Multiple sequence alignment - TraesCS7B01G286600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G286600 chr7B 100.000 6207 0 0 1 6207 522072455 522078661 0.000000e+00 11463.0
1 TraesCS7B01G286600 chr7B 100.000 1233 0 0 6566 7798 522079020 522080252 0.000000e+00 2278.0
2 TraesCS7B01G286600 chr7B 87.547 265 20 6 4100 4357 540063457 540063199 2.130000e-75 294.0
3 TraesCS7B01G286600 chr7A 91.931 3780 201 59 1751 5474 559200659 559204390 0.000000e+00 5195.0
4 TraesCS7B01G286600 chr7A 89.365 1448 64 40 284 1697 559199262 559200653 0.000000e+00 1738.0
5 TraesCS7B01G286600 chr7A 84.517 1253 102 34 6566 7769 559206253 559207462 0.000000e+00 1155.0
6 TraesCS7B01G286600 chr7A 86.438 553 26 10 5683 6207 559205723 559206254 1.900000e-155 560.0
7 TraesCS7B01G286600 chr7A 92.453 106 8 0 5492 5597 559205107 559205212 1.360000e-32 152.0
8 TraesCS7B01G286600 chr7A 89.583 96 10 0 1592 1687 624492379 624492474 1.060000e-23 122.0
9 TraesCS7B01G286600 chr7D 92.010 2353 121 27 2070 4397 492845357 492847667 0.000000e+00 3241.0
10 TraesCS7B01G286600 chr7D 92.219 1555 64 27 177 1697 492843447 492844978 0.000000e+00 2148.0
11 TraesCS7B01G286600 chr7D 87.018 1194 100 32 6566 7749 492850071 492851219 0.000000e+00 1295.0
12 TraesCS7B01G286600 chr7D 88.312 1001 80 18 4501 5472 492847894 492848886 0.000000e+00 1166.0
13 TraesCS7B01G286600 chr7D 91.667 744 39 12 5469 6207 492849347 492850072 0.000000e+00 1009.0
14 TraesCS7B01G286600 chr7D 90.358 363 24 7 1751 2103 492844984 492845345 4.260000e-127 466.0
15 TraesCS7B01G286600 chr7D 82.519 389 40 16 1 383 492842734 492843100 4.540000e-82 316.0
16 TraesCS7B01G286600 chr7D 88.095 252 19 6 4100 4344 199606878 199607125 9.900000e-74 289.0
17 TraesCS7B01G286600 chr7D 87.170 265 21 8 4100 4357 485106718 485106460 9.900000e-74 289.0
18 TraesCS7B01G286600 chr7D 89.583 96 10 0 1592 1687 67057650 67057555 1.060000e-23 122.0
19 TraesCS7B01G286600 chr6D 82.245 490 53 24 984 1457 85911090 85911561 7.340000e-105 392.0
20 TraesCS7B01G286600 chr6D 82.990 194 29 2 1751 1944 85911712 85911901 1.040000e-38 172.0
21 TraesCS7B01G286600 chr6D 86.400 125 14 2 6053 6176 85912710 85912832 4.910000e-27 134.0
22 TraesCS7B01G286600 chr6D 88.542 96 11 0 1592 1687 79800605 79800700 4.940000e-22 117.0
23 TraesCS7B01G286600 chr2A 86.891 267 17 11 4100 4357 15611053 15610796 4.610000e-72 283.0
24 TraesCS7B01G286600 chr2A 88.525 61 2 5 5503 5563 384990554 384990609 1.400000e-07 69.4
25 TraesCS7B01G286600 chr2D 85.985 264 24 6 4100 4357 62062946 62063202 3.590000e-68 270.0
26 TraesCS7B01G286600 chr2D 87.368 95 7 5 5469 5560 186695770 186695678 3.850000e-18 104.0
27 TraesCS7B01G286600 chr2B 85.502 269 22 13 4100 4357 24242053 24241791 1.670000e-66 265.0
28 TraesCS7B01G286600 chr2B 85.185 270 26 12 4097 4358 680079740 680080003 1.670000e-66 265.0
29 TraesCS7B01G286600 chr2B 87.845 181 14 8 1288 1463 292863981 292864158 1.030000e-48 206.0
30 TraesCS7B01G286600 chr2B 87.363 182 15 8 1287 1463 254785508 254785330 1.330000e-47 202.0
31 TraesCS7B01G286600 chr2B 86.264 182 17 6 1287 1463 105100967 105101145 2.870000e-44 191.0
32 TraesCS7B01G286600 chr6B 87.204 211 24 2 984 1191 162566970 162567180 3.640000e-58 237.0
33 TraesCS7B01G286600 chr6B 75.261 574 67 33 2117 2668 162567983 162568503 3.690000e-48 204.0
34 TraesCS7B01G286600 chr6B 90.517 116 6 5 1599 1713 162567582 162567693 1.750000e-31 148.0
35 TraesCS7B01G286600 chr6B 75.942 345 42 23 5846 6178 162568532 162568847 1.060000e-28 139.0
36 TraesCS7B01G286600 chr6B 88.333 60 4 3 5487 5545 93341034 93341091 1.400000e-07 69.4
37 TraesCS7B01G286600 chr1B 87.912 182 14 8 1287 1463 661296086 661295908 2.850000e-49 207.0
38 TraesCS7B01G286600 chr1A 87.363 182 15 8 1287 1463 425128328 425128506 1.330000e-47 202.0
39 TraesCS7B01G286600 chr6A 77.961 363 47 11 1582 1944 103269095 103269424 6.170000e-46 196.0
40 TraesCS7B01G286600 chr6A 86.719 128 8 6 6053 6176 103269977 103270099 4.910000e-27 134.0
41 TraesCS7B01G286600 chr6A 95.556 45 1 1 5503 5546 57653978 57654022 3.900000e-08 71.3
42 TraesCS7B01G286600 chr4A 86.932 176 15 5 1293 1463 619021707 619021535 2.870000e-44 191.0
43 TraesCS7B01G286600 chr5B 88.312 154 10 8 1287 1435 664901977 664901827 2.240000e-40 178.0
44 TraesCS7B01G286600 chr5D 89.583 96 10 0 1592 1687 442272828 442272733 1.060000e-23 122.0
45 TraesCS7B01G286600 chr3D 89.583 96 10 0 1592 1687 347750895 347750990 1.060000e-23 122.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G286600 chr7B 522072455 522080252 7797 False 6870.500000 11463 100.000000 1 7798 2 chr7B.!!$F1 7797
1 TraesCS7B01G286600 chr7A 559199262 559207462 8200 False 1760.000000 5195 88.940800 284 7769 5 chr7A.!!$F2 7485
2 TraesCS7B01G286600 chr7D 492842734 492851219 8485 False 1377.285714 3241 89.157571 1 7749 7 chr7D.!!$F2 7748
3 TraesCS7B01G286600 chr6D 85911090 85912832 1742 False 232.666667 392 83.878333 984 6176 3 chr6D.!!$F2 5192

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
882 1461 0.029059 CTCCTTCCCCTTCCCCCATA 60.029 60.000 0.00 0.0 0.00 2.74 F
1772 2379 0.327867 ATGGGGATTCTCCAGCTCCA 60.328 55.000 11.72 0.0 38.64 3.86 F
2907 3610 1.296715 CTCAACCCCCTCACTTCGG 59.703 63.158 0.00 0.0 0.00 4.30 F
3804 4523 0.033366 GAACAAAGCCCGCAACCATT 59.967 50.000 0.00 0.0 0.00 3.16 F
4859 5762 0.622136 TCTAGTCACCGCCTACTCCA 59.378 55.000 0.00 0.0 0.00 3.86 F
5040 5952 0.889186 CAAGCTACCCGCACTTGGTT 60.889 55.000 0.00 0.0 42.61 3.67 F
5948 8018 1.400846 TCCGCGACATGTCTAAGAGAC 59.599 52.381 22.95 0.0 45.26 3.36 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1900 2507 0.447801 GAGCGGCATCGACATTTTGT 59.552 50.000 1.45 0.00 39.00 2.83 R
3553 4264 0.393808 ATTAATGCCACGCGGACCTT 60.394 50.000 12.47 0.94 0.00 3.50 R
4133 4860 1.141053 AGTTTGACCCGAGACAAAGCT 59.859 47.619 0.00 0.00 38.11 3.74 R
5028 5936 0.039888 CCGTTTTAACCAAGTGCGGG 60.040 55.000 0.00 0.00 34.77 6.13 R
5986 8056 0.598065 ACCGAATGACAAAAGCCAGC 59.402 50.000 0.00 0.00 0.00 4.85 R
6566 8663 1.764723 TCATGGTCAGCTCGGATTCAT 59.235 47.619 0.00 0.00 0.00 2.57 R
7283 9421 0.035439 AACCGGGCTTGATGACGATT 60.035 50.000 6.32 0.00 0.00 3.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.435410 GTTACCCGGGACTTGGCG 60.435 66.667 32.02 0.00 0.00 5.69
94 95 1.142965 TCCCGGCGTGACACATATG 59.857 57.895 6.01 0.00 0.00 1.78
100 101 2.799562 CGGCGTGACACATATGACAGAT 60.800 50.000 10.38 0.00 30.95 2.90
116 117 1.094073 AGATCCGACGAGGTACACCG 61.094 60.000 0.00 0.00 42.08 4.94
120 121 3.993535 GACGAGGTACACCGTCCT 58.006 61.111 21.31 0.00 45.65 3.85
123 124 0.036732 ACGAGGTACACCGTCCTACA 59.963 55.000 6.04 0.00 42.08 2.74
136 137 0.606604 TCCTACAGGAACCGTCTTGC 59.393 55.000 0.00 0.00 42.18 4.01
150 151 2.417933 CGTCTTGCTCCATCTTTCTTGG 59.582 50.000 0.00 0.00 35.45 3.61
166 168 4.679373 TCTTGGATTCTAGATCTGCCAC 57.321 45.455 5.18 0.00 0.00 5.01
167 169 4.033009 TCTTGGATTCTAGATCTGCCACA 58.967 43.478 5.18 0.00 0.00 4.17
169 171 4.142609 TGGATTCTAGATCTGCCACAAC 57.857 45.455 5.18 0.00 0.00 3.32
170 172 3.126831 GGATTCTAGATCTGCCACAACG 58.873 50.000 5.18 0.00 0.00 4.10
171 173 2.672961 TTCTAGATCTGCCACAACGG 57.327 50.000 5.18 0.00 38.11 4.44
173 175 1.751351 TCTAGATCTGCCACAACGGAG 59.249 52.381 5.18 0.00 36.56 4.63
174 176 0.175760 TAGATCTGCCACAACGGAGC 59.824 55.000 5.18 0.00 36.56 4.70
175 177 1.375908 GATCTGCCACAACGGAGCA 60.376 57.895 0.00 0.00 36.56 4.26
196 744 7.713073 GGAGCAATACTAAGAGAAATGTTAGCT 59.287 37.037 0.00 0.00 30.57 3.32
208 756 9.665264 AGAGAAATGTTAGCTTTTCTTTTTACG 57.335 29.630 17.59 0.00 44.17 3.18
210 758 9.665264 AGAAATGTTAGCTTTTCTTTTTACGAG 57.335 29.630 12.73 0.00 42.66 4.18
212 760 9.665264 AAATGTTAGCTTTTCTTTTTACGAGAG 57.335 29.630 0.00 0.00 0.00 3.20
220 768 7.535599 GCTTTTCTTTTTACGAGAGGAGAAATG 59.464 37.037 0.00 3.59 34.32 2.32
224 772 9.550406 TTCTTTTTACGAGAGGAGAAATGTTAA 57.450 29.630 0.00 0.00 0.00 2.01
228 776 7.884816 TTACGAGAGGAGAAATGTTAACTTG 57.115 36.000 7.22 0.00 0.00 3.16
235 783 7.545965 AGAGGAGAAATGTTAACTTGATGTACG 59.454 37.037 7.22 0.00 0.00 3.67
257 805 9.638300 GTACGAAATGATAGAAATGTTAAGCTG 57.362 33.333 0.00 0.00 0.00 4.24
258 806 7.697691 ACGAAATGATAGAAATGTTAAGCTGG 58.302 34.615 0.00 0.00 0.00 4.85
259 807 6.634436 CGAAATGATAGAAATGTTAAGCTGGC 59.366 38.462 0.00 0.00 0.00 4.85
260 808 6.396829 AATGATAGAAATGTTAAGCTGGCC 57.603 37.500 0.00 0.00 0.00 5.36
261 809 3.876914 TGATAGAAATGTTAAGCTGGCCG 59.123 43.478 0.00 0.00 0.00 6.13
262 810 1.463674 AGAAATGTTAAGCTGGCCGG 58.536 50.000 7.41 7.41 0.00 6.13
263 811 1.004277 AGAAATGTTAAGCTGGCCGGA 59.996 47.619 18.31 0.00 0.00 5.14
264 812 1.401905 GAAATGTTAAGCTGGCCGGAG 59.598 52.381 18.31 0.00 0.00 4.63
275 825 0.321671 TGGCCGGAGAAACAGAGAAG 59.678 55.000 5.05 0.00 0.00 2.85
308 858 2.004583 TTAAGACGAGACAATGCCCG 57.995 50.000 0.00 0.00 0.00 6.13
314 864 1.480954 ACGAGACAATGCCCGTTCTAT 59.519 47.619 0.00 0.00 30.41 1.98
346 897 8.200120 ACAAAAGAAGAAAAGAGAGGGAAAATG 58.800 33.333 0.00 0.00 0.00 2.32
355 906 8.427902 AAAAGAGAGGGAAAATGCTTTATTCT 57.572 30.769 0.00 0.00 0.00 2.40
356 907 8.427902 AAAGAGAGGGAAAATGCTTTATTCTT 57.572 30.769 0.00 0.00 0.00 2.52
357 908 8.427902 AAGAGAGGGAAAATGCTTTATTCTTT 57.572 30.769 0.00 0.00 0.00 2.52
358 909 9.533831 AAGAGAGGGAAAATGCTTTATTCTTTA 57.466 29.630 0.00 0.00 0.00 1.85
384 935 3.946558 AGCTGAAAATGCAGGAGAGAATC 59.053 43.478 0.00 0.00 36.41 2.52
385 936 3.693085 GCTGAAAATGCAGGAGAGAATCA 59.307 43.478 0.00 0.00 35.16 2.57
386 937 4.438472 GCTGAAAATGCAGGAGAGAATCAC 60.438 45.833 0.00 0.00 35.16 3.06
393 944 2.903404 GGAGAGAATCACCCGGTCT 58.097 57.895 0.00 0.00 40.26 3.85
440 1002 3.003173 AGACCGGCAAGCTAGGCA 61.003 61.111 0.00 0.00 0.00 4.75
759 1338 3.238497 CACCCACCACCGTCCTCA 61.238 66.667 0.00 0.00 0.00 3.86
810 1389 1.003573 ACCTCCATCCCACCTCCTC 59.996 63.158 0.00 0.00 0.00 3.71
867 1446 3.453988 GCAGCTAGCCGATCTCCT 58.546 61.111 12.13 0.00 37.23 3.69
868 1447 1.745264 GCAGCTAGCCGATCTCCTT 59.255 57.895 12.13 0.00 37.23 3.36
869 1448 0.319469 GCAGCTAGCCGATCTCCTTC 60.319 60.000 12.13 0.00 37.23 3.46
872 1451 1.822114 GCTAGCCGATCTCCTTCCCC 61.822 65.000 2.29 0.00 0.00 4.81
874 1453 0.264955 TAGCCGATCTCCTTCCCCTT 59.735 55.000 0.00 0.00 0.00 3.95
881 1460 1.309102 CTCCTTCCCCTTCCCCCAT 60.309 63.158 0.00 0.00 0.00 4.00
882 1461 0.029059 CTCCTTCCCCTTCCCCCATA 60.029 60.000 0.00 0.00 0.00 2.74
883 1462 0.328158 TCCTTCCCCTTCCCCCATAC 60.328 60.000 0.00 0.00 0.00 2.39
884 1463 0.328548 CCTTCCCCTTCCCCCATACT 60.329 60.000 0.00 0.00 0.00 2.12
885 1464 1.141185 CTTCCCCTTCCCCCATACTC 58.859 60.000 0.00 0.00 0.00 2.59
927 1511 0.814812 GTCGGTCGACCTAGCTAGCT 60.815 60.000 30.92 23.12 39.08 3.32
928 1512 0.532417 TCGGTCGACCTAGCTAGCTC 60.532 60.000 30.92 10.53 0.00 4.09
929 1513 1.833434 CGGTCGACCTAGCTAGCTCG 61.833 65.000 30.92 25.84 33.82 5.03
930 1514 1.280444 GTCGACCTAGCTAGCTCGC 59.720 63.158 26.62 19.52 32.87 5.03
931 1515 1.892862 TCGACCTAGCTAGCTCGCC 60.893 63.158 26.62 8.52 32.87 5.54
932 1516 2.187493 CGACCTAGCTAGCTCGCCA 61.187 63.158 23.26 1.96 0.00 5.69
933 1517 1.657556 GACCTAGCTAGCTCGCCAG 59.342 63.158 23.26 13.04 0.00 4.85
1017 1604 2.699938 ATGGGGCGGGGGAAGATT 60.700 61.111 0.00 0.00 0.00 2.40
1203 1792 2.096268 CACCGAGTACGAACTACGAACA 60.096 50.000 0.00 0.00 45.77 3.18
1204 1793 2.158449 ACCGAGTACGAACTACGAACAG 59.842 50.000 0.00 0.00 45.77 3.16
1205 1794 2.164427 CGAGTACGAACTACGAACAGC 58.836 52.381 0.00 0.00 45.77 4.40
1206 1795 2.411935 CGAGTACGAACTACGAACAGCA 60.412 50.000 0.00 0.00 45.77 4.41
1256 1850 6.906157 ATTATCAATTCCATTCCATCGCTT 57.094 33.333 0.00 0.00 0.00 4.68
1273 1867 1.407979 GCTTGCTGCCTGCTTGATTAT 59.592 47.619 0.00 0.00 43.37 1.28
1274 1868 2.620115 GCTTGCTGCCTGCTTGATTATA 59.380 45.455 0.00 0.00 43.37 0.98
1317 1911 3.653344 TCGTCTTGTTCTTCTCCATGTG 58.347 45.455 0.00 0.00 0.00 3.21
1320 1914 4.380531 GTCTTGTTCTTCTCCATGTGTGA 58.619 43.478 0.00 0.00 0.00 3.58
1321 1915 4.999950 GTCTTGTTCTTCTCCATGTGTGAT 59.000 41.667 0.00 0.00 0.00 3.06
1421 2020 0.525311 GCTGCTTCTCTTTCTTGCCC 59.475 55.000 0.00 0.00 0.00 5.36
1422 2021 1.885790 GCTGCTTCTCTTTCTTGCCCT 60.886 52.381 0.00 0.00 0.00 5.19
1423 2022 2.512705 CTGCTTCTCTTTCTTGCCCTT 58.487 47.619 0.00 0.00 0.00 3.95
1445 2046 7.093596 CCCTTCATCCATCTTTTTCTTTAGCTT 60.094 37.037 0.00 0.00 0.00 3.74
1565 2172 1.334869 CGGTGCTTCACTGCTCTTTTT 59.665 47.619 0.00 0.00 33.85 1.94
1687 2294 6.441924 AGATCAGGTCAATCACTTTCCTCTTA 59.558 38.462 0.00 0.00 0.00 2.10
1697 2304 9.454859 CAATCACTTTCCTCTTACCTTCTTTAT 57.545 33.333 0.00 0.00 0.00 1.40
1701 2308 9.549078 CACTTTCCTCTTACCTTCTTTATATCC 57.451 37.037 0.00 0.00 0.00 2.59
1713 2320 8.053355 ACCTTCTTTATATCCGAACCATTCTTT 58.947 33.333 0.00 0.00 0.00 2.52
1714 2321 8.560374 CCTTCTTTATATCCGAACCATTCTTTC 58.440 37.037 0.00 0.00 0.00 2.62
1715 2322 9.109393 CTTCTTTATATCCGAACCATTCTTTCA 57.891 33.333 0.00 0.00 0.00 2.69
1717 2324 9.056005 TCTTTATATCCGAACCATTCTTTCATG 57.944 33.333 0.00 0.00 0.00 3.07
1727 2334 5.945144 CCATTCTTTCATGGGGATTCTTT 57.055 39.130 0.00 0.00 40.29 2.52
1728 2335 6.303903 CCATTCTTTCATGGGGATTCTTTT 57.696 37.500 0.00 0.00 40.29 2.27
1729 2336 6.110707 CCATTCTTTCATGGGGATTCTTTTG 58.889 40.000 0.00 0.00 40.29 2.44
1730 2337 4.806640 TCTTTCATGGGGATTCTTTTGC 57.193 40.909 0.00 0.00 0.00 3.68
1731 2338 4.419282 TCTTTCATGGGGATTCTTTTGCT 58.581 39.130 0.00 0.00 0.00 3.91
1732 2339 4.840115 TCTTTCATGGGGATTCTTTTGCTT 59.160 37.500 0.00 0.00 0.00 3.91
1733 2340 4.806640 TTCATGGGGATTCTTTTGCTTC 57.193 40.909 0.00 0.00 0.00 3.86
1734 2341 3.777087 TCATGGGGATTCTTTTGCTTCA 58.223 40.909 0.00 0.00 0.00 3.02
1735 2342 4.355549 TCATGGGGATTCTTTTGCTTCAT 58.644 39.130 0.00 0.00 0.00 2.57
1736 2343 4.160814 TCATGGGGATTCTTTTGCTTCATG 59.839 41.667 0.00 0.00 0.00 3.07
1737 2344 2.833338 TGGGGATTCTTTTGCTTCATGG 59.167 45.455 0.00 0.00 0.00 3.66
1738 2345 2.169144 GGGGATTCTTTTGCTTCATGGG 59.831 50.000 0.00 0.00 0.00 4.00
1739 2346 2.169144 GGGATTCTTTTGCTTCATGGGG 59.831 50.000 0.00 0.00 0.00 4.96
1740 2347 3.099141 GGATTCTTTTGCTTCATGGGGA 58.901 45.455 0.00 0.00 0.00 4.81
1741 2348 3.708121 GGATTCTTTTGCTTCATGGGGAT 59.292 43.478 0.00 0.00 0.00 3.85
1742 2349 4.162888 GGATTCTTTTGCTTCATGGGGATT 59.837 41.667 0.00 0.00 0.00 3.01
1743 2350 4.806640 TTCTTTTGCTTCATGGGGATTC 57.193 40.909 0.00 0.00 0.00 2.52
1744 2351 4.051661 TCTTTTGCTTCATGGGGATTCT 57.948 40.909 0.00 0.00 0.00 2.40
1745 2352 4.419282 TCTTTTGCTTCATGGGGATTCTT 58.581 39.130 0.00 0.00 0.00 2.52
1746 2353 4.840115 TCTTTTGCTTCATGGGGATTCTTT 59.160 37.500 0.00 0.00 0.00 2.52
1747 2354 5.307716 TCTTTTGCTTCATGGGGATTCTTTT 59.692 36.000 0.00 0.00 0.00 2.27
1748 2355 4.540359 TTGCTTCATGGGGATTCTTTTG 57.460 40.909 0.00 0.00 0.00 2.44
1749 2356 2.234414 TGCTTCATGGGGATTCTTTTGC 59.766 45.455 0.00 0.00 0.00 3.68
1772 2379 0.327867 ATGGGGATTCTCCAGCTCCA 60.328 55.000 11.72 0.00 38.64 3.86
1781 2388 3.939740 TCTCCAGCTCCAGCAATTTAT 57.060 42.857 0.48 0.00 45.16 1.40
1786 2393 5.448654 TCCAGCTCCAGCAATTTATATTGT 58.551 37.500 7.59 0.00 42.56 2.71
1823 2430 9.088512 AGATCGACTTGAATTAACATACTGTTC 57.911 33.333 0.00 0.00 40.22 3.18
1828 2435 9.659830 GACTTGAATTAACATACTGTTCGTTTT 57.340 29.630 0.00 0.00 40.22 2.43
1900 2507 2.738521 GAGCTGCGCGACCTTGAA 60.739 61.111 12.10 0.00 0.00 2.69
1930 2537 1.965754 ATGCCGCTCTCAAGGAGGTC 61.966 60.000 0.00 0.00 42.08 3.85
1977 2584 5.487845 ACAAAACCCTAGCTACCAGATTAGT 59.512 40.000 0.00 0.00 0.00 2.24
2058 2665 4.216042 CCAATCCGTGCATATTTCATGCTA 59.784 41.667 10.30 0.00 44.79 3.49
2059 2666 5.388111 CAATCCGTGCATATTTCATGCTAG 58.612 41.667 10.30 4.65 44.79 3.42
2060 2667 2.807967 TCCGTGCATATTTCATGCTAGC 59.192 45.455 8.10 8.10 44.79 3.42
2106 2773 6.814644 ACAGTTCTCGATCTCTAGGATATACG 59.185 42.308 0.00 0.00 34.33 3.06
2107 2774 6.256975 CAGTTCTCGATCTCTAGGATATACGG 59.743 46.154 0.00 0.00 34.33 4.02
2108 2775 6.154877 AGTTCTCGATCTCTAGGATATACGGA 59.845 42.308 0.00 0.00 34.33 4.69
2109 2776 6.151663 TCTCGATCTCTAGGATATACGGAG 57.848 45.833 5.07 5.07 34.33 4.63
2110 2777 5.657745 TCTCGATCTCTAGGATATACGGAGT 59.342 44.000 9.66 0.77 38.76 3.85
2111 2778 6.832900 TCTCGATCTCTAGGATATACGGAGTA 59.167 42.308 9.66 0.81 40.49 2.59
2112 2779 6.804677 TCGATCTCTAGGATATACGGAGTAC 58.195 44.000 9.66 0.00 39.53 2.73
2468 3150 3.809905 ACTAGATCTTTCCCCAATTCGC 58.190 45.455 0.00 0.00 0.00 4.70
2570 3255 5.724328 TGTGTTCACCAGATCTCTGTATTC 58.276 41.667 6.46 0.00 42.27 1.75
2643 3335 7.928307 AGATATGTATGACCATTATTGCACC 57.072 36.000 0.00 0.00 0.00 5.01
2675 3367 4.486574 CATCATATGCATGGCGTTACAA 57.513 40.909 10.16 0.00 32.61 2.41
2676 3368 4.857799 CATCATATGCATGGCGTTACAAA 58.142 39.130 10.16 0.00 32.61 2.83
2677 3369 5.463286 CATCATATGCATGGCGTTACAAAT 58.537 37.500 10.16 0.00 32.61 2.32
2679 3371 4.578105 TCATATGCATGGCGTTACAAATGA 59.422 37.500 10.16 3.38 32.61 2.57
2680 3372 3.865011 ATGCATGGCGTTACAAATGAA 57.135 38.095 0.00 0.00 0.00 2.57
2831 3534 2.030562 ACCTCCACGCCTCAAACG 59.969 61.111 0.00 0.00 0.00 3.60
2907 3610 1.296715 CTCAACCCCCTCACTTCGG 59.703 63.158 0.00 0.00 0.00 4.30
2918 3621 2.416162 CCTCACTTCGGCAACTCTAGAC 60.416 54.545 0.00 0.00 0.00 2.59
3386 4097 3.747854 AGCCTTTAGTTATACGGCCTC 57.252 47.619 0.00 0.00 41.60 4.70
3387 4098 3.306613 AGCCTTTAGTTATACGGCCTCT 58.693 45.455 0.00 0.00 41.60 3.69
3561 4272 6.929606 AGATATGTTTATGTTCTAAGGTCCGC 59.070 38.462 0.00 0.00 0.00 5.54
3611 4324 9.452065 GGAAAGAATAGTGTGTCTTTTTCTTTC 57.548 33.333 19.90 19.90 46.57 2.62
3676 4389 5.565439 GCACAAAGCATTCTTATTGTGAGGT 60.565 40.000 18.53 0.00 40.73 3.85
3681 4394 9.474920 CAAAGCATTCTTATTGTGAGGTTTTTA 57.525 29.630 0.00 0.00 31.02 1.52
3735 4449 4.950050 ACAACCGCATCCAACAAATAAAA 58.050 34.783 0.00 0.00 0.00 1.52
3736 4450 5.546526 ACAACCGCATCCAACAAATAAAAT 58.453 33.333 0.00 0.00 0.00 1.82
3770 4489 4.256983 ACTGATCCCATGACTAGACTCA 57.743 45.455 0.00 0.00 0.00 3.41
3804 4523 0.033366 GAACAAAGCCCGCAACCATT 59.967 50.000 0.00 0.00 0.00 3.16
3871 4590 6.821665 GCTATTGAAGTAAGGACCACATACAA 59.178 38.462 0.00 0.00 0.00 2.41
3890 4612 4.097418 ACAAATCTAGTCAGTAGCCCTGT 58.903 43.478 1.34 0.00 42.19 4.00
3907 4631 4.626046 GCCCTGTGGATAATTGGCAAAAAT 60.626 41.667 3.01 0.00 38.73 1.82
3968 4692 7.568349 ACATGAGTTTCTTCTATAGCCATTGA 58.432 34.615 0.00 0.00 0.00 2.57
4018 4742 2.409378 GCGTTGGATGAACAATTGCTTG 59.591 45.455 5.05 0.00 38.39 4.01
4033 4757 6.262496 ACAATTGCTTGGACATATGAGATCTG 59.738 38.462 10.38 0.00 36.64 2.90
4035 4759 2.735663 GCTTGGACATATGAGATCTGCG 59.264 50.000 10.38 0.00 0.00 5.18
4098 4825 6.586344 AGATGACACTAATCTTACATGGGTG 58.414 40.000 0.00 0.00 29.94 4.61
4115 4842 3.271055 GGTGCTCCCTCCGTTTTTATA 57.729 47.619 0.00 0.00 0.00 0.98
4117 4844 3.564225 GGTGCTCCCTCCGTTTTTATATG 59.436 47.826 0.00 0.00 0.00 1.78
4169 4896 6.856426 GGGTCAAACTTTCTAAACTTTGATCG 59.144 38.462 11.08 0.00 34.98 3.69
4325 5061 8.697846 AAAGTTTAACTTAGGTCAAAGCAAAC 57.302 30.769 10.97 0.00 37.47 2.93
4339 5075 4.519540 AAGCAAACATGCGGAGTAAATT 57.480 36.364 0.00 0.00 40.27 1.82
4345 5081 6.144724 GCAAACATGCGGAGTAAATTAAAACA 59.855 34.615 0.00 0.00 0.00 2.83
4349 5085 6.653320 ACATGCGGAGTAAATTAAAACAGAGA 59.347 34.615 0.00 0.00 0.00 3.10
4351 5087 5.121768 TGCGGAGTAAATTAAAACAGAGAGC 59.878 40.000 0.00 0.00 0.00 4.09
4429 5165 6.238103 GCATCTTGTAAAGTACATGCACGTAT 60.238 38.462 0.00 0.00 45.61 3.06
4439 5175 6.827641 AGTACATGCACGTATAACAAAACAG 58.172 36.000 0.00 0.00 0.00 3.16
4480 5216 5.941058 ACATGTTGTCCCGTCAAATATACAA 59.059 36.000 0.00 0.00 0.00 2.41
4527 5423 8.224169 CCTTCGTTAGGTGATATAAATACACG 57.776 38.462 0.00 0.00 39.39 4.49
4528 5424 7.864379 CCTTCGTTAGGTGATATAAATACACGT 59.136 37.037 0.00 0.00 39.39 4.49
4529 5425 8.564648 TTCGTTAGGTGATATAAATACACGTG 57.435 34.615 15.48 15.48 35.05 4.49
4567 5463 3.427161 AGTTTCTGCAACTTTCACTGC 57.573 42.857 0.00 0.00 43.89 4.40
4570 5466 1.882912 TCTGCAACTTTCACTGCGAT 58.117 45.000 0.00 0.00 41.63 4.58
4590 5486 7.186804 TGCGATTAAGCTAGAAAAATGTTAGC 58.813 34.615 0.00 0.00 39.99 3.09
4592 5488 6.846283 CGATTAAGCTAGAAAAATGTTAGCCG 59.154 38.462 0.00 0.00 40.44 5.52
4593 5489 4.965119 AAGCTAGAAAAATGTTAGCCGG 57.035 40.909 0.00 0.00 40.44 6.13
4609 5505 6.015350 TGTTAGCCGGGTAAAAATGAAATCAA 60.015 34.615 26.70 0.00 0.00 2.57
4663 5566 3.726291 TGGCAGTCAAAGTTTAAAGGC 57.274 42.857 0.00 0.00 0.00 4.35
4689 5592 9.159364 CCATTCCTATGTACAGAATGATGTATG 57.841 37.037 26.17 12.20 46.33 2.39
4720 5623 3.889538 TGCAGCGAGTATAATGTACTCCT 59.110 43.478 10.83 6.88 40.48 3.69
4759 5662 5.351189 TGTTTCTCTTGCCTTTTCTTTTTGC 59.649 36.000 0.00 0.00 0.00 3.68
4859 5762 0.622136 TCTAGTCACCGCCTACTCCA 59.378 55.000 0.00 0.00 0.00 3.86
4871 5774 3.865745 CGCCTACTCCAAAAGTCATAGTG 59.134 47.826 0.00 0.00 39.55 2.74
4880 5783 6.542821 TCCAAAAGTCATAGTGAAGACCAAT 58.457 36.000 0.00 0.00 35.38 3.16
4991 5895 8.771920 TGTTCAAGTAGTATATCCACAACAAG 57.228 34.615 0.00 0.00 0.00 3.16
5031 5939 2.812011 AGCTAAACAAACAAGCTACCCG 59.188 45.455 0.00 0.00 44.55 5.28
5040 5952 0.889186 CAAGCTACCCGCACTTGGTT 60.889 55.000 0.00 0.00 42.61 3.67
5044 5956 1.881324 GCTACCCGCACTTGGTTAAAA 59.119 47.619 0.00 0.00 37.31 1.52
5105 6017 6.416415 TGGGTGTACTCAAACTTCTTTAACA 58.584 36.000 0.00 0.00 0.00 2.41
5108 6020 7.227910 GGGTGTACTCAAACTTCTTTAACATCA 59.772 37.037 0.00 0.00 0.00 3.07
5229 6144 5.820423 ACAGTAATACTTGCACTTTGACACA 59.180 36.000 0.00 0.00 0.00 3.72
5247 6162 4.624015 ACACAATGCAAGATCCAAAACAG 58.376 39.130 0.00 0.00 0.00 3.16
5336 6258 7.549839 ACAACTCATAATTTTATGTGCATGCT 58.450 30.769 20.33 0.40 40.97 3.79
5829 7887 6.508030 TGCCATGGTCCTTCATATAAACTA 57.492 37.500 14.67 0.00 0.00 2.24
5864 7923 5.346281 CCTACTCATTCTGAACACGTCTTTC 59.654 44.000 0.00 0.00 0.00 2.62
5870 7929 3.194861 TCTGAACACGTCTTTCACTTGG 58.805 45.455 5.23 0.00 0.00 3.61
5917 7985 2.765699 AGACAAGCAACAAACCCATGTT 59.234 40.909 0.00 0.00 44.08 2.71
5946 8016 2.783828 ATCCGCGACATGTCTAAGAG 57.216 50.000 22.95 9.73 0.00 2.85
5947 8017 1.746470 TCCGCGACATGTCTAAGAGA 58.254 50.000 22.95 9.95 0.00 3.10
5948 8018 1.400846 TCCGCGACATGTCTAAGAGAC 59.599 52.381 22.95 0.00 45.26 3.36
5952 8022 4.275662 CGCGACATGTCTAAGAGACTAAG 58.724 47.826 22.95 4.62 45.27 2.18
5953 8023 4.034163 CGCGACATGTCTAAGAGACTAAGA 59.966 45.833 22.95 0.00 45.27 2.10
5954 8024 5.267776 GCGACATGTCTAAGAGACTAAGAC 58.732 45.833 22.95 5.52 45.27 3.01
6100 8195 2.315925 TCTCTCGGAATCCATTGCAC 57.684 50.000 0.00 0.00 0.00 4.57
6588 8685 2.965147 TGAATCCGAGCTGACCATGATA 59.035 45.455 0.00 0.00 0.00 2.15
6656 8753 3.912745 ATTCGTGGACAACCCGGCC 62.913 63.158 0.00 0.00 37.93 6.13
6806 8927 1.004277 GCCTCGGCTAATCGATCACG 61.004 60.000 0.00 1.42 38.55 4.35
6807 8928 0.387367 CCTCGGCTAATCGATCACGG 60.387 60.000 0.00 0.00 38.55 4.94
6809 8930 1.007271 CGGCTAATCGATCACGGCT 60.007 57.895 0.00 0.00 40.21 5.52
6812 8933 2.671351 CGGCTAATCGATCACGGCTATT 60.671 50.000 0.00 0.00 40.21 1.73
6983 9121 3.616821 TGCTCGACTGTGTATTGTATTGC 59.383 43.478 0.00 0.00 0.00 3.56
6989 9127 6.018832 TCGACTGTGTATTGTATTGCATGATG 60.019 38.462 0.00 0.00 0.00 3.07
7017 9155 3.876914 TGACTTTGGTTGTGAGCTACTTG 59.123 43.478 0.00 0.00 0.00 3.16
7018 9156 3.214328 ACTTTGGTTGTGAGCTACTTGG 58.786 45.455 0.00 0.00 0.00 3.61
7024 9162 2.737252 GTTGTGAGCTACTTGGTGCTAC 59.263 50.000 0.00 0.00 39.91 3.58
7027 9165 4.023980 TGTGAGCTACTTGGTGCTACTAT 58.976 43.478 0.00 0.00 39.91 2.12
7028 9166 4.098044 TGTGAGCTACTTGGTGCTACTATC 59.902 45.833 0.00 0.00 39.91 2.08
7032 9170 6.207614 TGAGCTACTTGGTGCTACTATCATAG 59.792 42.308 0.00 0.00 39.91 2.23
7119 9257 9.119418 CATATTTGTTTTTGAAAAAGGAGGGTT 57.881 29.630 2.91 0.00 0.00 4.11
7121 9259 6.809630 TTGTTTTTGAAAAAGGAGGGTTTG 57.190 33.333 2.91 0.00 0.00 2.93
7175 9313 8.451908 ACAACCATATTGATTAGGTTTAGAGC 57.548 34.615 0.00 0.00 37.03 4.09
7186 9324 9.507329 TGATTAGGTTTAGAGCATTAATCATCC 57.493 33.333 4.16 0.00 34.43 3.51
7187 9325 7.962964 TTAGGTTTAGAGCATTAATCATCCG 57.037 36.000 0.00 0.00 0.00 4.18
7188 9326 5.308825 AGGTTTAGAGCATTAATCATCCGG 58.691 41.667 0.00 0.00 0.00 5.14
7189 9327 5.063880 GGTTTAGAGCATTAATCATCCGGT 58.936 41.667 0.00 0.00 0.00 5.28
7190 9328 6.042781 AGGTTTAGAGCATTAATCATCCGGTA 59.957 38.462 0.00 0.00 0.00 4.02
7191 9329 6.369065 GGTTTAGAGCATTAATCATCCGGTAG 59.631 42.308 0.00 0.00 0.00 3.18
7192 9330 6.665992 TTAGAGCATTAATCATCCGGTAGT 57.334 37.500 0.00 0.00 0.00 2.73
7193 9331 5.140747 AGAGCATTAATCATCCGGTAGTC 57.859 43.478 0.00 0.00 0.00 2.59
7194 9332 3.914312 AGCATTAATCATCCGGTAGTCG 58.086 45.455 0.00 0.00 38.88 4.18
7195 9333 3.321111 AGCATTAATCATCCGGTAGTCGT 59.679 43.478 0.00 0.00 37.11 4.34
7196 9334 4.521639 AGCATTAATCATCCGGTAGTCGTA 59.478 41.667 0.00 0.00 37.11 3.43
7197 9335 4.620184 GCATTAATCATCCGGTAGTCGTAC 59.380 45.833 0.00 0.00 37.11 3.67
7205 9343 3.577667 TCCGGTAGTCGTACACAAATTG 58.422 45.455 0.00 0.00 37.11 2.32
7213 9351 7.330208 GGTAGTCGTACACAAATTGACAGTAAT 59.670 37.037 0.00 0.00 32.08 1.89
7215 9353 8.821147 AGTCGTACACAAATTGACAGTAATAA 57.179 30.769 0.00 0.00 32.08 1.40
7220 9358 6.831769 ACACAAATTGACAGTAATAAGAGCG 58.168 36.000 0.00 0.00 0.00 5.03
7240 9378 3.381045 CGCAGAGCTCGAAATAACCATA 58.619 45.455 8.37 0.00 0.00 2.74
7241 9379 3.182572 CGCAGAGCTCGAAATAACCATAC 59.817 47.826 8.37 0.00 0.00 2.39
7283 9421 8.502105 GATGCAATCACATATTCTATCATGGA 57.498 34.615 0.00 0.00 44.70 3.41
7287 9425 8.121086 GCAATCACATATTCTATCATGGAATCG 58.879 37.037 0.00 0.00 35.40 3.34
7293 9431 8.534496 ACATATTCTATCATGGAATCGTCATCA 58.466 33.333 0.00 0.00 35.40 3.07
7314 9452 3.434940 AGCCCGGTTAAAGAAACATCT 57.565 42.857 0.00 0.00 40.08 2.90
7315 9453 3.344515 AGCCCGGTTAAAGAAACATCTC 58.655 45.455 0.00 0.00 40.08 2.75
7318 9456 4.076394 CCCGGTTAAAGAAACATCTCCAA 58.924 43.478 0.00 0.00 40.08 3.53
7320 9458 5.163652 CCCGGTTAAAGAAACATCTCCAATC 60.164 44.000 0.00 0.00 40.08 2.67
7321 9459 5.414454 CCGGTTAAAGAAACATCTCCAATCA 59.586 40.000 0.00 0.00 40.08 2.57
7338 9476 2.791383 TCAGTTGCAACCAAAATCCG 57.209 45.000 25.62 4.97 31.68 4.18
7342 9480 1.067821 GTTGCAACCAAAATCCGTGGA 59.932 47.619 19.15 0.00 39.62 4.02
7356 9494 0.031314 CGTGGATCATCTGTCCTCCG 59.969 60.000 0.00 0.00 36.68 4.63
7360 9498 0.461548 GATCATCTGTCCTCCGCACA 59.538 55.000 0.00 0.00 0.00 4.57
7397 9536 3.813724 AGTGAGCGGTTCTTAAAAACTCC 59.186 43.478 0.00 0.00 0.00 3.85
7413 9552 9.660180 TTAAAAACTCCATAAACTTTTGCTGTT 57.340 25.926 0.00 0.00 0.00 3.16
7436 9575 8.154203 TGTTATATCAAAGTGGAAGTGTCTTGA 58.846 33.333 0.00 0.00 0.00 3.02
7437 9576 9.167311 GTTATATCAAAGTGGAAGTGTCTTGAT 57.833 33.333 0.00 0.00 0.00 2.57
7438 9577 7.856145 ATATCAAAGTGGAAGTGTCTTGATC 57.144 36.000 0.00 0.00 0.00 2.92
7439 9578 5.034852 TCAAAGTGGAAGTGTCTTGATCA 57.965 39.130 0.00 0.00 0.00 2.92
7441 9580 5.471116 TCAAAGTGGAAGTGTCTTGATCATG 59.529 40.000 0.00 0.00 0.00 3.07
7443 9582 3.076621 GTGGAAGTGTCTTGATCATGCA 58.923 45.455 0.00 0.00 0.00 3.96
7451 9590 6.211515 AGTGTCTTGATCATGCAAAGTTTTC 58.788 36.000 0.00 0.00 0.00 2.29
7466 9605 5.959618 AAGTTTTCTATTTTGAGGGACCG 57.040 39.130 0.00 0.00 0.00 4.79
7481 9620 2.593436 CCGTTCGGTTTGCAGGGT 60.593 61.111 2.82 0.00 0.00 4.34
7516 9655 3.589579 GCATGATGTGCGGGAACA 58.410 55.556 0.00 0.00 45.23 3.18
7517 9656 1.882311 GCATGATGTGCGGGAACAA 59.118 52.632 0.00 0.00 45.23 2.83
7518 9657 0.179156 GCATGATGTGCGGGAACAAG 60.179 55.000 0.00 0.00 45.23 3.16
7534 9673 5.301805 GGGAACAAGAAAATCAACTTCCTCA 59.698 40.000 0.00 0.00 0.00 3.86
7539 9678 8.242729 ACAAGAAAATCAACTTCCTCATTTCT 57.757 30.769 0.00 0.00 37.27 2.52
7540 9679 8.699130 ACAAGAAAATCAACTTCCTCATTTCTT 58.301 29.630 0.00 0.00 42.90 2.52
7572 9711 2.310945 CCCATGCCTATCCCAGATCAAT 59.689 50.000 0.00 0.00 0.00 2.57
7703 9843 5.588648 ACGTTGGTCAAATTATCGATCCAAT 59.411 36.000 13.63 2.22 36.20 3.16
7708 9848 9.519191 TTGGTCAAATTATCGATCCAATGATAT 57.481 29.630 0.00 0.00 0.00 1.63
7709 9849 8.949177 TGGTCAAATTATCGATCCAATGATATG 58.051 33.333 0.00 0.00 0.00 1.78
7725 9865 7.264947 CAATGATATGGGTGGGACTTTTAAAC 58.735 38.462 0.00 0.00 0.00 2.01
7727 9867 1.984066 TGGGTGGGACTTTTAAACCG 58.016 50.000 0.00 0.00 0.00 4.44
7742 9882 6.453926 TTTAAACCGGAAAGCAGTTAGTTT 57.546 33.333 9.46 0.00 0.00 2.66
7743 9883 4.563337 AAACCGGAAAGCAGTTAGTTTC 57.437 40.909 9.46 0.00 32.79 2.78
7755 9895 6.479884 AGCAGTTAGTTTCAGAATCCAATCT 58.520 36.000 0.00 0.00 0.00 2.40
7777 9917 3.080647 GGTGGAAGCCCGATGTAAG 57.919 57.895 0.00 0.00 34.29 2.34
7778 9918 0.463833 GGTGGAAGCCCGATGTAAGG 60.464 60.000 0.00 0.00 34.29 2.69
7783 9923 2.185867 GCCCGATGTAAGGCGTCA 59.814 61.111 0.00 0.00 39.87 4.35
7784 9924 1.448893 GCCCGATGTAAGGCGTCAA 60.449 57.895 0.00 0.00 39.87 3.18
7785 9925 0.814010 GCCCGATGTAAGGCGTCAAT 60.814 55.000 0.00 0.00 39.87 2.57
7786 9926 1.663695 CCCGATGTAAGGCGTCAATT 58.336 50.000 0.00 0.00 32.74 2.32
7787 9927 1.330521 CCCGATGTAAGGCGTCAATTG 59.669 52.381 0.00 0.00 32.74 2.32
7788 9928 1.330521 CCGATGTAAGGCGTCAATTGG 59.669 52.381 5.42 0.00 32.74 3.16
7789 9929 1.330521 CGATGTAAGGCGTCAATTGGG 59.669 52.381 5.42 0.00 32.74 4.12
7790 9930 1.065551 GATGTAAGGCGTCAATTGGGC 59.934 52.381 5.42 9.55 33.40 5.36
7791 9931 1.302383 TGTAAGGCGTCAATTGGGCG 61.302 55.000 15.53 15.53 0.00 6.13
7792 9932 1.022451 GTAAGGCGTCAATTGGGCGA 61.022 55.000 21.35 6.78 0.00 5.54
7793 9933 0.321741 TAAGGCGTCAATTGGGCGAA 60.322 50.000 21.35 6.67 0.00 4.70
7794 9934 0.965363 AAGGCGTCAATTGGGCGAAT 60.965 50.000 21.35 9.81 0.00 3.34
7795 9935 0.107410 AGGCGTCAATTGGGCGAATA 60.107 50.000 21.35 0.00 0.00 1.75
7796 9936 0.736053 GGCGTCAATTGGGCGAATAA 59.264 50.000 21.35 0.00 0.00 1.40
7797 9937 1.133407 GGCGTCAATTGGGCGAATAAA 59.867 47.619 21.35 0.00 0.00 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 7.671495 AACTTTACCATTGGATTGAAAATGC 57.329 32.000 10.37 0.00 33.34 3.56
62 63 2.690326 CGGGACACGGATTCAATCC 58.310 57.895 6.32 6.32 46.22 3.01
74 75 1.609635 ATATGTGTCACGCCGGGACA 61.610 55.000 19.84 19.84 42.62 4.02
76 77 1.142965 CATATGTGTCACGCCGGGA 59.857 57.895 2.18 0.00 0.00 5.14
81 82 2.797156 GGATCTGTCATATGTGTCACGC 59.203 50.000 1.90 0.00 0.00 5.34
94 95 1.063764 GTGTACCTCGTCGGATCTGTC 59.936 57.143 0.42 0.00 36.31 3.51
100 101 2.032528 ACGGTGTACCTCGTCGGA 59.967 61.111 5.00 0.00 34.20 4.55
116 117 1.672145 GCAAGACGGTTCCTGTAGGAC 60.672 57.143 0.00 0.00 45.39 3.85
120 121 0.606604 GGAGCAAGACGGTTCCTGTA 59.393 55.000 0.00 0.00 35.50 2.74
123 124 0.250513 GATGGAGCAAGACGGTTCCT 59.749 55.000 0.00 0.00 38.80 3.36
127 128 1.625818 AGAAAGATGGAGCAAGACGGT 59.374 47.619 0.00 0.00 0.00 4.83
128 129 2.393271 AGAAAGATGGAGCAAGACGG 57.607 50.000 0.00 0.00 0.00 4.79
129 130 2.417933 CCAAGAAAGATGGAGCAAGACG 59.582 50.000 0.00 0.00 40.56 4.18
130 131 3.679389 TCCAAGAAAGATGGAGCAAGAC 58.321 45.455 0.00 0.00 41.98 3.01
150 151 3.126831 CCGTTGTGGCAGATCTAGAATC 58.873 50.000 0.00 0.00 0.00 2.52
166 168 6.313905 ACATTTCTCTTAGTATTGCTCCGTTG 59.686 38.462 0.00 0.00 0.00 4.10
167 169 6.407202 ACATTTCTCTTAGTATTGCTCCGTT 58.593 36.000 0.00 0.00 0.00 4.44
169 171 6.910536 AACATTTCTCTTAGTATTGCTCCG 57.089 37.500 0.00 0.00 0.00 4.63
170 172 7.713073 AGCTAACATTTCTCTTAGTATTGCTCC 59.287 37.037 0.00 0.00 0.00 4.70
171 173 8.655651 AGCTAACATTTCTCTTAGTATTGCTC 57.344 34.615 0.00 0.00 0.00 4.26
196 744 8.446599 ACATTTCTCCTCTCGTAAAAAGAAAA 57.553 30.769 0.00 0.00 36.61 2.29
200 748 8.989980 AGTTAACATTTCTCCTCTCGTAAAAAG 58.010 33.333 8.61 0.00 0.00 2.27
205 753 7.223260 TCAAGTTAACATTTCTCCTCTCGTA 57.777 36.000 8.61 0.00 0.00 3.43
206 754 6.097915 TCAAGTTAACATTTCTCCTCTCGT 57.902 37.500 8.61 0.00 0.00 4.18
207 755 6.591834 ACATCAAGTTAACATTTCTCCTCTCG 59.408 38.462 8.61 0.00 0.00 4.04
208 756 7.913674 ACATCAAGTTAACATTTCTCCTCTC 57.086 36.000 8.61 0.00 0.00 3.20
210 758 7.544566 TCGTACATCAAGTTAACATTTCTCCTC 59.455 37.037 8.61 0.00 0.00 3.71
212 760 7.591006 TCGTACATCAAGTTAACATTTCTCC 57.409 36.000 8.61 0.00 0.00 3.71
224 772 9.383519 ACATTTCTATCATTTCGTACATCAAGT 57.616 29.630 0.00 0.00 0.00 3.16
235 783 6.920210 GGCCAGCTTAACATTTCTATCATTTC 59.080 38.462 0.00 0.00 0.00 2.17
254 802 1.743252 CTCTGTTTCTCCGGCCAGC 60.743 63.158 2.24 0.00 0.00 4.85
257 805 0.321996 ACTTCTCTGTTTCTCCGGCC 59.678 55.000 0.00 0.00 0.00 6.13
258 806 1.270358 ACACTTCTCTGTTTCTCCGGC 60.270 52.381 0.00 0.00 0.00 6.13
259 807 2.821991 ACACTTCTCTGTTTCTCCGG 57.178 50.000 0.00 0.00 0.00 5.14
260 808 5.290386 AGTTAACACTTCTCTGTTTCTCCG 58.710 41.667 8.61 0.00 35.87 4.63
261 809 8.142551 TCTTAGTTAACACTTCTCTGTTTCTCC 58.857 37.037 8.61 0.00 35.87 3.71
262 810 9.530633 TTCTTAGTTAACACTTCTCTGTTTCTC 57.469 33.333 8.61 0.00 35.87 2.87
275 825 9.403110 TGTCTCGTCTTAATTCTTAGTTAACAC 57.597 33.333 8.61 0.00 0.00 3.32
295 845 2.225068 ATAGAACGGGCATTGTCTCG 57.775 50.000 0.00 0.00 0.00 4.04
314 864 7.499232 CCCTCTCTTTTCTTCTTTTGTGTAGAA 59.501 37.037 0.00 0.00 0.00 2.10
355 906 7.611467 TCTCTCCTGCATTTTCAGCTTAATAAA 59.389 33.333 0.00 0.00 32.87 1.40
356 907 7.112122 TCTCTCCTGCATTTTCAGCTTAATAA 58.888 34.615 0.00 0.00 32.87 1.40
357 908 6.653020 TCTCTCCTGCATTTTCAGCTTAATA 58.347 36.000 0.00 0.00 32.87 0.98
358 909 5.503927 TCTCTCCTGCATTTTCAGCTTAAT 58.496 37.500 0.00 0.00 32.87 1.40
384 935 0.036010 ATGCAGAAAGAGACCGGGTG 60.036 55.000 3.30 0.00 0.00 4.61
385 936 0.036010 CATGCAGAAAGAGACCGGGT 60.036 55.000 6.32 0.00 0.00 5.28
386 937 1.372087 GCATGCAGAAAGAGACCGGG 61.372 60.000 14.21 0.00 0.00 5.73
387 938 1.699656 CGCATGCAGAAAGAGACCGG 61.700 60.000 19.57 0.00 0.00 5.28
388 939 1.712081 CGCATGCAGAAAGAGACCG 59.288 57.895 19.57 0.00 0.00 4.79
389 940 1.427020 GCGCATGCAGAAAGAGACC 59.573 57.895 19.57 0.00 42.15 3.85
415 977 1.137825 CTTGCCGGTCTCTCGACTC 59.862 63.158 1.90 0.00 40.10 3.36
440 1002 1.135199 CCATCATTGCTTCGCTGCTTT 60.135 47.619 0.00 0.00 0.00 3.51
759 1338 1.901464 GTGTGCATTTCGGGGTGGT 60.901 57.895 0.00 0.00 0.00 4.16
810 1389 3.412386 AGCTGCTGGTTTGGTTTAGTAG 58.588 45.455 0.00 0.00 0.00 2.57
867 1446 0.728843 AGAGTATGGGGGAAGGGGAA 59.271 55.000 0.00 0.00 0.00 3.97
868 1447 0.728843 AAGAGTATGGGGGAAGGGGA 59.271 55.000 0.00 0.00 0.00 4.81
869 1448 1.608425 AAAGAGTATGGGGGAAGGGG 58.392 55.000 0.00 0.00 0.00 4.79
900 1479 4.831307 GTCGACCGACGCAGCGAT 62.831 66.667 24.65 5.58 42.26 4.58
1017 1604 3.548214 CGTTCTCGATCCGCTTTATCTCA 60.548 47.826 0.00 0.00 39.71 3.27
1203 1792 1.876849 AGAGAGACATGGATGGTGCT 58.123 50.000 0.00 0.00 0.00 4.40
1204 1793 2.286872 CAAGAGAGACATGGATGGTGC 58.713 52.381 0.00 0.00 0.00 5.01
1205 1794 2.093075 AGCAAGAGAGACATGGATGGTG 60.093 50.000 0.00 0.00 0.00 4.17
1206 1795 2.194859 AGCAAGAGAGACATGGATGGT 58.805 47.619 0.00 0.00 0.00 3.55
1273 1867 4.547671 AGCTGGCTTATGTTAGAGAGGTA 58.452 43.478 0.00 0.00 0.00 3.08
1274 1868 3.379452 AGCTGGCTTATGTTAGAGAGGT 58.621 45.455 0.00 0.00 0.00 3.85
1320 1914 2.372264 CCCTTGATGCTGCAAGTACAT 58.628 47.619 6.36 0.00 42.84 2.29
1321 1915 1.614051 CCCCTTGATGCTGCAAGTACA 60.614 52.381 6.36 2.26 42.84 2.90
1421 2020 8.517878 TGAAGCTAAAGAAAAAGATGGATGAAG 58.482 33.333 0.00 0.00 0.00 3.02
1422 2021 8.408043 TGAAGCTAAAGAAAAAGATGGATGAA 57.592 30.769 0.00 0.00 0.00 2.57
1423 2022 8.299570 GTTGAAGCTAAAGAAAAAGATGGATGA 58.700 33.333 0.00 0.00 0.00 2.92
1445 2046 8.810990 TTAAAAGGGAAAGTAGAAAGTGTTGA 57.189 30.769 0.00 0.00 0.00 3.18
1565 2172 2.955660 ACCAAAACGAATCAGCCAAAGA 59.044 40.909 0.00 0.00 0.00 2.52
1687 2294 7.138054 AGAATGGTTCGGATATAAAGAAGGT 57.862 36.000 0.00 0.00 34.02 3.50
1697 2304 4.460263 CCCATGAAAGAATGGTTCGGATA 58.540 43.478 0.00 0.00 44.93 2.59
1698 2305 3.290710 CCCATGAAAGAATGGTTCGGAT 58.709 45.455 0.00 0.00 44.93 4.18
1699 2306 2.620367 CCCCATGAAAGAATGGTTCGGA 60.620 50.000 0.00 0.00 44.93 4.55
1700 2307 1.750778 CCCCATGAAAGAATGGTTCGG 59.249 52.381 0.00 0.00 44.93 4.30
1701 2308 2.722094 TCCCCATGAAAGAATGGTTCG 58.278 47.619 0.00 0.00 44.93 3.95
1713 2320 3.777087 TGAAGCAAAAGAATCCCCATGA 58.223 40.909 0.00 0.00 0.00 3.07
1714 2321 4.439057 CATGAAGCAAAAGAATCCCCATG 58.561 43.478 0.00 0.00 0.00 3.66
1715 2322 3.453353 CCATGAAGCAAAAGAATCCCCAT 59.547 43.478 0.00 0.00 0.00 4.00
1717 2324 2.169144 CCCATGAAGCAAAAGAATCCCC 59.831 50.000 0.00 0.00 0.00 4.81
1718 2325 2.169144 CCCCATGAAGCAAAAGAATCCC 59.831 50.000 0.00 0.00 0.00 3.85
1719 2326 3.099141 TCCCCATGAAGCAAAAGAATCC 58.901 45.455 0.00 0.00 0.00 3.01
1720 2327 5.128335 AGAATCCCCATGAAGCAAAAGAATC 59.872 40.000 0.00 0.00 0.00 2.52
1721 2328 5.028131 AGAATCCCCATGAAGCAAAAGAAT 58.972 37.500 0.00 0.00 0.00 2.40
1722 2329 4.419282 AGAATCCCCATGAAGCAAAAGAA 58.581 39.130 0.00 0.00 0.00 2.52
1723 2330 4.051661 AGAATCCCCATGAAGCAAAAGA 57.948 40.909 0.00 0.00 0.00 2.52
1724 2331 4.813750 AAGAATCCCCATGAAGCAAAAG 57.186 40.909 0.00 0.00 0.00 2.27
1725 2332 5.307204 CAAAAGAATCCCCATGAAGCAAAA 58.693 37.500 0.00 0.00 0.00 2.44
1726 2333 4.803588 GCAAAAGAATCCCCATGAAGCAAA 60.804 41.667 0.00 0.00 0.00 3.68
1727 2334 3.306919 GCAAAAGAATCCCCATGAAGCAA 60.307 43.478 0.00 0.00 0.00 3.91
1728 2335 2.234414 GCAAAAGAATCCCCATGAAGCA 59.766 45.455 0.00 0.00 0.00 3.91
1729 2336 2.498885 AGCAAAAGAATCCCCATGAAGC 59.501 45.455 0.00 0.00 0.00 3.86
1730 2337 4.221262 TGAAGCAAAAGAATCCCCATGAAG 59.779 41.667 0.00 0.00 0.00 3.02
1731 2338 4.158786 TGAAGCAAAAGAATCCCCATGAA 58.841 39.130 0.00 0.00 0.00 2.57
1732 2339 3.777087 TGAAGCAAAAGAATCCCCATGA 58.223 40.909 0.00 0.00 0.00 3.07
1733 2340 4.439057 CATGAAGCAAAAGAATCCCCATG 58.561 43.478 0.00 0.00 0.00 3.66
1734 2341 3.453353 CCATGAAGCAAAAGAATCCCCAT 59.547 43.478 0.00 0.00 0.00 4.00
1735 2342 2.833338 CCATGAAGCAAAAGAATCCCCA 59.167 45.455 0.00 0.00 0.00 4.96
1736 2343 2.169144 CCCATGAAGCAAAAGAATCCCC 59.831 50.000 0.00 0.00 0.00 4.81
1737 2344 2.169144 CCCCATGAAGCAAAAGAATCCC 59.831 50.000 0.00 0.00 0.00 3.85
1738 2345 3.099141 TCCCCATGAAGCAAAAGAATCC 58.901 45.455 0.00 0.00 0.00 3.01
1739 2346 5.128335 AGAATCCCCATGAAGCAAAAGAATC 59.872 40.000 0.00 0.00 0.00 2.52
1740 2347 5.028131 AGAATCCCCATGAAGCAAAAGAAT 58.972 37.500 0.00 0.00 0.00 2.40
1741 2348 4.419282 AGAATCCCCATGAAGCAAAAGAA 58.581 39.130 0.00 0.00 0.00 2.52
1742 2349 4.019174 GAGAATCCCCATGAAGCAAAAGA 58.981 43.478 0.00 0.00 0.00 2.52
1743 2350 4.382345 GAGAATCCCCATGAAGCAAAAG 57.618 45.455 0.00 0.00 0.00 2.27
1772 2379 7.264221 TCGGCATCAAAACAATATAAATTGCT 58.736 30.769 0.00 0.00 45.41 3.91
1781 2388 4.270084 GTCGATCTCGGCATCAAAACAATA 59.730 41.667 0.00 0.00 44.43 1.90
1823 2430 2.286772 GCCTGCGATGGGTATAAAAACG 60.287 50.000 0.00 0.00 0.00 3.60
1828 2435 2.571212 CTTTGCCTGCGATGGGTATAA 58.429 47.619 0.00 0.00 0.00 0.98
1833 2440 1.454479 ATCCTTTGCCTGCGATGGG 60.454 57.895 10.48 2.92 0.00 4.00
1900 2507 0.447801 GAGCGGCATCGACATTTTGT 59.552 50.000 1.45 0.00 39.00 2.83
1977 2584 5.057149 GCTAGGAATCGAAGCCTAAATCAA 58.943 41.667 15.07 0.00 36.39 2.57
2058 2665 1.150986 AGATCTACCATGGGGCTAGCT 59.849 52.381 18.09 3.59 37.90 3.32
2059 2666 1.650528 AGATCTACCATGGGGCTAGC 58.349 55.000 18.09 6.04 37.90 3.42
2060 2667 5.519808 TGTATAGATCTACCATGGGGCTAG 58.480 45.833 18.09 9.10 37.90 3.42
2065 2672 6.127869 CGAGAACTGTATAGATCTACCATGGG 60.128 46.154 18.09 0.00 36.33 4.00
2066 2673 6.655425 TCGAGAACTGTATAGATCTACCATGG 59.345 42.308 11.19 11.19 36.33 3.66
2067 2674 7.674471 TCGAGAACTGTATAGATCTACCATG 57.326 40.000 4.10 0.00 36.33 3.66
2068 2675 8.325787 AGATCGAGAACTGTATAGATCTACCAT 58.674 37.037 4.10 0.00 41.81 3.55
2468 3150 1.537202 GCTGACACAAGGCAAGGTAAG 59.463 52.381 0.00 0.00 0.00 2.34
2570 3255 9.787532 AAAATTAATGTGACCGAATGATTGTAG 57.212 29.630 0.00 0.00 0.00 2.74
2907 3610 5.875910 TGTAGAGTGTAGAGTCTAGAGTTGC 59.124 44.000 4.72 2.24 35.21 4.17
2918 3621 8.684386 TGGATCTAGAATTGTAGAGTGTAGAG 57.316 38.462 16.53 0.00 32.68 2.43
3386 4097 4.952262 TCATTCAGATCGAAAAGCCAAG 57.048 40.909 0.00 0.00 37.12 3.61
3387 4098 5.393352 CCATTCATTCAGATCGAAAAGCCAA 60.393 40.000 0.00 0.00 37.12 4.52
3545 4256 1.135527 CCACGCGGACCTTAGAACATA 59.864 52.381 12.47 0.00 0.00 2.29
3553 4264 0.393808 ATTAATGCCACGCGGACCTT 60.394 50.000 12.47 0.94 0.00 3.50
3561 4272 2.346803 AGCGCCTATATTAATGCCACG 58.653 47.619 2.29 0.00 0.00 4.94
3611 4324 2.165167 GGGGTTTAACCTCCTTTTCGG 58.835 52.381 14.27 0.00 38.64 4.30
3735 4449 8.219868 TCATGGGATCAGTAAAACATATGTGAT 58.780 33.333 9.63 6.54 0.00 3.06
3736 4450 7.498900 GTCATGGGATCAGTAAAACATATGTGA 59.501 37.037 9.63 1.30 0.00 3.58
3890 4612 8.547173 AGTTCCAATATTTTTGCCAATTATCCA 58.453 29.630 0.00 0.00 0.00 3.41
4018 4742 4.185467 ACATCGCAGATCTCATATGTCC 57.815 45.455 1.90 0.00 45.12 4.02
4033 4757 9.144085 CTGTTTTATCGTTTAGATTAACATCGC 57.856 33.333 0.00 0.00 39.59 4.58
4098 4825 3.477530 AGCATATAAAAACGGAGGGAGC 58.522 45.455 0.00 0.00 0.00 4.70
4132 4859 2.367567 AGTTTGACCCGAGACAAAGCTA 59.632 45.455 0.00 0.00 38.11 3.32
4133 4860 1.141053 AGTTTGACCCGAGACAAAGCT 59.859 47.619 0.00 0.00 38.11 3.74
4134 4861 1.594331 AGTTTGACCCGAGACAAAGC 58.406 50.000 0.00 0.00 38.11 3.51
4135 4862 3.877508 AGAAAGTTTGACCCGAGACAAAG 59.122 43.478 0.00 0.00 38.11 2.77
4307 5043 4.620982 GCATGTTTGCTTTGACCTAAGTT 58.379 39.130 0.00 0.00 45.77 2.66
4322 5058 7.653647 TCTGTTTTAATTTACTCCGCATGTTT 58.346 30.769 0.00 0.00 0.00 2.83
4325 5061 7.072177 TCTCTGTTTTAATTTACTCCGCATG 57.928 36.000 0.00 0.00 0.00 4.06
4339 5075 7.320399 TCATCAAATACTCGCTCTCTGTTTTA 58.680 34.615 0.00 0.00 0.00 1.52
4345 5081 4.736168 GCACTCATCAAATACTCGCTCTCT 60.736 45.833 0.00 0.00 0.00 3.10
4349 5085 3.251479 TGCACTCATCAAATACTCGCT 57.749 42.857 0.00 0.00 0.00 4.93
4480 5216 5.129485 AGGTAGCACTAATCAAGTACATGCT 59.871 40.000 0.00 0.00 37.47 3.79
4525 5421 7.781548 ACTTAACTTGACTAAAACATCACGT 57.218 32.000 0.00 0.00 0.00 4.49
4529 5425 9.170584 GCAGAAACTTAACTTGACTAAAACATC 57.829 33.333 0.00 0.00 0.00 3.06
4567 5463 6.846283 CGGCTAACATTTTTCTAGCTTAATCG 59.154 38.462 0.00 0.00 38.47 3.34
4570 5466 5.355910 CCCGGCTAACATTTTTCTAGCTTAA 59.644 40.000 0.00 0.00 38.47 1.85
4663 5566 9.159364 CATACATCATTCTGTACATAGGAATGG 57.841 37.037 24.75 16.89 43.52 3.16
4689 5592 2.279582 TACTCGCTGCACTCTTAAGC 57.720 50.000 0.00 0.00 0.00 3.09
4735 5638 5.351189 GCAAAAAGAAAAGGCAAGAGAAACA 59.649 36.000 0.00 0.00 0.00 2.83
4772 5675 2.612972 CCGGTCTAGAACTGTTGCACAT 60.613 50.000 6.16 0.00 31.77 3.21
4974 5878 5.351948 TGCAGCTTGTTGTGGATATACTA 57.648 39.130 0.00 0.00 0.00 1.82
4991 5895 0.537188 TACTAGTTCCCTGCTGCAGC 59.463 55.000 31.89 31.89 42.50 5.25
5028 5936 0.039888 CCGTTTTAACCAAGTGCGGG 60.040 55.000 0.00 0.00 34.77 6.13
5031 5939 0.662077 CCGCCGTTTTAACCAAGTGC 60.662 55.000 0.00 0.00 0.00 4.40
5040 5952 1.001887 AATGGAGGCCGCCGTTTTA 60.002 52.632 25.84 6.01 33.40 1.52
5229 6144 4.250464 CATGCTGTTTTGGATCTTGCATT 58.750 39.130 0.00 0.00 37.54 3.56
5247 6162 4.645535 TCCCTCTGCTCAATAATACATGC 58.354 43.478 0.00 0.00 0.00 4.06
5306 6228 9.926158 TGCACATAAAATTATGAGTTGTTTCAT 57.074 25.926 17.63 0.00 42.38 2.57
5313 6235 9.123902 TCTAGCATGCACATAAAATTATGAGTT 57.876 29.630 21.98 0.00 42.38 3.01
5373 6295 5.388408 TTTCACATATGTGCATGCTGAAA 57.612 34.783 27.71 19.68 45.25 2.69
5403 6331 6.691754 TCTTGAGAACACAAACAAATGCTA 57.308 33.333 0.00 0.00 0.00 3.49
5405 6333 6.645700 TTTCTTGAGAACACAAACAAATGC 57.354 33.333 0.00 0.00 33.13 3.56
5455 6385 7.199167 TCAGAGTAAAAATCAGATGGATGGA 57.801 36.000 0.00 0.00 36.02 3.41
5603 7236 9.487790 GTGAATTGTTGAAAATCCCTTTTGATA 57.512 29.630 0.00 0.00 34.73 2.15
5606 7239 6.767423 AGGTGAATTGTTGAAAATCCCTTTTG 59.233 34.615 0.00 0.00 34.73 2.44
5607 7240 6.899089 AGGTGAATTGTTGAAAATCCCTTTT 58.101 32.000 0.00 0.00 37.28 2.27
5608 7241 6.499106 AGGTGAATTGTTGAAAATCCCTTT 57.501 33.333 0.00 0.00 0.00 3.11
5609 7242 5.278957 CGAGGTGAATTGTTGAAAATCCCTT 60.279 40.000 0.00 0.00 0.00 3.95
5620 7253 4.037923 AGCATTGTTTCGAGGTGAATTGTT 59.962 37.500 0.00 0.00 36.22 2.83
5628 7261 3.502211 CCAACTAAGCATTGTTTCGAGGT 59.498 43.478 0.00 0.00 0.00 3.85
5829 7887 3.589288 AGAATGAGTAGGAAAACCTGGCT 59.411 43.478 0.00 0.00 0.00 4.75
5864 7923 3.503748 GTCATTGAGAAACCTCCCAAGTG 59.496 47.826 0.00 0.00 0.00 3.16
5870 7929 3.507233 TGCATTGTCATTGAGAAACCTCC 59.493 43.478 0.00 0.00 0.00 4.30
5917 7985 4.185394 ACATGTCGCGGATACACAATTTA 58.815 39.130 6.13 0.00 0.00 1.40
5977 8047 3.753272 TGACAAAAGCCAGCTGAATCTAC 59.247 43.478 17.39 0.25 0.00 2.59
5982 8052 2.030893 CGAATGACAAAAGCCAGCTGAA 60.031 45.455 17.39 0.00 0.00 3.02
5984 8054 1.401931 CCGAATGACAAAAGCCAGCTG 60.402 52.381 6.78 6.78 0.00 4.24
5985 8055 0.883833 CCGAATGACAAAAGCCAGCT 59.116 50.000 0.00 0.00 0.00 4.24
5986 8056 0.598065 ACCGAATGACAAAAGCCAGC 59.402 50.000 0.00 0.00 0.00 4.85
6042 8112 2.914097 GCAACAAGCTGCAGGGGT 60.914 61.111 17.12 0.00 42.17 4.95
6062 8157 5.352284 AGAGAAGCATGAATTAGTACACGG 58.648 41.667 0.00 0.00 0.00 4.94
6100 8195 3.209410 GGGAGTGCTTCACCTGAATATG 58.791 50.000 0.00 0.00 34.49 1.78
6565 8662 1.871676 CATGGTCAGCTCGGATTCATG 59.128 52.381 0.00 0.00 0.00 3.07
6566 8663 1.764723 TCATGGTCAGCTCGGATTCAT 59.235 47.619 0.00 0.00 0.00 2.57
6608 8705 3.466314 TCCTCGCGCATGCCCTAA 61.466 61.111 13.15 0.00 38.08 2.69
6609 8706 4.221422 GTCCTCGCGCATGCCCTA 62.221 66.667 13.15 0.00 38.08 3.53
6638 8735 2.359478 GCCGGGTTGTCCACGAAT 60.359 61.111 2.18 0.00 34.36 3.34
6806 8927 5.669164 ATAAGCTAGTAGGAGCAATAGCC 57.331 43.478 0.00 0.00 45.43 3.93
6812 8933 7.496263 CACTCGATATATAAGCTAGTAGGAGCA 59.504 40.741 0.00 0.00 45.43 4.26
6834 8958 8.547967 TTCTTATTGTGGTAACTTGATCACTC 57.452 34.615 0.00 0.00 37.61 3.51
6865 9002 9.033481 CATTTCACAAATACAAACACACAGATT 57.967 29.630 0.00 0.00 0.00 2.40
6866 9003 7.169645 GCATTTCACAAATACAAACACACAGAT 59.830 33.333 0.00 0.00 0.00 2.90
6983 9121 5.106038 ACAACCAAAGTCATAGCACATCATG 60.106 40.000 0.00 0.00 0.00 3.07
6989 9127 3.365364 GCTCACAACCAAAGTCATAGCAC 60.365 47.826 0.00 0.00 0.00 4.40
7038 9176 8.805175 TGAAATGATCATCACAAGTACCAAAAT 58.195 29.630 9.06 0.00 31.50 1.82
7098 9236 5.182190 GCAAACCCTCCTTTTTCAAAAACAA 59.818 36.000 0.00 0.00 0.00 2.83
7100 9238 4.095782 GGCAAACCCTCCTTTTTCAAAAAC 59.904 41.667 0.00 0.00 0.00 2.43
7102 9240 3.879998 GGCAAACCCTCCTTTTTCAAAA 58.120 40.909 0.00 0.00 0.00 2.44
7137 9275 8.467963 TCAATATGGTTGTATGCATCATTTCT 57.532 30.769 0.19 0.00 0.00 2.52
7166 9304 5.063880 ACCGGATGATTAATGCTCTAAACC 58.936 41.667 9.46 0.00 0.00 3.27
7175 9313 5.628193 GTGTACGACTACCGGATGATTAATG 59.372 44.000 9.46 0.00 43.93 1.90
7181 9319 2.112380 TGTGTACGACTACCGGATGA 57.888 50.000 9.46 0.00 43.93 2.92
7182 9320 2.925578 TTGTGTACGACTACCGGATG 57.074 50.000 9.46 1.99 43.93 3.51
7183 9321 4.082081 TCAATTTGTGTACGACTACCGGAT 60.082 41.667 9.46 0.00 43.93 4.18
7184 9322 3.255395 TCAATTTGTGTACGACTACCGGA 59.745 43.478 9.46 0.00 43.93 5.14
7185 9323 3.365820 GTCAATTTGTGTACGACTACCGG 59.634 47.826 0.00 0.00 43.93 5.28
7186 9324 3.982701 TGTCAATTTGTGTACGACTACCG 59.017 43.478 0.00 0.00 45.44 4.02
7187 9325 4.986659 ACTGTCAATTTGTGTACGACTACC 59.013 41.667 0.00 0.00 0.00 3.18
7188 9326 7.627585 TTACTGTCAATTTGTGTACGACTAC 57.372 36.000 0.00 0.00 0.00 2.73
7189 9327 9.911138 TTATTACTGTCAATTTGTGTACGACTA 57.089 29.630 0.00 0.00 0.00 2.59
7190 9328 8.821147 TTATTACTGTCAATTTGTGTACGACT 57.179 30.769 0.00 0.00 0.00 4.18
7191 9329 8.918658 TCTTATTACTGTCAATTTGTGTACGAC 58.081 33.333 0.00 0.00 0.00 4.34
7192 9330 9.135843 CTCTTATTACTGTCAATTTGTGTACGA 57.864 33.333 0.00 0.00 0.00 3.43
7193 9331 7.898309 GCTCTTATTACTGTCAATTTGTGTACG 59.102 37.037 0.00 0.00 0.00 3.67
7194 9332 7.898309 CGCTCTTATTACTGTCAATTTGTGTAC 59.102 37.037 0.00 0.00 0.00 2.90
7195 9333 7.412563 GCGCTCTTATTACTGTCAATTTGTGTA 60.413 37.037 0.00 0.00 0.00 2.90
7196 9334 6.620733 GCGCTCTTATTACTGTCAATTTGTGT 60.621 38.462 0.00 0.00 0.00 3.72
7197 9335 5.734498 GCGCTCTTATTACTGTCAATTTGTG 59.266 40.000 0.00 0.00 0.00 3.33
7205 9343 2.792116 GCTCTGCGCTCTTATTACTGTC 59.208 50.000 9.73 0.00 35.14 3.51
7220 9358 4.025647 GTGTATGGTTATTTCGAGCTCTGC 60.026 45.833 12.85 0.00 0.00 4.26
7240 9378 9.793252 GATTGCATCATTTTATCTTGTTAGTGT 57.207 29.630 0.00 0.00 0.00 3.55
7241 9379 9.791820 TGATTGCATCATTTTATCTTGTTAGTG 57.208 29.630 0.00 0.00 33.59 2.74
7281 9419 1.160329 CCGGGCTTGATGACGATTCC 61.160 60.000 0.00 0.00 0.00 3.01
7283 9421 0.035439 AACCGGGCTTGATGACGATT 60.035 50.000 6.32 0.00 0.00 3.34
7287 9425 2.706890 TCTTTAACCGGGCTTGATGAC 58.293 47.619 6.32 0.00 0.00 3.06
7293 9431 3.756963 GAGATGTTTCTTTAACCGGGCTT 59.243 43.478 6.32 0.00 35.81 4.35
7314 9452 4.502950 GGATTTTGGTTGCAACTGATTGGA 60.503 41.667 27.64 9.25 36.23 3.53
7315 9453 3.747529 GGATTTTGGTTGCAACTGATTGG 59.252 43.478 27.64 0.00 36.23 3.16
7318 9456 2.627699 ACGGATTTTGGTTGCAACTGAT 59.372 40.909 27.64 16.11 0.00 2.90
7320 9458 2.126467 CACGGATTTTGGTTGCAACTG 58.874 47.619 27.64 11.84 0.00 3.16
7321 9459 1.068434 CCACGGATTTTGGTTGCAACT 59.932 47.619 27.64 8.81 0.00 3.16
7338 9476 0.249657 GCGGAGGACAGATGATCCAC 60.250 60.000 0.00 0.00 38.86 4.02
7356 9494 3.372206 CACTATGAGTAGCCACTTTGTGC 59.628 47.826 0.00 0.00 34.21 4.57
7360 9498 3.429547 CGCTCACTATGAGTAGCCACTTT 60.430 47.826 7.62 0.00 45.94 2.66
7409 9548 8.446273 CAAGACACTTCCACTTTGATATAACAG 58.554 37.037 0.00 0.00 0.00 3.16
7413 9552 8.539544 TGATCAAGACACTTCCACTTTGATATA 58.460 33.333 0.00 0.00 0.00 0.86
7417 9556 5.034852 TGATCAAGACACTTCCACTTTGA 57.965 39.130 0.00 0.00 0.00 2.69
7418 9557 5.696822 CATGATCAAGACACTTCCACTTTG 58.303 41.667 0.00 0.00 0.00 2.77
7424 9563 4.217118 ACTTTGCATGATCAAGACACTTCC 59.783 41.667 0.00 0.00 0.00 3.46
7436 9575 7.820872 CCCTCAAAATAGAAAACTTTGCATGAT 59.179 33.333 0.00 0.00 31.51 2.45
7437 9576 7.015098 TCCCTCAAAATAGAAAACTTTGCATGA 59.985 33.333 0.00 0.00 31.51 3.07
7438 9577 7.116805 GTCCCTCAAAATAGAAAACTTTGCATG 59.883 37.037 0.00 0.00 31.51 4.06
7439 9578 7.154656 GTCCCTCAAAATAGAAAACTTTGCAT 58.845 34.615 0.00 0.00 31.51 3.96
7441 9580 5.926542 GGTCCCTCAAAATAGAAAACTTTGC 59.073 40.000 0.00 0.00 31.51 3.68
7443 9582 5.831525 ACGGTCCCTCAAAATAGAAAACTTT 59.168 36.000 0.00 0.00 0.00 2.66
7451 9590 2.277084 CCGAACGGTCCCTCAAAATAG 58.723 52.381 4.99 0.00 0.00 1.73
7466 9605 1.029681 AGAAACCCTGCAAACCGAAC 58.970 50.000 0.00 0.00 0.00 3.95
7500 9639 1.452110 TCTTGTTCCCGCACATCATG 58.548 50.000 0.00 0.00 0.00 3.07
7503 9642 3.057596 TGATTTTCTTGTTCCCGCACATC 60.058 43.478 0.00 0.00 0.00 3.06
7504 9643 2.890311 TGATTTTCTTGTTCCCGCACAT 59.110 40.909 0.00 0.00 0.00 3.21
7506 9645 3.049912 GTTGATTTTCTTGTTCCCGCAC 58.950 45.455 0.00 0.00 0.00 5.34
7507 9646 2.955660 AGTTGATTTTCTTGTTCCCGCA 59.044 40.909 0.00 0.00 0.00 5.69
7508 9647 3.643159 AGTTGATTTTCTTGTTCCCGC 57.357 42.857 0.00 0.00 0.00 6.13
7509 9648 4.278419 AGGAAGTTGATTTTCTTGTTCCCG 59.722 41.667 0.00 0.00 33.79 5.14
7510 9649 5.301805 TGAGGAAGTTGATTTTCTTGTTCCC 59.698 40.000 0.00 0.00 33.79 3.97
7511 9650 6.391227 TGAGGAAGTTGATTTTCTTGTTCC 57.609 37.500 0.00 0.00 33.54 3.62
7512 9651 8.877808 AAATGAGGAAGTTGATTTTCTTGTTC 57.122 30.769 0.00 0.00 0.00 3.18
7513 9652 8.699130 AGAAATGAGGAAGTTGATTTTCTTGTT 58.301 29.630 0.00 0.00 30.09 2.83
7514 9653 8.242729 AGAAATGAGGAAGTTGATTTTCTTGT 57.757 30.769 0.00 0.00 30.09 3.16
7515 9654 8.975439 CAAGAAATGAGGAAGTTGATTTTCTTG 58.025 33.333 16.24 16.24 45.43 3.02
7516 9655 8.699130 ACAAGAAATGAGGAAGTTGATTTTCTT 58.301 29.630 0.00 0.00 40.59 2.52
7517 9656 8.242729 ACAAGAAATGAGGAAGTTGATTTTCT 57.757 30.769 0.00 0.00 34.40 2.52
7518 9657 8.877808 AACAAGAAATGAGGAAGTTGATTTTC 57.122 30.769 0.00 0.00 0.00 2.29
7534 9673 5.003160 GCATGGGCCTTTTAAACAAGAAAT 58.997 37.500 4.53 0.00 0.00 2.17
7674 9813 6.971527 TCGATAATTTGACCAACGTAACAT 57.028 33.333 0.00 0.00 0.00 2.71
7694 9834 2.305635 CCCACCCATATCATTGGATCGA 59.694 50.000 0.00 0.00 39.25 3.59
7703 9843 5.265989 GGTTTAAAAGTCCCACCCATATCA 58.734 41.667 0.00 0.00 0.00 2.15
7708 9848 1.479021 CCGGTTTAAAAGTCCCACCCA 60.479 52.381 0.00 0.00 0.00 4.51
7709 9849 1.202915 TCCGGTTTAAAAGTCCCACCC 60.203 52.381 0.00 0.00 0.00 4.61
7725 9865 3.399330 TCTGAAACTAACTGCTTTCCGG 58.601 45.455 0.00 0.00 0.00 5.14
7727 9867 5.473504 TGGATTCTGAAACTAACTGCTTTCC 59.526 40.000 0.00 0.00 0.00 3.13
7760 9900 1.095807 GCCTTACATCGGGCTTCCAC 61.096 60.000 0.00 0.00 44.48 4.02
7761 9901 1.223487 GCCTTACATCGGGCTTCCA 59.777 57.895 0.00 0.00 44.48 3.53
7769 9909 1.330521 CCCAATTGACGCCTTACATCG 59.669 52.381 7.12 0.00 0.00 3.84
7770 9910 1.065551 GCCCAATTGACGCCTTACATC 59.934 52.381 7.12 0.00 0.00 3.06
7771 9911 1.102978 GCCCAATTGACGCCTTACAT 58.897 50.000 7.12 0.00 0.00 2.29
7772 9912 1.302383 CGCCCAATTGACGCCTTACA 61.302 55.000 7.12 0.00 0.00 2.41
7773 9913 1.022451 TCGCCCAATTGACGCCTTAC 61.022 55.000 7.12 0.00 0.00 2.34
7774 9914 0.321741 TTCGCCCAATTGACGCCTTA 60.322 50.000 7.12 0.00 0.00 2.69
7775 9915 0.965363 ATTCGCCCAATTGACGCCTT 60.965 50.000 7.12 0.00 0.00 4.35
7776 9916 0.107410 TATTCGCCCAATTGACGCCT 60.107 50.000 7.12 4.06 0.00 5.52
7777 9917 0.736053 TTATTCGCCCAATTGACGCC 59.264 50.000 7.12 0.00 0.00 5.68
7778 9918 2.553079 TTTATTCGCCCAATTGACGC 57.447 45.000 7.12 7.20 0.00 5.19


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.