Multiple sequence alignment - TraesCS7B01G286700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G286700 chr7B 100.000 3696 0 0 1 3696 522140585 522144280 0.000000e+00 6826.0
1 TraesCS7B01G286700 chr7B 90.098 1424 93 30 1491 2881 521197232 521195824 0.000000e+00 1805.0
2 TraesCS7B01G286700 chr7B 90.042 1426 91 28 1491 2881 521150620 521149211 0.000000e+00 1799.0
3 TraesCS7B01G286700 chr7B 89.458 683 37 20 663 1339 521151507 521150854 0.000000e+00 830.0
4 TraesCS7B01G286700 chr7B 83.918 827 56 28 663 1464 521198146 521197372 0.000000e+00 719.0
5 TraesCS7B01G286700 chr7D 89.337 2776 156 61 144 2856 493202374 493205072 0.000000e+00 3358.0
6 TraesCS7B01G286700 chr7D 90.750 1427 94 24 1491 2895 493560546 493561956 0.000000e+00 1869.0
7 TraesCS7B01G286700 chr7D 89.972 1426 81 29 1491 2881 491873369 491871971 0.000000e+00 1784.0
8 TraesCS7B01G286700 chr7D 91.799 756 46 7 2953 3696 493562117 493562868 0.000000e+00 1038.0
9 TraesCS7B01G286700 chr7D 91.700 494 27 6 971 1464 491873996 491873517 0.000000e+00 673.0
10 TraesCS7B01G286700 chr7D 82.317 492 41 19 1015 1464 493559816 493560303 5.790000e-103 385.0
11 TraesCS7B01G286700 chr7D 86.232 276 21 12 663 937 491877573 491877314 2.170000e-72 283.0
12 TraesCS7B01G286700 chr7A 93.383 1466 66 16 1417 2856 559361710 559363170 0.000000e+00 2141.0
13 TraesCS7B01G286700 chr7A 89.943 1412 94 28 1506 2881 558109916 558108517 0.000000e+00 1777.0
14 TraesCS7B01G286700 chr7A 92.169 945 53 9 2751 3676 559388366 559389308 0.000000e+00 1315.0
15 TraesCS7B01G286700 chr7A 93.720 828 49 1 1510 2334 559386882 559387709 0.000000e+00 1238.0
16 TraesCS7B01G286700 chr7A 85.767 808 63 35 547 1339 559360903 559361673 0.000000e+00 808.0
17 TraesCS7B01G286700 chr7A 87.555 683 47 25 663 1339 558110824 558110174 0.000000e+00 756.0
18 TraesCS7B01G286700 chr7A 92.333 300 21 2 2404 2702 559388066 559388364 3.410000e-115 425.0
19 TraesCS7B01G286700 chr7A 81.425 393 41 15 1015 1384 559385859 559386242 3.610000e-75 292.0
20 TraesCS7B01G286700 chr7A 85.915 142 16 3 144 283 559360474 559360613 8.270000e-32 148.0
21 TraesCS7B01G286700 chr6A 83.111 823 128 9 1511 2329 564975151 564975966 0.000000e+00 739.0
22 TraesCS7B01G286700 chr4D 83.088 136 21 2 1190 1324 455693547 455693681 5.010000e-24 122.0
23 TraesCS7B01G286700 chr3B 81.148 122 18 2 1 121 564312286 564312403 3.930000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G286700 chr7B 522140585 522144280 3695 False 6826.000000 6826 100.000000 1 3696 1 chr7B.!!$F1 3695
1 TraesCS7B01G286700 chr7B 521149211 521151507 2296 True 1314.500000 1799 89.750000 663 2881 2 chr7B.!!$R1 2218
2 TraesCS7B01G286700 chr7B 521195824 521198146 2322 True 1262.000000 1805 87.008000 663 2881 2 chr7B.!!$R2 2218
3 TraesCS7B01G286700 chr7D 493202374 493205072 2698 False 3358.000000 3358 89.337000 144 2856 1 chr7D.!!$F1 2712
4 TraesCS7B01G286700 chr7D 493559816 493562868 3052 False 1097.333333 1869 88.288667 1015 3696 3 chr7D.!!$F2 2681
5 TraesCS7B01G286700 chr7D 491871971 491877573 5602 True 913.333333 1784 89.301333 663 2881 3 chr7D.!!$R1 2218
6 TraesCS7B01G286700 chr7A 558108517 558110824 2307 True 1266.500000 1777 88.749000 663 2881 2 chr7A.!!$R1 2218
7 TraesCS7B01G286700 chr7A 559360474 559363170 2696 False 1032.333333 2141 88.355000 144 2856 3 chr7A.!!$F1 2712
8 TraesCS7B01G286700 chr7A 559385859 559389308 3449 False 817.500000 1315 89.911750 1015 3676 4 chr7A.!!$F2 2661
9 TraesCS7B01G286700 chr6A 564975151 564975966 815 False 739.000000 739 83.111000 1511 2329 1 chr6A.!!$F1 818

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
898 1033 0.108709 AAATACGAAGCCGCGGTACA 60.109 50.0 28.70 6.74 39.95 2.90 F
937 1072 0.321919 TCAGCCAGTCAGCCAATCAC 60.322 55.0 0.00 0.00 0.00 3.06 F
2347 6410 0.467384 TAAGCAGATGAGCCAGCTCC 59.533 55.0 16.69 2.67 42.09 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2506 6860 1.279846 TGCATGAGGATCTTGAGTGCA 59.720 47.619 0.0 8.49 42.34 4.57 R
2632 6986 2.732094 GCGTAGTCGTTGCCGTGT 60.732 61.111 0.0 0.00 39.49 4.49 R
3259 7770 0.388520 GGATTTCACCGTTTGCCAGC 60.389 55.000 0.0 0.00 0.00 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.492418 AATCGCCCGATTTGCATGT 58.508 47.368 9.88 0.00 41.55 3.21
29 30 1.674359 AATCGCCCGATTTGCATGTA 58.326 45.000 9.88 0.00 41.55 2.29
30 31 1.674359 ATCGCCCGATTTGCATGTAA 58.326 45.000 0.00 0.00 0.00 2.41
31 32 1.674359 TCGCCCGATTTGCATGTAAT 58.326 45.000 0.00 0.00 0.00 1.89
32 33 2.020720 TCGCCCGATTTGCATGTAATT 58.979 42.857 0.00 0.00 0.00 1.40
33 34 2.425312 TCGCCCGATTTGCATGTAATTT 59.575 40.909 0.00 0.00 0.00 1.82
34 35 2.535166 CGCCCGATTTGCATGTAATTTG 59.465 45.455 0.00 0.00 0.00 2.32
35 36 2.284952 GCCCGATTTGCATGTAATTTGC 59.715 45.455 0.00 0.00 40.55 3.68
36 37 2.865551 CCCGATTTGCATGTAATTTGCC 59.134 45.455 0.00 0.00 39.39 4.52
37 38 3.430651 CCCGATTTGCATGTAATTTGCCT 60.431 43.478 0.00 0.00 39.39 4.75
38 39 4.202101 CCCGATTTGCATGTAATTTGCCTA 60.202 41.667 0.00 0.00 39.39 3.93
39 40 5.347342 CCGATTTGCATGTAATTTGCCTAA 58.653 37.500 0.00 0.00 39.39 2.69
40 41 5.984926 CCGATTTGCATGTAATTTGCCTAAT 59.015 36.000 0.00 0.00 39.39 1.73
41 42 6.479660 CCGATTTGCATGTAATTTGCCTAATT 59.520 34.615 0.00 0.40 39.39 1.40
42 43 7.011295 CCGATTTGCATGTAATTTGCCTAATTT 59.989 33.333 0.00 0.00 39.39 1.82
43 44 9.029243 CGATTTGCATGTAATTTGCCTAATTTA 57.971 29.630 0.00 0.00 39.39 1.40
47 48 9.881649 TTGCATGTAATTTGCCTAATTTATTGA 57.118 25.926 0.00 0.00 39.39 2.57
48 49 9.881649 TGCATGTAATTTGCCTAATTTATTGAA 57.118 25.926 0.00 0.00 39.39 2.69
55 56 8.947055 ATTTGCCTAATTTATTGAAATTCGCT 57.053 26.923 12.54 0.00 42.91 4.93
56 57 8.770438 TTTGCCTAATTTATTGAAATTCGCTT 57.230 26.923 12.54 0.00 42.91 4.68
57 58 8.770438 TTGCCTAATTTATTGAAATTCGCTTT 57.230 26.923 12.54 0.00 42.91 3.51
58 59 8.183830 TGCCTAATTTATTGAAATTCGCTTTG 57.816 30.769 12.54 0.00 42.91 2.77
59 60 8.031864 TGCCTAATTTATTGAAATTCGCTTTGA 58.968 29.630 12.54 0.00 42.91 2.69
60 61 8.868916 GCCTAATTTATTGAAATTCGCTTTGAA 58.131 29.630 0.00 0.00 42.91 2.69
68 69 6.630676 TGAAATTCGCTTTGAAATGTATGC 57.369 33.333 0.00 0.00 40.71 3.14
69 70 5.285845 TGAAATTCGCTTTGAAATGTATGCG 59.714 36.000 2.62 2.62 40.71 4.73
70 71 2.823196 TCGCTTTGAAATGTATGCGG 57.177 45.000 8.30 0.00 43.00 5.69
71 72 1.191096 CGCTTTGAAATGTATGCGGC 58.809 50.000 1.23 0.00 39.76 6.53
72 73 1.202177 CGCTTTGAAATGTATGCGGCT 60.202 47.619 0.00 0.00 39.76 5.52
73 74 2.187707 GCTTTGAAATGTATGCGGCTG 58.812 47.619 0.00 0.00 0.00 4.85
74 75 2.415893 GCTTTGAAATGTATGCGGCTGT 60.416 45.455 0.00 0.00 0.00 4.40
75 76 3.181501 GCTTTGAAATGTATGCGGCTGTA 60.182 43.478 0.00 0.00 0.00 2.74
76 77 4.674101 GCTTTGAAATGTATGCGGCTGTAA 60.674 41.667 0.00 0.00 0.00 2.41
77 78 5.574891 TTTGAAATGTATGCGGCTGTAAT 57.425 34.783 0.00 0.00 0.00 1.89
78 79 5.574891 TTGAAATGTATGCGGCTGTAATT 57.425 34.783 0.00 0.00 0.00 1.40
79 80 4.919206 TGAAATGTATGCGGCTGTAATTG 58.081 39.130 0.00 0.00 0.00 2.32
80 81 4.637977 TGAAATGTATGCGGCTGTAATTGA 59.362 37.500 0.00 0.00 0.00 2.57
81 82 5.124617 TGAAATGTATGCGGCTGTAATTGAA 59.875 36.000 0.00 0.00 0.00 2.69
82 83 5.772825 AATGTATGCGGCTGTAATTGAAT 57.227 34.783 0.00 0.00 0.00 2.57
83 84 4.550577 TGTATGCGGCTGTAATTGAATG 57.449 40.909 0.00 0.00 0.00 2.67
84 85 3.314913 TGTATGCGGCTGTAATTGAATGG 59.685 43.478 0.00 0.00 0.00 3.16
85 86 0.455410 TGCGGCTGTAATTGAATGGC 59.545 50.000 0.00 0.00 0.00 4.40
86 87 0.249031 GCGGCTGTAATTGAATGGCC 60.249 55.000 0.00 0.00 36.60 5.36
87 88 3.944871 GGCTGTAATTGAATGGCCG 57.055 52.632 0.00 0.00 0.00 6.13
88 89 0.385390 GGCTGTAATTGAATGGCCGG 59.615 55.000 0.00 0.00 0.00 6.13
89 90 0.249031 GCTGTAATTGAATGGCCGGC 60.249 55.000 21.18 21.18 0.00 6.13
90 91 1.392589 CTGTAATTGAATGGCCGGCT 58.607 50.000 28.56 6.33 0.00 5.52
91 92 1.334869 CTGTAATTGAATGGCCGGCTC 59.665 52.381 28.56 17.20 0.00 4.70
92 93 0.668535 GTAATTGAATGGCCGGCTCC 59.331 55.000 28.56 11.61 0.00 4.70
93 94 0.467290 TAATTGAATGGCCGGCTCCC 60.467 55.000 28.56 10.74 0.00 4.30
103 104 4.457496 CGGCTCCCGCATCAGTGT 62.457 66.667 0.00 0.00 41.17 3.55
104 105 2.821366 GGCTCCCGCATCAGTGTG 60.821 66.667 0.00 0.00 38.10 3.82
105 106 3.503363 GCTCCCGCATCAGTGTGC 61.503 66.667 7.40 7.40 41.65 4.57
111 112 4.152625 GCATCAGTGTGCGCGGAC 62.153 66.667 24.88 24.88 35.10 4.79
112 113 2.433145 CATCAGTGTGCGCGGACT 60.433 61.111 30.67 9.72 0.00 3.85
113 114 2.433145 ATCAGTGTGCGCGGACTG 60.433 61.111 30.67 25.21 40.89 3.51
114 115 3.601685 TCAGTGTGCGCGGACTGA 61.602 61.111 30.67 28.12 44.99 3.41
115 116 2.433145 CAGTGTGCGCGGACTGAT 60.433 61.111 30.67 14.15 41.90 2.90
116 117 2.029288 CAGTGTGCGCGGACTGATT 61.029 57.895 30.67 11.24 41.90 2.57
117 118 1.301716 AGTGTGCGCGGACTGATTT 60.302 52.632 30.67 9.47 0.00 2.17
118 119 1.132640 GTGTGCGCGGACTGATTTC 59.867 57.895 30.67 10.79 0.00 2.17
119 120 2.032634 TGTGCGCGGACTGATTTCC 61.033 57.895 30.67 2.72 0.00 3.13
127 128 1.087501 GGACTGATTTCCGCTGTTCC 58.912 55.000 0.00 0.00 0.00 3.62
128 129 0.721718 GACTGATTTCCGCTGTTCCG 59.278 55.000 0.00 0.00 0.00 4.30
129 130 1.298859 ACTGATTTCCGCTGTTCCGC 61.299 55.000 0.00 0.00 0.00 5.54
137 138 2.125512 GCTGTTCCGCGGACAGAT 60.126 61.111 38.66 0.00 33.65 2.90
138 139 2.456119 GCTGTTCCGCGGACAGATG 61.456 63.158 38.66 25.39 33.65 2.90
139 140 2.434185 TGTTCCGCGGACAGATGC 60.434 61.111 31.19 14.07 0.00 3.91
145 146 3.188786 GCGGACAGATGCGGTGTC 61.189 66.667 4.70 4.70 43.12 3.67
155 156 4.126437 CAGATGCGGTGTCCATGTAATAA 58.874 43.478 0.00 0.00 0.00 1.40
166 167 4.449068 GTCCATGTAATAATCCGACAGCAG 59.551 45.833 0.00 0.00 0.00 4.24
171 172 1.112113 ATAATCCGACAGCAGGACGT 58.888 50.000 0.00 0.00 41.10 4.34
196 197 4.095334 GGTGTAAACAACCTCTCGTGTTTT 59.905 41.667 7.05 0.00 36.17 2.43
279 282 1.337260 ACTGTCTCTGTCACATTCGCC 60.337 52.381 0.00 0.00 0.00 5.54
284 287 1.191489 TCTGTCACATTCGCCCTCCA 61.191 55.000 0.00 0.00 0.00 3.86
312 315 1.657487 AAGTCACGCGACACTGACG 60.657 57.895 15.93 0.00 45.23 4.35
343 346 4.175489 CCTCCGATGCGTCGTCGT 62.175 66.667 25.56 0.00 46.25 4.34
367 370 3.020984 ACACACACCAAAAACCTTCGAT 58.979 40.909 0.00 0.00 0.00 3.59
412 415 2.029964 TCGTTCTCCACCGTTGGC 59.970 61.111 0.00 0.00 43.56 4.52
440 443 2.420687 GCCCAAATAGGAGTGTCCTCTG 60.421 54.545 0.00 0.00 45.66 3.35
452 455 5.279006 GGAGTGTCCTCTGATGCGATATTTA 60.279 44.000 0.00 0.00 37.86 1.40
507 512 3.473093 CAGATCTGTTCTGCAAGCAAG 57.527 47.619 14.95 0.00 45.16 4.01
508 513 2.812591 CAGATCTGTTCTGCAAGCAAGT 59.187 45.455 14.95 0.00 45.16 3.16
509 514 3.072944 AGATCTGTTCTGCAAGCAAGTC 58.927 45.455 0.00 0.00 31.79 3.01
510 515 1.597742 TCTGTTCTGCAAGCAAGTCC 58.402 50.000 0.00 0.00 0.00 3.85
511 516 1.134128 TCTGTTCTGCAAGCAAGTCCA 60.134 47.619 0.00 0.00 0.00 4.02
512 517 1.884579 CTGTTCTGCAAGCAAGTCCAT 59.115 47.619 0.00 0.00 0.00 3.41
513 518 2.295349 CTGTTCTGCAAGCAAGTCCATT 59.705 45.455 0.00 0.00 0.00 3.16
514 519 2.034939 TGTTCTGCAAGCAAGTCCATTG 59.965 45.455 0.00 0.00 42.20 2.82
515 520 1.250328 TCTGCAAGCAAGTCCATTGG 58.750 50.000 0.00 0.00 39.47 3.16
516 521 1.202915 TCTGCAAGCAAGTCCATTGGA 60.203 47.619 0.00 0.00 39.47 3.53
524 529 3.134127 GTCCATTGGACGGCAGGC 61.134 66.667 19.65 0.00 43.14 4.85
525 530 4.776322 TCCATTGGACGGCAGGCG 62.776 66.667 16.06 16.06 0.00 5.52
555 676 4.630069 AGTCGTACAGATACATTTTGCACC 59.370 41.667 0.00 0.00 0.00 5.01
568 689 3.423154 GCACCGAGTTTCCTGCCG 61.423 66.667 0.00 0.00 0.00 5.69
646 772 1.468520 CGCCCATGCTTATATTTCCCG 59.531 52.381 0.00 0.00 34.43 5.14
665 791 4.018779 TCCCGTTGGAAAATCAGTTATCCT 60.019 41.667 0.00 0.00 37.86 3.24
721 847 3.941483 ACTTGGATGGTGCTATCTTTTCG 59.059 43.478 0.00 0.00 0.00 3.46
826 961 2.639286 CAAGCAACACTCCACGGC 59.361 61.111 0.00 0.00 0.00 5.68
855 990 5.514279 ACGTATAGCTCGCGTTAAATACTT 58.486 37.500 5.77 2.18 35.11 2.24
856 991 5.973565 ACGTATAGCTCGCGTTAAATACTTT 59.026 36.000 5.77 0.00 35.11 2.66
857 992 6.075205 ACGTATAGCTCGCGTTAAATACTTTG 60.075 38.462 5.77 2.06 35.11 2.77
858 993 6.141211 CGTATAGCTCGCGTTAAATACTTTGA 59.859 38.462 5.77 0.00 0.00 2.69
859 994 4.842139 AGCTCGCGTTAAATACTTTGAG 57.158 40.909 5.77 0.00 0.00 3.02
885 1020 4.824848 GCATCGACTGCCTATAAATACG 57.175 45.455 8.17 0.00 45.66 3.06
890 1025 3.673809 CGACTGCCTATAAATACGAAGCC 59.326 47.826 0.00 0.00 0.00 4.35
891 1026 3.650139 ACTGCCTATAAATACGAAGCCG 58.350 45.455 0.00 0.00 42.50 5.52
892 1027 2.409975 TGCCTATAAATACGAAGCCGC 58.590 47.619 0.00 0.00 39.95 6.53
893 1028 1.389106 GCCTATAAATACGAAGCCGCG 59.611 52.381 0.00 0.00 39.95 6.46
895 1030 2.608752 CCTATAAATACGAAGCCGCGGT 60.609 50.000 28.70 7.71 39.95 5.68
897 1032 1.838913 TAAATACGAAGCCGCGGTAC 58.161 50.000 28.70 16.79 39.95 3.34
898 1033 0.108709 AAATACGAAGCCGCGGTACA 60.109 50.000 28.70 6.74 39.95 2.90
899 1034 0.803380 AATACGAAGCCGCGGTACAC 60.803 55.000 28.70 10.05 39.95 2.90
900 1035 1.660560 ATACGAAGCCGCGGTACACT 61.661 55.000 28.70 12.59 39.95 3.55
902 1037 2.442188 CGAAGCCGCGGTACACTTC 61.442 63.158 28.70 26.32 36.11 3.01
903 1038 1.080025 GAAGCCGCGGTACACTTCT 60.080 57.895 28.70 10.48 36.45 2.85
937 1072 0.321919 TCAGCCAGTCAGCCAATCAC 60.322 55.000 0.00 0.00 0.00 3.06
941 4362 1.735386 CCAGTCAGCCAATCACTCAG 58.265 55.000 0.00 0.00 0.00 3.35
945 4366 2.369860 AGTCAGCCAATCACTCAGTCAA 59.630 45.455 0.00 0.00 0.00 3.18
963 4384 2.296471 TCAACCGGAGAAGAAGAGTGAC 59.704 50.000 9.46 0.00 0.00 3.67
1050 4474 2.047179 TCTCTGCTGCTGCTGCTG 60.047 61.111 27.67 26.32 40.48 4.41
1262 4746 3.642778 ATGGGCAAGGTCGACGACG 62.643 63.158 20.92 9.24 41.26 5.12
1339 4823 2.060980 CCAAGGTCCTCCTCCTCCG 61.061 68.421 0.00 0.00 44.35 4.63
1401 4889 5.241506 TCAACATCTAGAGGCAACCAAAAAG 59.758 40.000 3.87 0.00 37.17 2.27
1402 4890 4.985538 ACATCTAGAGGCAACCAAAAAGA 58.014 39.130 3.87 0.00 37.17 2.52
1451 4955 4.260990 CGTGGACAACATGCTAAGTTTGAA 60.261 41.667 0.00 0.00 0.00 2.69
1816 5879 4.891727 GCGCCCGACATCGACCAT 62.892 66.667 2.09 0.00 43.02 3.55
2347 6410 0.467384 TAAGCAGATGAGCCAGCTCC 59.533 55.000 16.69 2.67 42.09 4.70
2708 7062 2.362169 GAGCTGAAGTCTCCACTGAC 57.638 55.000 0.00 0.00 37.23 3.51
2710 7064 0.389166 GCTGAAGTCTCCACTGACCG 60.389 60.000 0.00 0.00 37.66 4.79
2712 7066 0.178973 TGAAGTCTCCACTGACCGGA 60.179 55.000 9.46 0.00 37.66 5.14
2718 7072 3.615597 TCCACTGACCGGAGATGAT 57.384 52.632 9.46 0.00 0.00 2.45
2719 7073 1.403814 TCCACTGACCGGAGATGATC 58.596 55.000 9.46 0.00 0.00 2.92
2721 7075 1.068281 CCACTGACCGGAGATGATCTG 59.932 57.143 9.46 0.00 0.00 2.90
2763 7154 3.811722 ACACACACGCAGATATTGTTG 57.188 42.857 0.00 0.00 0.00 3.33
2824 7215 1.542472 TCTACGAATGGCTCACACGAA 59.458 47.619 0.00 0.00 0.00 3.85
3059 7565 3.807071 CCAAAATGGCGGCCAATTATTAC 59.193 43.478 27.70 0.00 36.95 1.89
3091 7597 6.770286 TCTCCAAAGGATAGCCTCAAATAT 57.230 37.500 0.00 0.00 46.28 1.28
3138 7644 6.490040 AGTTTTGTTACATTGCATCCTACACT 59.510 34.615 0.00 0.00 0.00 3.55
3166 7672 3.006247 GAGGAACCAGCAGAATGAAGAC 58.994 50.000 0.00 0.00 39.69 3.01
3205 7711 1.475403 CGGAGAGGCTCTACCAAAGA 58.525 55.000 21.00 0.00 43.14 2.52
3212 7718 4.287067 AGAGGCTCTACCAAAGAAACATGA 59.713 41.667 17.09 0.00 43.14 3.07
3213 7719 5.045286 AGAGGCTCTACCAAAGAAACATGAT 60.045 40.000 17.09 0.00 43.14 2.45
3215 7721 6.116126 AGGCTCTACCAAAGAAACATGATAC 58.884 40.000 0.00 0.00 43.14 2.24
3219 7726 7.011482 GCTCTACCAAAGAAACATGATACGAAT 59.989 37.037 0.00 0.00 32.46 3.34
3221 7728 6.106877 ACCAAAGAAACATGATACGAATCG 57.893 37.500 0.00 0.00 34.60 3.34
3263 7774 3.414272 GCGTTAGGCATGAGCTGG 58.586 61.111 0.00 0.00 42.87 4.85
3340 7860 4.392138 GCCGGAAGTAATAGATTACATGCC 59.608 45.833 5.05 10.15 43.83 4.40
3346 7866 2.859165 ATAGATTACATGCCCCCACG 57.141 50.000 0.00 0.00 0.00 4.94
3370 7891 6.752815 CGTTTTTCTCTATTCTACTCCAGGAC 59.247 42.308 0.00 0.00 0.00 3.85
3373 7894 7.411486 TTTCTCTATTCTACTCCAGGACTTG 57.589 40.000 0.00 0.00 0.00 3.16
3383 7905 3.711704 ACTCCAGGACTTGAGAGAACAAA 59.288 43.478 7.35 0.00 32.03 2.83
3384 7906 4.349342 ACTCCAGGACTTGAGAGAACAAAT 59.651 41.667 7.35 0.00 32.03 2.32
3414 7936 2.357760 TTGGGACGCTTGCGGTAC 60.358 61.111 19.19 9.68 0.00 3.34
3483 8005 2.465860 TCATGTTCCTAACCACACCG 57.534 50.000 0.00 0.00 0.00 4.94
3572 8094 2.093021 TCGATGCAAATCCATGGACTCA 60.093 45.455 18.99 12.66 0.00 3.41
3599 8121 6.524101 AGAGTTTAAACCAAAAGAGCAACA 57.476 33.333 14.72 0.00 0.00 3.33
3687 8209 9.778993 CGATGTTATCAAGATGAGTGAAATTTT 57.221 29.630 0.00 0.00 0.00 1.82
3695 8217 9.388506 TCAAGATGAGTGAAATTTTCTAGATCC 57.611 33.333 10.33 0.00 0.00 3.36
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 8.122633 ATGCAAATCGGGCGATTTTCATCTAA 62.123 38.462 16.96 1.71 46.99 2.10
2 3 6.718699 ATGCAAATCGGGCGATTTTCATCTA 61.719 40.000 16.96 1.96 46.99 1.98
3 4 5.998189 ATGCAAATCGGGCGATTTTCATCT 61.998 41.667 16.96 5.23 46.99 2.90
4 5 3.796504 ATGCAAATCGGGCGATTTTCATC 60.797 43.478 16.96 8.63 46.99 2.92
10 11 1.674359 TACATGCAAATCGGGCGATT 58.326 45.000 0.00 0.00 45.67 3.34
11 12 1.674359 TTACATGCAAATCGGGCGAT 58.326 45.000 0.00 0.00 36.23 4.58
12 13 1.674359 ATTACATGCAAATCGGGCGA 58.326 45.000 0.00 0.00 0.00 5.54
13 14 2.490328 AATTACATGCAAATCGGGCG 57.510 45.000 0.00 0.00 0.00 6.13
14 15 2.284952 GCAAATTACATGCAAATCGGGC 59.715 45.455 0.00 0.00 43.29 6.13
15 16 2.865551 GGCAAATTACATGCAAATCGGG 59.134 45.455 3.19 0.00 45.60 5.14
16 17 3.784338 AGGCAAATTACATGCAAATCGG 58.216 40.909 3.19 0.00 45.60 4.18
17 18 7.467557 AATTAGGCAAATTACATGCAAATCG 57.532 32.000 3.19 0.00 45.60 3.34
21 22 9.881649 TCAATAAATTAGGCAAATTACATGCAA 57.118 25.926 3.19 0.00 45.60 4.08
22 23 9.881649 TTCAATAAATTAGGCAAATTACATGCA 57.118 25.926 3.19 0.00 45.60 3.96
29 30 9.382275 AGCGAATTTCAATAAATTAGGCAAATT 57.618 25.926 15.50 0.00 43.69 1.82
30 31 8.947055 AGCGAATTTCAATAAATTAGGCAAAT 57.053 26.923 15.50 0.00 43.69 2.32
31 32 8.770438 AAGCGAATTTCAATAAATTAGGCAAA 57.230 26.923 15.50 0.00 43.69 3.68
32 33 8.655092 CAAAGCGAATTTCAATAAATTAGGCAA 58.345 29.630 15.50 0.00 43.69 4.52
33 34 8.031864 TCAAAGCGAATTTCAATAAATTAGGCA 58.968 29.630 15.50 0.77 43.69 4.75
34 35 8.406172 TCAAAGCGAATTTCAATAAATTAGGC 57.594 30.769 9.39 9.39 43.69 3.93
42 43 8.806634 GCATACATTTCAAAGCGAATTTCAATA 58.193 29.630 0.00 0.00 32.32 1.90
43 44 7.678226 GCATACATTTCAAAGCGAATTTCAAT 58.322 30.769 0.00 0.00 32.32 2.57
44 45 7.048000 GCATACATTTCAAAGCGAATTTCAA 57.952 32.000 0.00 0.00 32.32 2.69
45 46 6.630676 GCATACATTTCAAAGCGAATTTCA 57.369 33.333 0.00 0.00 32.32 2.69
52 53 1.191096 GCCGCATACATTTCAAAGCG 58.809 50.000 0.00 0.00 44.24 4.68
53 54 2.187707 CAGCCGCATACATTTCAAAGC 58.812 47.619 0.00 0.00 0.00 3.51
54 55 3.492421 ACAGCCGCATACATTTCAAAG 57.508 42.857 0.00 0.00 0.00 2.77
55 56 5.574891 ATTACAGCCGCATACATTTCAAA 57.425 34.783 0.00 0.00 0.00 2.69
56 57 5.124617 TCAATTACAGCCGCATACATTTCAA 59.875 36.000 0.00 0.00 0.00 2.69
57 58 4.637977 TCAATTACAGCCGCATACATTTCA 59.362 37.500 0.00 0.00 0.00 2.69
58 59 5.168526 TCAATTACAGCCGCATACATTTC 57.831 39.130 0.00 0.00 0.00 2.17
59 60 5.574891 TTCAATTACAGCCGCATACATTT 57.425 34.783 0.00 0.00 0.00 2.32
60 61 5.507817 CCATTCAATTACAGCCGCATACATT 60.508 40.000 0.00 0.00 0.00 2.71
61 62 4.022935 CCATTCAATTACAGCCGCATACAT 60.023 41.667 0.00 0.00 0.00 2.29
62 63 3.314913 CCATTCAATTACAGCCGCATACA 59.685 43.478 0.00 0.00 0.00 2.29
63 64 3.853307 GCCATTCAATTACAGCCGCATAC 60.853 47.826 0.00 0.00 0.00 2.39
64 65 2.293122 GCCATTCAATTACAGCCGCATA 59.707 45.455 0.00 0.00 0.00 3.14
65 66 1.067516 GCCATTCAATTACAGCCGCAT 59.932 47.619 0.00 0.00 0.00 4.73
66 67 0.455410 GCCATTCAATTACAGCCGCA 59.545 50.000 0.00 0.00 0.00 5.69
67 68 0.249031 GGCCATTCAATTACAGCCGC 60.249 55.000 0.00 0.00 0.00 6.53
68 69 3.944871 GGCCATTCAATTACAGCCG 57.055 52.632 0.00 0.00 0.00 5.52
69 70 0.385390 CCGGCCATTCAATTACAGCC 59.615 55.000 2.24 0.00 37.03 4.85
70 71 0.249031 GCCGGCCATTCAATTACAGC 60.249 55.000 18.11 0.00 0.00 4.40
71 72 1.334869 GAGCCGGCCATTCAATTACAG 59.665 52.381 26.15 0.00 0.00 2.74
72 73 1.388547 GAGCCGGCCATTCAATTACA 58.611 50.000 26.15 0.00 0.00 2.41
73 74 0.668535 GGAGCCGGCCATTCAATTAC 59.331 55.000 26.15 0.00 0.00 1.89
74 75 0.467290 GGGAGCCGGCCATTCAATTA 60.467 55.000 26.15 0.00 0.00 1.40
75 76 1.758122 GGGAGCCGGCCATTCAATT 60.758 57.895 26.15 0.00 0.00 2.32
76 77 2.123726 GGGAGCCGGCCATTCAAT 60.124 61.111 26.15 0.94 0.00 2.57
77 78 4.794648 CGGGAGCCGGCCATTCAA 62.795 66.667 26.15 0.00 44.15 2.69
94 95 4.152625 GTCCGCGCACACTGATGC 62.153 66.667 8.75 0.00 42.48 3.91
95 96 2.433145 AGTCCGCGCACACTGATG 60.433 61.111 8.75 0.00 0.00 3.07
96 97 2.433145 CAGTCCGCGCACACTGAT 60.433 61.111 24.75 0.00 42.37 2.90
97 98 3.601685 TCAGTCCGCGCACACTGA 61.602 61.111 26.62 26.62 45.45 3.41
98 99 1.568612 AAATCAGTCCGCGCACACTG 61.569 55.000 23.58 23.58 41.32 3.66
99 100 1.291877 GAAATCAGTCCGCGCACACT 61.292 55.000 8.75 5.12 0.00 3.55
100 101 1.132640 GAAATCAGTCCGCGCACAC 59.867 57.895 8.75 2.26 0.00 3.82
101 102 2.032634 GGAAATCAGTCCGCGCACA 61.033 57.895 8.75 0.00 0.00 4.57
102 103 2.785258 GGAAATCAGTCCGCGCAC 59.215 61.111 8.75 0.00 0.00 5.34
108 109 1.087501 GGAACAGCGGAAATCAGTCC 58.912 55.000 0.00 0.00 0.00 3.85
109 110 0.721718 CGGAACAGCGGAAATCAGTC 59.278 55.000 0.00 0.00 0.00 3.51
110 111 1.298859 GCGGAACAGCGGAAATCAGT 61.299 55.000 0.00 0.00 0.00 3.41
111 112 1.425428 GCGGAACAGCGGAAATCAG 59.575 57.895 0.00 0.00 0.00 2.90
112 113 3.573558 GCGGAACAGCGGAAATCA 58.426 55.556 0.00 0.00 0.00 2.57
120 121 2.125512 ATCTGTCCGCGGAACAGC 60.126 61.111 34.01 23.54 33.10 4.40
121 122 2.456119 GCATCTGTCCGCGGAACAG 61.456 63.158 33.49 33.49 33.10 3.16
122 123 2.434185 GCATCTGTCCGCGGAACA 60.434 61.111 32.93 26.73 33.10 3.18
128 129 3.188786 GACACCGCATCTGTCCGC 61.189 66.667 0.00 0.00 33.23 5.54
129 130 2.509336 GGACACCGCATCTGTCCG 60.509 66.667 8.31 0.00 46.38 4.79
131 132 0.391661 ACATGGACACCGCATCTGTC 60.392 55.000 0.00 0.00 37.84 3.51
132 133 0.901827 TACATGGACACCGCATCTGT 59.098 50.000 0.00 0.00 0.00 3.41
133 134 2.022764 TTACATGGACACCGCATCTG 57.977 50.000 0.00 0.00 0.00 2.90
134 135 4.415881 TTATTACATGGACACCGCATCT 57.584 40.909 0.00 0.00 0.00 2.90
135 136 4.154195 GGATTATTACATGGACACCGCATC 59.846 45.833 0.00 0.00 0.00 3.91
136 137 4.072131 GGATTATTACATGGACACCGCAT 58.928 43.478 0.00 0.00 0.00 4.73
137 138 3.472652 GGATTATTACATGGACACCGCA 58.527 45.455 0.00 0.00 0.00 5.69
138 139 2.478894 CGGATTATTACATGGACACCGC 59.521 50.000 0.00 0.00 0.00 5.68
139 140 3.739300 GTCGGATTATTACATGGACACCG 59.261 47.826 0.00 0.00 39.30 4.94
140 141 4.699637 TGTCGGATTATTACATGGACACC 58.300 43.478 0.00 0.00 0.00 4.16
141 142 4.211374 GCTGTCGGATTATTACATGGACAC 59.789 45.833 0.00 0.00 0.00 3.67
142 143 4.141824 TGCTGTCGGATTATTACATGGACA 60.142 41.667 0.00 0.00 0.00 4.02
145 146 3.748048 CCTGCTGTCGGATTATTACATGG 59.252 47.826 0.00 0.00 0.00 3.66
155 156 1.079819 CAACGTCCTGCTGTCGGAT 60.080 57.895 0.00 0.00 32.25 4.18
166 167 2.288729 GAGGTTGTTTACACCAACGTCC 59.711 50.000 12.48 0.32 45.22 4.79
171 172 3.199677 CACGAGAGGTTGTTTACACCAA 58.800 45.455 0.00 0.00 0.00 3.67
196 197 1.537348 GGCCGTACATTATCGTCAGCA 60.537 52.381 0.00 0.00 0.00 4.41
279 282 2.121948 TGACTTGGATGGAGATGGAGG 58.878 52.381 0.00 0.00 0.00 4.30
284 287 0.179100 CGCGTGACTTGGATGGAGAT 60.179 55.000 0.00 0.00 0.00 2.75
312 315 2.202946 GAGGAAGCTAGCCGTGCC 60.203 66.667 12.13 7.86 0.00 5.01
318 321 1.663074 CGCATCGGAGGAAGCTAGC 60.663 63.158 6.62 6.62 34.81 3.42
343 346 3.127203 CGAAGGTTTTTGGTGTGTGTACA 59.873 43.478 0.00 0.00 0.00 2.90
367 370 7.260603 CCGTAGATGAATGATGTGCAGATATA 58.739 38.462 0.00 0.00 0.00 0.86
412 415 2.926778 CTCCTATTTGGGCTGAGGAG 57.073 55.000 2.54 2.54 46.84 3.69
440 443 6.073276 TGGTACAGCAACATAAATATCGCATC 60.073 38.462 0.00 0.00 0.00 3.91
452 455 5.300539 TGTTGTTAATGTGGTACAGCAACAT 59.699 36.000 6.86 2.98 43.35 2.71
508 513 4.776322 CGCCTGCCGTCCAATGGA 62.776 66.667 0.00 0.00 0.00 3.41
520 525 3.567478 TACGACTGCACACCGCCTG 62.567 63.158 0.00 0.00 41.33 4.85
521 526 3.299977 TACGACTGCACACCGCCT 61.300 61.111 0.00 0.00 41.33 5.52
522 527 3.110178 GTACGACTGCACACCGCC 61.110 66.667 0.00 0.00 41.33 6.13
523 528 2.355363 TGTACGACTGCACACCGC 60.355 61.111 0.00 0.00 42.89 5.68
524 529 0.109272 ATCTGTACGACTGCACACCG 60.109 55.000 0.00 0.00 0.00 4.94
525 530 2.094906 TGTATCTGTACGACTGCACACC 60.095 50.000 0.00 0.00 33.36 4.16
526 531 3.211803 TGTATCTGTACGACTGCACAC 57.788 47.619 0.00 0.00 33.36 3.82
527 532 4.450082 AATGTATCTGTACGACTGCACA 57.550 40.909 0.00 0.00 33.36 4.57
528 533 5.550981 CAAAATGTATCTGTACGACTGCAC 58.449 41.667 0.00 0.00 33.36 4.57
529 534 4.092821 GCAAAATGTATCTGTACGACTGCA 59.907 41.667 0.00 0.00 33.36 4.41
530 535 4.092821 TGCAAAATGTATCTGTACGACTGC 59.907 41.667 0.00 0.00 33.36 4.40
555 676 1.301401 TTCCACGGCAGGAAACTCG 60.301 57.895 5.99 0.00 44.38 4.18
585 706 9.638239 GAGGAAATTAATTGAACATAGTGCAAA 57.362 29.630 0.39 0.00 34.47 3.68
603 729 4.273318 CGAAGAAAGATGGGGAGGAAATT 58.727 43.478 0.00 0.00 0.00 1.82
646 772 8.803235 ACCTTTTAGGATAACTGATTTTCCAAC 58.197 33.333 0.00 0.00 38.15 3.77
665 791 2.156098 CAGCGTTGCCCTTACCTTTTA 58.844 47.619 0.00 0.00 0.00 1.52
721 847 0.741927 GGCTGGCACAAATTCCATGC 60.742 55.000 0.00 0.98 38.70 4.06
826 961 1.453524 ACGCGAGCTATACGTACGTAG 59.546 52.381 29.65 21.34 38.45 3.51
831 966 6.228273 AGTATTTAACGCGAGCTATACGTA 57.772 37.500 15.93 0.00 39.49 3.57
832 967 5.100751 AGTATTTAACGCGAGCTATACGT 57.899 39.130 15.93 2.58 42.81 3.57
833 968 6.141211 TCAAAGTATTTAACGCGAGCTATACG 59.859 38.462 15.93 0.00 35.03 3.06
834 969 7.385668 TCAAAGTATTTAACGCGAGCTATAC 57.614 36.000 15.93 14.55 35.03 1.47
835 970 6.143438 GCTCAAAGTATTTAACGCGAGCTATA 59.857 38.462 15.93 2.23 41.44 1.31
836 971 5.050972 GCTCAAAGTATTTAACGCGAGCTAT 60.051 40.000 15.93 3.30 41.44 2.97
855 990 2.771435 CAGTCGATGCCATGCTCAA 58.229 52.632 0.00 0.00 0.00 3.02
856 991 4.526770 CAGTCGATGCCATGCTCA 57.473 55.556 0.00 0.00 0.00 4.26
885 1020 0.669625 AAGAAGTGTACCGCGGCTTC 60.670 55.000 28.58 27.19 38.01 3.86
890 1025 0.108992 TGGCTAAGAAGTGTACCGCG 60.109 55.000 0.00 0.00 0.00 6.46
891 1026 2.202566 GATGGCTAAGAAGTGTACCGC 58.797 52.381 0.00 0.00 0.00 5.68
892 1027 3.119101 ACTGATGGCTAAGAAGTGTACCG 60.119 47.826 0.00 0.00 0.00 4.02
893 1028 4.434520 GACTGATGGCTAAGAAGTGTACC 58.565 47.826 0.00 0.00 0.00 3.34
895 1030 4.014406 TCGACTGATGGCTAAGAAGTGTA 58.986 43.478 0.00 0.00 0.00 2.90
897 1032 3.510388 TCGACTGATGGCTAAGAAGTG 57.490 47.619 0.00 0.00 0.00 3.16
898 1033 3.701542 TGATCGACTGATGGCTAAGAAGT 59.298 43.478 0.00 0.00 34.09 3.01
899 1034 4.297510 CTGATCGACTGATGGCTAAGAAG 58.702 47.826 0.00 0.00 34.09 2.85
900 1035 3.491619 GCTGATCGACTGATGGCTAAGAA 60.492 47.826 0.00 0.00 34.09 2.52
902 1037 2.402305 GCTGATCGACTGATGGCTAAG 58.598 52.381 0.00 0.00 34.09 2.18
903 1038 1.069204 GGCTGATCGACTGATGGCTAA 59.931 52.381 0.00 0.00 34.09 3.09
937 1072 2.558795 TCTTCTTCTCCGGTTGACTGAG 59.441 50.000 0.00 0.00 0.00 3.35
941 4362 2.296471 TCACTCTTCTTCTCCGGTTGAC 59.704 50.000 0.00 0.00 0.00 3.18
945 4366 1.203075 AGGTCACTCTTCTTCTCCGGT 60.203 52.381 0.00 0.00 0.00 5.28
963 4384 0.244721 TGTCGATCTCACAGCACAGG 59.755 55.000 0.00 0.00 0.00 4.00
1003 4427 0.675522 AGGTGGTTGCCGTTATTCCG 60.676 55.000 0.00 0.00 0.00 4.30
1008 4432 1.894756 GCACAGGTGGTTGCCGTTA 60.895 57.895 1.10 0.00 0.00 3.18
1339 4823 0.397957 GGAAGAGGGAGGGAGAGACC 60.398 65.000 0.00 0.00 38.08 3.85
1401 4889 4.393834 GCCTCTATGATTCCTTCCCTTTC 58.606 47.826 0.00 0.00 0.00 2.62
1402 4890 3.181450 CGCCTCTATGATTCCTTCCCTTT 60.181 47.826 0.00 0.00 0.00 3.11
1489 5538 1.392510 GCACCAAGTCGATCGGTTTAC 59.607 52.381 16.41 5.88 0.00 2.01
2014 6077 1.796151 CGCGTCCTGGTCGTAGTTA 59.204 57.895 14.41 0.00 0.00 2.24
2506 6860 1.279846 TGCATGAGGATCTTGAGTGCA 59.720 47.619 0.00 8.49 42.34 4.57
2632 6986 2.732094 GCGTAGTCGTTGCCGTGT 60.732 61.111 0.00 0.00 39.49 4.49
2708 7062 5.047448 ACAATGTAGATCAGATCATCTCCGG 60.047 44.000 13.14 0.00 34.75 5.14
2710 7064 6.014755 TGGACAATGTAGATCAGATCATCTCC 60.015 42.308 13.14 8.06 34.75 3.71
2712 7066 6.990908 TGGACAATGTAGATCAGATCATCT 57.009 37.500 13.14 0.00 36.97 2.90
2717 7071 5.996513 GCAGAATGGACAATGTAGATCAGAT 59.003 40.000 0.00 0.00 35.86 2.90
2718 7072 5.129980 AGCAGAATGGACAATGTAGATCAGA 59.870 40.000 0.00 0.00 35.86 3.27
2719 7073 5.366460 AGCAGAATGGACAATGTAGATCAG 58.634 41.667 0.00 0.00 35.86 2.90
2721 7075 6.201806 GTGTAGCAGAATGGACAATGTAGATC 59.798 42.308 0.00 0.00 35.86 2.75
2985 7491 6.116711 TGGCAGTGTCTTGGTATTACTAAA 57.883 37.500 0.00 0.00 0.00 1.85
2987 7493 5.423931 TCATGGCAGTGTCTTGGTATTACTA 59.576 40.000 10.41 0.00 0.00 1.82
3059 7565 9.225436 GAGGCTATCCTTTGGAGAATAATAAAG 57.775 37.037 0.00 0.00 44.46 1.85
3135 7641 3.419793 TGGTTCCTCCAGCAAAGTG 57.580 52.632 0.00 0.00 41.93 3.16
3166 7672 2.216750 CTCCCCAACTTGCAATGCGG 62.217 60.000 0.00 0.00 0.00 5.69
3205 7711 5.447279 GCCTGTTTCGATTCGTATCATGTTT 60.447 40.000 5.89 0.00 0.00 2.83
3212 7718 4.689071 TGTATGCCTGTTTCGATTCGTAT 58.311 39.130 5.89 0.00 0.00 3.06
3213 7719 4.112716 TGTATGCCTGTTTCGATTCGTA 57.887 40.909 5.89 0.00 0.00 3.43
3215 7721 3.124466 TGTTGTATGCCTGTTTCGATTCG 59.876 43.478 0.00 0.00 0.00 3.34
3219 7726 1.804151 GCTGTTGTATGCCTGTTTCGA 59.196 47.619 0.00 0.00 0.00 3.71
3221 7728 2.636768 GGCTGTTGTATGCCTGTTTC 57.363 50.000 0.00 0.00 45.26 2.78
3241 7752 1.802880 AGCTCATGCCTAACGCTAACG 60.803 52.381 0.00 0.00 42.53 3.18
3243 7754 1.473257 CCAGCTCATGCCTAACGCTAA 60.473 52.381 0.00 0.00 40.80 3.09
3259 7770 0.388520 GGATTTCACCGTTTGCCAGC 60.389 55.000 0.00 0.00 0.00 4.85
3263 7774 0.388520 GCTGGGATTTCACCGTTTGC 60.389 55.000 0.00 0.00 0.00 3.68
3269 7780 1.034292 GCTCTGGCTGGGATTTCACC 61.034 60.000 0.00 0.00 35.22 4.02
3340 7860 5.731591 AGTAGAATAGAGAAAAACGTGGGG 58.268 41.667 0.00 0.00 0.00 4.96
3346 7866 7.842982 AGTCCTGGAGTAGAATAGAGAAAAAC 58.157 38.462 1.14 0.00 0.00 2.43
3370 7891 6.566197 AAACCTAGCATTTGTTCTCTCAAG 57.434 37.500 0.00 0.00 0.00 3.02
3373 7894 7.674471 AGTAAAACCTAGCATTTGTTCTCTC 57.326 36.000 0.00 0.00 0.00 3.20
3383 7905 3.606687 CGTCCCAAGTAAAACCTAGCAT 58.393 45.455 0.00 0.00 0.00 3.79
3384 7906 2.872842 GCGTCCCAAGTAAAACCTAGCA 60.873 50.000 0.00 0.00 0.00 3.49
3414 7936 3.989104 GGATGACATCCTGTACCCG 57.011 57.895 24.77 0.00 46.19 5.28
3572 8094 9.529325 GTTGCTCTTTTGGTTTAAACTCTAATT 57.471 29.630 17.50 0.00 0.00 1.40
3599 8121 5.885912 ACAAGCCGATTTCATAACCAAGTAT 59.114 36.000 0.00 0.00 0.00 2.12


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.