.81 0.00 0.00 5.25
3792 7999 1.202698 AGCAGCGAAAGAAGAGTTGGT 60.203 47.619 0.00 0.00 0.00 3.67
3797 8004 3.131396 GCGAAAGAAGAGTTGGTCAAGA 58.869 45.455 0.00 0.00 0.00 3.02
3834 8041 3.945346 TCCCGCAGCTAGAATTTACAAA 58.055 40.909 0.00 0.00 0.00 2.83
3843 8050 5.710567 AGCTAGAATTTACAAACTCCCAACC 59.289 40.000 0.00 0.00 0.00 3.77
3844 8051 5.475564 GCTAGAATTTACAAACTCCCAACCA 59.524 40.000 0.00 0.00 0.00 3.67
3846 8053 5.454966 AGAATTTACAAACTCCCAACCACT 58.545 37.500 0.00 0.00 0.00 4.00
3860 8067 3.055747 CCAACCACTAGAGTTTCTCCCTC 60.056 52.174 0.00 0.00 0.00 4.30
3882 8089 5.451908 TCAAACGAAGATTGAAAGCATGAC 58.548 37.500 0.00 0.00 46.01 3.06
3902 8109 1.874345 CTCTCTACCGGGTTGCACGT 61.874 60.000 4.31 0.00 0.00 4.49
3903 8110 1.736645 CTCTACCGGGTTGCACGTG 60.737 63.158 12.28 12.28 0.00 4.49
3904 8111 2.029964 CTACCGGGTTGCACGTGT 59.970 61.111 18.38 0.00 0.00 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
138 855 7.814264 AGTCTTGAATCTGTGAACATTTCTT 57.186 32.000 7.41 0.00 0.00 2.52
294 1011 9.433317 CGTAAGCATATTTAAATCGTGAACATT 57.567 29.630 3.39 2.75 0.00 2.71
339 1057 7.921786 ATCACTTTTGATTTCGGTGAGATTA 57.078 32.000 0.00 0.00 39.66 1.75
343 1061 6.147821 ACACTATCACTTTTGATTTCGGTGAG 59.852 38.462 0.00 0.00 39.66 3.51
347 1065 8.425577 AGATACACTATCACTTTTGATTTCGG 57.574 34.615 0.00 0.00 39.66 4.30
348 1066 8.262588 CGAGATACACTATCACTTTTGATTTCG 58.737 37.037 0.00 0.00 39.66 3.46
354 1072 8.697960 CATCATCGAGATACACTATCACTTTTG 58.302 37.037 0.00 0.00 37.65 2.44
355 1073 7.383572 GCATCATCGAGATACACTATCACTTTT 59.616 37.037 0.00 0.00 37.65 2.27
357 1075 6.015940 TGCATCATCGAGATACACTATCACTT 60.016 38.462 0.00 0.00 37.65 3.16
385 1103 1.751927 GAAGCCCTGTGCAGATGGG 60.752 63.158 12.79 12.79 44.83 4.00
386 1104 1.751927 GGAAGCCCTGTGCAGATGG 60.752 63.158 0.34 0.34 44.83 3.51
387 1105 0.395311 ATGGAAGCCCTGTGCAGATG 60.395 55.000 0.02 0.00 44.83 2.90
388 1106 1.216064 TATGGAAGCCCTGTGCAGAT 58.784 50.000 0.02 0.00 44.83 2.90
389 1107 0.991146 TTATGGAAGCCCTGTGCAGA 59.009 50.000 0.02 0.00 44.83 4.26
390 1108 1.386533 CTTATGGAAGCCCTGTGCAG 58.613 55.000 0.00 0.00 44.83 4.41
391 1109 0.034186 CCTTATGGAAGCCCTGTGCA 60.034 55.000 0.00 0.00 37.85 4.57
392 1110 0.034089 ACCTTATGGAAGCCCTGTGC 60.034 55.000 0.81 0.00 37.37 4.57
393 1111 2.025887 AGAACCTTATGGAAGCCCTGTG 60.026 50.000 0.81 0.00 37.04 3.66
394 1112 2.239907 GAGAACCTTATGGAAGCCCTGT 59.760 50.000 0.81 0.00 37.04 4.00
395 1113 2.743183 CGAGAACCTTATGGAAGCCCTG 60.743 54.545 0.81 0.00 37.04 4.45
396 1114 1.486726 CGAGAACCTTATGGAAGCCCT 59.513 52.381 0.81 0.00 37.04 5.19
397 1115 1.475213 CCGAGAACCTTATGGAAGCCC 60.475 57.143 0.81 0.00 37.04 5.19
398 1116 1.954927 CCGAGAACCTTATGGAAGCC 58.045 55.000 0.81 0.00 37.04 4.35
399 1117 1.300481 GCCGAGAACCTTATGGAAGC 58.700 55.000 0.81 0.00 37.04 3.86
400 1118 1.475213 GGGCCGAGAACCTTATGGAAG 60.475 57.143 0.81 0.00 37.04 3.46
401 1119 0.544697 GGGCCGAGAACCTTATGGAA 59.455 55.000 0.81 0.00 37.04 3.53
402 1120 0.326238 AGGGCCGAGAACCTTATGGA 60.326 55.000 0.00 0.00 31.68 3.41
403 1121 0.546598 AAGGGCCGAGAACCTTATGG 59.453 55.000 0.00 0.00 44.92 2.74
404 1122 1.486726 AGAAGGGCCGAGAACCTTATG 59.513 52.381 0.00 0.00 46.64 1.90
405 1123 1.880941 AGAAGGGCCGAGAACCTTAT 58.119 50.000 0.00 0.00 46.64 1.73
406 1124 1.553704 GAAGAAGGGCCGAGAACCTTA 59.446 52.381 0.00 0.00 46.64 2.69
408 1126 1.554583 GGAAGAAGGGCCGAGAACCT 61.555 60.000 0.00 0.00 39.21 3.50
409 1127 1.078356 GGAAGAAGGGCCGAGAACC 60.078 63.158 0.00 0.00 0.00 3.62
410 1128 4.619852 GGAAGAAGGGCCGAGAAC 57.380 61.111 0.00 0.00 0.00 3.01
416 1134 0.393808 TAATGCACGGAAGAAGGGCC 60.394 55.000 0.00 0.00 0.00 5.80
417 1135 1.132453 GTTAATGCACGGAAGAAGGGC 59.868 52.381 0.00 0.00 0.00 5.19
418 1136 2.678336 GAGTTAATGCACGGAAGAAGGG 59.322 50.000 0.00 0.00 0.00 3.95
419 1137 3.334691 TGAGTTAATGCACGGAAGAAGG 58.665 45.455 0.00 0.00 0.00 3.46
420 1138 5.327091 CATTGAGTTAATGCACGGAAGAAG 58.673 41.667 0.00 0.00 39.71 2.85
421 1139 4.155826 CCATTGAGTTAATGCACGGAAGAA 59.844 41.667 2.13 0.00 43.90 2.52
422 1140 3.689161 CCATTGAGTTAATGCACGGAAGA 59.311 43.478 2.13 0.00 43.90 2.87
423 1141 3.731867 GCCATTGAGTTAATGCACGGAAG 60.732 47.826 2.13 0.00 43.90 3.46
424 1142 2.163412 GCCATTGAGTTAATGCACGGAA 59.837 45.455 2.13 0.00 43.90 4.30
425 1143 1.742831 GCCATTGAGTTAATGCACGGA 59.257 47.619 2.13 0.00 43.90 4.69
426 1144 1.745087 AGCCATTGAGTTAATGCACGG 59.255 47.619 2.13 0.00 43.90 4.94
427 1145 2.162208 ACAGCCATTGAGTTAATGCACG 59.838 45.455 2.13 0.00 43.90 5.34
428 1146 3.504863 CACAGCCATTGAGTTAATGCAC 58.495 45.455 2.13 0.00 43.90 4.57
429 1147 2.094597 GCACAGCCATTGAGTTAATGCA 60.095 45.455 2.13 0.00 43.90 3.96
430 1148 2.533266 GCACAGCCATTGAGTTAATGC 58.467 47.619 2.13 0.00 43.90 3.56
443 1161 2.092882 GTAAGTCGTCGGCACAGCC 61.093 63.158 0.00 0.00 46.75 4.85
444 1162 0.169672 TAGTAAGTCGTCGGCACAGC 59.830 55.000 0.00 0.00 0.00 4.40
445 1163 1.467734 AGTAGTAAGTCGTCGGCACAG 59.532 52.381 0.00 0.00 0.00 3.66
446 1164 1.198408 CAGTAGTAAGTCGTCGGCACA 59.802 52.381 0.00 0.00 0.00 4.57
447 1165 1.467035 CCAGTAGTAAGTCGTCGGCAC 60.467 57.143 0.00 0.00 0.00 5.01
448 1166 0.806868 CCAGTAGTAAGTCGTCGGCA 59.193 55.000 0.00 0.00 0.00 5.69
449 1167 0.100146 CCCAGTAGTAAGTCGTCGGC 59.900 60.000 0.00 0.00 0.00 5.54
450 1168 1.742761 TCCCAGTAGTAAGTCGTCGG 58.257 55.000 0.00 0.00 0.00 4.79
451 1169 3.545624 CGATTCCCAGTAGTAAGTCGTCG 60.546 52.174 0.00 0.00 0.00 5.12
452 1170 3.376546 ACGATTCCCAGTAGTAAGTCGTC 59.623 47.826 0.00 0.00 36.47 4.20
453 1171 3.128242 CACGATTCCCAGTAGTAAGTCGT 59.872 47.826 0.00 0.00 41.14 4.34
454 1172 3.488721 CCACGATTCCCAGTAGTAAGTCG 60.489 52.174 0.00 0.00 0.00 4.18
455 1173 3.181478 CCCACGATTCCCAGTAGTAAGTC 60.181 52.174 0.00 0.00 0.00 3.01
456 1174 2.764572 CCCACGATTCCCAGTAGTAAGT 59.235 50.000 0.00 0.00 0.00 2.24
457 1175 2.764572 ACCCACGATTCCCAGTAGTAAG 59.235 50.000 0.00 0.00 0.00 2.34
458 1176 2.498481 CACCCACGATTCCCAGTAGTAA 59.502 50.000 0.00 0.00 0.00 2.24
459 1177 2.104967 CACCCACGATTCCCAGTAGTA 58.895 52.381 0.00 0.00 0.00 1.82
460 1178 0.902531 CACCCACGATTCCCAGTAGT 59.097 55.000 0.00 0.00 0.00 2.73
461 1179 0.462047 GCACCCACGATTCCCAGTAG 60.462 60.000 0.00 0.00 0.00 2.57
462 1180 0.907704 AGCACCCACGATTCCCAGTA 60.908 55.000 0.00 0.00 0.00 2.74
463 1181 2.224159 AGCACCCACGATTCCCAGT 61.224 57.895 0.00 0.00 0.00 4.00
464 1182 1.746615 CAGCACCCACGATTCCCAG 60.747 63.158 0.00 0.00 0.00 4.45
465 1183 1.195442 TACAGCACCCACGATTCCCA 61.195 55.000 0.00 0.00 0.00 4.37
466 1184 0.180406 ATACAGCACCCACGATTCCC 59.820 55.000 0.00 0.00 0.00 3.97
467 1185 2.038387 AATACAGCACCCACGATTCC 57.962 50.000 0.00 0.00 0.00 3.01
468 1186 2.030457 CGAAATACAGCACCCACGATTC 59.970 50.000 0.00 0.00 0.00 2.52
469 1187 2.006888 CGAAATACAGCACCCACGATT 58.993 47.619 0.00 0.00 0.00 3.34
470 1188 1.066430 ACGAAATACAGCACCCACGAT 60.066 47.619 0.00 0.00 0.00 3.73
471 1189 0.319083 ACGAAATACAGCACCCACGA 59.681 50.000 0.00 0.00 0.00 4.35
472 1190 0.719465 GACGAAATACAGCACCCACG 59.281 55.000 0.00 0.00 0.00 4.94
473 1191 2.000447 GAGACGAAATACAGCACCCAC 59.000 52.381 0.00 0.00 0.00 4.61
474 1192 1.621317 TGAGACGAAATACAGCACCCA 59.379 47.619 0.00 0.00 0.00 4.51
475 1193 2.380084 TGAGACGAAATACAGCACCC 57.620 50.000 0.00 0.00 0.00 4.61
476 1194 4.933330 TCTATGAGACGAAATACAGCACC 58.067 43.478 0.00 0.00 0.00 5.01
477 1195 6.887376 TTTCTATGAGACGAAATACAGCAC 57.113 37.500 0.00 0.00 0.00 4.40
484 1202 8.116753 CGCTTTTGTATTTCTATGAGACGAAAT 58.883 33.333 0.00 0.00 41.33 2.17
485 1203 7.117236 ACGCTTTTGTATTTCTATGAGACGAAA 59.883 33.333 0.00 0.00 34.08 3.46
486 1204 6.588756 ACGCTTTTGTATTTCTATGAGACGAA 59.411 34.615 0.00 0.00 0.00 3.85
487 1205 6.097356 ACGCTTTTGTATTTCTATGAGACGA 58.903 36.000 0.00 0.00 0.00 4.20
488 1206 6.332504 ACGCTTTTGTATTTCTATGAGACG 57.667 37.500 0.00 0.00 0.00 4.18
489 1207 9.031360 TGATACGCTTTTGTATTTCTATGAGAC 57.969 33.333 0.00 0.00 35.24 3.36
490 1208 9.031360 GTGATACGCTTTTGTATTTCTATGAGA 57.969 33.333 0.00 0.00 35.24 3.27
491 1209 8.276325 GGTGATACGCTTTTGTATTTCTATGAG 58.724 37.037 0.00 0.00 35.24 2.90
492 1210 7.225931 GGGTGATACGCTTTTGTATTTCTATGA 59.774 37.037 0.00 0.00 35.24 2.15
493 1211 7.011950 TGGGTGATACGCTTTTGTATTTCTATG 59.988 37.037 0.00 0.00 35.24 2.23
494 1212 7.051623 TGGGTGATACGCTTTTGTATTTCTAT 58.948 34.615 0.00 0.00 35.24 1.98
495 1213 6.408035 TGGGTGATACGCTTTTGTATTTCTA 58.592 36.000 0.00 0.00 35.24 2.10
496 1214 5.250200 TGGGTGATACGCTTTTGTATTTCT 58.750 37.500 0.00 0.00 35.24 2.52
497 1215 5.554822 TGGGTGATACGCTTTTGTATTTC 57.445 39.130 0.00 0.00 35.24 2.17
498 1216 6.524101 AATGGGTGATACGCTTTTGTATTT 57.476 33.333 0.00 0.00 35.24 1.40
499 1217 6.405397 GGAAATGGGTGATACGCTTTTGTATT 60.405 38.462 12.34 0.00 38.10 1.89
500 1218 5.067283 GGAAATGGGTGATACGCTTTTGTAT 59.933 40.000 12.34 0.00 38.10 2.29
501 1219 4.396790 GGAAATGGGTGATACGCTTTTGTA 59.603 41.667 12.34 0.00 38.10 2.41
502 1220 3.192633 GGAAATGGGTGATACGCTTTTGT 59.807 43.478 12.34 0.00 38.10 2.83
503 1221 3.443681 AGGAAATGGGTGATACGCTTTTG 59.556 43.478 12.34 0.00 38.10 2.44
504 1222 3.697166 AGGAAATGGGTGATACGCTTTT 58.303 40.909 8.79 8.79 39.74 2.27
505 1223 3.366052 AGGAAATGGGTGATACGCTTT 57.634 42.857 0.00 0.00 31.44 3.51
506 1224 3.199071 TGTAGGAAATGGGTGATACGCTT 59.801 43.478 0.00 0.00 31.67 4.68
507 1225 2.769663 TGTAGGAAATGGGTGATACGCT 59.230 45.455 0.00 0.00 31.67 5.07
508 1226 3.188159 TGTAGGAAATGGGTGATACGC 57.812 47.619 0.00 0.00 0.00 4.42
509 1227 6.017934 CAGAATTGTAGGAAATGGGTGATACG 60.018 42.308 0.00 0.00 0.00 3.06
510 1228 6.828785 ACAGAATTGTAGGAAATGGGTGATAC 59.171 38.462 0.00 0.00 35.25 2.24
511 1229 6.969043 ACAGAATTGTAGGAAATGGGTGATA 58.031 36.000 0.00 0.00 35.25 2.15
512 1230 5.831103 ACAGAATTGTAGGAAATGGGTGAT 58.169 37.500 0.00 0.00 35.25 3.06
513 1231 5.255397 ACAGAATTGTAGGAAATGGGTGA 57.745 39.130 0.00 0.00 35.25 4.02
514 1232 5.982890 AACAGAATTGTAGGAAATGGGTG 57.017 39.130 0.00 0.00 36.23 4.61
515 1233 6.074648 TCAAACAGAATTGTAGGAAATGGGT 58.925 36.000 0.00 0.00 36.23 4.51
516 1234 6.588719 TCAAACAGAATTGTAGGAAATGGG 57.411 37.500 0.00 0.00 36.23 4.00
517 1235 7.432869 TGTTCAAACAGAATTGTAGGAAATGG 58.567 34.615 0.00 0.00 38.76 3.16
518 1236 8.870160 TTGTTCAAACAGAATTGTAGGAAATG 57.130 30.769 0.00 0.00 40.50 2.32
523 1241 9.912634 ACATATTTGTTCAAACAGAATTGTAGG 57.087 29.630 0.00 0.00 40.50 3.18
526 1244 9.985730 ATCACATATTTGTTCAAACAGAATTGT 57.014 25.926 0.00 0.00 40.50 2.71
530 1248 9.628746 CATGATCACATATTTGTTCAAACAGAA 57.371 29.630 0.00 0.00 36.35 3.02
531 1249 8.245491 CCATGATCACATATTTGTTCAAACAGA 58.755 33.333 0.00 0.00 36.35 3.41
532 1250 8.030692 ACCATGATCACATATTTGTTCAAACAG 58.969 33.333 0.00 0.89 36.35 3.16
533 1251 7.894708 ACCATGATCACATATTTGTTCAAACA 58.105 30.769 0.00 0.00 35.09 2.83
534 1252 8.028354 TGACCATGATCACATATTTGTTCAAAC 58.972 33.333 0.00 0.00 35.09 2.93
535 1253 8.120140 TGACCATGATCACATATTTGTTCAAA 57.880 30.769 0.00 0.44 35.09 2.69
536 1254 7.700022 TGACCATGATCACATATTTGTTCAA 57.300 32.000 0.00 0.00 35.09 2.69
537 1255 7.885009 ATGACCATGATCACATATTTGTTCA 57.115 32.000 0.00 5.35 35.09 3.18
538 1256 8.407832 TCAATGACCATGATCACATATTTGTTC 58.592 33.333 0.00 0.00 35.09 3.18
539 1257 8.296211 TCAATGACCATGATCACATATTTGTT 57.704 30.769 0.00 0.00 35.09 2.83
540 1258 7.885009 TCAATGACCATGATCACATATTTGT 57.115 32.000 0.00 0.00 35.09 2.83
541 1259 8.626526 TCTTCAATGACCATGATCACATATTTG 58.373 33.333 0.00 0.00 35.09 2.32
542 1260 8.756486 TCTTCAATGACCATGATCACATATTT 57.244 30.769 0.00 0.00 35.09 1.40
543 1261 8.935614 ATCTTCAATGACCATGATCACATATT 57.064 30.769 0.00 0.00 35.09 1.28
544 1262 8.935614 AATCTTCAATGACCATGATCACATAT 57.064 30.769 0.00 0.00 35.09 1.78
546 1264 8.793592 CATAATCTTCAATGACCATGATCACAT 58.206 33.333 0.00 0.00 37.19 3.21
547 1265 7.994334 TCATAATCTTCAATGACCATGATCACA 59.006 33.333 0.00 0.00 0.00 3.58
548 1266 8.387190 TCATAATCTTCAATGACCATGATCAC 57.613 34.615 0.00 0.00 0.00 3.06
549 1267 9.582648 AATCATAATCTTCAATGACCATGATCA 57.417 29.630 0.00 0.00 35.06 2.92
579 1297 3.187432 TGATACAATGTCGCGCTCAAAAA 59.813 39.130 5.56 0.00 0.00 1.94
580 1298 2.739379 TGATACAATGTCGCGCTCAAAA 59.261 40.909 5.56 0.00 0.00 2.44
581 1299 2.342179 TGATACAATGTCGCGCTCAAA 58.658 42.857 5.56 0.00 0.00 2.69
582 1300 1.926510 CTGATACAATGTCGCGCTCAA 59.073 47.619 5.56 0.00 0.00 3.02
583 1301 1.134175 TCTGATACAATGTCGCGCTCA 59.866 47.619 5.56 5.08 0.00 4.26
584 1302 1.840181 TCTGATACAATGTCGCGCTC 58.160 50.000 5.56 0.00 0.00 5.03
585 1303 2.196749 CTTCTGATACAATGTCGCGCT 58.803 47.619 5.56 0.00 0.00 5.92
586 1304 1.258982 CCTTCTGATACAATGTCGCGC 59.741 52.381 0.00 0.00 0.00 6.86
587 1305 2.540515 ACCTTCTGATACAATGTCGCG 58.459 47.619 0.00 0.00 0.00 5.87
588 1306 4.683832 ACTACCTTCTGATACAATGTCGC 58.316 43.478 0.00 0.00 0.00 5.19
589 1307 7.591795 GTGATACTACCTTCTGATACAATGTCG 59.408 40.741 0.00 0.00 0.00 4.35
590 1308 8.414003 TGTGATACTACCTTCTGATACAATGTC 58.586 37.037 0.00 0.00 0.00 3.06
591 1309 8.306313 TGTGATACTACCTTCTGATACAATGT 57.694 34.615 0.00 0.00 0.00 2.71
592 1310 9.254133 CTTGTGATACTACCTTCTGATACAATG 57.746 37.037 0.00 0.00 0.00 2.82
593 1311 7.928706 GCTTGTGATACTACCTTCTGATACAAT 59.071 37.037 0.00 0.00 0.00 2.71
594 1312 7.265673 GCTTGTGATACTACCTTCTGATACAA 58.734 38.462 0.00 0.00 0.00 2.41
595 1313 6.459710 CGCTTGTGATACTACCTTCTGATACA 60.460 42.308 0.00 0.00 0.00 2.29
596 1314 5.915758 CGCTTGTGATACTACCTTCTGATAC 59.084 44.000 0.00 0.00 0.00 2.24
597 1315 5.826208 TCGCTTGTGATACTACCTTCTGATA 59.174 40.000 0.00 0.00 0.00 2.15
598 1316 4.645136 TCGCTTGTGATACTACCTTCTGAT 59.355 41.667 0.00 0.00 0.00 2.90
599 1317 4.014406 TCGCTTGTGATACTACCTTCTGA 58.986 43.478 0.00 0.00 0.00 3.27
636 1354 0.451383 TTTGCCGGCGAATGAGATTG 59.549 50.000 25.64 0.00 0.00 2.67
638 1356 2.254546 TATTTGCCGGCGAATGAGAT 57.745 45.000 40.47 24.35 32.71 2.75
646 1364 1.413008 GCTTTGCTTATTTGCCGGCG 61.413 55.000 23.90 7.24 0.00 6.46
669 1387 3.306641 GCAATGTTTAGGGCCATTGTTGA 60.307 43.478 6.18 0.00 46.11 3.18
779 1505 0.601841 ACTTTGCACGGGAGTAACGG 60.602 55.000 0.00 0.00 44.67 4.44
786 1512 0.821301 TGCATTGACTTTGCACGGGA 60.821 50.000 0.00 0.00 44.73 5.14
811 1537 1.072331 GGTGTGTCCTGTTCTCATGGT 59.928 52.381 0.00 0.00 0.00 3.55
848 1574 2.497770 CGTGTAACCGCCTAGGGG 59.502 66.667 18.81 18.81 46.96 4.79
889 1618 2.158519 GGAGGGAAAGTGTTTGGGAAGA 60.159 50.000 0.00 0.00 0.00 2.87
900 1629 1.228154 GTGCGTTGGGAGGGAAAGT 60.228 57.895 0.00 0.00 0.00 2.66
1020 1760 1.860078 GAGTTTGTGGAAGACGGCG 59.140 57.895 4.80 4.80 0.00 6.46
1065 1805 2.427320 GAGCTGCACACCTGGTCA 59.573 61.111 1.02 0.00 39.04 4.02
1154 1894 4.778143 GGCGGTTGATGCGGGAGT 62.778 66.667 0.00 0.00 0.00 3.85
1251 1991 1.689813 TCGCTGAGGTACAACAGGAAA 59.310 47.619 16.39 0.00 36.06 3.13
1258 1998 0.038251 CACTGCTCGCTGAGGTACAA 60.038 55.000 2.72 0.00 0.00 2.41
1333 2074 9.790389 ACGAAACACAAAAATAAACATCTGTAA 57.210 25.926 0.00 0.00 0.00 2.41
1376 2121 3.269643 AGGCTAGCTACCAAGGGAAAATT 59.730 43.478 15.72 0.00 0.00 1.82
1388 2133 1.072159 CCATGCCCAGGCTAGCTAC 59.928 63.158 15.72 0.00 42.51 3.58
1622 2536 2.205074 CTATTACGGGCAGCTGAACAG 58.795 52.381 20.43 12.51 0.00 3.16
1663 2577 9.364989 CAAATTCGACAAACAATTATTATGGGT 57.635 29.630 0.00 0.00 0.00 4.51
1692 2606 6.645415 TCTTCCGTCTCTGAAATCTAAACAAC 59.355 38.462 0.00 0.00 0.00 3.32
1743 2657 5.815581 AGTTCAGGCCATTTAACAGTATCA 58.184 37.500 5.01 0.00 0.00 2.15
1823 2737 9.645059 CAGTATTCATCTCTTTAAGTCTGAACA 57.355 33.333 8.06 0.00 33.60 3.18
1905 3036 8.923683 GTCAGTTCAACCAAGTAAAGTCTATAC 58.076 37.037 0.00 0.00 0.00 1.47
1935 6111 8.624701 ATTTTTGCATTACTCTGATCAAATCG 57.375 30.769 0.00 0.00 0.00 3.34
1979 6158 9.530633 CCTCTGTAAACTAATATAAGAGCGTTT 57.469 33.333 0.00 0.00 0.00 3.60
1980 6159 8.142551 CCCTCTGTAAACTAATATAAGAGCGTT 58.857 37.037 0.00 0.00 0.00 4.84
1981 6160 7.504911 TCCCTCTGTAAACTAATATAAGAGCGT 59.495 37.037 0.00 0.00 0.00 5.07
1982 6161 7.883217 TCCCTCTGTAAACTAATATAAGAGCG 58.117 38.462 0.00 0.00 0.00 5.03
1983 6162 8.862085 ACTCCCTCTGTAAACTAATATAAGAGC 58.138 37.037 0.00 0.00 0.00 4.09
1990 6169 9.575868 CAGATCTACTCCCTCTGTAAACTAATA 57.424 37.037 0.00 0.00 33.34 0.98
1991 6170 8.062536 ACAGATCTACTCCCTCTGTAAACTAAT 58.937 37.037 0.00 0.00 45.79 1.73
1992 6171 7.411808 ACAGATCTACTCCCTCTGTAAACTAA 58.588 38.462 0.00 0.00 45.79 2.24
1993 6172 6.971340 ACAGATCTACTCCCTCTGTAAACTA 58.029 40.000 0.00 0.00 45.79 2.24
1994 6173 5.833340 ACAGATCTACTCCCTCTGTAAACT 58.167 41.667 0.00 0.00 45.79 2.66
1995 6174 6.263617 CCTACAGATCTACTCCCTCTGTAAAC 59.736 46.154 11.49 0.00 46.35 2.01
1996 6175 6.068971 ACCTACAGATCTACTCCCTCTGTAAA 60.069 42.308 11.49 0.00 46.35 2.01
1997 6176 5.432390 ACCTACAGATCTACTCCCTCTGTAA 59.568 44.000 11.49 0.00 46.35 2.41
1998 6177 4.976442 ACCTACAGATCTACTCCCTCTGTA 59.024 45.833 10.29 10.29 45.79 2.74
2000 6179 4.447138 ACCTACAGATCTACTCCCTCTG 57.553 50.000 0.00 0.00 41.69 3.35
2001 6180 6.593759 TTTACCTACAGATCTACTCCCTCT 57.406 41.667 0.00 0.00 0.00 3.69
2002 6181 9.536510 AATATTTACCTACAGATCTACTCCCTC 57.463 37.037 0.00 0.00 0.00 4.30
2003 6182 9.315363 CAATATTTACCTACAGATCTACTCCCT 57.685 37.037 0.00 0.00 0.00 4.20
2004 6183 9.091220 ACAATATTTACCTACAGATCTACTCCC 57.909 37.037 0.00 0.00 0.00 4.30
2007 6186 9.656323 TGGACAATATTTACCTACAGATCTACT 57.344 33.333 0.00 0.00 0.00 2.57
2010 6189 7.934120 GCTTGGACAATATTTACCTACAGATCT 59.066 37.037 0.00 0.00 0.00 2.75
2011 6190 7.715249 TGCTTGGACAATATTTACCTACAGATC 59.285 37.037 8.53 0.00 0.00 2.75
2012 6191 7.573710 TGCTTGGACAATATTTACCTACAGAT 58.426 34.615 8.53 0.00 0.00 2.90
2013 6192 6.953101 TGCTTGGACAATATTTACCTACAGA 58.047 36.000 8.53 0.00 0.00 3.41
2014 6193 7.498900 TCATGCTTGGACAATATTTACCTACAG 59.501 37.037 0.00 4.57 0.00 2.74
2110 6289 2.031245 TGTGCAGCTTGACAAATAACGG 60.031 45.455 0.00 0.00 0.00 4.44
2164 6343 7.774625 AGGGGCATGGAAAATAAACAAATTATG 59.225 33.333 0.00 0.00 34.41 1.90
2169 6348 4.349342 ACAGGGGCATGGAAAATAAACAAA 59.651 37.500 0.00 0.00 0.00 2.83
2173 6352 5.574970 AAAACAGGGGCATGGAAAATAAA 57.425 34.783 0.00 0.00 0.00 1.40
2174 6353 5.574970 AAAAACAGGGGCATGGAAAATAA 57.425 34.783 0.00 0.00 0.00 1.40
2194 6373 2.042979 AGGGAGCCCTGCAAAGATAAAA 59.957 45.455 7.41 0.00 46.22 1.52
2249 6428 3.244078 TGCAAACTCGGTAAGTGAGATGT 60.244 43.478 0.00 0.00 38.58 3.06
2259 6438 3.887621 ATTAGCTCTGCAAACTCGGTA 57.112 42.857 0.00 0.00 0.00 4.02
2260 6439 2.770164 ATTAGCTCTGCAAACTCGGT 57.230 45.000 0.00 0.00 0.00 4.69
2261 6440 4.433615 TCTTATTAGCTCTGCAAACTCGG 58.566 43.478 0.00 0.00 0.00 4.63
2343 6522 3.938963 CCTCAGGATATAGAGAGCGAGAC 59.061 52.174 0.00 0.00 33.74 3.36
2347 6526 5.464057 CGTATACCTCAGGATATAGAGAGCG 59.536 48.000 0.00 0.00 33.74 5.03
2367 6546 1.679032 GCTTGCCCAAGAACCTCGTAT 60.679 52.381 11.96 0.00 40.79 3.06
2431 6610 0.960364 TTGCCCCATTTCTGCTCGTC 60.960 55.000 0.00 0.00 0.00 4.20
2433 6612 1.243342 TGTTGCCCCATTTCTGCTCG 61.243 55.000 0.00 0.00 0.00 5.03
2436 6615 1.275856 TCATTGTTGCCCCATTTCTGC 59.724 47.619 0.00 0.00 0.00 4.26
2458 6637 2.768344 AATCCCCTCGGCATCGGT 60.768 61.111 0.00 0.00 36.95 4.69
2574 6753 2.024918 GCAATGGCGTATGTCCAGG 58.975 57.895 4.73 0.00 36.98 4.45
2692 6883 1.381928 TAGTCATGGGTCGAGTCGCC 61.382 60.000 7.92 12.32 0.00 5.54
2715 6906 1.825474 CTAGGGCTTTGAACCTCGAGA 59.175 52.381 15.71 0.00 38.30 4.04
2756 6959 2.187946 CCGGACTGATGGACCAGC 59.812 66.667 1.75 1.75 37.68 4.85
2829 7032 1.755179 CCTCGTAACGGGAAGGACTA 58.245 55.000 0.00 0.00 0.00 2.59
2918 7122 2.362375 GGGCCCGAAATGCAGGAA 60.362 61.111 5.69 0.00 0.00 3.36
2935 7139 0.455633 GCCTACACGTACACGGACAG 60.456 60.000 6.72 0.00 44.95 3.51
2941 7145 1.887320 CTACACGCCTACACGTACAC 58.113 55.000 0.00 0.00 46.34 2.90
3053 7257 6.194692 GGAAAAATAGAGCGCAAATTTACTCG 59.805 38.462 11.47 6.05 34.31 4.18
3080 7284 4.932200 AGTGGAAATTTACTCTTCGCTCAG 59.068 41.667 1.27 0.00 0.00 3.35
3109 7313 5.871524 CACAAGTAGTGTCTGCAGTATTGAT 59.128 40.000 14.67 0.00 43.40 2.57
3151 7356 6.885918 ACACATGTCATATGTTTCATTCCTGA 59.114 34.615 1.90 0.00 0.00 3.86
3152 7357 6.970613 CACACATGTCATATGTTTCATTCCTG 59.029 38.462 1.90 4.92 0.00 3.86
3153 7358 6.405065 GCACACATGTCATATGTTTCATTCCT 60.405 38.462 1.90 0.00 0.00 3.36
3202 7408 6.493458 ACCCTACTTTGTTGCATGTCTATTTT 59.507 34.615 0.00 0.00 0.00 1.82
3224 7430 3.751518 TCTTGCAAACTAAAGGAGACCC 58.248 45.455 0.00 0.00 0.00 4.46
3286 7492 6.147985 GGTGCCAAACAAGTTGTAAAGAAAAA 59.852 34.615 9.37 0.00 35.23 1.94
3298 7504 4.128643 CAAATGATTGGTGCCAAACAAGT 58.871 39.130 15.96 6.51 40.94 3.16
3312 7518 4.717778 TCATGAATTCTGCCCCAAATGATT 59.282 37.500 7.05 0.00 0.00 2.57
3323 7529 6.814644 TCACAATTGGATTTCATGAATTCTGC 59.185 34.615 22.90 11.98 0.00 4.26
3325 7531 9.953565 AATTCACAATTGGATTTCATGAATTCT 57.046 25.926 22.90 7.60 39.78 2.40
3339 7545 2.556189 TGGTGTCGGAATTCACAATTGG 59.444 45.455 10.83 0.00 36.43 3.16
3354 7560 3.059166 GGCAATCAAACATGTTGGTGTC 58.941 45.455 12.82 1.92 0.00 3.67
3377 7583 2.749076 TGAATTCTGACAGCCAATTCCG 59.251 45.455 19.37 0.00 36.20 4.30
3386 7592 5.362556 AACCGTGAAATGAATTCTGACAG 57.637 39.130 7.05 0.00 38.92 3.51
3434 7640 9.686683 AATGGTAGCTTATTGTCTAGAATTTGT 57.313 29.630 0.00 0.00 0.00 2.83
3440 7646 5.903010 TGGGAATGGTAGCTTATTGTCTAGA 59.097 40.000 0.00 0.00 0.00 2.43
3443 7649 5.450818 TTGGGAATGGTAGCTTATTGTCT 57.549 39.130 0.00 0.00 0.00 3.41
3445 7651 5.598417 GGATTTGGGAATGGTAGCTTATTGT 59.402 40.000 0.00 0.00 0.00 2.71
3477 7684 3.744719 CGAGGTGAGGGCGTCGAA 61.745 66.667 0.00 0.00 45.86 3.71
3490 7697 3.764160 GAGGGCTTGGATGGCGAGG 62.764 68.421 0.00 0.00 0.00 4.63
3493 7700 4.473520 ACGAGGGCTTGGATGGCG 62.474 66.667 0.00 0.00 0.00 5.69
3497 7704 0.618968 AAGGAGACGAGGGCTTGGAT 60.619 55.000 0.00 0.00 0.00 3.41
3502 7709 1.985116 GTGGAAGGAGACGAGGGCT 60.985 63.158 0.00 0.00 0.00 5.19
3523 7730 4.508128 GAATCTCGTGGGCGGCGA 62.508 66.667 12.98 0.00 38.89 5.54
3533 7740 2.987593 CGGCGACAACGAATCTCG 59.012 61.111 0.00 0.00 46.93 4.04
3555 7762 3.064324 CGGCCTGCCTTCTTTGGG 61.064 66.667 6.60 0.00 0.00 4.12
3581 7788 1.147153 GCTCTGCTGGTGGGGTATC 59.853 63.158 0.00 0.00 0.00 2.24
3584 7791 3.177884 TTGCTCTGCTGGTGGGGT 61.178 61.111 0.00 0.00 0.00 4.95
3591 7798 2.703416 TGACATTAGGTTGCTCTGCTG 58.297 47.619 0.00 0.00 0.00 4.41
3601 7808 1.922447 TCCCTTGGCATGACATTAGGT 59.078 47.619 16.61 0.00 0.00 3.08
3607 7814 1.076549 GGGTTCCCTTGGCATGACA 59.923 57.895 0.00 0.00 0.00 3.58
3612 7819 4.278513 CGGTGGGTTCCCTTGGCA 62.279 66.667 9.43 0.00 0.00 4.92
3631 7838 1.077429 GGGGGTTGGAGAGATGTGC 60.077 63.158 0.00 0.00 0.00 4.57
3633 7840 0.419459 AGAGGGGGTTGGAGAGATGT 59.581 55.000 0.00 0.00 0.00 3.06
3644 7851 0.546988 GGTGAGGTACAAGAGGGGGT 60.547 60.000 0.00 0.00 0.00 4.95
3664 7871 4.666512 TCTACTACGTTTCCCACTAAGGT 58.333 43.478 0.00 0.00 34.66 3.50
3667 7874 6.701400 GTGTTTTCTACTACGTTTCCCACTAA 59.299 38.462 0.00 0.00 0.00 2.24
3699 7906 4.182339 GGGAACTTGATTCGTAGGAGAAC 58.818 47.826 0.00 0.00 38.31 3.01
3709 7916 4.227864 AGTGATCCTGGGAACTTGATTC 57.772 45.455 0.00 0.00 36.48 2.52
3724 7931 6.934056 ACCTCTATGCATCTTCATAGTGATC 58.066 40.000 0.19 0.00 43.84 2.92
3741 7948 7.770662 TGGTAAGGATCAGATCTAACCTCTAT 58.229 38.462 20.66 3.66 0.00 1.98
3744 7951 6.723977 AGATGGTAAGGATCAGATCTAACCTC 59.276 42.308 20.66 16.75 0.00 3.85
3745 7952 6.629156 AGATGGTAAGGATCAGATCTAACCT 58.371 40.000 20.66 1.67 0.00 3.50
3754 7961 2.625314 TGCTCGAGATGGTAAGGATCAG 59.375 50.000 18.75 0.00 0.00 2.90
3776 7983 3.131396 TCTTGACCAACTCTTCTTTCGC 58.869 45.455 0.00 0.00 0.00 4.70
3777 7984 5.084385 GTTCTTGACCAACTCTTCTTTCG 57.916 43.478 0.00 0.00 0.00 3.46
3792 7999 0.179234 TCTGCACCAACGGTTCTTGA 59.821 50.000 0.00 0.00 31.02 3.02
3797 8004 0.893727 GGGAATCTGCACCAACGGTT 60.894 55.000 0.00 0.00 31.02 4.44
3800 8007 3.039202 GCGGGAATCTGCACCAACG 62.039 63.158 0.00 0.00 44.43 4.10
3807 8014 0.179073 TTCTAGCTGCGGGAATCTGC 60.179 55.000 0.00 0.00 45.23 4.26
3834 8041 3.579151 GAGAAACTCTAGTGGTTGGGAGT 59.421 47.826 0.00 0.00 40.24 3.85
3843 8050 4.022242 TCGTTTGAGGGAGAAACTCTAGTG 60.022 45.833 0.00 0.00 35.98 2.74
3844 8051 4.150359 TCGTTTGAGGGAGAAACTCTAGT 58.850 43.478 0.00 0.00 35.98 2.57
3846 8053 4.831155 TCTTCGTTTGAGGGAGAAACTCTA 59.169 41.667 0.00 0.00 35.98 2.43
3860 8067 4.618489 GGTCATGCTTTCAATCTTCGTTTG 59.382 41.667 0.00 0.00 0.00 2.93
3879 8086 1.255667 GCAACCCGGTAGAGAGGTCA 61.256 60.000 0.00 0.00 32.00 4.02
3882 8089 1.218316 GTGCAACCCGGTAGAGAGG 59.782 63.158 0.00 0.00 0.00 3.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.