Multiple sequence alignment - TraesCS7B01G286800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G286800 chr7B 100.000 5088 0 0 1 5088 522148065 522142978 0.000000e+00 9396
1 TraesCS7B01G286800 chr7B 84.211 513 46 16 4601 5087 521149211 521149714 2.770000e-127 466
2 TraesCS7B01G286800 chr7B 84.078 515 47 21 4601 5087 521195824 521196331 9.980000e-127 464
3 TraesCS7B01G286800 chr7B 88.034 117 10 3 349 462 541719029 541718914 8.890000e-28 135
4 TraesCS7B01G286800 chr7B 93.258 89 5 1 365 453 374280256 374280169 4.130000e-26 130
5 TraesCS7B01G286800 chr7A 91.623 4035 196 63 752 4731 559392313 559388366 0.000000e+00 5448
6 TraesCS7B01G286800 chr7A 88.501 487 27 14 4626 5088 559363170 559362689 3.440000e-156 562
7 TraesCS7B01G286800 chr7A 84.600 513 46 17 4601 5087 558108517 558109022 3.560000e-131 479
8 TraesCS7B01G286800 chr7A 92.333 300 21 2 4780 5078 559388364 559388066 4.710000e-115 425
9 TraesCS7B01G286800 chr7A 93.548 93 4 2 369 461 98539630 98539540 2.470000e-28 137
10 TraesCS7B01G286800 chr7A 93.407 91 6 0 369 459 612595672 612595762 8.890000e-28 135
11 TraesCS7B01G286800 chr7D 93.679 2389 102 21 2178 4529 493564493 493562117 0.000000e+00 3530
12 TraesCS7B01G286800 chr7D 90.925 1697 108 14 452 2124 493566165 493564491 0.000000e+00 2239
13 TraesCS7B01G286800 chr7D 88.645 502 37 11 4587 5078 493561956 493561465 1.220000e-165 593
14 TraesCS7B01G286800 chr7D 87.243 486 34 16 4626 5088 493205072 493204592 3.490000e-146 529
15 TraesCS7B01G286800 chr7D 83.431 513 39 17 4601 5087 491871971 491872463 7.820000e-118 435
16 TraesCS7B01G286800 chr7D 87.387 111 8 1 257 367 493566268 493566164 6.920000e-24 122
17 TraesCS7B01G286800 chr3D 91.919 99 7 1 362 459 32010715 32010617 2.470000e-28 137
18 TraesCS7B01G286800 chr6D 92.553 94 7 0 368 461 98111841 98111748 8.890000e-28 135
19 TraesCS7B01G286800 chr5A 89.216 102 9 2 360 460 69085871 69085771 5.350000e-25 126
20 TraesCS7B01G286800 chr2A 90.526 95 9 0 366 460 672113359 672113265 5.350000e-25 126
21 TraesCS7B01G286800 chr5B 87.850 107 10 3 359 463 543227121 543227226 6.920000e-24 122


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G286800 chr7B 522142978 522148065 5087 True 9396.0 9396 100.000 1 5088 1 chr7B.!!$R2 5087
1 TraesCS7B01G286800 chr7B 521149211 521149714 503 False 466.0 466 84.211 4601 5087 1 chr7B.!!$F1 486
2 TraesCS7B01G286800 chr7B 521195824 521196331 507 False 464.0 464 84.078 4601 5087 1 chr7B.!!$F2 486
3 TraesCS7B01G286800 chr7A 559388066 559392313 4247 True 2936.5 5448 91.978 752 5078 2 chr7A.!!$R3 4326
4 TraesCS7B01G286800 chr7A 558108517 558109022 505 False 479.0 479 84.600 4601 5087 1 chr7A.!!$F1 486
5 TraesCS7B01G286800 chr7D 493561465 493566268 4803 True 1621.0 3530 90.159 257 5078 4 chr7D.!!$R2 4821

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
37 38 0.743345 GCCAACTCGGGCGTTAGATT 60.743 55.0 0.00 0.00 45.40 2.40 F
154 155 0.885879 CGGCTTAAACCAAACCCTCC 59.114 55.0 0.00 0.00 0.00 4.30 F
1146 1183 0.338120 AGGGCTGCCTCTTCTACTCT 59.662 55.0 19.68 0.12 0.00 3.24 F
1493 1531 0.405585 ATTCCCACACACCAGGAAGG 59.594 55.0 0.00 0.00 42.71 3.46 F
2073 2121 2.287788 CCACACAAGGACAATTGAGTGC 60.288 50.0 13.59 0.00 45.02 4.40 F
2947 3009 0.036732 ATGTCTGGCGTGTTCATGGT 59.963 50.0 0.00 0.00 0.00 3.55 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1146 1183 0.250295 CTTTGGACCTGAGCACCGAA 60.250 55.000 0.00 0.00 0.00 4.30 R
2032 2078 0.321564 TTCCCAGAACATCAGGCACG 60.322 55.000 0.00 0.00 0.00 5.34 R
2038 2084 1.492599 TGTGTGGTTCCCAGAACATCA 59.507 47.619 9.50 5.13 32.34 3.07 R
2572 2633 1.757682 TGAAGTTGGAAAGGTTGCGT 58.242 45.000 0.00 0.00 0.00 5.24 R
3092 3155 1.896220 TACTGGCCAAGCAGTTTCAG 58.104 50.000 7.01 0.00 33.26 3.02 R
4769 4989 0.244994 CTGAAGTCTCCACTGACCGG 59.755 60.000 0.00 0.00 37.66 5.28 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 5.613358 AAAGAAGACTATTTGCCAACTCG 57.387 39.130 0.00 0.00 0.00 4.18
27 28 3.600388 AGAAGACTATTTGCCAACTCGG 58.400 45.455 0.00 0.00 38.11 4.63
28 29 2.403252 AGACTATTTGCCAACTCGGG 57.597 50.000 0.00 0.00 34.06 5.14
35 36 2.263540 GCCAACTCGGGCGTTAGA 59.736 61.111 0.00 0.00 45.40 2.10
36 37 1.153429 GCCAACTCGGGCGTTAGAT 60.153 57.895 0.00 0.00 45.40 1.98
37 38 0.743345 GCCAACTCGGGCGTTAGATT 60.743 55.000 0.00 0.00 45.40 2.40
38 39 1.734163 CCAACTCGGGCGTTAGATTT 58.266 50.000 0.00 0.00 0.00 2.17
39 40 1.396996 CCAACTCGGGCGTTAGATTTG 59.603 52.381 0.00 0.00 0.00 2.32
40 41 1.084289 AACTCGGGCGTTAGATTTGC 58.916 50.000 0.00 0.00 0.00 3.68
47 48 2.566952 GCGTTAGATTTGCCATGCTT 57.433 45.000 0.00 0.00 0.00 3.91
48 49 3.691049 GCGTTAGATTTGCCATGCTTA 57.309 42.857 0.00 0.00 0.00 3.09
49 50 4.027572 GCGTTAGATTTGCCATGCTTAA 57.972 40.909 0.00 0.00 0.00 1.85
50 51 4.420168 GCGTTAGATTTGCCATGCTTAAA 58.580 39.130 0.00 0.00 0.00 1.52
51 52 5.043248 GCGTTAGATTTGCCATGCTTAAAT 58.957 37.500 0.00 0.00 0.00 1.40
52 53 6.205784 GCGTTAGATTTGCCATGCTTAAATA 58.794 36.000 0.00 0.00 0.00 1.40
53 54 6.863126 GCGTTAGATTTGCCATGCTTAAATAT 59.137 34.615 0.00 0.00 0.00 1.28
54 55 7.382218 GCGTTAGATTTGCCATGCTTAAATATT 59.618 33.333 0.00 0.00 0.00 1.28
55 56 9.248291 CGTTAGATTTGCCATGCTTAAATATTT 57.752 29.630 5.89 5.89 0.00 1.40
58 59 8.652810 AGATTTGCCATGCTTAAATATTTGAC 57.347 30.769 11.05 1.03 0.00 3.18
59 60 6.884096 TTTGCCATGCTTAAATATTTGACG 57.116 33.333 11.05 0.60 0.00 4.35
60 61 5.574891 TGCCATGCTTAAATATTTGACGT 57.425 34.783 11.05 0.00 0.00 4.34
61 62 5.960113 TGCCATGCTTAAATATTTGACGTT 58.040 33.333 11.05 0.00 0.00 3.99
62 63 7.089770 TGCCATGCTTAAATATTTGACGTTA 57.910 32.000 11.05 0.00 0.00 3.18
63 64 7.539436 TGCCATGCTTAAATATTTGACGTTAA 58.461 30.769 11.05 0.00 0.00 2.01
64 65 8.029522 TGCCATGCTTAAATATTTGACGTTAAA 58.970 29.630 11.05 8.03 0.00 1.52
65 66 8.865001 GCCATGCTTAAATATTTGACGTTAAAA 58.135 29.630 9.72 4.77 0.00 1.52
78 79 9.990360 ATTTGACGTTAAAATTAGGGATTGTTT 57.010 25.926 9.72 0.00 0.00 2.83
79 80 8.804688 TTGACGTTAAAATTAGGGATTGTTTG 57.195 30.769 0.00 0.00 0.00 2.93
80 81 7.371936 TGACGTTAAAATTAGGGATTGTTTGG 58.628 34.615 0.00 0.00 0.00 3.28
81 82 7.014422 TGACGTTAAAATTAGGGATTGTTTGGT 59.986 33.333 0.00 0.00 0.00 3.67
82 83 7.728148 ACGTTAAAATTAGGGATTGTTTGGTT 58.272 30.769 0.00 0.00 0.00 3.67
83 84 7.868922 ACGTTAAAATTAGGGATTGTTTGGTTC 59.131 33.333 0.00 0.00 0.00 3.62
84 85 8.085909 CGTTAAAATTAGGGATTGTTTGGTTCT 58.914 33.333 0.00 0.00 0.00 3.01
87 88 7.718334 AAATTAGGGATTGTTTGGTTCTAGG 57.282 36.000 0.00 0.00 0.00 3.02
88 89 3.087370 AGGGATTGTTTGGTTCTAGGC 57.913 47.619 0.00 0.00 0.00 3.93
89 90 2.100197 GGGATTGTTTGGTTCTAGGCC 58.900 52.381 0.00 0.00 0.00 5.19
90 91 2.291605 GGGATTGTTTGGTTCTAGGCCT 60.292 50.000 11.78 11.78 0.00 5.19
91 92 3.431415 GGATTGTTTGGTTCTAGGCCTT 58.569 45.455 12.58 0.00 0.00 4.35
92 93 3.444034 GGATTGTTTGGTTCTAGGCCTTC 59.556 47.826 12.58 0.00 0.00 3.46
93 94 3.586470 TTGTTTGGTTCTAGGCCTTCA 57.414 42.857 12.58 0.00 0.00 3.02
94 95 3.586470 TGTTTGGTTCTAGGCCTTCAA 57.414 42.857 12.58 0.07 0.00 2.69
95 96 4.112634 TGTTTGGTTCTAGGCCTTCAAT 57.887 40.909 12.58 0.00 0.00 2.57
96 97 5.249780 TGTTTGGTTCTAGGCCTTCAATA 57.750 39.130 12.58 0.00 0.00 1.90
97 98 5.007682 TGTTTGGTTCTAGGCCTTCAATAC 58.992 41.667 12.58 2.39 0.00 1.89
98 99 3.926058 TGGTTCTAGGCCTTCAATACC 57.074 47.619 12.58 12.63 0.00 2.73
99 100 3.186283 TGGTTCTAGGCCTTCAATACCA 58.814 45.455 12.58 15.18 32.38 3.25
100 101 3.054655 TGGTTCTAGGCCTTCAATACCAC 60.055 47.826 12.58 0.00 30.00 4.16
101 102 3.054655 GGTTCTAGGCCTTCAATACCACA 60.055 47.826 12.58 0.00 0.00 4.17
102 103 3.906720 TCTAGGCCTTCAATACCACAC 57.093 47.619 12.58 0.00 0.00 3.82
103 104 3.450904 TCTAGGCCTTCAATACCACACT 58.549 45.455 12.58 0.00 0.00 3.55
104 105 3.844211 TCTAGGCCTTCAATACCACACTT 59.156 43.478 12.58 0.00 0.00 3.16
105 106 3.525800 AGGCCTTCAATACCACACTTT 57.474 42.857 0.00 0.00 0.00 2.66
106 107 3.157087 AGGCCTTCAATACCACACTTTG 58.843 45.455 0.00 0.00 0.00 2.77
107 108 2.352715 GGCCTTCAATACCACACTTTGC 60.353 50.000 0.00 0.00 0.00 3.68
108 109 2.352715 GCCTTCAATACCACACTTTGCC 60.353 50.000 0.00 0.00 0.00 4.52
109 110 2.890311 CCTTCAATACCACACTTTGCCA 59.110 45.455 0.00 0.00 0.00 4.92
110 111 3.305335 CCTTCAATACCACACTTTGCCAC 60.305 47.826 0.00 0.00 0.00 5.01
111 112 2.937519 TCAATACCACACTTTGCCACA 58.062 42.857 0.00 0.00 0.00 4.17
112 113 3.495331 TCAATACCACACTTTGCCACAT 58.505 40.909 0.00 0.00 0.00 3.21
113 114 3.894427 TCAATACCACACTTTGCCACATT 59.106 39.130 0.00 0.00 0.00 2.71
114 115 4.343526 TCAATACCACACTTTGCCACATTT 59.656 37.500 0.00 0.00 0.00 2.32
115 116 4.953940 ATACCACACTTTGCCACATTTT 57.046 36.364 0.00 0.00 0.00 1.82
116 117 3.625649 ACCACACTTTGCCACATTTTT 57.374 38.095 0.00 0.00 0.00 1.94
137 138 4.571372 TTTTTACCAAGTTTGCCTACGG 57.429 40.909 0.00 0.00 0.00 4.02
149 150 2.624316 GCCTACGGCTTAAACCAAAC 57.376 50.000 0.00 0.00 46.69 2.93
150 151 1.200716 GCCTACGGCTTAAACCAAACC 59.799 52.381 0.00 0.00 46.69 3.27
151 152 1.814394 CCTACGGCTTAAACCAAACCC 59.186 52.381 0.00 0.00 0.00 4.11
152 153 2.553685 CCTACGGCTTAAACCAAACCCT 60.554 50.000 0.00 0.00 0.00 4.34
153 154 1.612676 ACGGCTTAAACCAAACCCTC 58.387 50.000 0.00 0.00 0.00 4.30
154 155 0.885879 CGGCTTAAACCAAACCCTCC 59.114 55.000 0.00 0.00 0.00 4.30
155 156 1.546998 CGGCTTAAACCAAACCCTCCT 60.547 52.381 0.00 0.00 0.00 3.69
156 157 2.290450 CGGCTTAAACCAAACCCTCCTA 60.290 50.000 0.00 0.00 0.00 2.94
157 158 3.770046 GGCTTAAACCAAACCCTCCTAA 58.230 45.455 0.00 0.00 0.00 2.69
158 159 4.154176 GGCTTAAACCAAACCCTCCTAAA 58.846 43.478 0.00 0.00 0.00 1.85
159 160 4.589798 GGCTTAAACCAAACCCTCCTAAAA 59.410 41.667 0.00 0.00 0.00 1.52
160 161 5.247564 GGCTTAAACCAAACCCTCCTAAAAT 59.752 40.000 0.00 0.00 0.00 1.82
161 162 6.163476 GCTTAAACCAAACCCTCCTAAAATG 58.837 40.000 0.00 0.00 0.00 2.32
162 163 6.673839 TTAAACCAAACCCTCCTAAAATGG 57.326 37.500 0.00 0.00 0.00 3.16
163 164 3.915346 ACCAAACCCTCCTAAAATGGT 57.085 42.857 0.00 0.00 34.98 3.55
164 165 3.506398 ACCAAACCCTCCTAAAATGGTG 58.494 45.455 0.00 0.00 38.22 4.17
165 166 3.141272 ACCAAACCCTCCTAAAATGGTGA 59.859 43.478 0.00 0.00 38.22 4.02
166 167 3.763897 CCAAACCCTCCTAAAATGGTGAG 59.236 47.826 0.00 0.00 0.00 3.51
167 168 4.508405 CCAAACCCTCCTAAAATGGTGAGA 60.508 45.833 0.00 0.00 0.00 3.27
168 169 4.302559 AACCCTCCTAAAATGGTGAGAC 57.697 45.455 0.00 0.00 0.00 3.36
169 170 3.532102 ACCCTCCTAAAATGGTGAGACT 58.468 45.455 0.00 0.00 0.00 3.24
170 171 3.916989 ACCCTCCTAAAATGGTGAGACTT 59.083 43.478 0.00 0.00 0.00 3.01
171 172 4.263506 ACCCTCCTAAAATGGTGAGACTTG 60.264 45.833 0.00 0.00 0.00 3.16
172 173 3.691609 CCTCCTAAAATGGTGAGACTTGC 59.308 47.826 0.00 0.00 0.00 4.01
173 174 3.686016 TCCTAAAATGGTGAGACTTGCC 58.314 45.455 0.00 0.00 0.00 4.52
174 175 3.330701 TCCTAAAATGGTGAGACTTGCCT 59.669 43.478 0.00 0.00 0.00 4.75
175 176 4.534500 TCCTAAAATGGTGAGACTTGCCTA 59.466 41.667 0.00 0.00 0.00 3.93
176 177 5.013704 TCCTAAAATGGTGAGACTTGCCTAA 59.986 40.000 0.00 0.00 0.00 2.69
177 178 5.123979 CCTAAAATGGTGAGACTTGCCTAAC 59.876 44.000 0.00 0.00 0.00 2.34
178 179 2.789409 ATGGTGAGACTTGCCTAACC 57.211 50.000 0.00 0.00 38.05 2.85
179 180 1.729586 TGGTGAGACTTGCCTAACCT 58.270 50.000 0.00 0.00 38.33 3.50
180 181 2.054799 TGGTGAGACTTGCCTAACCTT 58.945 47.619 0.00 0.00 38.33 3.50
181 182 3.244582 TGGTGAGACTTGCCTAACCTTA 58.755 45.455 0.00 0.00 38.33 2.69
182 183 3.260884 TGGTGAGACTTGCCTAACCTTAG 59.739 47.826 0.00 0.00 38.33 2.18
203 204 3.702330 GGTGTCAACCTTAAGCACAAAC 58.298 45.455 10.92 1.12 43.84 2.93
204 205 3.490249 GGTGTCAACCTTAAGCACAAACC 60.490 47.826 10.92 4.74 43.84 3.27
205 206 3.129638 GTGTCAACCTTAAGCACAAACCA 59.870 43.478 0.00 0.00 0.00 3.67
206 207 3.764434 TGTCAACCTTAAGCACAAACCAA 59.236 39.130 0.00 0.00 0.00 3.67
207 208 4.220821 TGTCAACCTTAAGCACAAACCAAA 59.779 37.500 0.00 0.00 0.00 3.28
208 209 4.565166 GTCAACCTTAAGCACAAACCAAAC 59.435 41.667 0.00 0.00 0.00 2.93
209 210 4.220821 TCAACCTTAAGCACAAACCAAACA 59.779 37.500 0.00 0.00 0.00 2.83
210 211 4.118093 ACCTTAAGCACAAACCAAACAC 57.882 40.909 0.00 0.00 0.00 3.32
211 212 3.118920 ACCTTAAGCACAAACCAAACACC 60.119 43.478 0.00 0.00 0.00 4.16
212 213 3.132111 CCTTAAGCACAAACCAAACACCT 59.868 43.478 0.00 0.00 0.00 4.00
213 214 4.382577 CCTTAAGCACAAACCAAACACCTT 60.383 41.667 0.00 0.00 0.00 3.50
214 215 3.694043 AAGCACAAACCAAACACCTTT 57.306 38.095 0.00 0.00 0.00 3.11
215 216 4.810191 AAGCACAAACCAAACACCTTTA 57.190 36.364 0.00 0.00 0.00 1.85
216 217 5.351948 AAGCACAAACCAAACACCTTTAT 57.648 34.783 0.00 0.00 0.00 1.40
217 218 6.472686 AAGCACAAACCAAACACCTTTATA 57.527 33.333 0.00 0.00 0.00 0.98
218 219 6.084326 AGCACAAACCAAACACCTTTATAG 57.916 37.500 0.00 0.00 0.00 1.31
219 220 4.684242 GCACAAACCAAACACCTTTATAGC 59.316 41.667 0.00 0.00 0.00 2.97
220 221 4.915085 CACAAACCAAACACCTTTATAGCG 59.085 41.667 0.00 0.00 0.00 4.26
221 222 4.822896 ACAAACCAAACACCTTTATAGCGA 59.177 37.500 0.00 0.00 0.00 4.93
222 223 5.299782 ACAAACCAAACACCTTTATAGCGAA 59.700 36.000 0.00 0.00 0.00 4.70
223 224 6.183360 ACAAACCAAACACCTTTATAGCGAAA 60.183 34.615 0.00 0.00 0.00 3.46
224 225 6.584185 AACCAAACACCTTTATAGCGAAAT 57.416 33.333 0.00 0.00 0.00 2.17
225 226 6.584185 ACCAAACACCTTTATAGCGAAATT 57.416 33.333 0.00 0.00 0.00 1.82
226 227 6.988522 ACCAAACACCTTTATAGCGAAATTT 58.011 32.000 0.00 0.00 0.00 1.82
227 228 7.438564 ACCAAACACCTTTATAGCGAAATTTT 58.561 30.769 0.00 0.00 0.00 1.82
228 229 7.597369 ACCAAACACCTTTATAGCGAAATTTTC 59.403 33.333 0.00 0.00 0.00 2.29
229 230 7.596995 CCAAACACCTTTATAGCGAAATTTTCA 59.403 33.333 9.66 0.00 0.00 2.69
230 231 8.973378 CAAACACCTTTATAGCGAAATTTTCAA 58.027 29.630 9.66 0.00 0.00 2.69
231 232 8.742554 AACACCTTTATAGCGAAATTTTCAAG 57.257 30.769 9.66 4.34 0.00 3.02
232 233 8.106247 ACACCTTTATAGCGAAATTTTCAAGA 57.894 30.769 9.66 0.00 0.00 3.02
233 234 8.573035 ACACCTTTATAGCGAAATTTTCAAGAA 58.427 29.630 9.66 0.00 0.00 2.52
234 235 8.850452 CACCTTTATAGCGAAATTTTCAAGAAC 58.150 33.333 9.66 0.00 0.00 3.01
235 236 8.573035 ACCTTTATAGCGAAATTTTCAAGAACA 58.427 29.630 9.66 0.00 0.00 3.18
236 237 9.405587 CCTTTATAGCGAAATTTTCAAGAACAA 57.594 29.630 9.66 0.00 0.00 2.83
283 284 1.235724 GGTAGTGCAACCAAGTGACC 58.764 55.000 2.53 0.00 39.50 4.02
295 296 6.611381 CAACCAAGTGACCTAAATGTGTATG 58.389 40.000 0.00 0.00 0.00 2.39
296 297 4.700213 ACCAAGTGACCTAAATGTGTATGC 59.300 41.667 0.00 0.00 0.00 3.14
297 298 4.943705 CCAAGTGACCTAAATGTGTATGCT 59.056 41.667 0.00 0.00 0.00 3.79
298 299 6.112734 CCAAGTGACCTAAATGTGTATGCTA 58.887 40.000 0.00 0.00 0.00 3.49
299 300 6.037172 CCAAGTGACCTAAATGTGTATGCTAC 59.963 42.308 0.00 0.00 0.00 3.58
300 301 6.546428 AGTGACCTAAATGTGTATGCTACT 57.454 37.500 0.00 0.00 0.00 2.57
310 311 4.290093 TGTGTATGCTACTCCCTTCAGAT 58.710 43.478 0.00 0.00 0.00 2.90
362 363 8.780846 TTTAGGTCGCTGATTTTGACTAATTA 57.219 30.769 0.00 0.00 33.21 1.40
367 368 9.434559 GGTCGCTGATTTTGACTAATTAAATAC 57.565 33.333 0.00 0.00 33.21 1.89
379 380 9.710818 TGACTAATTAAATACTACTCCCTCTGT 57.289 33.333 0.00 0.00 0.00 3.41
381 382 9.939424 ACTAATTAAATACTACTCCCTCTGTCT 57.061 33.333 0.00 0.00 0.00 3.41
383 384 8.840200 AATTAAATACTACTCCCTCTGTCTCA 57.160 34.615 0.00 0.00 0.00 3.27
384 385 8.840200 ATTAAATACTACTCCCTCTGTCTCAA 57.160 34.615 0.00 0.00 0.00 3.02
385 386 8.660295 TTAAATACTACTCCCTCTGTCTCAAA 57.340 34.615 0.00 0.00 0.00 2.69
386 387 7.554959 AAATACTACTCCCTCTGTCTCAAAA 57.445 36.000 0.00 0.00 0.00 2.44
387 388 7.741554 AATACTACTCCCTCTGTCTCAAAAT 57.258 36.000 0.00 0.00 0.00 1.82
388 389 8.840200 AATACTACTCCCTCTGTCTCAAAATA 57.160 34.615 0.00 0.00 0.00 1.40
389 390 9.440761 AATACTACTCCCTCTGTCTCAAAATAT 57.559 33.333 0.00 0.00 0.00 1.28
391 392 8.840200 ACTACTCCCTCTGTCTCAAAATATAA 57.160 34.615 0.00 0.00 0.00 0.98
392 393 8.919145 ACTACTCCCTCTGTCTCAAAATATAAG 58.081 37.037 0.00 0.00 0.00 1.73
393 394 7.979786 ACTCCCTCTGTCTCAAAATATAAGA 57.020 36.000 0.00 0.00 0.00 2.10
394 395 8.380742 ACTCCCTCTGTCTCAAAATATAAGAA 57.619 34.615 0.00 0.00 0.00 2.52
395 396 8.261522 ACTCCCTCTGTCTCAAAATATAAGAAC 58.738 37.037 0.00 0.00 0.00 3.01
396 397 7.265673 TCCCTCTGTCTCAAAATATAAGAACG 58.734 38.462 0.00 0.00 0.00 3.95
397 398 7.042335 CCCTCTGTCTCAAAATATAAGAACGT 58.958 38.462 0.00 0.00 0.00 3.99
398 399 7.549488 CCCTCTGTCTCAAAATATAAGAACGTT 59.451 37.037 0.00 0.00 0.00 3.99
399 400 8.936864 CCTCTGTCTCAAAATATAAGAACGTTT 58.063 33.333 0.46 0.00 0.00 3.60
414 415 7.908193 AAGAACGTTTTTAACATTGCACTAG 57.092 32.000 0.46 0.00 0.00 2.57
415 416 7.023197 AGAACGTTTTTAACATTGCACTAGT 57.977 32.000 0.46 0.00 0.00 2.57
416 417 6.910433 AGAACGTTTTTAACATTGCACTAGTG 59.090 34.615 18.93 18.93 0.00 2.74
417 418 6.126568 ACGTTTTTAACATTGCACTAGTGT 57.873 33.333 23.44 5.73 0.00 3.55
418 419 6.196571 ACGTTTTTAACATTGCACTAGTGTC 58.803 36.000 23.44 15.87 0.00 3.67
419 420 6.183360 ACGTTTTTAACATTGCACTAGTGTCA 60.183 34.615 23.44 18.10 0.00 3.58
420 421 6.689241 CGTTTTTAACATTGCACTAGTGTCAA 59.311 34.615 24.85 24.85 33.59 3.18
421 422 7.219154 CGTTTTTAACATTGCACTAGTGTCAAA 59.781 33.333 25.78 18.16 33.11 2.69
422 423 8.865001 GTTTTTAACATTGCACTAGTGTCAAAA 58.135 29.630 25.78 17.20 33.11 2.44
423 424 8.988064 TTTTAACATTGCACTAGTGTCAAAAA 57.012 26.923 25.78 20.30 27.12 1.94
424 425 7.979115 TTAACATTGCACTAGTGTCAAAAAC 57.021 32.000 25.78 10.79 33.11 2.43
425 426 4.597079 ACATTGCACTAGTGTCAAAAACG 58.403 39.130 25.78 19.10 33.11 3.60
426 427 4.095782 ACATTGCACTAGTGTCAAAAACGT 59.904 37.500 25.78 19.51 33.11 3.99
427 428 4.688511 TTGCACTAGTGTCAAAAACGTT 57.311 36.364 23.44 0.00 0.00 3.99
428 429 4.688511 TGCACTAGTGTCAAAAACGTTT 57.311 36.364 23.44 7.96 0.00 3.60
429 430 5.049398 TGCACTAGTGTCAAAAACGTTTT 57.951 34.783 23.44 20.26 0.00 2.43
430 431 5.462405 TGCACTAGTGTCAAAAACGTTTTT 58.538 33.333 28.62 28.62 40.75 1.94
431 432 6.609533 TGCACTAGTGTCAAAAACGTTTTTA 58.390 32.000 32.12 18.43 38.23 1.52
432 433 7.251994 TGCACTAGTGTCAAAAACGTTTTTAT 58.748 30.769 32.12 19.76 38.23 1.40
433 434 8.396390 TGCACTAGTGTCAAAAACGTTTTTATA 58.604 29.630 32.12 22.38 38.23 0.98
434 435 9.389570 GCACTAGTGTCAAAAACGTTTTTATAT 57.610 29.630 32.12 20.32 38.23 0.86
443 444 9.857957 TCAAAAACGTTTTTATATTATGGGACC 57.142 29.630 32.12 0.00 38.23 4.46
444 445 8.800031 CAAAAACGTTTTTATATTATGGGACCG 58.200 33.333 32.12 15.00 38.23 4.79
445 446 7.862512 AAACGTTTTTATATTATGGGACCGA 57.137 32.000 7.96 0.00 0.00 4.69
446 447 7.486802 AACGTTTTTATATTATGGGACCGAG 57.513 36.000 0.00 0.00 0.00 4.63
447 448 5.993441 ACGTTTTTATATTATGGGACCGAGG 59.007 40.000 0.00 0.00 0.00 4.63
448 449 5.410439 CGTTTTTATATTATGGGACCGAGGG 59.590 44.000 0.00 0.00 0.00 4.30
449 450 6.536447 GTTTTTATATTATGGGACCGAGGGA 58.464 40.000 0.00 0.00 0.00 4.20
450 451 6.368779 TTTTATATTATGGGACCGAGGGAG 57.631 41.667 0.00 0.00 0.00 4.30
451 452 3.562108 ATATTATGGGACCGAGGGAGT 57.438 47.619 0.00 0.00 0.00 3.85
452 453 4.687262 ATATTATGGGACCGAGGGAGTA 57.313 45.455 0.00 0.00 0.00 2.59
462 463 6.134754 GGGACCGAGGGAGTATATGTTATAT 58.865 44.000 0.00 0.00 0.00 0.86
467 468 6.273825 CGAGGGAGTATATGTTATATGCCAC 58.726 44.000 0.00 0.00 0.00 5.01
473 474 8.512138 GGAGTATATGTTATATGCCACCAAAAC 58.488 37.037 0.00 0.00 0.00 2.43
528 529 9.695526 GAATATAATGATGTGCTTTTTATGCCA 57.304 29.630 0.00 0.00 0.00 4.92
530 531 3.235157 TGATGTGCTTTTTATGCCAGC 57.765 42.857 0.00 0.00 0.00 4.85
531 532 2.561858 TGATGTGCTTTTTATGCCAGCA 59.438 40.909 0.00 0.00 41.30 4.41
532 533 3.196039 TGATGTGCTTTTTATGCCAGCAT 59.804 39.130 10.44 10.44 45.09 3.79
533 534 4.401837 TGATGTGCTTTTTATGCCAGCATA 59.598 37.500 8.25 8.25 45.09 3.14
534 535 4.108699 TGTGCTTTTTATGCCAGCATAC 57.891 40.909 11.78 2.54 45.09 2.39
535 536 3.108144 GTGCTTTTTATGCCAGCATACG 58.892 45.455 11.78 3.18 45.09 3.06
538 539 3.004734 GCTTTTTATGCCAGCATACGGAT 59.995 43.478 11.78 0.00 38.48 4.18
539 540 4.539870 CTTTTTATGCCAGCATACGGATG 58.460 43.478 11.78 2.22 38.48 3.51
587 589 7.623268 AGAAACTTTGTTTGAATACGAATGC 57.377 32.000 0.10 0.00 0.00 3.56
700 707 7.016170 ACAAAATGTAAGACCTTTTTATGGCCT 59.984 33.333 3.32 0.00 0.00 5.19
701 708 8.527810 CAAAATGTAAGACCTTTTTATGGCCTA 58.472 33.333 3.32 0.00 0.00 3.93
708 715 6.006449 AGACCTTTTTATGGCCTATATGCAG 58.994 40.000 3.32 0.00 0.00 4.41
712 719 8.170061 ACCTTTTTATGGCCTATATGCAGAATA 58.830 33.333 3.32 0.00 0.00 1.75
781 792 6.126652 ACAGACTTGGGATAGAAGCAATATGT 60.127 38.462 0.00 0.00 0.00 2.29
786 797 7.721399 ACTTGGGATAGAAGCAATATGTAAAGG 59.279 37.037 0.00 0.00 0.00 3.11
787 798 6.542821 TGGGATAGAAGCAATATGTAAAGGG 58.457 40.000 0.00 0.00 0.00 3.95
788 799 6.331572 TGGGATAGAAGCAATATGTAAAGGGA 59.668 38.462 0.00 0.00 0.00 4.20
789 800 6.881602 GGGATAGAAGCAATATGTAAAGGGAG 59.118 42.308 0.00 0.00 0.00 4.30
799 812 9.120538 GCAATATGTAAAGGGAGTATCTGAAAA 57.879 33.333 0.00 0.00 33.73 2.29
830 856 6.479884 AGTGCTCCAAATTCTTGATAAGACT 58.520 36.000 0.00 0.00 37.23 3.24
831 857 6.373774 AGTGCTCCAAATTCTTGATAAGACTG 59.626 38.462 0.00 0.00 37.23 3.51
832 858 5.124457 TGCTCCAAATTCTTGATAAGACTGC 59.876 40.000 0.00 0.00 37.23 4.40
833 859 5.124457 GCTCCAAATTCTTGATAAGACTGCA 59.876 40.000 0.00 0.00 37.23 4.41
834 860 6.183360 GCTCCAAATTCTTGATAAGACTGCAT 60.183 38.462 0.00 0.00 37.23 3.96
835 861 7.630082 GCTCCAAATTCTTGATAAGACTGCATT 60.630 37.037 0.00 0.00 37.23 3.56
836 862 7.765307 TCCAAATTCTTGATAAGACTGCATTC 58.235 34.615 0.00 0.00 37.23 2.67
837 863 7.613022 TCCAAATTCTTGATAAGACTGCATTCT 59.387 33.333 0.00 0.00 37.23 2.40
838 864 7.701078 CCAAATTCTTGATAAGACTGCATTCTG 59.299 37.037 7.42 0.00 37.23 3.02
839 865 6.939132 ATTCTTGATAAGACTGCATTCTGG 57.061 37.500 7.42 0.00 37.23 3.86
840 866 4.194640 TCTTGATAAGACTGCATTCTGGC 58.805 43.478 7.42 1.28 31.20 4.85
841 867 2.554142 TGATAAGACTGCATTCTGGCG 58.446 47.619 7.42 0.00 36.28 5.69
842 868 2.168313 TGATAAGACTGCATTCTGGCGA 59.832 45.455 7.42 0.00 36.28 5.54
843 869 2.010145 TAAGACTGCATTCTGGCGAC 57.990 50.000 7.42 0.00 36.28 5.19
860 886 2.307049 CGACTGCACAAAACGAAATCC 58.693 47.619 0.00 0.00 0.00 3.01
972 1000 2.103042 GGCACAGATCACCACTCGC 61.103 63.158 0.00 0.00 0.00 5.03
1014 1042 4.664677 GATATGGAGCGCGCCGGT 62.665 66.667 30.33 18.30 41.33 5.28
1122 1159 1.539124 GGTGGTGAAGGGGAGGTCT 60.539 63.158 0.00 0.00 0.00 3.85
1146 1183 0.338120 AGGGCTGCCTCTTCTACTCT 59.662 55.000 19.68 0.12 0.00 3.24
1217 1254 1.001393 GCATCCCCCAAGGTCGAAA 60.001 57.895 0.00 0.00 36.75 3.46
1277 1314 1.310933 CCTCGATTGCCTGCTGCTTT 61.311 55.000 0.00 0.00 42.00 3.51
1286 1323 1.538047 CCTGCTGCTTTGCTTTAGGA 58.462 50.000 0.00 0.00 0.00 2.94
1331 1368 5.104485 CCCTGTTCCTAGTTAAGCCATTAGT 60.104 44.000 0.00 0.00 0.00 2.24
1378 1415 3.965539 CTGGGCTCCCTGTTCTGCG 62.966 68.421 6.50 0.00 36.94 5.18
1441 1479 3.624777 CATGGGGATGCATAGGGATTAC 58.375 50.000 0.00 0.00 0.00 1.89
1493 1531 0.405585 ATTCCCACACACCAGGAAGG 59.594 55.000 0.00 0.00 42.71 3.46
1525 1563 3.490439 TTGCAACTCATGTCTTCAGGA 57.510 42.857 0.00 0.00 33.30 3.86
1586 1624 8.718102 TTATCTGGAAACTAAGCTGTATTGTC 57.282 34.615 0.00 0.00 0.00 3.18
1591 1629 2.618053 ACTAAGCTGTATTGTCGCACC 58.382 47.619 0.00 0.00 0.00 5.01
1662 1700 2.823154 ACCGTACAATGGGAAAACATGG 59.177 45.455 0.00 0.00 0.00 3.66
1665 1703 4.021894 CCGTACAATGGGAAAACATGGAAA 60.022 41.667 0.00 0.00 0.00 3.13
1670 1708 2.888212 TGGGAAAACATGGAAAGGGAG 58.112 47.619 0.00 0.00 0.00 4.30
1674 1712 4.089361 GGAAAACATGGAAAGGGAGACAT 58.911 43.478 0.00 0.00 0.00 3.06
1722 1760 3.474570 CGCCCCTCCTCCCAGAAG 61.475 72.222 0.00 0.00 0.00 2.85
1739 1777 4.083802 CCAGAAGAAGACAATTGGACGAAC 60.084 45.833 10.83 0.00 0.00 3.95
1759 1797 2.578021 ACACAAATCCTAGCACCATCCT 59.422 45.455 0.00 0.00 0.00 3.24
1797 1835 5.069914 AGTTATTACATCCCATACTGACGCA 59.930 40.000 0.00 0.00 0.00 5.24
1804 1842 4.415881 TCCCATACTGACGCATAACATT 57.584 40.909 0.00 0.00 0.00 2.71
1805 1843 4.126437 TCCCATACTGACGCATAACATTG 58.874 43.478 0.00 0.00 0.00 2.82
1880 1918 2.827921 CCCAGGAAGCTTGCTGTAAAAT 59.172 45.455 36.27 7.46 44.06 1.82
1903 1941 8.894768 AATTATTCTCTACTACTGCCATTGAC 57.105 34.615 0.00 0.00 0.00 3.18
1909 1947 6.095580 TCTCTACTACTGCCATTGACTGTTAG 59.904 42.308 0.00 0.00 0.00 2.34
1968 2006 2.827800 TGTTGACTCTTCAGAGCAGG 57.172 50.000 3.58 0.00 45.79 4.85
1994 2032 5.886960 AGAAAGTCACTGCATTTATGTCC 57.113 39.130 0.00 0.00 0.00 4.02
2015 2061 6.323996 TGTCCTTACGTATCAGATTCTGGATT 59.676 38.462 13.59 2.50 31.51 3.01
2038 2084 4.530710 TCTGTTGAGTTTATACGTGCCT 57.469 40.909 0.00 0.00 0.00 4.75
2073 2121 2.287788 CCACACAAGGACAATTGAGTGC 60.288 50.000 13.59 0.00 45.02 4.40
2077 2125 2.559668 ACAAGGACAATTGAGTGCATGG 59.440 45.455 13.59 0.00 33.67 3.66
2087 2135 2.481441 TGAGTGCATGGGATTAGGTCT 58.519 47.619 0.00 0.00 0.00 3.85
2115 2163 3.930336 TGTGACTGCAAAGATGACTAGG 58.070 45.455 0.00 0.00 0.00 3.02
2133 2181 7.946207 TGACTAGGAGCAGATACTTTATTCAG 58.054 38.462 0.00 0.00 0.00 3.02
2167 2215 4.220821 ACATAGTATTAGGTCAGGGCATCG 59.779 45.833 0.00 0.00 0.00 3.84
2683 2744 1.068434 GCAGAGCTCCCTATCTGTGTC 59.932 57.143 10.93 0.00 43.94 3.67
2863 2925 4.163078 AGCAGGCATAGTCTATGACAGTTT 59.837 41.667 24.69 9.26 46.85 2.66
2947 3009 0.036732 ATGTCTGGCGTGTTCATGGT 59.963 50.000 0.00 0.00 0.00 3.55
3022 3084 7.108847 CCTTCTTTTCTCAATCACAGTAGGAT 58.891 38.462 0.00 0.00 0.00 3.24
3353 3416 1.515521 AACTGCAAAGCCTACCACGC 61.516 55.000 0.00 0.00 0.00 5.34
3408 3478 3.498777 GTCACACTTTTCTTCAGTAGCCC 59.501 47.826 0.00 0.00 0.00 5.19
3467 3537 5.221283 GGTCTCACCTGTTACTTATAGCCTC 60.221 48.000 0.00 0.00 34.73 4.70
3507 3579 5.379187 AGTGGATATGCTAATGTTGCATCA 58.621 37.500 4.42 0.00 46.80 3.07
3544 3616 6.334989 TGATTCAAAGCTGCCAAATCTTATG 58.665 36.000 0.00 0.00 0.00 1.90
3546 3618 2.855963 CAAAGCTGCCAAATCTTATGCG 59.144 45.455 0.00 0.00 0.00 4.73
3697 3769 1.272490 TCGAACAATCTTGGAGCTCGT 59.728 47.619 7.83 0.00 0.00 4.18
3735 3808 8.354426 TGTGCCTGAAACTAAACTTATTTTACC 58.646 33.333 0.00 0.00 0.00 2.85
3760 3833 7.337942 CCTTGGTTAATAAGACTTGCTCTTCAT 59.662 37.037 0.00 0.00 40.04 2.57
3767 3840 5.938438 AAGACTTGCTCTTCATGAGAAAC 57.062 39.130 0.00 0.00 45.39 2.78
3881 3964 5.885912 ACAAGCCGATTTCATAACCAAGTAT 59.114 36.000 0.00 0.00 0.00 2.12
3908 3991 9.529325 GTTGCTCTTTTGGTTTAAACTCTAATT 57.471 29.630 17.50 0.00 0.00 1.40
4066 4149 3.989104 GGATGACATCCTGTACCCG 57.011 57.895 24.77 0.00 46.19 5.28
4096 4179 2.872842 GCGTCCCAAGTAAAACCTAGCA 60.873 50.000 0.00 0.00 0.00 3.49
4097 4180 3.606687 CGTCCCAAGTAAAACCTAGCAT 58.393 45.455 0.00 0.00 0.00 3.79
4106 4189 7.040409 CCAAGTAAAACCTAGCATTTGTTCTCT 60.040 37.037 0.00 0.00 0.00 3.10
4107 4190 7.674471 AGTAAAACCTAGCATTTGTTCTCTC 57.326 36.000 0.00 0.00 0.00 3.20
4108 4191 7.224297 AGTAAAACCTAGCATTTGTTCTCTCA 58.776 34.615 0.00 0.00 0.00 3.27
4110 4193 6.566197 AAACCTAGCATTTGTTCTCTCAAG 57.434 37.500 0.00 0.00 0.00 3.02
4134 4218 7.842982 AGTCCTGGAGTAGAATAGAGAAAAAC 58.157 38.462 1.14 0.00 0.00 2.43
4140 4225 5.731591 AGTAGAATAGAGAAAAACGTGGGG 58.268 41.667 0.00 0.00 0.00 4.96
4211 4305 1.034292 GCTCTGGCTGGGATTTCACC 61.034 60.000 0.00 0.00 35.22 4.02
4217 4311 0.388520 GCTGGGATTTCACCGTTTGC 60.389 55.000 0.00 0.00 0.00 3.68
4221 4315 0.388520 GGATTTCACCGTTTGCCAGC 60.389 55.000 0.00 0.00 0.00 4.85
4237 4331 1.473257 CCAGCTCATGCCTAACGCTAA 60.473 52.381 0.00 0.00 40.80 3.09
4239 4333 1.802880 AGCTCATGCCTAACGCTAACG 60.803 52.381 0.00 0.00 42.53 3.18
4259 4353 2.636768 GGCTGTTGTATGCCTGTTTC 57.363 50.000 0.00 0.00 45.26 2.78
4261 4355 1.804151 GCTGTTGTATGCCTGTTTCGA 59.196 47.619 0.00 0.00 0.00 3.71
4275 4374 5.447279 GCCTGTTTCGATTCGTATCATGTTT 60.447 40.000 5.89 0.00 0.00 2.83
4314 4413 2.216750 CTCCCCAACTTGCAATGCGG 62.217 60.000 0.00 0.00 0.00 5.69
4345 4444 3.419793 TGGTTCCTCCAGCAAAGTG 57.580 52.632 0.00 0.00 41.93 3.16
4421 4520 9.225436 GAGGCTATCCTTTGGAGAATAATAAAG 57.775 37.037 0.00 0.00 44.46 1.85
4493 4592 5.423931 TCATGGCAGTGTCTTGGTATTACTA 59.576 40.000 10.41 0.00 0.00 1.82
4495 4594 6.116711 TGGCAGTGTCTTGGTATTACTAAA 57.883 37.500 0.00 0.00 0.00 1.85
4736 4956 3.481839 CACAACAATATCTGCGTGTGTG 58.518 45.455 0.00 0.00 38.60 3.82
4745 4965 3.605013 TGCGTGTGTGTAGCAGAAT 57.395 47.368 0.00 0.00 35.81 2.40
4761 4981 5.366460 AGCAGAATGGACAATGTAGATCAG 58.634 41.667 0.00 0.00 35.86 2.90
4767 4987 8.095792 AGAATGGACAATGTAGATCAGATCATC 58.904 37.037 13.14 5.67 0.00 2.92
4769 4989 6.990798 TGGACAATGTAGATCAGATCATCTC 58.009 40.000 13.14 1.07 34.75 2.75
4770 4990 6.014755 TGGACAATGTAGATCAGATCATCTCC 60.015 42.308 13.14 8.06 34.75 3.71
4771 4991 6.023357 ACAATGTAGATCAGATCATCTCCG 57.977 41.667 13.14 0.00 34.75 4.63
4772 4992 5.047448 ACAATGTAGATCAGATCATCTCCGG 60.047 44.000 13.14 0.00 34.75 5.14
4848 5093 2.732094 GCGTAGTCGTTGCCGTGT 60.732 61.111 0.00 0.00 39.49 4.49
4974 5219 1.279846 TGCATGAGGATCTTGAGTGCA 59.720 47.619 0.00 8.49 42.34 4.57
5083 5328 7.272731 CGTAGAACTACAAATCATCGAGACAAA 59.727 37.037 11.65 0.00 35.87 2.83
5084 5329 7.352719 AGAACTACAAATCATCGAGACAAAC 57.647 36.000 0.00 0.00 0.00 2.93
5085 5330 6.929049 AGAACTACAAATCATCGAGACAAACA 59.071 34.615 0.00 0.00 0.00 2.83
5086 5331 6.712241 ACTACAAATCATCGAGACAAACAG 57.288 37.500 0.00 0.00 0.00 3.16
5087 5332 6.223852 ACTACAAATCATCGAGACAAACAGT 58.776 36.000 0.00 0.00 0.00 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 6.438763 CGAGTTGGCAAATAGTCTTCTTTTT 58.561 36.000 0.00 0.00 0.00 1.94
3 4 5.048713 CCGAGTTGGCAAATAGTCTTCTTTT 60.049 40.000 0.00 0.00 0.00 2.27
4 5 4.455877 CCGAGTTGGCAAATAGTCTTCTTT 59.544 41.667 0.00 0.00 0.00 2.52
5 6 4.003648 CCGAGTTGGCAAATAGTCTTCTT 58.996 43.478 0.00 0.00 0.00 2.52
6 7 3.600388 CCGAGTTGGCAAATAGTCTTCT 58.400 45.455 0.00 0.00 0.00 2.85
7 8 2.678336 CCCGAGTTGGCAAATAGTCTTC 59.322 50.000 0.00 0.00 35.87 2.87
8 9 2.711542 CCCGAGTTGGCAAATAGTCTT 58.288 47.619 0.00 0.00 35.87 3.01
9 10 2.403252 CCCGAGTTGGCAAATAGTCT 57.597 50.000 0.00 0.00 35.87 3.24
19 20 1.396996 CAAATCTAACGCCCGAGTTGG 59.603 52.381 0.00 0.00 33.15 3.77
20 21 1.202031 GCAAATCTAACGCCCGAGTTG 60.202 52.381 0.00 4.82 38.02 3.16
21 22 1.084289 GCAAATCTAACGCCCGAGTT 58.916 50.000 0.00 0.00 38.07 3.01
22 23 0.743345 GGCAAATCTAACGCCCGAGT 60.743 55.000 0.00 0.00 40.07 4.18
23 24 0.742990 TGGCAAATCTAACGCCCGAG 60.743 55.000 0.00 0.00 45.63 4.63
24 25 0.107410 ATGGCAAATCTAACGCCCGA 60.107 50.000 0.00 0.00 45.63 5.14
25 26 0.029300 CATGGCAAATCTAACGCCCG 59.971 55.000 0.00 0.00 45.63 6.13
26 27 0.249031 GCATGGCAAATCTAACGCCC 60.249 55.000 0.00 0.00 45.63 6.13
27 28 0.740737 AGCATGGCAAATCTAACGCC 59.259 50.000 0.00 0.00 46.43 5.68
28 29 2.566952 AAGCATGGCAAATCTAACGC 57.433 45.000 0.00 0.00 0.00 4.84
29 30 8.801715 AATATTTAAGCATGGCAAATCTAACG 57.198 30.769 0.00 0.00 0.00 3.18
32 33 9.748708 GTCAAATATTTAAGCATGGCAAATCTA 57.251 29.630 0.00 0.00 0.00 1.98
33 34 7.436080 CGTCAAATATTTAAGCATGGCAAATCT 59.564 33.333 0.00 0.00 0.00 2.40
34 35 7.222611 ACGTCAAATATTTAAGCATGGCAAATC 59.777 33.333 0.00 0.00 0.00 2.17
35 36 7.041107 ACGTCAAATATTTAAGCATGGCAAAT 58.959 30.769 0.00 0.00 0.00 2.32
36 37 6.393990 ACGTCAAATATTTAAGCATGGCAAA 58.606 32.000 0.00 0.00 0.00 3.68
37 38 5.960113 ACGTCAAATATTTAAGCATGGCAA 58.040 33.333 0.00 0.00 0.00 4.52
38 39 5.574891 ACGTCAAATATTTAAGCATGGCA 57.425 34.783 0.00 0.00 0.00 4.92
39 40 7.979115 TTAACGTCAAATATTTAAGCATGGC 57.021 32.000 0.00 0.00 0.00 4.40
52 53 9.990360 AAACAATCCCTAATTTTAACGTCAAAT 57.010 25.926 0.00 0.00 0.00 2.32
53 54 9.250624 CAAACAATCCCTAATTTTAACGTCAAA 57.749 29.630 0.00 0.00 0.00 2.69
54 55 7.868415 CCAAACAATCCCTAATTTTAACGTCAA 59.132 33.333 0.00 0.00 0.00 3.18
55 56 7.014422 ACCAAACAATCCCTAATTTTAACGTCA 59.986 33.333 0.00 0.00 0.00 4.35
56 57 7.372714 ACCAAACAATCCCTAATTTTAACGTC 58.627 34.615 0.00 0.00 0.00 4.34
57 58 7.292713 ACCAAACAATCCCTAATTTTAACGT 57.707 32.000 0.00 0.00 0.00 3.99
58 59 8.085909 AGAACCAAACAATCCCTAATTTTAACG 58.914 33.333 0.00 0.00 0.00 3.18
61 62 9.250246 CCTAGAACCAAACAATCCCTAATTTTA 57.750 33.333 0.00 0.00 0.00 1.52
62 63 7.310423 GCCTAGAACCAAACAATCCCTAATTTT 60.310 37.037 0.00 0.00 0.00 1.82
63 64 6.154534 GCCTAGAACCAAACAATCCCTAATTT 59.845 38.462 0.00 0.00 0.00 1.82
64 65 5.656859 GCCTAGAACCAAACAATCCCTAATT 59.343 40.000 0.00 0.00 0.00 1.40
65 66 5.201243 GCCTAGAACCAAACAATCCCTAAT 58.799 41.667 0.00 0.00 0.00 1.73
66 67 4.569015 GGCCTAGAACCAAACAATCCCTAA 60.569 45.833 0.00 0.00 0.00 2.69
67 68 3.053917 GGCCTAGAACCAAACAATCCCTA 60.054 47.826 0.00 0.00 0.00 3.53
68 69 2.291605 GGCCTAGAACCAAACAATCCCT 60.292 50.000 0.00 0.00 0.00 4.20
69 70 2.100197 GGCCTAGAACCAAACAATCCC 58.900 52.381 0.00 0.00 0.00 3.85
70 71 3.087370 AGGCCTAGAACCAAACAATCC 57.913 47.619 1.29 0.00 0.00 3.01
71 72 4.079253 TGAAGGCCTAGAACCAAACAATC 58.921 43.478 5.16 0.00 0.00 2.67
72 73 4.112634 TGAAGGCCTAGAACCAAACAAT 57.887 40.909 5.16 0.00 0.00 2.71
73 74 3.586470 TGAAGGCCTAGAACCAAACAA 57.414 42.857 5.16 0.00 0.00 2.83
74 75 3.586470 TTGAAGGCCTAGAACCAAACA 57.414 42.857 5.16 0.00 0.00 2.83
75 76 4.398358 GGTATTGAAGGCCTAGAACCAAAC 59.602 45.833 5.16 6.99 0.00 2.93
76 77 4.043561 TGGTATTGAAGGCCTAGAACCAAA 59.956 41.667 18.08 2.99 33.03 3.28
77 78 3.589735 TGGTATTGAAGGCCTAGAACCAA 59.410 43.478 18.08 12.56 33.03 3.67
78 79 3.054655 GTGGTATTGAAGGCCTAGAACCA 60.055 47.826 5.16 13.32 33.53 3.67
79 80 3.054655 TGTGGTATTGAAGGCCTAGAACC 60.055 47.826 5.16 10.66 0.00 3.62
80 81 3.939592 GTGTGGTATTGAAGGCCTAGAAC 59.060 47.826 5.16 0.00 0.00 3.01
81 82 3.844211 AGTGTGGTATTGAAGGCCTAGAA 59.156 43.478 5.16 1.36 0.00 2.10
82 83 3.450904 AGTGTGGTATTGAAGGCCTAGA 58.549 45.455 5.16 0.00 0.00 2.43
83 84 3.914426 AGTGTGGTATTGAAGGCCTAG 57.086 47.619 5.16 0.00 0.00 3.02
84 85 4.331968 CAAAGTGTGGTATTGAAGGCCTA 58.668 43.478 5.16 0.00 0.00 3.93
85 86 3.157087 CAAAGTGTGGTATTGAAGGCCT 58.843 45.455 0.00 0.00 0.00 5.19
86 87 2.352715 GCAAAGTGTGGTATTGAAGGCC 60.353 50.000 0.00 0.00 0.00 5.19
87 88 2.352715 GGCAAAGTGTGGTATTGAAGGC 60.353 50.000 0.00 0.00 0.00 4.35
88 89 2.890311 TGGCAAAGTGTGGTATTGAAGG 59.110 45.455 0.00 0.00 0.00 3.46
89 90 3.317711 TGTGGCAAAGTGTGGTATTGAAG 59.682 43.478 0.00 0.00 0.00 3.02
90 91 3.291584 TGTGGCAAAGTGTGGTATTGAA 58.708 40.909 0.00 0.00 0.00 2.69
91 92 2.937519 TGTGGCAAAGTGTGGTATTGA 58.062 42.857 0.00 0.00 0.00 2.57
92 93 3.940209 ATGTGGCAAAGTGTGGTATTG 57.060 42.857 0.00 0.00 0.00 1.90
93 94 4.953940 AAATGTGGCAAAGTGTGGTATT 57.046 36.364 0.00 0.00 0.00 1.89
94 95 4.953940 AAAATGTGGCAAAGTGTGGTAT 57.046 36.364 0.00 0.00 0.00 2.73
95 96 4.744795 AAAAATGTGGCAAAGTGTGGTA 57.255 36.364 0.00 0.00 0.00 3.25
96 97 3.625649 AAAAATGTGGCAAAGTGTGGT 57.374 38.095 0.00 0.00 0.00 4.16
116 117 4.571372 CCGTAGGCAAACTTGGTAAAAA 57.429 40.909 0.00 0.00 46.14 1.94
136 137 2.304221 AGGAGGGTTTGGTTTAAGCC 57.696 50.000 0.54 0.54 44.20 4.35
137 138 5.794726 TTTTAGGAGGGTTTGGTTTAAGC 57.205 39.130 0.00 0.00 0.00 3.09
138 139 6.269077 ACCATTTTAGGAGGGTTTGGTTTAAG 59.731 38.462 0.00 0.00 32.23 1.85
139 140 6.042208 CACCATTTTAGGAGGGTTTGGTTTAA 59.958 38.462 0.00 0.00 33.88 1.52
140 141 5.540719 CACCATTTTAGGAGGGTTTGGTTTA 59.459 40.000 0.00 0.00 33.88 2.01
141 142 4.346709 CACCATTTTAGGAGGGTTTGGTTT 59.653 41.667 0.00 0.00 33.88 3.27
142 143 3.901222 CACCATTTTAGGAGGGTTTGGTT 59.099 43.478 0.00 0.00 33.88 3.67
143 144 3.141272 TCACCATTTTAGGAGGGTTTGGT 59.859 43.478 0.00 0.00 36.46 3.67
144 145 3.763897 CTCACCATTTTAGGAGGGTTTGG 59.236 47.826 0.00 0.00 0.00 3.28
145 146 4.459337 GTCTCACCATTTTAGGAGGGTTTG 59.541 45.833 0.00 0.00 0.00 2.93
146 147 4.354087 AGTCTCACCATTTTAGGAGGGTTT 59.646 41.667 0.00 0.00 0.00 3.27
147 148 3.916989 AGTCTCACCATTTTAGGAGGGTT 59.083 43.478 0.00 0.00 0.00 4.11
148 149 3.532102 AGTCTCACCATTTTAGGAGGGT 58.468 45.455 0.00 0.00 0.00 4.34
149 150 4.265073 CAAGTCTCACCATTTTAGGAGGG 58.735 47.826 0.00 0.00 0.00 4.30
150 151 3.691609 GCAAGTCTCACCATTTTAGGAGG 59.308 47.826 0.00 0.00 0.00 4.30
151 152 3.691609 GGCAAGTCTCACCATTTTAGGAG 59.308 47.826 0.00 0.00 0.00 3.69
152 153 3.330701 AGGCAAGTCTCACCATTTTAGGA 59.669 43.478 0.00 0.00 0.00 2.94
153 154 3.690460 AGGCAAGTCTCACCATTTTAGG 58.310 45.455 0.00 0.00 0.00 2.69
154 155 5.123979 GGTTAGGCAAGTCTCACCATTTTAG 59.876 44.000 0.34 0.00 32.71 1.85
155 156 5.007682 GGTTAGGCAAGTCTCACCATTTTA 58.992 41.667 0.34 0.00 32.71 1.52
156 157 3.826729 GGTTAGGCAAGTCTCACCATTTT 59.173 43.478 0.34 0.00 32.71 1.82
157 158 3.074538 AGGTTAGGCAAGTCTCACCATTT 59.925 43.478 7.69 0.00 34.39 2.32
158 159 2.644798 AGGTTAGGCAAGTCTCACCATT 59.355 45.455 7.69 0.00 34.39 3.16
159 160 2.269940 AGGTTAGGCAAGTCTCACCAT 58.730 47.619 7.69 0.00 34.39 3.55
160 161 1.729586 AGGTTAGGCAAGTCTCACCA 58.270 50.000 7.69 0.00 34.39 4.17
161 162 2.861147 AAGGTTAGGCAAGTCTCACC 57.139 50.000 0.00 0.00 32.63 4.02
162 163 3.863041 CCTAAGGTTAGGCAAGTCTCAC 58.137 50.000 2.80 0.00 43.43 3.51
182 183 3.490249 GGTTTGTGCTTAAGGTTGACACC 60.490 47.826 4.29 0.00 44.67 4.16
183 184 3.129638 TGGTTTGTGCTTAAGGTTGACAC 59.870 43.478 4.29 4.06 0.00 3.67
184 185 3.357203 TGGTTTGTGCTTAAGGTTGACA 58.643 40.909 4.29 0.00 0.00 3.58
185 186 4.379339 TTGGTTTGTGCTTAAGGTTGAC 57.621 40.909 4.29 0.00 0.00 3.18
186 187 4.220821 TGTTTGGTTTGTGCTTAAGGTTGA 59.779 37.500 4.29 0.00 0.00 3.18
187 188 4.328712 GTGTTTGGTTTGTGCTTAAGGTTG 59.671 41.667 4.29 0.00 0.00 3.77
188 189 4.500127 GTGTTTGGTTTGTGCTTAAGGTT 58.500 39.130 4.29 0.00 0.00 3.50
189 190 3.118920 GGTGTTTGGTTTGTGCTTAAGGT 60.119 43.478 4.29 0.00 0.00 3.50
190 191 3.132111 AGGTGTTTGGTTTGTGCTTAAGG 59.868 43.478 4.29 0.00 0.00 2.69
191 192 4.385358 AGGTGTTTGGTTTGTGCTTAAG 57.615 40.909 0.00 0.00 0.00 1.85
192 193 4.810191 AAGGTGTTTGGTTTGTGCTTAA 57.190 36.364 0.00 0.00 0.00 1.85
193 194 4.810191 AAAGGTGTTTGGTTTGTGCTTA 57.190 36.364 0.00 0.00 0.00 3.09
194 195 3.694043 AAAGGTGTTTGGTTTGTGCTT 57.306 38.095 0.00 0.00 0.00 3.91
195 196 5.508994 GCTATAAAGGTGTTTGGTTTGTGCT 60.509 40.000 0.00 0.00 0.00 4.40
196 197 4.684242 GCTATAAAGGTGTTTGGTTTGTGC 59.316 41.667 0.00 0.00 0.00 4.57
197 198 4.915085 CGCTATAAAGGTGTTTGGTTTGTG 59.085 41.667 0.00 0.00 0.00 3.33
198 199 4.822896 TCGCTATAAAGGTGTTTGGTTTGT 59.177 37.500 0.00 0.00 0.00 2.83
199 200 5.365403 TCGCTATAAAGGTGTTTGGTTTG 57.635 39.130 0.00 0.00 0.00 2.93
200 201 6.394025 TTTCGCTATAAAGGTGTTTGGTTT 57.606 33.333 0.00 0.00 0.00 3.27
201 202 6.584185 ATTTCGCTATAAAGGTGTTTGGTT 57.416 33.333 0.00 0.00 0.00 3.67
202 203 6.584185 AATTTCGCTATAAAGGTGTTTGGT 57.416 33.333 0.00 0.00 0.00 3.67
203 204 7.596995 TGAAAATTTCGCTATAAAGGTGTTTGG 59.403 33.333 0.97 0.00 0.00 3.28
204 205 8.514136 TGAAAATTTCGCTATAAAGGTGTTTG 57.486 30.769 0.97 0.00 0.00 2.93
205 206 9.191995 CTTGAAAATTTCGCTATAAAGGTGTTT 57.808 29.630 0.97 0.00 0.00 2.83
206 207 8.573035 TCTTGAAAATTTCGCTATAAAGGTGTT 58.427 29.630 0.97 0.00 0.00 3.32
207 208 8.106247 TCTTGAAAATTTCGCTATAAAGGTGT 57.894 30.769 0.97 0.00 0.00 4.16
208 209 8.850452 GTTCTTGAAAATTTCGCTATAAAGGTG 58.150 33.333 0.97 0.00 0.00 4.00
209 210 8.573035 TGTTCTTGAAAATTTCGCTATAAAGGT 58.427 29.630 0.97 0.00 0.00 3.50
210 211 8.964420 TGTTCTTGAAAATTTCGCTATAAAGG 57.036 30.769 0.97 0.00 0.00 3.11
264 265 1.202770 AGGTCACTTGGTTGCACTACC 60.203 52.381 0.21 0.21 38.73 3.18
265 266 2.256117 AGGTCACTTGGTTGCACTAC 57.744 50.000 0.00 0.00 0.00 2.73
269 270 3.317711 CACATTTAGGTCACTTGGTTGCA 59.682 43.478 0.00 0.00 0.00 4.08
283 284 6.582636 TGAAGGGAGTAGCATACACATTTAG 58.417 40.000 0.00 0.00 46.26 1.85
310 311 2.112998 GCACACCCTATGTACTACCCA 58.887 52.381 0.00 0.00 40.64 4.51
341 342 9.434559 GTATTTAATTAGTCAAAATCAGCGACC 57.565 33.333 0.00 0.00 0.00 4.79
362 363 7.554959 TTTTGAGACAGAGGGAGTAGTATTT 57.445 36.000 0.00 0.00 0.00 1.40
367 368 9.137459 TCTTATATTTTGAGACAGAGGGAGTAG 57.863 37.037 0.00 0.00 0.00 2.57
368 369 9.488762 TTCTTATATTTTGAGACAGAGGGAGTA 57.511 33.333 0.00 0.00 0.00 2.59
369 370 7.979786 TCTTATATTTTGAGACAGAGGGAGT 57.020 36.000 0.00 0.00 0.00 3.85
370 371 7.436673 CGTTCTTATATTTTGAGACAGAGGGAG 59.563 40.741 0.00 0.00 0.00 4.30
371 372 7.093465 ACGTTCTTATATTTTGAGACAGAGGGA 60.093 37.037 0.00 0.00 0.00 4.20
372 373 7.042335 ACGTTCTTATATTTTGAGACAGAGGG 58.958 38.462 0.00 0.00 0.00 4.30
373 374 8.480643 AACGTTCTTATATTTTGAGACAGAGG 57.519 34.615 0.00 0.00 0.00 3.69
388 389 9.607285 CTAGTGCAATGTTAAAAACGTTCTTAT 57.393 29.630 0.00 0.00 38.51 1.73
389 390 8.614346 ACTAGTGCAATGTTAAAAACGTTCTTA 58.386 29.630 0.00 0.00 38.51 2.10
390 391 7.431084 CACTAGTGCAATGTTAAAAACGTTCTT 59.569 33.333 10.54 0.00 38.51 2.52
391 392 6.910433 CACTAGTGCAATGTTAAAAACGTTCT 59.090 34.615 10.54 0.00 38.51 3.01
392 393 6.689669 ACACTAGTGCAATGTTAAAAACGTTC 59.310 34.615 22.90 0.00 38.51 3.95
393 394 6.557110 ACACTAGTGCAATGTTAAAAACGTT 58.443 32.000 22.90 0.00 41.11 3.99
394 395 6.126568 ACACTAGTGCAATGTTAAAAACGT 57.873 33.333 22.90 0.00 0.00 3.99
395 396 6.195868 TGACACTAGTGCAATGTTAAAAACG 58.804 36.000 22.90 0.00 0.00 3.60
396 397 7.979115 TTGACACTAGTGCAATGTTAAAAAC 57.021 32.000 22.90 0.13 0.00 2.43
397 398 8.988064 TTTTGACACTAGTGCAATGTTAAAAA 57.012 26.923 22.90 10.73 38.25 1.94
398 399 8.865001 GTTTTTGACACTAGTGCAATGTTAAAA 58.135 29.630 22.90 17.90 38.96 1.52
399 400 7.219154 CGTTTTTGACACTAGTGCAATGTTAAA 59.781 33.333 22.90 18.18 32.08 1.52
400 401 6.689241 CGTTTTTGACACTAGTGCAATGTTAA 59.311 34.615 22.90 14.24 30.87 2.01
401 402 6.183360 ACGTTTTTGACACTAGTGCAATGTTA 60.183 34.615 22.90 9.69 30.87 2.41
402 403 5.034152 CGTTTTTGACACTAGTGCAATGTT 58.966 37.500 22.90 1.55 30.87 2.71
403 404 4.095782 ACGTTTTTGACACTAGTGCAATGT 59.904 37.500 22.90 17.24 30.87 2.71
404 405 4.597079 ACGTTTTTGACACTAGTGCAATG 58.403 39.130 22.90 16.75 30.87 2.82
405 406 4.893424 ACGTTTTTGACACTAGTGCAAT 57.107 36.364 22.90 3.19 30.87 3.56
406 407 4.688511 AACGTTTTTGACACTAGTGCAA 57.311 36.364 22.90 21.92 0.00 4.08
407 408 4.688511 AAACGTTTTTGACACTAGTGCA 57.311 36.364 22.90 17.67 0.00 4.57
408 409 7.673810 ATAAAAACGTTTTTGACACTAGTGC 57.326 32.000 36.92 15.35 40.33 4.40
417 418 9.857957 GGTCCCATAATATAAAAACGTTTTTGA 57.142 29.630 36.92 27.73 40.33 2.69
418 419 8.800031 CGGTCCCATAATATAAAAACGTTTTTG 58.200 33.333 36.92 24.07 40.33 2.44
419 420 8.738106 TCGGTCCCATAATATAAAAACGTTTTT 58.262 29.630 33.94 33.94 42.51 1.94
420 421 8.278729 TCGGTCCCATAATATAAAAACGTTTT 57.721 30.769 20.26 20.26 0.00 2.43
421 422 7.012610 CCTCGGTCCCATAATATAAAAACGTTT 59.987 37.037 7.96 7.96 0.00 3.60
422 423 6.484308 CCTCGGTCCCATAATATAAAAACGTT 59.516 38.462 0.00 0.00 0.00 3.99
423 424 5.993441 CCTCGGTCCCATAATATAAAAACGT 59.007 40.000 0.00 0.00 0.00 3.99
424 425 5.410439 CCCTCGGTCCCATAATATAAAAACG 59.590 44.000 0.00 0.00 0.00 3.60
425 426 6.536447 TCCCTCGGTCCCATAATATAAAAAC 58.464 40.000 0.00 0.00 0.00 2.43
426 427 6.330778 ACTCCCTCGGTCCCATAATATAAAAA 59.669 38.462 0.00 0.00 0.00 1.94
427 428 5.847817 ACTCCCTCGGTCCCATAATATAAAA 59.152 40.000 0.00 0.00 0.00 1.52
428 429 5.408824 ACTCCCTCGGTCCCATAATATAAA 58.591 41.667 0.00 0.00 0.00 1.40
429 430 5.019657 ACTCCCTCGGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
430 431 4.687262 ACTCCCTCGGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
431 432 3.562108 ACTCCCTCGGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
432 433 4.687262 ATACTCCCTCGGTCCCATAATA 57.313 45.455 0.00 0.00 0.00 0.98
433 434 3.562108 ATACTCCCTCGGTCCCATAAT 57.438 47.619 0.00 0.00 0.00 1.28
434 435 4.202749 ACATATACTCCCTCGGTCCCATAA 60.203 45.833 0.00 0.00 0.00 1.90
435 436 3.335786 ACATATACTCCCTCGGTCCCATA 59.664 47.826 0.00 0.00 0.00 2.74
436 437 2.111972 ACATATACTCCCTCGGTCCCAT 59.888 50.000 0.00 0.00 0.00 4.00
437 438 1.502039 ACATATACTCCCTCGGTCCCA 59.498 52.381 0.00 0.00 0.00 4.37
438 439 2.305858 ACATATACTCCCTCGGTCCC 57.694 55.000 0.00 0.00 0.00 4.46
439 440 6.461231 GCATATAACATATACTCCCTCGGTCC 60.461 46.154 0.00 0.00 0.00 4.46
440 441 6.461231 GGCATATAACATATACTCCCTCGGTC 60.461 46.154 0.00 0.00 0.00 4.79
441 442 5.363005 GGCATATAACATATACTCCCTCGGT 59.637 44.000 0.00 0.00 0.00 4.69
442 443 5.362717 TGGCATATAACATATACTCCCTCGG 59.637 44.000 0.00 0.00 0.00 4.63
443 444 6.273825 GTGGCATATAACATATACTCCCTCG 58.726 44.000 0.00 0.00 0.00 4.63
444 445 6.156256 TGGTGGCATATAACATATACTCCCTC 59.844 42.308 0.00 0.00 0.00 4.30
445 446 6.029431 TGGTGGCATATAACATATACTCCCT 58.971 40.000 0.00 0.00 0.00 4.20
446 447 6.308015 TGGTGGCATATAACATATACTCCC 57.692 41.667 0.00 0.00 0.00 4.30
447 448 8.512138 GTTTTGGTGGCATATAACATATACTCC 58.488 37.037 0.00 0.00 0.00 3.85
448 449 9.284968 AGTTTTGGTGGCATATAACATATACTC 57.715 33.333 0.00 0.00 0.00 2.59
506 507 5.987347 GCTGGCATAAAAAGCACATCATTAT 59.013 36.000 0.00 0.00 36.91 1.28
507 508 5.105432 TGCTGGCATAAAAAGCACATCATTA 60.105 36.000 0.00 0.00 41.83 1.90
526 527 2.037121 TCATGTACCATCCGTATGCTGG 59.963 50.000 0.00 1.32 36.09 4.85
528 529 4.380550 CGTATCATGTACCATCCGTATGCT 60.381 45.833 0.00 0.00 0.00 3.79
530 531 5.106277 ACTCGTATCATGTACCATCCGTATG 60.106 44.000 0.00 0.00 0.00 2.39
531 532 5.008331 ACTCGTATCATGTACCATCCGTAT 58.992 41.667 0.00 0.00 0.00 3.06
532 533 4.392047 ACTCGTATCATGTACCATCCGTA 58.608 43.478 0.00 0.00 0.00 4.02
533 534 3.220110 ACTCGTATCATGTACCATCCGT 58.780 45.455 0.00 0.00 0.00 4.69
534 535 3.917329 ACTCGTATCATGTACCATCCG 57.083 47.619 0.00 0.00 0.00 4.18
535 536 5.700722 TGTACTCGTATCATGTACCATCC 57.299 43.478 0.00 0.00 36.63 3.51
578 580 9.967346 GGTACATGTATCATATAGCATTCGTAT 57.033 33.333 11.38 0.00 0.00 3.06
587 589 5.105513 TGTGCCGGGTACATGTATCATATAG 60.106 44.000 17.73 2.70 0.00 1.31
653 660 8.931385 TTTGTTACGGAGATAGTATTTGGTAC 57.069 34.615 0.00 0.00 0.00 3.34
656 663 8.889717 ACATTTTGTTACGGAGATAGTATTTGG 58.110 33.333 0.00 0.00 0.00 3.28
672 679 9.699703 GCCATAAAAAGGTCTTACATTTTGTTA 57.300 29.630 3.52 0.00 40.61 2.41
746 753 1.949525 CCCAAGTCTGTTTGACCACAG 59.050 52.381 0.00 0.00 46.46 3.66
781 792 5.428783 CCCTCCTTTTCAGATACTCCCTTTA 59.571 44.000 0.00 0.00 0.00 1.85
786 797 4.034410 ACTCCCTCCTTTTCAGATACTCC 58.966 47.826 0.00 0.00 0.00 3.85
787 798 4.682050 GCACTCCCTCCTTTTCAGATACTC 60.682 50.000 0.00 0.00 0.00 2.59
788 799 3.198853 GCACTCCCTCCTTTTCAGATACT 59.801 47.826 0.00 0.00 0.00 2.12
789 800 3.198853 AGCACTCCCTCCTTTTCAGATAC 59.801 47.826 0.00 0.00 0.00 2.24
832 858 0.592637 TTTGTGCAGTCGCCAGAATG 59.407 50.000 0.00 0.00 44.50 2.67
833 859 1.001378 GTTTTGTGCAGTCGCCAGAAT 60.001 47.619 0.00 0.00 37.32 2.40
834 860 0.380378 GTTTTGTGCAGTCGCCAGAA 59.620 50.000 0.00 0.00 37.32 3.02
835 861 1.771073 CGTTTTGTGCAGTCGCCAGA 61.771 55.000 0.00 0.00 37.32 3.86
836 862 1.369209 CGTTTTGTGCAGTCGCCAG 60.369 57.895 0.00 0.00 37.32 4.85
837 863 1.369839 TTCGTTTTGTGCAGTCGCCA 61.370 50.000 0.00 0.00 37.32 5.69
838 864 0.248296 TTTCGTTTTGTGCAGTCGCC 60.248 50.000 0.00 0.00 37.32 5.54
839 865 1.708680 GATTTCGTTTTGTGCAGTCGC 59.291 47.619 0.00 0.00 39.24 5.19
840 866 2.286713 TGGATTTCGTTTTGTGCAGTCG 60.287 45.455 0.00 0.00 0.00 4.18
841 867 3.347958 TGGATTTCGTTTTGTGCAGTC 57.652 42.857 0.00 0.00 0.00 3.51
842 868 3.791973 TTGGATTTCGTTTTGTGCAGT 57.208 38.095 0.00 0.00 0.00 4.40
843 869 4.260172 GGTTTTGGATTTCGTTTTGTGCAG 60.260 41.667 0.00 0.00 0.00 4.41
860 886 3.865164 GGAGCTTCTTGTGTTTGGTTTTG 59.135 43.478 0.00 0.00 0.00 2.44
990 1018 3.991051 CGCTCCATATCCGCCGGT 61.991 66.667 1.63 0.00 0.00 5.28
1146 1183 0.250295 CTTTGGACCTGAGCACCGAA 60.250 55.000 0.00 0.00 0.00 4.30
1238 1275 2.036387 GGTAAGAGAAGAGGAGAGGGC 58.964 57.143 0.00 0.00 0.00 5.19
1239 1276 2.246327 AGGGTAAGAGAAGAGGAGAGGG 59.754 54.545 0.00 0.00 0.00 4.30
1277 1314 2.700897 GCCCACTAGAGATCCTAAAGCA 59.299 50.000 0.00 0.00 0.00 3.91
1331 1368 1.212688 CAGGGGGCACAGATTACATGA 59.787 52.381 0.00 0.00 0.00 3.07
1395 1432 3.345011 CGTGTGTGCATCACCGCA 61.345 61.111 15.76 2.36 45.61 5.69
1441 1479 1.008538 GCAAACAACACAGGAGCCG 60.009 57.895 0.00 0.00 0.00 5.52
1493 1531 2.294233 TGAGTTGCAATCAAGGTGCTTC 59.706 45.455 0.59 0.00 42.69 3.86
1525 1563 6.700960 TGAACATTGCAATTTTGTCGAATTCT 59.299 30.769 15.28 0.00 0.00 2.40
1662 1700 1.092345 GCCGAGCATGTCTCCCTTTC 61.092 60.000 10.34 0.00 38.62 2.62
1665 1703 2.685017 TGCCGAGCATGTCTCCCT 60.685 61.111 10.34 0.00 38.62 4.20
1674 1712 4.478371 CCTCAGGCATGCCGAGCA 62.478 66.667 34.24 20.42 44.86 4.26
1712 1750 3.009473 TCCAATTGTCTTCTTCTGGGAGG 59.991 47.826 4.43 0.00 0.00 4.30
1718 1756 4.511826 GTGTTCGTCCAATTGTCTTCTTCT 59.488 41.667 4.43 0.00 0.00 2.85
1722 1760 4.545823 TTGTGTTCGTCCAATTGTCTTC 57.454 40.909 4.43 0.00 0.00 2.87
1739 1777 2.947652 CAGGATGGTGCTAGGATTTGTG 59.052 50.000 0.00 0.00 0.00 3.33
1759 1797 9.906660 GGATGTAATAACTTTGAATGTTTGTCA 57.093 29.630 1.70 0.00 0.00 3.58
1797 1835 5.543507 TTCTTTTGTGGCACCAATGTTAT 57.456 34.783 16.26 0.00 0.00 1.89
1804 1842 3.572255 GGTAGAATTCTTTTGTGGCACCA 59.428 43.478 14.36 0.00 0.00 4.17
1805 1843 3.572255 TGGTAGAATTCTTTTGTGGCACC 59.428 43.478 14.36 12.52 0.00 5.01
1880 1918 7.124298 ACAGTCAATGGCAGTAGTAGAGAATAA 59.876 37.037 0.00 0.00 0.00 1.40
1901 1939 3.056749 CACAGGTCCAGGTACTAACAGTC 60.057 52.174 0.00 0.00 36.02 3.51
1903 1941 2.233922 CCACAGGTCCAGGTACTAACAG 59.766 54.545 0.00 0.00 36.02 3.16
1909 1947 0.613777 CTTCCCACAGGTCCAGGTAC 59.386 60.000 0.00 0.00 0.00 3.34
1968 2006 6.672147 ACATAAATGCAGTGACTTTCTTGTC 58.328 36.000 0.00 0.00 37.47 3.18
1994 2032 8.759641 CAGAAAATCCAGAATCTGATACGTAAG 58.240 37.037 12.53 0.00 41.38 2.34
2015 2061 5.178623 CAGGCACGTATAAACTCAACAGAAA 59.821 40.000 0.00 0.00 0.00 2.52
2032 2078 0.321564 TTCCCAGAACATCAGGCACG 60.322 55.000 0.00 0.00 0.00 5.34
2038 2084 1.492599 TGTGTGGTTCCCAGAACATCA 59.507 47.619 9.50 5.13 32.34 3.07
2073 2121 5.942236 CACATAATGGAGACCTAATCCCATG 59.058 44.000 0.00 0.00 38.01 3.66
2077 2125 6.226787 CAGTCACATAATGGAGACCTAATCC 58.773 44.000 0.00 0.00 37.35 3.01
2087 2135 5.355071 GTCATCTTTGCAGTCACATAATGGA 59.645 40.000 0.00 0.00 0.00 3.41
2115 2163 9.713740 CAATGAAACTGAATAAAGTATCTGCTC 57.286 33.333 0.00 0.00 0.00 4.26
2147 2195 4.108501 TCGATGCCCTGACCTAATACTA 57.891 45.455 0.00 0.00 0.00 1.82
2245 2293 8.715088 TGATTTAGCATATTCAACTGATCATCG 58.285 33.333 0.00 0.00 0.00 3.84
2368 2416 5.041940 GGTGAGACGATAAATCCAGTGTAC 58.958 45.833 0.00 0.00 0.00 2.90
2465 2526 5.784578 AGGATAAAACAAGTCAACCCAAC 57.215 39.130 0.00 0.00 0.00 3.77
2572 2633 1.757682 TGAAGTTGGAAAGGTTGCGT 58.242 45.000 0.00 0.00 0.00 5.24
2683 2744 5.725362 AGAAGAAGAAATACCTCAACTCCG 58.275 41.667 0.00 0.00 0.00 4.63
2728 2789 6.690098 GTGAGCTGACATGTTAAGCATAATTG 59.310 38.462 26.85 1.39 39.47 2.32
2731 2792 5.122239 GTGTGAGCTGACATGTTAAGCATAA 59.878 40.000 26.85 14.49 39.47 1.90
2931 2993 2.627945 GATTACCATGAACACGCCAGA 58.372 47.619 0.00 0.00 0.00 3.86
3022 3084 4.115270 TGGCATGCCAGCATTCAA 57.885 50.000 35.59 10.49 41.89 2.69
3092 3155 1.896220 TACTGGCCAAGCAGTTTCAG 58.104 50.000 7.01 0.00 33.26 3.02
3177 3240 4.083110 TCTGTCAATAGCTGCAGAAAAAGC 60.083 41.667 20.43 0.47 36.14 3.51
3353 3416 3.056678 CCTCTGGCAGTGATCTAGCATAG 60.057 52.174 17.63 1.55 41.04 2.23
3467 3537 6.780457 ATCCACTCATTTTCATTAACAGGG 57.220 37.500 0.00 0.00 0.00 4.45
3507 3579 6.537301 CAGCTTTGAATCATGCAATAACCAAT 59.463 34.615 10.41 0.00 0.00 3.16
3544 3616 8.711457 TCTACTGTGGTAAAATTAACTTTACGC 58.289 33.333 12.07 8.80 40.97 4.42
3560 3632 5.077564 TCTGTATTGTCTGTCTACTGTGGT 58.922 41.667 0.00 0.00 0.00 4.16
3573 3645 9.406828 GTTTTAGGGAACATTTTCTGTATTGTC 57.593 33.333 0.00 0.00 36.98 3.18
3630 3702 2.106683 GTTCCTCCAATCACCGCGG 61.107 63.158 26.86 26.86 0.00 6.46
3657 3729 4.101942 CGACTCAGAATGCAGACTACTTC 58.898 47.826 0.00 0.00 34.76 3.01
3735 3808 7.672983 TGAAGAGCAAGTCTTATTAACCAAG 57.327 36.000 0.00 0.00 46.21 3.61
3760 3833 8.245491 CCAATGTTAATCATCACATGTTTCTCA 58.755 33.333 0.00 0.00 35.48 3.27
3767 3840 9.498176 TCTAGATCCAATGTTAATCATCACATG 57.502 33.333 0.00 0.00 35.48 3.21
3796 3871 6.539826 TGCGATGTTATCAAGATGAGTGAAAT 59.460 34.615 0.00 0.00 0.00 2.17
3881 3964 6.524101 AGAGTTTAAACCAAAAGAGCAACA 57.476 33.333 14.72 0.00 0.00 3.33
3908 3991 2.093021 TCGATGCAAATCCATGGACTCA 60.093 45.455 18.99 12.66 0.00 3.41
3997 4080 2.465860 TCATGTTCCTAACCACACCG 57.534 50.000 0.00 0.00 0.00 4.94
4066 4149 2.357760 TTGGGACGCTTGCGGTAC 60.358 61.111 19.19 9.68 0.00 3.34
4096 4179 4.349342 ACTCCAGGACTTGAGAGAACAAAT 59.651 41.667 7.35 0.00 32.03 2.32
4097 4180 3.711704 ACTCCAGGACTTGAGAGAACAAA 59.288 43.478 7.35 0.00 32.03 2.83
4106 4189 6.328782 TCTCTATTCTACTCCAGGACTTGA 57.671 41.667 0.00 0.00 0.00 3.02
4107 4190 7.411486 TTTCTCTATTCTACTCCAGGACTTG 57.589 40.000 0.00 0.00 0.00 3.16
4108 4191 8.315482 GTTTTTCTCTATTCTACTCCAGGACTT 58.685 37.037 0.00 0.00 0.00 3.01
4110 4193 6.752815 CGTTTTTCTCTATTCTACTCCAGGAC 59.247 42.308 0.00 0.00 0.00 3.85
4134 4218 2.859165 ATAGATTACATGCCCCCACG 57.141 50.000 0.00 0.00 0.00 4.94
4140 4225 4.392138 GCCGGAAGTAATAGATTACATGCC 59.608 45.833 5.05 10.15 43.83 4.40
4217 4311 3.414272 GCGTTAGGCATGAGCTGG 58.586 61.111 0.00 0.00 42.87 4.85
4259 4353 6.106877 ACCAAAGAAACATGATACGAATCG 57.893 37.500 0.00 0.00 34.60 3.34
4261 4355 7.011482 GCTCTACCAAAGAAACATGATACGAAT 59.989 37.037 0.00 0.00 32.46 3.34
4275 4374 1.475403 CGGAGAGGCTCTACCAAAGA 58.525 55.000 21.00 0.00 43.14 2.52
4314 4413 3.006247 GAGGAACCAGCAGAATGAAGAC 58.994 50.000 0.00 0.00 39.69 3.01
4342 4441 6.490040 AGTTTTGTTACATTGCATCCTACACT 59.510 34.615 0.00 0.00 0.00 3.55
4389 4488 6.770286 TCTCCAAAGGATAGCCTCAAATAT 57.230 37.500 0.00 0.00 46.28 1.28
4421 4520 3.807071 CCAAAATGGCGGCCAATTATTAC 59.193 43.478 27.70 0.00 36.95 1.89
4656 4870 1.542472 TCTACGAATGGCTCACACGAA 59.458 47.619 0.00 0.00 0.00 3.85
4714 4928 2.483877 ACACACGCAGATATTGTTGTGG 59.516 45.455 16.50 9.73 42.51 4.17
4717 4931 3.811722 ACACACACGCAGATATTGTTG 57.188 42.857 0.00 0.00 0.00 3.33
4736 4956 6.283694 TGATCTACATTGTCCATTCTGCTAC 58.716 40.000 0.00 0.00 0.00 3.58
4745 4965 6.014755 GGAGATGATCTGATCTACATTGTCCA 60.015 42.308 17.82 0.00 33.88 4.02
4761 4981 1.403814 TCCACTGACCGGAGATGATC 58.596 55.000 9.46 0.00 0.00 2.92
4769 4989 0.244994 CTGAAGTCTCCACTGACCGG 59.755 60.000 0.00 0.00 37.66 5.28
4770 4990 0.389166 GCTGAAGTCTCCACTGACCG 60.389 60.000 0.00 0.00 37.66 4.79
4771 4991 0.972883 AGCTGAAGTCTCCACTGACC 59.027 55.000 0.00 0.00 37.66 4.02
4772 4992 2.362169 GAGCTGAAGTCTCCACTGAC 57.638 55.000 0.00 0.00 37.23 3.51
4817 5062 2.615262 CTACGCCGTCTGGGAGAAGC 62.615 65.000 0.00 0.00 37.92 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.