Multiple sequence alignment - TraesCS7B01G286200

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS7B01G286200 chr7B 100.000 7441 0 0 1 7441 521565896 521573336 0.000000e+00 13742.0
1 TraesCS7B01G286200 chr7B 96.755 493 8 1 3039 3531 730214287 730214771 0.000000e+00 815.0
2 TraesCS7B01G286200 chr7B 95.536 112 5 0 2095 2206 547472772 547472661 5.930000e-41 180.0
3 TraesCS7B01G286200 chr7B 95.536 112 5 0 2095 2206 547549434 547549323 5.930000e-41 180.0
4 TraesCS7B01G286200 chr7B 93.966 116 7 0 2093 2208 536117436 536117551 7.670000e-40 176.0
5 TraesCS7B01G286200 chr7B 100.000 42 0 0 3900 3941 521569710 521569751 2.230000e-10 78.7
6 TraesCS7B01G286200 chr7B 100.000 42 0 0 3815 3856 521569795 521569836 2.230000e-10 78.7
7 TraesCS7B01G286200 chr7B 89.796 49 1 2 4043 4087 521569748 521569796 8.060000e-05 60.2
8 TraesCS7B01G286200 chr7B 89.796 49 1 2 3853 3901 521569938 521569982 8.060000e-05 60.2
9 TraesCS7B01G286200 chr7D 94.836 2750 83 22 4147 6880 492131353 492134059 0.000000e+00 4237.0
10 TraesCS7B01G286200 chr7D 92.861 1667 67 21 376 2023 492128364 492129997 0.000000e+00 2372.0
11 TraesCS7B01G286200 chr7D 93.213 884 42 10 2159 3038 492129996 492130865 0.000000e+00 1284.0
12 TraesCS7B01G286200 chr7D 95.968 496 20 0 3039 3534 418615436 418614941 0.000000e+00 806.0
13 TraesCS7B01G286200 chr7D 96.058 482 19 0 3039 3520 128916140 128915659 0.000000e+00 785.0
14 TraesCS7B01G286200 chr7D 94.466 506 21 4 6879 7378 492134327 492134831 0.000000e+00 773.0
15 TraesCS7B01G286200 chr7D 94.575 424 12 4 3529 3941 492130855 492131278 0.000000e+00 645.0
16 TraesCS7B01G286200 chr7D 93.724 239 2 6 23 261 492128115 492128340 5.530000e-91 346.0
17 TraesCS7B01G286200 chr7D 96.552 87 3 0 3815 3901 492131237 492131323 2.160000e-30 145.0
18 TraesCS7B01G286200 chr7D 93.617 94 2 1 4043 4132 492131275 492131368 3.620000e-28 137.0
19 TraesCS7B01G286200 chr7D 89.796 49 1 2 4043 4087 492131190 492131238 8.060000e-05 60.2
20 TraesCS7B01G286200 chr7A 92.656 2097 82 22 30 2101 558392517 558394566 0.000000e+00 2953.0
21 TraesCS7B01G286200 chr7A 92.356 1910 90 20 4043 5920 558395801 558397686 0.000000e+00 2667.0
22 TraesCS7B01G286200 chr7A 91.418 1608 51 21 5860 7440 558397684 558399231 0.000000e+00 2124.0
23 TraesCS7B01G286200 chr7A 92.238 889 42 12 2159 3038 558394522 558395392 0.000000e+00 1234.0
24 TraesCS7B01G286200 chr7A 94.326 423 14 3 3529 3941 558395382 558395804 2.260000e-179 640.0
25 TraesCS7B01G286200 chr7A 96.591 88 3 0 3815 3902 558395763 558395850 6.020000e-31 147.0
26 TraesCS7B01G286200 chr7A 100.000 42 0 0 3900 3941 558395678 558395719 2.230000e-10 78.7
27 TraesCS7B01G286200 chr7A 91.837 49 0 1 4043 4087 558395716 558395764 1.730000e-06 65.8
28 TraesCS7B01G286200 chr6D 96.957 493 15 0 3039 3531 462416315 462415823 0.000000e+00 828.0
29 TraesCS7B01G286200 chr6D 94.915 118 6 0 3937 4054 14121690 14121573 1.270000e-42 185.0
30 TraesCS7B01G286200 chr1D 95.464 507 21 2 3033 3538 361476889 361477394 0.000000e+00 808.0
31 TraesCS7B01G286200 chr1D 95.833 480 20 0 3039 3518 436854501 436854980 0.000000e+00 776.0
32 TraesCS7B01G286200 chr1D 96.460 113 4 0 2097 2209 5428115 5428003 3.540000e-43 187.0
33 TraesCS7B01G286200 chr1D 92.929 99 7 0 2002 2100 335588896 335588798 2.160000e-30 145.0
34 TraesCS7B01G286200 chr1D 91.919 99 8 0 2002 2100 446428385 446428287 1.010000e-28 139.0
35 TraesCS7B01G286200 chr5B 96.154 494 8 2 3038 3531 490756300 490756782 0.000000e+00 797.0
36 TraesCS7B01G286200 chr5B 98.230 113 2 0 2099 2211 511839680 511839792 1.640000e-46 198.0
37 TraesCS7B01G286200 chr5B 95.690 116 5 0 3939 4054 3865858 3865743 3.540000e-43 187.0
38 TraesCS7B01G286200 chr5B 95.652 115 5 0 2099 2213 252760790 252760676 1.270000e-42 185.0
39 TraesCS7B01G286200 chr2A 94.902 510 15 6 3031 3538 595022984 595023484 0.000000e+00 787.0
40 TraesCS7B01G286200 chr5D 96.042 480 15 1 3041 3520 431192134 431191659 0.000000e+00 778.0
41 TraesCS7B01G286200 chr5D 93.277 119 8 0 2093 2211 491692741 491692859 7.670000e-40 176.0
42 TraesCS7B01G286200 chr1B 98.214 112 2 0 3937 4048 582724247 582724136 5.890000e-46 196.0
43 TraesCS7B01G286200 chr1B 97.345 113 3 0 2100 2212 661509313 661509425 7.620000e-45 193.0
44 TraesCS7B01G286200 chr1B 95.652 115 5 0 2100 2214 651523591 651523705 1.270000e-42 185.0
45 TraesCS7B01G286200 chr1B 95.614 114 5 0 2093 2206 624662912 624663025 4.590000e-42 183.0
46 TraesCS7B01G286200 chr1B 94.444 90 5 0 2011 2100 451736546 451736457 1.010000e-28 139.0
47 TraesCS7B01G286200 chr1B 91.919 99 8 0 2002 2100 610356603 610356505 1.010000e-28 139.0
48 TraesCS7B01G286200 chrUn 97.368 114 3 0 2100 2213 27987519 27987406 2.120000e-45 195.0
49 TraesCS7B01G286200 chrUn 94.262 122 5 2 2093 2212 218382128 218382249 1.270000e-42 185.0
50 TraesCS7B01G286200 chrUn 94.262 122 5 2 2093 2212 218399676 218399797 1.270000e-42 185.0
51 TraesCS7B01G286200 chrUn 95.536 112 5 0 2095 2206 478682134 478682023 5.930000e-41 180.0
52 TraesCS7B01G286200 chr6B 98.182 110 2 0 3937 4046 130967932 130967823 7.620000e-45 193.0
53 TraesCS7B01G286200 chr6B 96.522 115 4 0 3939 4053 633918958 633919072 2.740000e-44 191.0
54 TraesCS7B01G286200 chr6B 94.872 117 6 0 2093 2209 694401181 694401065 4.590000e-42 183.0
55 TraesCS7B01G286200 chr2B 98.182 110 2 0 3939 4048 637574748 637574639 7.620000e-45 193.0
56 TraesCS7B01G286200 chr3D 97.321 112 3 0 3937 4048 490779587 490779698 2.740000e-44 191.0
57 TraesCS7B01G286200 chr3D 95.763 118 5 0 3937 4054 594424618 594424501 2.740000e-44 191.0
58 TraesCS7B01G286200 chr1A 96.522 115 4 0 3939 4053 332892882 332892768 2.740000e-44 191.0
59 TraesCS7B01G286200 chr1A 94.382 89 5 0 2011 2099 565993401 565993489 3.620000e-28 137.0
60 TraesCS7B01G286200 chr3B 95.726 117 2 3 2099 2213 425081018 425080903 1.270000e-42 185.0
61 TraesCS7B01G286200 chr2D 94.444 90 5 0 2011 2100 102942581 102942670 1.010000e-28 139.0
62 TraesCS7B01G286200 chr3A 89.189 111 11 1 1992 2101 485530449 485530559 3.620000e-28 137.0
63 TraesCS7B01G286200 chr3A 87.387 111 13 1 1992 2101 485606927 485607037 7.840000e-25 126.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS7B01G286200 chr7B 521565896 521573336 7440 False 2803.960000 13742 95.918400 1 7441 5 chr7B.!!$F3 7440
1 TraesCS7B01G286200 chr7D 492128115 492134831 6716 False 1111.022222 4237 93.737778 23 7378 9 chr7D.!!$F1 7355
2 TraesCS7B01G286200 chr7A 558392517 558399231 6714 False 1238.687500 2953 93.927750 30 7440 8 chr7A.!!$F1 7410
3 TraesCS7B01G286200 chr1D 361476889 361477394 505 False 808.000000 808 95.464000 3033 3538 1 chr1D.!!$F1 505
4 TraesCS7B01G286200 chr2A 595022984 595023484 500 False 787.000000 787 94.902000 3031 3538 1 chr2A.!!$F1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
241 242 0.179100 CATCATCGTCCGCCACTTCT 60.179 55.000 0.00 0.00 0.00 2.85 F
1225 1243 0.607762 TGCAAAATGGCCGCTGTCTA 60.608 50.000 0.00 0.00 0.00 2.59 F
2115 2146 0.702902 AGGTACTCCCTCCGTTCTGA 59.297 55.000 0.00 0.00 40.71 3.27 F
3955 4006 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30 F
3966 4017 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19 F
3967 4018 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87 F
5041 5116 1.757682 TGACATTGATTAACCGGGCC 58.242 50.000 6.32 0.00 0.00 5.80 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 2208 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19 R
2348 2380 1.264288 GAAGGACACGAAACAAGCCAG 59.736 52.381 0.00 0.00 0.00 4.85 R
4028 4079 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55 R
5521 5600 0.394352 GACCCAAAGACGATGGCCAT 60.394 55.000 20.96 20.96 36.58 4.40 R
5634 5718 4.202080 GGTTGGACCTAAAACTTGAACACC 60.202 45.833 0.00 0.00 34.73 4.16 R
5744 5829 5.160607 ACTGACCATCCGAGAATTTTGTA 57.839 39.130 0.00 0.00 0.00 2.41 R
6820 6995 1.208358 CATGTGTTGGCGACAGCTG 59.792 57.895 13.48 13.48 44.54 4.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.795688 CATCTACCTACCATTGCCCAT 57.204 47.619 0.00 0.00 0.00 4.00
21 22 3.679389 CATCTACCTACCATTGCCCATC 58.321 50.000 0.00 0.00 0.00 3.51
179 180 3.046993 CGTTGAACACGTTTACCGC 57.953 52.632 0.00 0.00 44.49 5.68
180 181 0.715638 CGTTGAACACGTTTACCGCG 60.716 55.000 0.00 0.00 44.49 6.46
181 182 0.301388 GTTGAACACGTTTACCGCGT 59.699 50.000 4.92 0.00 43.90 6.01
183 184 1.126438 GAACACGTTTACCGCGTCG 59.874 57.895 4.92 4.40 40.90 5.12
184 185 1.268113 GAACACGTTTACCGCGTCGA 61.268 55.000 4.92 0.00 40.90 4.20
185 186 0.869454 AACACGTTTACCGCGTCGAA 60.869 50.000 4.92 0.00 40.90 3.71
186 187 0.869454 ACACGTTTACCGCGTCGAAA 60.869 50.000 4.92 0.00 40.90 3.46
187 188 0.447739 CACGTTTACCGCGTCGAAAC 60.448 55.000 4.92 11.14 40.90 2.78
188 189 1.128412 CGTTTACCGCGTCGAAACC 59.872 57.895 17.02 5.32 30.83 3.27
189 190 1.492873 GTTTACCGCGTCGAAACCC 59.507 57.895 4.92 0.00 0.00 4.11
190 191 2.021039 TTTACCGCGTCGAAACCCG 61.021 57.895 4.92 0.00 40.25 5.28
191 192 2.413437 TTTACCGCGTCGAAACCCGA 62.413 55.000 4.92 0.00 46.35 5.14
241 242 0.179100 CATCATCGTCCGCCACTTCT 60.179 55.000 0.00 0.00 0.00 2.85
338 340 2.532715 ACCAGACCAGGGTGGCAT 60.533 61.111 9.65 0.00 42.67 4.40
374 376 5.924825 GCATATTGCATTGGATTCCTTTCTC 59.075 40.000 3.95 0.00 44.26 2.87
429 440 8.091449 TGTAACAAATAGATTTCCCGCAAAAAT 58.909 29.630 0.00 0.00 0.00 1.82
471 482 1.447838 CGTAACCGCACTGCTCCAT 60.448 57.895 0.00 0.00 0.00 3.41
479 490 1.510480 GCACTGCTCCATATTCCGGC 61.510 60.000 0.00 0.00 0.00 6.13
499 510 3.126858 GGCTGTTCAACAATATTCTGCGA 59.873 43.478 0.00 0.00 0.00 5.10
533 544 3.921969 TGCGAAACATTTGCAAACAAG 57.078 38.095 15.41 10.12 37.04 3.16
558 569 5.171476 CCACGAAAGAGAAAGAATAGCAGA 58.829 41.667 0.00 0.00 0.00 4.26
560 571 6.980978 CCACGAAAGAGAAAGAATAGCAGATA 59.019 38.462 0.00 0.00 0.00 1.98
567 578 2.423926 AGAATAGCAGATACACCGCG 57.576 50.000 0.00 0.00 0.00 6.46
611 622 6.400515 GCTGTTTCACAAAATCAACAAACGAA 60.401 34.615 0.00 0.00 0.00 3.85
689 702 2.602676 CCTCTTCCGCTTTCCCCCA 61.603 63.158 0.00 0.00 0.00 4.96
725 738 1.153745 CTTCTTCTCCACGCCTCGG 60.154 63.158 0.00 0.00 0.00 4.63
875 892 3.626924 CCGCTTATAGCCCGGCCT 61.627 66.667 5.55 0.00 38.18 5.19
1225 1243 0.607762 TGCAAAATGGCCGCTGTCTA 60.608 50.000 0.00 0.00 0.00 2.59
1241 1259 1.151450 CTATGGGAATTGGCGCCCT 59.849 57.895 26.77 8.69 44.96 5.19
1245 1263 2.123726 GGAATTGGCGCCCTGGAT 60.124 61.111 26.77 10.01 0.00 3.41
1566 1586 4.943705 GCCAATATCTCCAAGTTCAAGTCA 59.056 41.667 0.00 0.00 0.00 3.41
1590 1610 1.593750 GCAGAGCTCGCAGGTATGG 60.594 63.158 20.64 1.71 35.66 2.74
1690 1721 9.453572 TTCTGTTGAACTTCATCATATAGCTTT 57.546 29.630 0.00 0.00 0.00 3.51
1691 1722 8.886719 TCTGTTGAACTTCATCATATAGCTTTG 58.113 33.333 0.00 0.00 0.00 2.77
1692 1723 8.791327 TGTTGAACTTCATCATATAGCTTTGA 57.209 30.769 0.00 0.00 0.00 2.69
1693 1724 9.399797 TGTTGAACTTCATCATATAGCTTTGAT 57.600 29.630 0.00 0.00 32.87 2.57
1748 1779 8.462016 GTTTCTCACTTGGTTATTCTGCATTAT 58.538 33.333 0.00 0.00 0.00 1.28
1834 1865 8.341903 GTTTTATTTGTGCAAATAGCTTGGTTT 58.658 29.630 14.52 0.00 42.26 3.27
1841 1872 5.345741 GTGCAAATAGCTTGGTTTGTATGTG 59.654 40.000 15.71 0.00 45.94 3.21
1880 1911 9.635520 TCATTAGCTTGTACAAGTTCTACTTAC 57.364 33.333 30.90 14.65 36.03 2.34
1916 1947 5.376625 TGGGTTATCCTGCATTACTTCATC 58.623 41.667 0.00 0.00 36.20 2.92
1956 1987 3.636153 ATTGGAAGAAGTAGCCCTCAC 57.364 47.619 0.00 0.00 0.00 3.51
1998 2029 5.657826 TTGTGCAAATAGTTGGCATGTAT 57.342 34.783 4.91 0.00 35.10 2.29
2037 2068 3.111853 ACTGTCGCTGAAATGAGTGAA 57.888 42.857 0.00 0.00 34.31 3.18
2053 2084 5.912892 TGAGTGAATCTACACACTGAAACA 58.087 37.500 0.00 0.00 45.54 2.83
2090 2121 5.000591 TCATTTCAGCGACAGTTAATTCCA 58.999 37.500 0.00 0.00 0.00 3.53
2098 2129 3.124636 CGACAGTTAATTCCAAACGGAGG 59.875 47.826 0.00 0.00 32.88 4.30
2099 2130 4.070009 GACAGTTAATTCCAAACGGAGGT 58.930 43.478 0.00 0.00 32.88 3.85
2100 2131 5.231702 ACAGTTAATTCCAAACGGAGGTA 57.768 39.130 0.00 0.00 32.88 3.08
2101 2132 4.999311 ACAGTTAATTCCAAACGGAGGTAC 59.001 41.667 0.00 0.00 32.88 3.34
2102 2133 5.221783 ACAGTTAATTCCAAACGGAGGTACT 60.222 40.000 0.00 0.00 34.42 2.73
2114 2145 3.284711 AGGTACTCCCTCCGTTCTG 57.715 57.895 0.00 0.00 40.71 3.02
2115 2146 0.702902 AGGTACTCCCTCCGTTCTGA 59.297 55.000 0.00 0.00 40.71 3.27
2116 2147 1.076677 AGGTACTCCCTCCGTTCTGAA 59.923 52.381 0.00 0.00 40.71 3.02
2117 2148 2.108970 GGTACTCCCTCCGTTCTGAAT 58.891 52.381 0.00 0.00 0.00 2.57
2118 2149 2.500504 GGTACTCCCTCCGTTCTGAATT 59.499 50.000 0.00 0.00 0.00 2.17
2119 2150 3.703052 GGTACTCCCTCCGTTCTGAATTA 59.297 47.826 0.00 0.00 0.00 1.40
2120 2151 3.889520 ACTCCCTCCGTTCTGAATTAC 57.110 47.619 0.00 0.00 0.00 1.89
2121 2152 3.442076 ACTCCCTCCGTTCTGAATTACT 58.558 45.455 0.00 0.00 0.00 2.24
2122 2153 3.838903 ACTCCCTCCGTTCTGAATTACTT 59.161 43.478 0.00 0.00 0.00 2.24
2123 2154 4.184629 CTCCCTCCGTTCTGAATTACTTG 58.815 47.826 0.00 0.00 0.00 3.16
2124 2155 3.581332 TCCCTCCGTTCTGAATTACTTGT 59.419 43.478 0.00 0.00 0.00 3.16
2125 2156 3.933332 CCCTCCGTTCTGAATTACTTGTC 59.067 47.826 0.00 0.00 0.00 3.18
2126 2157 3.612860 CCTCCGTTCTGAATTACTTGTCG 59.387 47.826 0.00 0.00 0.00 4.35
2127 2158 2.991190 TCCGTTCTGAATTACTTGTCGC 59.009 45.455 0.00 0.00 0.00 5.19
2128 2159 2.734606 CCGTTCTGAATTACTTGTCGCA 59.265 45.455 0.00 0.00 0.00 5.10
2129 2160 3.423123 CCGTTCTGAATTACTTGTCGCAC 60.423 47.826 0.00 0.00 0.00 5.34
2130 2161 3.718036 CGTTCTGAATTACTTGTCGCACG 60.718 47.826 0.00 0.00 0.00 5.34
2131 2162 3.021269 TCTGAATTACTTGTCGCACGT 57.979 42.857 0.00 0.00 0.00 4.49
2132 2163 4.163458 TCTGAATTACTTGTCGCACGTA 57.837 40.909 0.00 0.00 0.00 3.57
2133 2164 4.740268 TCTGAATTACTTGTCGCACGTAT 58.260 39.130 0.00 0.00 0.00 3.06
2134 2165 4.561213 TCTGAATTACTTGTCGCACGTATG 59.439 41.667 0.00 0.00 0.00 2.39
2135 2166 3.615056 TGAATTACTTGTCGCACGTATGG 59.385 43.478 0.00 0.00 0.00 2.74
2136 2167 3.513680 ATTACTTGTCGCACGTATGGA 57.486 42.857 0.00 0.00 0.00 3.41
2137 2168 3.513680 TTACTTGTCGCACGTATGGAT 57.486 42.857 0.00 0.00 0.00 3.41
2138 2169 1.640428 ACTTGTCGCACGTATGGATG 58.360 50.000 0.00 0.00 0.00 3.51
2139 2170 1.067142 ACTTGTCGCACGTATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
2140 2171 2.164827 ACTTGTCGCACGTATGGATGTA 59.835 45.455 0.00 0.00 0.00 2.29
2141 2172 3.181479 ACTTGTCGCACGTATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
2142 2173 3.007979 TGTCGCACGTATGGATGTATC 57.992 47.619 0.00 0.00 0.00 2.24
2143 2174 2.621526 TGTCGCACGTATGGATGTATCT 59.378 45.455 0.00 0.00 0.00 1.98
2144 2175 3.816523 TGTCGCACGTATGGATGTATCTA 59.183 43.478 0.00 0.00 0.00 1.98
2145 2176 4.083484 TGTCGCACGTATGGATGTATCTAG 60.083 45.833 0.00 0.00 0.00 2.43
2146 2177 4.153655 GTCGCACGTATGGATGTATCTAGA 59.846 45.833 0.00 0.00 0.00 2.43
2147 2178 4.941873 TCGCACGTATGGATGTATCTAGAT 59.058 41.667 10.73 10.73 0.00 1.98
2148 2179 5.030936 CGCACGTATGGATGTATCTAGATG 58.969 45.833 15.79 0.00 0.00 2.90
2149 2180 5.392057 CGCACGTATGGATGTATCTAGATGT 60.392 44.000 15.79 1.25 30.36 3.06
2150 2181 6.183360 CGCACGTATGGATGTATCTAGATGTA 60.183 42.308 15.79 4.44 29.44 2.29
2151 2182 7.467403 CGCACGTATGGATGTATCTAGATGTAT 60.467 40.741 15.79 9.11 29.44 2.29
2152 2183 8.191446 GCACGTATGGATGTATCTAGATGTATT 58.809 37.037 15.79 0.00 29.44 1.89
2178 2209 8.613060 TTGATTCTAGATACATCCATTTCAGC 57.387 34.615 0.00 0.00 0.00 4.26
2179 2210 6.870439 TGATTCTAGATACATCCATTTCAGCG 59.130 38.462 0.00 0.00 0.00 5.18
2180 2211 6.405278 TTCTAGATACATCCATTTCAGCGA 57.595 37.500 0.00 0.00 0.00 4.93
2181 2212 5.773575 TCTAGATACATCCATTTCAGCGAC 58.226 41.667 0.00 0.00 0.00 5.19
2182 2213 3.384668 AGATACATCCATTTCAGCGACG 58.615 45.455 0.00 0.00 0.00 5.12
2183 2214 2.951457 TACATCCATTTCAGCGACGA 57.049 45.000 0.00 0.00 0.00 4.20
2184 2215 1.645034 ACATCCATTTCAGCGACGAG 58.355 50.000 0.00 0.00 0.00 4.18
2185 2216 1.066858 ACATCCATTTCAGCGACGAGT 60.067 47.619 0.00 0.00 0.00 4.18
2186 2217 2.165641 ACATCCATTTCAGCGACGAGTA 59.834 45.455 0.00 0.00 0.00 2.59
2187 2218 3.186909 CATCCATTTCAGCGACGAGTAA 58.813 45.455 0.00 0.00 0.00 2.24
2188 2219 3.520290 TCCATTTCAGCGACGAGTAAT 57.480 42.857 0.00 0.00 0.00 1.89
2189 2220 3.857052 TCCATTTCAGCGACGAGTAATT 58.143 40.909 0.00 0.00 0.00 1.40
2190 2221 4.250464 TCCATTTCAGCGACGAGTAATTT 58.750 39.130 0.00 0.00 0.00 1.82
2191 2222 4.092821 TCCATTTCAGCGACGAGTAATTTG 59.907 41.667 0.00 0.00 0.00 2.32
2192 2223 4.334443 CATTTCAGCGACGAGTAATTTGG 58.666 43.478 0.00 0.00 0.00 3.28
2193 2224 3.306917 TTCAGCGACGAGTAATTTGGA 57.693 42.857 0.00 0.00 0.00 3.53
2194 2225 3.306917 TCAGCGACGAGTAATTTGGAA 57.693 42.857 0.00 0.00 0.00 3.53
2195 2226 2.991190 TCAGCGACGAGTAATTTGGAAC 59.009 45.455 0.00 0.00 0.00 3.62
2196 2227 1.990563 AGCGACGAGTAATTTGGAACG 59.009 47.619 0.00 0.00 0.00 3.95
2197 2228 1.060122 GCGACGAGTAATTTGGAACGG 59.940 52.381 0.00 0.00 0.00 4.44
2198 2229 2.598589 CGACGAGTAATTTGGAACGGA 58.401 47.619 0.00 0.00 0.00 4.69
2199 2230 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
2200 2231 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
2201 2232 2.277084 CGAGTAATTTGGAACGGAGGG 58.723 52.381 0.00 0.00 0.00 4.30
2202 2233 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
2242 2273 0.821301 TCACCGTTTGCTCCAATGCA 60.821 50.000 0.00 0.00 41.65 3.96
2276 2308 8.150945 TCTGTGCTATTTGATCTTAATAGACCC 58.849 37.037 21.99 13.38 37.64 4.46
2303 2335 3.243068 GGTTACTGTTGTTGGCACTTGAG 60.243 47.826 0.00 0.00 0.00 3.02
2342 2374 4.744570 TGTTGTAGAAGCGTCTAATCTGG 58.255 43.478 11.11 0.00 38.11 3.86
2345 2377 3.384789 TGTAGAAGCGTCTAATCTGGCAT 59.615 43.478 11.11 0.00 38.11 4.40
2348 2380 4.372656 AGAAGCGTCTAATCTGGCATTAC 58.627 43.478 0.00 0.00 29.93 1.89
2515 2551 5.981088 TGGAGCACATGTATTCACAATTT 57.019 34.783 0.00 0.00 38.42 1.82
2516 2552 5.953183 TGGAGCACATGTATTCACAATTTC 58.047 37.500 0.00 0.00 38.42 2.17
2517 2553 5.476254 TGGAGCACATGTATTCACAATTTCA 59.524 36.000 0.00 0.00 38.42 2.69
2518 2554 5.801947 GGAGCACATGTATTCACAATTTCAC 59.198 40.000 0.00 0.00 38.42 3.18
2519 2555 6.330004 AGCACATGTATTCACAATTTCACA 57.670 33.333 0.00 0.00 38.42 3.58
2520 2556 6.151691 AGCACATGTATTCACAATTTCACAC 58.848 36.000 0.00 0.00 38.42 3.82
2550 2586 5.701224 TCCTGTTGTTTCACCTAAAGGATT 58.299 37.500 2.23 0.00 38.94 3.01
2565 2601 9.762381 ACCTAAAGGATTATTTGGTTCACATTA 57.238 29.630 2.23 0.00 38.94 1.90
2769 2809 8.704668 TCTGGAAAGTATGCTGATTAGTGATTA 58.295 33.333 0.00 0.00 0.00 1.75
2795 2835 2.028420 TCCATGGCAATGAACTCTCG 57.972 50.000 6.96 0.00 35.67 4.04
2960 3000 9.297037 TCTTTATCTTTTAGCCAAAGTTTAGCT 57.703 29.630 13.13 13.13 42.47 3.32
2969 3009 5.684704 AGCCAAAGTTTAGCTATCTGCATA 58.315 37.500 6.76 0.00 45.94 3.14
2991 3031 9.219603 GCATATCTGCCATTTAGTACTCAAATA 57.780 33.333 0.00 0.00 42.88 1.40
3147 3187 2.440796 CCCAAGTCGCCATGGCAT 60.441 61.111 34.93 18.29 42.06 4.40
3217 3257 6.482641 AGAGCACATATACAGCAGAGAAAATG 59.517 38.462 0.00 0.00 0.00 2.32
3260 3300 2.946988 ATAGAGCCCACCCTGCGCTA 62.947 60.000 9.73 0.00 43.58 4.26
3343 3383 0.547954 GTCCTCCTCCTTCCCCAGTT 60.548 60.000 0.00 0.00 0.00 3.16
3532 3572 1.457303 CGGCGACTCAAAAACAGAGAG 59.543 52.381 0.00 0.00 36.91 3.20
3533 3573 2.484889 GGCGACTCAAAAACAGAGAGT 58.515 47.619 0.00 0.00 44.71 3.24
3534 3574 3.650139 GGCGACTCAAAAACAGAGAGTA 58.350 45.455 0.00 0.00 42.29 2.59
3538 3578 5.578727 GCGACTCAAAAACAGAGAGTATGAT 59.421 40.000 0.00 0.00 42.29 2.45
3604 3645 1.823797 TAACCAATGTTACGGGGCAC 58.176 50.000 0.00 0.00 35.87 5.01
3694 3735 1.445942 CTCACTCCACGGTGTTGGT 59.554 57.895 7.45 0.08 37.93 3.67
3695 3736 0.677288 CTCACTCCACGGTGTTGGTA 59.323 55.000 7.45 0.00 37.93 3.25
3696 3737 0.390124 TCACTCCACGGTGTTGGTAC 59.610 55.000 7.45 0.00 37.93 3.34
3808 3859 7.011857 TGTGACTTTCAGTTTTGTTTTGCTTTT 59.988 29.630 0.00 0.00 0.00 2.27
3895 3946 7.175104 TGACCAAAAGGCTAACTAAAGATCAT 58.825 34.615 0.00 0.00 0.00 2.45
3937 3988 4.083164 TGCTCAGCATTGTAGAAACATGTG 60.083 41.667 0.00 0.00 31.75 3.21
3938 3989 4.083110 GCTCAGCATTGTAGAAACATGTGT 60.083 41.667 0.00 0.00 34.97 3.72
3939 3990 5.122239 GCTCAGCATTGTAGAAACATGTGTA 59.878 40.000 0.00 0.00 34.97 2.90
3940 3991 6.480524 TCAGCATTGTAGAAACATGTGTAC 57.519 37.500 0.00 2.72 34.97 2.90
3941 3992 6.230472 TCAGCATTGTAGAAACATGTGTACT 58.770 36.000 0.00 1.95 34.97 2.73
3942 3993 6.368791 TCAGCATTGTAGAAACATGTGTACTC 59.631 38.462 0.00 0.00 34.97 2.59
3943 3994 5.643777 AGCATTGTAGAAACATGTGTACTCC 59.356 40.000 0.00 0.00 34.97 3.85
3944 3995 5.163754 GCATTGTAGAAACATGTGTACTCCC 60.164 44.000 0.00 0.00 34.97 4.30
3945 3996 5.818678 TTGTAGAAACATGTGTACTCCCT 57.181 39.130 0.00 0.00 34.97 4.20
3946 3997 5.401531 TGTAGAAACATGTGTACTCCCTC 57.598 43.478 0.00 0.00 0.00 4.30
3947 3998 3.983044 AGAAACATGTGTACTCCCTCC 57.017 47.619 0.00 0.00 0.00 4.30
3948 3999 2.233922 AGAAACATGTGTACTCCCTCCG 59.766 50.000 0.00 0.00 0.00 4.63
3949 4000 1.640917 AACATGTGTACTCCCTCCGT 58.359 50.000 0.00 0.00 0.00 4.69
3950 4001 1.640917 ACATGTGTACTCCCTCCGTT 58.359 50.000 0.00 0.00 0.00 4.44
3951 4002 1.549170 ACATGTGTACTCCCTCCGTTC 59.451 52.381 0.00 0.00 0.00 3.95
3952 4003 0.815734 ATGTGTACTCCCTCCGTTCG 59.184 55.000 0.00 0.00 0.00 3.95
3953 4004 1.246056 TGTGTACTCCCTCCGTTCGG 61.246 60.000 4.74 4.74 0.00 4.30
3954 4005 0.962356 GTGTACTCCCTCCGTTCGGA 60.962 60.000 13.34 13.34 0.00 4.55
3955 4006 0.251297 TGTACTCCCTCCGTTCGGAA 60.251 55.000 14.79 0.04 33.41 4.30
3956 4007 1.109609 GTACTCCCTCCGTTCGGAAT 58.890 55.000 14.79 2.09 33.41 3.01
3957 4008 1.479730 GTACTCCCTCCGTTCGGAATT 59.520 52.381 14.79 0.00 33.41 2.17
3958 4009 1.856629 ACTCCCTCCGTTCGGAATTA 58.143 50.000 14.79 2.82 33.41 1.40
3959 4010 1.479730 ACTCCCTCCGTTCGGAATTAC 59.520 52.381 14.79 0.00 33.41 1.89
3960 4011 1.755380 CTCCCTCCGTTCGGAATTACT 59.245 52.381 14.79 0.00 33.41 2.24
3961 4012 2.167900 CTCCCTCCGTTCGGAATTACTT 59.832 50.000 14.79 0.00 33.41 2.24
3962 4013 2.093869 TCCCTCCGTTCGGAATTACTTG 60.094 50.000 14.79 1.97 33.41 3.16
3963 4014 2.354403 CCCTCCGTTCGGAATTACTTGT 60.354 50.000 14.79 0.00 33.41 3.16
3964 4015 2.928116 CCTCCGTTCGGAATTACTTGTC 59.072 50.000 14.79 0.00 33.41 3.18
3965 4016 2.597305 CTCCGTTCGGAATTACTTGTCG 59.403 50.000 14.79 0.00 33.41 4.35
3966 4017 1.060122 CCGTTCGGAATTACTTGTCGC 59.940 52.381 5.19 0.00 0.00 5.19
3967 4018 1.266211 CGTTCGGAATTACTTGTCGCG 60.266 52.381 0.00 0.00 0.00 5.87
3968 4019 1.987770 GTTCGGAATTACTTGTCGCGA 59.012 47.619 3.71 3.71 0.00 5.87
3969 4020 2.350899 TCGGAATTACTTGTCGCGAA 57.649 45.000 12.06 0.00 0.00 4.70
3970 4021 2.674954 TCGGAATTACTTGTCGCGAAA 58.325 42.857 12.06 0.54 0.00 3.46
3971 4022 3.058450 TCGGAATTACTTGTCGCGAAAA 58.942 40.909 12.06 12.01 0.00 2.29
3972 4023 3.680937 TCGGAATTACTTGTCGCGAAAAT 59.319 39.130 13.05 5.74 0.00 1.82
3973 4024 3.778718 CGGAATTACTTGTCGCGAAAATG 59.221 43.478 13.05 9.32 0.00 2.32
3974 4025 4.095610 GGAATTACTTGTCGCGAAAATGG 58.904 43.478 13.05 4.35 0.00 3.16
3975 4026 4.142773 GGAATTACTTGTCGCGAAAATGGA 60.143 41.667 13.05 0.56 0.00 3.41
3976 4027 5.448632 GGAATTACTTGTCGCGAAAATGGAT 60.449 40.000 13.05 3.91 0.00 3.41
3977 4028 2.900122 ACTTGTCGCGAAAATGGATG 57.100 45.000 13.05 2.76 0.00 3.51
3978 4029 2.151202 ACTTGTCGCGAAAATGGATGT 58.849 42.857 13.05 3.46 0.00 3.06
3979 4030 3.331150 ACTTGTCGCGAAAATGGATGTA 58.669 40.909 13.05 0.00 0.00 2.29
3980 4031 3.938963 ACTTGTCGCGAAAATGGATGTAT 59.061 39.130 13.05 0.00 0.00 2.29
3981 4032 4.034048 ACTTGTCGCGAAAATGGATGTATC 59.966 41.667 13.05 0.00 0.00 2.24
3982 4033 3.792401 TGTCGCGAAAATGGATGTATCT 58.208 40.909 12.06 0.00 0.00 1.98
3983 4034 4.939271 TGTCGCGAAAATGGATGTATCTA 58.061 39.130 12.06 0.00 0.00 1.98
3984 4035 4.982295 TGTCGCGAAAATGGATGTATCTAG 59.018 41.667 12.06 0.00 0.00 2.43
3985 4036 5.220381 GTCGCGAAAATGGATGTATCTAGA 58.780 41.667 12.06 0.00 0.00 2.43
3986 4037 5.864474 GTCGCGAAAATGGATGTATCTAGAT 59.136 40.000 12.06 10.73 0.00 1.98
3987 4038 5.863935 TCGCGAAAATGGATGTATCTAGATG 59.136 40.000 15.79 0.00 0.00 2.90
3988 4039 5.635280 CGCGAAAATGGATGTATCTAGATGT 59.365 40.000 15.79 1.25 0.00 3.06
3989 4040 6.806739 CGCGAAAATGGATGTATCTAGATGTA 59.193 38.462 15.79 4.44 0.00 2.29
3990 4041 7.489435 CGCGAAAATGGATGTATCTAGATGTAT 59.511 37.037 15.79 9.11 0.00 2.29
3991 4042 9.155975 GCGAAAATGGATGTATCTAGATGTATT 57.844 33.333 15.79 4.32 0.00 1.89
4017 4068 9.893634 TTTAGTTCTAAATACATCCATTTCCGA 57.106 29.630 1.47 0.00 30.84 4.55
4018 4069 9.542462 TTAGTTCTAAATACATCCATTTCCGAG 57.458 33.333 0.00 0.00 30.84 4.63
4019 4070 7.792032 AGTTCTAAATACATCCATTTCCGAGA 58.208 34.615 0.00 0.00 30.84 4.04
4020 4071 7.711339 AGTTCTAAATACATCCATTTCCGAGAC 59.289 37.037 0.00 0.00 30.84 3.36
4021 4072 7.119709 TCTAAATACATCCATTTCCGAGACA 57.880 36.000 0.00 0.00 30.84 3.41
4022 4073 7.561251 TCTAAATACATCCATTTCCGAGACAA 58.439 34.615 0.00 0.00 30.84 3.18
4023 4074 6.683974 AAATACATCCATTTCCGAGACAAG 57.316 37.500 0.00 0.00 0.00 3.16
4024 4075 3.703001 ACATCCATTTCCGAGACAAGT 57.297 42.857 0.00 0.00 0.00 3.16
4025 4076 4.819105 ACATCCATTTCCGAGACAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
4026 4077 5.160607 ACATCCATTTCCGAGACAAGTAA 57.839 39.130 0.00 0.00 0.00 2.24
4027 4078 5.745227 ACATCCATTTCCGAGACAAGTAAT 58.255 37.500 0.00 0.00 0.00 1.89
4028 4079 6.180472 ACATCCATTTCCGAGACAAGTAATT 58.820 36.000 0.00 0.00 0.00 1.40
4029 4080 6.316390 ACATCCATTTCCGAGACAAGTAATTC 59.684 38.462 0.00 0.00 0.00 2.17
4030 4081 4.868171 TCCATTTCCGAGACAAGTAATTCG 59.132 41.667 0.00 0.00 0.00 3.34
4150 4205 3.942115 GCAGGTCATAGACTCCTTTTTCC 59.058 47.826 0.00 0.00 32.47 3.13
4153 4208 6.183347 CAGGTCATAGACTCCTTTTTCCATT 58.817 40.000 0.00 0.00 32.47 3.16
4160 4215 6.286240 AGACTCCTTTTTCCATTTATTGGC 57.714 37.500 0.00 0.00 46.01 4.52
4275 4335 1.808411 ACGACTTACTGCCCATGTTG 58.192 50.000 0.00 0.00 0.00 3.33
4567 4629 5.374071 TCTGAACCTTGAAAGAGGGTAAAC 58.626 41.667 0.00 0.00 36.68 2.01
4723 4785 3.824443 TCACTTCTAAGACCGTGTGATGA 59.176 43.478 0.00 0.00 30.78 2.92
4724 4786 4.279922 TCACTTCTAAGACCGTGTGATGAA 59.720 41.667 0.00 0.00 30.78 2.57
4730 4792 3.126001 AGACCGTGTGATGAATGTGTT 57.874 42.857 0.00 0.00 0.00 3.32
4800 4870 8.551205 GTTCTATGCAATTATTGATCACTTCGA 58.449 33.333 9.36 0.00 0.00 3.71
4808 4878 9.986833 CAATTATTGATCACTTCGATGTGTAAA 57.013 29.630 25.38 18.94 38.90 2.01
4813 4883 7.905604 TGATCACTTCGATGTGTAAAAAGAT 57.094 32.000 25.38 13.26 38.90 2.40
4869 4939 4.019591 GGGACCAACCTACAGAGTGTTTAT 60.020 45.833 0.00 0.00 38.98 1.40
4926 5001 6.546772 ACCTTTTACTTTTGGTCGGTTCATAA 59.453 34.615 0.00 0.00 0.00 1.90
4938 5013 5.815740 GGTCGGTTCATAATTTCTCTTAGCA 59.184 40.000 0.00 0.00 0.00 3.49
4958 5033 4.834496 AGCAAAAATTCTCCAATGGTCAGA 59.166 37.500 0.00 0.00 0.00 3.27
4967 5042 3.433343 TCCAATGGTCAGAATGCATGTT 58.567 40.909 0.00 0.00 34.76 2.71
4968 5043 3.444742 TCCAATGGTCAGAATGCATGTTC 59.555 43.478 0.00 0.00 34.76 3.18
5039 5114 4.199310 AGTCATGACATTGATTAACCGGG 58.801 43.478 27.02 0.00 0.00 5.73
5041 5116 1.757682 TGACATTGATTAACCGGGCC 58.242 50.000 6.32 0.00 0.00 5.80
5094 5169 3.418047 CACTACCACCCTTTAACCCTTG 58.582 50.000 0.00 0.00 0.00 3.61
5261 5336 5.116983 CCATTGACCTTTCGAAAATGAAACG 59.883 40.000 17.16 3.25 34.34 3.60
5511 5590 7.765695 AAATTTCTCACTTCTAAGATTGCCA 57.234 32.000 0.00 0.00 0.00 4.92
5512 5591 7.951347 AATTTCTCACTTCTAAGATTGCCAT 57.049 32.000 0.00 0.00 0.00 4.40
5521 5600 9.710900 CACTTCTAAGATTGCCATATGTATACA 57.289 33.333 8.27 8.27 0.00 2.29
5744 5829 3.629398 CGGGCTGCTCATAATTTCTCTTT 59.371 43.478 0.00 0.00 0.00 2.52
5766 5851 4.021102 ACAAAATTCTCGGATGGTCAGT 57.979 40.909 0.00 0.00 0.00 3.41
5930 6078 6.258727 AGCATTAATGAGTTATGACAGAACGG 59.741 38.462 19.73 0.00 31.85 4.44
5991 6145 1.705745 GTTCTTCTTCCCCTTGACCCT 59.294 52.381 0.00 0.00 0.00 4.34
5996 6150 2.358258 TCTTCCCCTTGACCCTCATTT 58.642 47.619 0.00 0.00 0.00 2.32
5997 6151 2.721906 TCTTCCCCTTGACCCTCATTTT 59.278 45.455 0.00 0.00 0.00 1.82
6285 6439 6.000246 TGGCATCACCACTTTATCATAGAA 58.000 37.500 0.00 0.00 46.36 2.10
6447 6601 0.999406 CATCGTGATGTGAACCCGAC 59.001 55.000 1.62 0.00 34.23 4.79
6448 6602 0.457853 ATCGTGATGTGAACCCGACG 60.458 55.000 0.00 0.00 0.00 5.12
6569 6723 5.428253 GGGAATGCTGTAACATCTGTTAGA 58.572 41.667 3.08 1.82 40.74 2.10
6691 6845 3.620488 CTTAACTAGCATGCTTCCCCAA 58.380 45.455 28.02 12.61 0.00 4.12
6769 6923 3.914426 TCCTAGCAATGAAGGAAGACC 57.086 47.619 2.75 0.00 38.97 3.85
6784 6938 6.943899 AGGAAGACCTGATATTTCCCTATC 57.056 41.667 0.00 0.00 45.92 2.08
6820 6995 3.304996 GCTGCTGTTTTCCTTCTCCTTTC 60.305 47.826 0.00 0.00 0.00 2.62
6873 7048 0.392461 GTTACAGGGATGCTTGGCGA 60.392 55.000 0.56 0.00 0.00 5.54
6885 7329 4.137116 TGCTTGGCGACATATAAACTCT 57.863 40.909 0.00 0.00 42.32 3.24
6895 7339 6.746364 GCGACATATAAACTCTATTCCCTACG 59.254 42.308 0.00 0.00 0.00 3.51
6906 7350 2.450609 TTCCCTACGCTTCTGTTGTC 57.549 50.000 0.00 0.00 0.00 3.18
6910 7354 1.602165 CCTACGCTTCTGTTGTCGTGT 60.602 52.381 0.00 0.00 36.50 4.49
6916 7360 3.120792 GCTTCTGTTGTCGTGTTCTACA 58.879 45.455 0.00 0.00 0.00 2.74
6921 7365 7.576750 TTCTGTTGTCGTGTTCTACAATATC 57.423 36.000 0.00 0.00 37.87 1.63
6965 7413 5.347342 TCTGTGTTTTAGTGGCATGTTTTG 58.653 37.500 0.00 0.00 0.00 2.44
7064 7513 3.031013 CCCAACTCCCAAGTTTTGTCTT 58.969 45.455 0.00 0.00 43.28 3.01
7071 7520 2.166254 CCCAAGTTTTGTCTTGCTGTGT 59.834 45.455 0.00 0.00 42.16 3.72
7146 7599 4.946157 GCTGCCCATAATAGCATAATCTGT 59.054 41.667 0.00 0.00 38.56 3.41
7317 7771 1.663739 GGTTGAAACCGAAAGCCCC 59.336 57.895 0.00 0.00 39.66 5.80
7318 7772 1.284715 GTTGAAACCGAAAGCCCCG 59.715 57.895 0.00 0.00 0.00 5.73
7440 7897 2.750166 TCTGTTCTCTGAGACATCCGTC 59.250 50.000 6.92 0.00 42.95 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 1.270839 CCGATGGGCAATGGTAGGTAG 60.271 57.143 0.00 0.00 0.00 3.18
4 5 0.762418 CCGATGGGCAATGGTAGGTA 59.238 55.000 0.00 0.00 0.00 3.08
5 6 1.531748 CCGATGGGCAATGGTAGGT 59.468 57.895 0.00 0.00 0.00 3.08
6 7 1.228245 CCCGATGGGCAATGGTAGG 60.228 63.158 0.00 0.00 35.35 3.18
7 8 4.481195 CCCGATGGGCAATGGTAG 57.519 61.111 0.00 0.00 35.35 3.18
178 179 2.108344 TTTTGCTCGGGTTTCGACGC 62.108 55.000 0.00 0.00 43.74 5.19
179 180 0.515564 ATTTTGCTCGGGTTTCGACG 59.484 50.000 0.00 0.00 43.74 5.12
180 181 1.135774 GGATTTTGCTCGGGTTTCGAC 60.136 52.381 0.00 0.00 43.74 4.20
181 182 1.161843 GGATTTTGCTCGGGTTTCGA 58.838 50.000 0.00 0.00 46.77 3.71
183 184 3.592898 ATTGGATTTTGCTCGGGTTTC 57.407 42.857 0.00 0.00 0.00 2.78
184 185 5.395214 GGATTATTGGATTTTGCTCGGGTTT 60.395 40.000 0.00 0.00 0.00 3.27
185 186 4.099419 GGATTATTGGATTTTGCTCGGGTT 59.901 41.667 0.00 0.00 0.00 4.11
186 187 3.636764 GGATTATTGGATTTTGCTCGGGT 59.363 43.478 0.00 0.00 0.00 5.28
187 188 3.636300 TGGATTATTGGATTTTGCTCGGG 59.364 43.478 0.00 0.00 0.00 5.14
188 189 4.916983 TGGATTATTGGATTTTGCTCGG 57.083 40.909 0.00 0.00 0.00 4.63
189 190 5.916883 GTGATGGATTATTGGATTTTGCTCG 59.083 40.000 0.00 0.00 0.00 5.03
190 191 6.218746 GGTGATGGATTATTGGATTTTGCTC 58.781 40.000 0.00 0.00 0.00 4.26
191 192 5.221303 CGGTGATGGATTATTGGATTTTGCT 60.221 40.000 0.00 0.00 0.00 3.91
192 193 4.984161 CGGTGATGGATTATTGGATTTTGC 59.016 41.667 0.00 0.00 0.00 3.68
193 194 6.147864 ACGGTGATGGATTATTGGATTTTG 57.852 37.500 0.00 0.00 0.00 2.44
194 195 5.890985 TGACGGTGATGGATTATTGGATTTT 59.109 36.000 0.00 0.00 0.00 1.82
380 382 1.437625 TGCAATCGAATGAAGTCGCA 58.562 45.000 4.22 0.00 40.88 5.10
381 383 2.744787 ATGCAATCGAATGAAGTCGC 57.255 45.000 4.22 0.00 40.88 5.19
382 384 4.853196 ACAAAATGCAATCGAATGAAGTCG 59.147 37.500 4.22 0.00 42.48 4.18
383 385 7.325821 TGTTACAAAATGCAATCGAATGAAGTC 59.674 33.333 4.22 0.00 0.00 3.01
468 479 2.364632 TGTTGAACAGCCGGAATATGG 58.635 47.619 5.05 0.00 0.00 2.74
471 482 6.038161 CAGAATATTGTTGAACAGCCGGAATA 59.962 38.462 5.05 0.00 0.00 1.75
479 490 5.082059 GTGTCGCAGAATATTGTTGAACAG 58.918 41.667 0.00 0.00 39.69 3.16
499 510 0.956633 TTCGCAAGTCCTAGACGTGT 59.043 50.000 11.37 0.00 42.33 4.49
533 544 3.064134 GCTATTCTTTCTCTTTCGTGGGC 59.936 47.826 0.00 0.00 0.00 5.36
567 578 1.883084 CCTCGGTTCTACGCATGGC 60.883 63.158 0.00 0.00 0.00 4.40
611 622 2.028876 CTTCGTGTTTGTTCCCCCTTT 58.971 47.619 0.00 0.00 0.00 3.11
641 653 4.953579 TGTTTGGGAAGAAAACTAGCAACT 59.046 37.500 0.00 0.00 38.17 3.16
689 702 2.683933 AAGACGCCGAGGACCCAT 60.684 61.111 0.00 0.00 0.00 4.00
725 738 1.406860 GGAGGAGGTCAGGAGGATGC 61.407 65.000 0.00 0.00 0.00 3.91
734 747 4.779733 GGGAGGCGGAGGAGGTCA 62.780 72.222 0.00 0.00 0.00 4.02
929 946 4.824515 AGGAGGCGGACGAGGAGG 62.825 72.222 0.00 0.00 0.00 4.30
1225 1243 2.442643 CAGGGCGCCAATTCCCAT 60.443 61.111 30.85 0.00 45.07 4.00
1241 1259 1.358877 CATTTCGTCGAGCACATCCA 58.641 50.000 0.00 0.00 0.00 3.41
1245 1263 1.136000 CATTGCATTTCGTCGAGCACA 60.136 47.619 7.11 1.12 36.62 4.57
1286 1305 2.774951 GCGAACGACACGATCACCG 61.775 63.158 0.00 0.00 45.44 4.94
1295 1314 1.740332 TTCCTCACCTGCGAACGACA 61.740 55.000 0.00 0.00 0.00 4.35
1566 1586 1.667191 CTGCGAGCTCTGCACTTGT 60.667 57.895 23.20 0.00 37.44 3.16
1590 1610 4.333372 TCGAACTAACAGTTTGGTTCCAAC 59.667 41.667 18.26 0.77 45.73 3.77
1692 1723 9.495572 GGCAAGTAGAAATTGTAGAAGCTATAT 57.504 33.333 0.00 0.00 0.00 0.86
1693 1724 8.482943 TGGCAAGTAGAAATTGTAGAAGCTATA 58.517 33.333 0.00 0.00 0.00 1.31
1694 1725 7.338710 TGGCAAGTAGAAATTGTAGAAGCTAT 58.661 34.615 0.00 0.00 0.00 2.97
1695 1726 6.707290 TGGCAAGTAGAAATTGTAGAAGCTA 58.293 36.000 0.00 0.00 0.00 3.32
1696 1727 5.560724 TGGCAAGTAGAAATTGTAGAAGCT 58.439 37.500 0.00 0.00 0.00 3.74
1697 1728 5.880054 TGGCAAGTAGAAATTGTAGAAGC 57.120 39.130 0.00 0.00 0.00 3.86
1698 1729 7.820648 ACAATGGCAAGTAGAAATTGTAGAAG 58.179 34.615 0.00 0.00 39.13 2.85
1699 1730 7.759489 ACAATGGCAAGTAGAAATTGTAGAA 57.241 32.000 0.00 0.00 39.13 2.10
1700 1731 7.759489 AACAATGGCAAGTAGAAATTGTAGA 57.241 32.000 0.00 0.00 39.80 2.59
1748 1779 5.128499 ACCAACAGACAATCACAAAATGGAA 59.872 36.000 0.00 0.00 0.00 3.53
1813 1844 5.367302 ACAAACCAAGCTATTTGCACAAAT 58.633 33.333 12.82 12.82 45.94 2.32
1834 1865 9.987272 CTAATGATGAAGTCCTAATCACATACA 57.013 33.333 0.00 0.00 33.37 2.29
1841 1872 8.983724 GTACAAGCTAATGATGAAGTCCTAATC 58.016 37.037 0.00 0.00 0.00 1.75
1880 1911 4.164988 AGGATAACCCAGAGAGAACAATGG 59.835 45.833 0.00 0.00 37.41 3.16
1916 1947 6.315144 TCCAATTACCAACATACAATCACGAG 59.685 38.462 0.00 0.00 0.00 4.18
1956 1987 6.256321 GCACAAACCAATCATTATAAGCCAAG 59.744 38.462 0.00 0.00 0.00 3.61
1968 1999 5.295950 CCAACTATTTGCACAAACCAATCA 58.704 37.500 0.00 0.00 32.51 2.57
2037 2068 4.585955 AGACGTGTTTCAGTGTGTAGAT 57.414 40.909 0.00 0.00 0.00 1.98
2053 2084 5.583495 GCTGAAATGAGTGTATCTAGACGT 58.417 41.667 0.00 0.00 0.00 4.34
2098 2129 3.889520 AATTCAGAACGGAGGGAGTAC 57.110 47.619 0.00 0.00 0.00 2.73
2099 2130 4.607239 AGTAATTCAGAACGGAGGGAGTA 58.393 43.478 0.00 0.00 0.00 2.59
2100 2131 3.442076 AGTAATTCAGAACGGAGGGAGT 58.558 45.455 0.00 0.00 0.00 3.85
2101 2132 4.184629 CAAGTAATTCAGAACGGAGGGAG 58.815 47.826 0.00 0.00 0.00 4.30
2102 2133 3.581332 ACAAGTAATTCAGAACGGAGGGA 59.419 43.478 0.00 0.00 0.00 4.20
2103 2134 3.933332 GACAAGTAATTCAGAACGGAGGG 59.067 47.826 0.00 0.00 0.00 4.30
2104 2135 3.612860 CGACAAGTAATTCAGAACGGAGG 59.387 47.826 0.00 0.00 0.00 4.30
2105 2136 3.060895 GCGACAAGTAATTCAGAACGGAG 59.939 47.826 0.00 0.00 0.00 4.63
2106 2137 2.991190 GCGACAAGTAATTCAGAACGGA 59.009 45.455 0.00 0.00 0.00 4.69
2107 2138 2.734606 TGCGACAAGTAATTCAGAACGG 59.265 45.455 0.00 0.00 0.00 4.44
2108 2139 3.718036 CGTGCGACAAGTAATTCAGAACG 60.718 47.826 0.00 0.00 0.00 3.95
2109 2140 3.183775 ACGTGCGACAAGTAATTCAGAAC 59.816 43.478 0.00 0.00 0.00 3.01
2110 2141 3.386486 ACGTGCGACAAGTAATTCAGAA 58.614 40.909 0.00 0.00 0.00 3.02
2111 2142 3.021269 ACGTGCGACAAGTAATTCAGA 57.979 42.857 0.00 0.00 0.00 3.27
2112 2143 4.259810 CCATACGTGCGACAAGTAATTCAG 60.260 45.833 0.00 0.88 32.82 3.02
2113 2144 3.615056 CCATACGTGCGACAAGTAATTCA 59.385 43.478 0.00 0.00 32.82 2.57
2114 2145 3.861113 TCCATACGTGCGACAAGTAATTC 59.139 43.478 0.00 0.00 32.82 2.17
2115 2146 3.852286 TCCATACGTGCGACAAGTAATT 58.148 40.909 0.00 0.00 32.82 1.40
2116 2147 3.513680 TCCATACGTGCGACAAGTAAT 57.486 42.857 0.00 0.00 32.82 1.89
2117 2148 3.183754 CATCCATACGTGCGACAAGTAA 58.816 45.455 0.00 0.00 32.82 2.24
2118 2149 2.164827 ACATCCATACGTGCGACAAGTA 59.835 45.455 0.00 7.72 33.49 2.24
2119 2150 1.067142 ACATCCATACGTGCGACAAGT 60.067 47.619 0.00 0.00 0.00 3.16
2120 2151 1.640428 ACATCCATACGTGCGACAAG 58.360 50.000 0.00 0.00 0.00 3.16
2121 2152 2.943449 TACATCCATACGTGCGACAA 57.057 45.000 0.00 0.00 0.00 3.18
2122 2153 2.621526 AGATACATCCATACGTGCGACA 59.378 45.455 0.00 0.00 0.00 4.35
2123 2154 3.284323 AGATACATCCATACGTGCGAC 57.716 47.619 0.00 0.00 0.00 5.19
2124 2155 4.320870 TCTAGATACATCCATACGTGCGA 58.679 43.478 0.00 0.00 0.00 5.10
2125 2156 4.680171 TCTAGATACATCCATACGTGCG 57.320 45.455 0.00 0.00 0.00 5.34
2126 2157 5.955488 ACATCTAGATACATCCATACGTGC 58.045 41.667 4.54 0.00 0.00 5.34
2152 2183 9.060347 GCTGAAATGGATGTATCTAGAATCAAA 57.940 33.333 0.00 0.00 0.00 2.69
2153 2184 7.386025 CGCTGAAATGGATGTATCTAGAATCAA 59.614 37.037 0.00 0.00 0.00 2.57
2154 2185 6.870439 CGCTGAAATGGATGTATCTAGAATCA 59.130 38.462 0.00 0.00 0.00 2.57
2155 2186 7.062839 GTCGCTGAAATGGATGTATCTAGAATC 59.937 40.741 0.00 0.00 0.00 2.52
2156 2187 6.870965 GTCGCTGAAATGGATGTATCTAGAAT 59.129 38.462 0.00 0.00 0.00 2.40
2157 2188 6.216569 GTCGCTGAAATGGATGTATCTAGAA 58.783 40.000 0.00 0.00 0.00 2.10
2158 2189 5.562890 CGTCGCTGAAATGGATGTATCTAGA 60.563 44.000 0.00 0.00 0.00 2.43
2159 2190 4.618912 CGTCGCTGAAATGGATGTATCTAG 59.381 45.833 0.00 0.00 0.00 2.43
2160 2191 4.277423 TCGTCGCTGAAATGGATGTATCTA 59.723 41.667 0.00 0.00 0.00 1.98
2161 2192 3.068165 TCGTCGCTGAAATGGATGTATCT 59.932 43.478 0.00 0.00 0.00 1.98
2162 2193 3.381045 TCGTCGCTGAAATGGATGTATC 58.619 45.455 0.00 0.00 0.00 2.24
2163 2194 3.181475 ACTCGTCGCTGAAATGGATGTAT 60.181 43.478 0.00 0.00 0.00 2.29
2164 2195 2.165641 ACTCGTCGCTGAAATGGATGTA 59.834 45.455 0.00 0.00 0.00 2.29
2165 2196 1.066858 ACTCGTCGCTGAAATGGATGT 60.067 47.619 0.00 0.00 0.00 3.06
2166 2197 1.645034 ACTCGTCGCTGAAATGGATG 58.355 50.000 0.00 0.00 0.00 3.51
2167 2198 3.520290 TTACTCGTCGCTGAAATGGAT 57.480 42.857 0.00 0.00 0.00 3.41
2168 2199 3.520290 ATTACTCGTCGCTGAAATGGA 57.480 42.857 0.00 0.00 0.00 3.41
2169 2200 4.334443 CAAATTACTCGTCGCTGAAATGG 58.666 43.478 0.00 0.00 0.00 3.16
2170 2201 4.092821 TCCAAATTACTCGTCGCTGAAATG 59.907 41.667 0.00 0.00 0.00 2.32
2171 2202 4.250464 TCCAAATTACTCGTCGCTGAAAT 58.750 39.130 0.00 0.00 0.00 2.17
2172 2203 3.655486 TCCAAATTACTCGTCGCTGAAA 58.345 40.909 0.00 0.00 0.00 2.69
2173 2204 3.306917 TCCAAATTACTCGTCGCTGAA 57.693 42.857 0.00 0.00 0.00 3.02
2174 2205 2.991190 GTTCCAAATTACTCGTCGCTGA 59.009 45.455 0.00 0.00 0.00 4.26
2175 2206 2.222508 CGTTCCAAATTACTCGTCGCTG 60.223 50.000 0.00 0.00 0.00 5.18
2176 2207 1.990563 CGTTCCAAATTACTCGTCGCT 59.009 47.619 0.00 0.00 0.00 4.93
2177 2208 1.060122 CCGTTCCAAATTACTCGTCGC 59.940 52.381 0.00 0.00 0.00 5.19
2178 2209 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
2179 2210 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
2180 2211 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
2181 2212 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
2182 2213 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
2183 2214 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2184 2215 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2185 2216 4.098894 ACTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
2186 2217 2.910977 ACTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
2187 2218 2.547990 ACTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
2188 2219 2.019807 ACTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2189 2220 2.905415 TACTACTCCCTCCGTTCCAA 57.095 50.000 0.00 0.00 0.00 3.53
2190 2221 2.905415 TTACTACTCCCTCCGTTCCA 57.095 50.000 0.00 0.00 0.00 3.53
2191 2222 4.280425 CCTAATTACTACTCCCTCCGTTCC 59.720 50.000 0.00 0.00 0.00 3.62
2192 2223 4.280425 CCCTAATTACTACTCCCTCCGTTC 59.720 50.000 0.00 0.00 0.00 3.95
2193 2224 4.221530 CCCTAATTACTACTCCCTCCGTT 58.778 47.826 0.00 0.00 0.00 4.44
2194 2225 3.437637 CCCCTAATTACTACTCCCTCCGT 60.438 52.174 0.00 0.00 0.00 4.69
2195 2226 3.163467 CCCCTAATTACTACTCCCTCCG 58.837 54.545 0.00 0.00 0.00 4.63
2196 2227 4.210611 ACCCCTAATTACTACTCCCTCC 57.789 50.000 0.00 0.00 0.00 4.30
2197 2228 4.347292 CCAACCCCTAATTACTACTCCCTC 59.653 50.000 0.00 0.00 0.00 4.30
2198 2229 4.304659 CCAACCCCTAATTACTACTCCCT 58.695 47.826 0.00 0.00 0.00 4.20
2199 2230 3.393609 CCCAACCCCTAATTACTACTCCC 59.606 52.174 0.00 0.00 0.00 4.30
2200 2231 3.393609 CCCCAACCCCTAATTACTACTCC 59.606 52.174 0.00 0.00 0.00 3.85
2201 2232 4.042884 ACCCCAACCCCTAATTACTACTC 58.957 47.826 0.00 0.00 0.00 2.59
2202 2233 4.042884 GACCCCAACCCCTAATTACTACT 58.957 47.826 0.00 0.00 0.00 2.57
2242 2273 7.876936 AGATCAAATAGCACAGAATGATTGT 57.123 32.000 0.00 0.00 39.69 2.71
2276 2308 4.518970 AGTGCCAACAACAGTAACCTAATG 59.481 41.667 0.00 0.00 0.00 1.90
2319 2351 5.168569 CCAGATTAGACGCTTCTACAACAA 58.831 41.667 0.00 0.00 33.81 2.83
2342 2374 2.031157 ACACGAAACAAGCCAGTAATGC 60.031 45.455 0.00 0.00 0.00 3.56
2345 2377 2.158871 AGGACACGAAACAAGCCAGTAA 60.159 45.455 0.00 0.00 0.00 2.24
2348 2380 1.264288 GAAGGACACGAAACAAGCCAG 59.736 52.381 0.00 0.00 0.00 4.85
2405 2441 8.807948 AAACAAATTATGGCAGACTATGTAGT 57.192 30.769 0.00 0.00 39.71 2.73
2512 2548 3.895232 ACAGGATAGAGCGTGTGAAAT 57.105 42.857 0.00 0.00 35.75 2.17
2513 2549 3.244078 ACAACAGGATAGAGCGTGTGAAA 60.244 43.478 0.00 0.00 37.02 2.69
2514 2550 2.299013 ACAACAGGATAGAGCGTGTGAA 59.701 45.455 0.00 0.00 37.02 3.18
2515 2551 1.893137 ACAACAGGATAGAGCGTGTGA 59.107 47.619 0.00 0.00 37.02 3.58
2516 2552 2.370281 ACAACAGGATAGAGCGTGTG 57.630 50.000 0.00 0.00 37.02 3.82
2517 2553 3.244078 TGAAACAACAGGATAGAGCGTGT 60.244 43.478 0.00 0.00 38.40 4.49
2518 2554 3.123621 GTGAAACAACAGGATAGAGCGTG 59.876 47.826 0.00 0.00 36.32 5.34
2519 2555 3.326747 GTGAAACAACAGGATAGAGCGT 58.673 45.455 0.00 0.00 36.32 5.07
2520 2556 2.673368 GGTGAAACAACAGGATAGAGCG 59.327 50.000 0.00 0.00 39.98 5.03
2588 2626 3.756933 AGCATTTGCAGGTTCAAACAT 57.243 38.095 5.20 0.00 45.16 2.71
2769 2809 5.954150 AGAGTTCATTGCCATGGAAATACTT 59.046 36.000 18.17 7.27 0.00 2.24
2960 3000 8.138928 AGTACTAAATGGCAGATATGCAGATA 57.861 34.615 15.27 0.85 36.33 1.98
2962 3002 6.041979 TGAGTACTAAATGGCAGATATGCAGA 59.958 38.462 15.27 0.00 36.33 4.26
3005 3045 9.657121 CTTTCAAGAATCAAGAACACTAAAGAC 57.343 33.333 0.00 0.00 0.00 3.01
3147 3187 4.202060 GCTCTGCTGCTCTATGTACTGTTA 60.202 45.833 0.00 0.00 0.00 2.41
3217 3257 5.250235 TGTGCTCTGCTTAGATGTAGTAC 57.750 43.478 0.00 0.00 0.00 2.73
3343 3383 6.631088 GCTGCTATATATGTCATCATGTGGGA 60.631 42.308 0.00 0.00 35.70 4.37
3538 3578 9.585369 TGCCATGGAAATATTAATCACTAATCA 57.415 29.630 18.40 0.00 32.28 2.57
3604 3645 3.320541 AGTTCAGTGGAGAGTCTCAGTTG 59.679 47.826 21.53 14.69 31.08 3.16
3694 3735 7.608153 TCCTTTCAAATCTACTGATCAACGTA 58.392 34.615 0.00 0.00 31.51 3.57
3695 3736 6.464222 TCCTTTCAAATCTACTGATCAACGT 58.536 36.000 0.00 0.00 31.51 3.99
3696 3737 6.968131 TCCTTTCAAATCTACTGATCAACG 57.032 37.500 0.00 0.00 31.51 4.10
3753 3796 6.204688 CAGTAACATCCAGACAGCACTTTTAA 59.795 38.462 0.00 0.00 0.00 1.52
3895 3946 2.768698 CATTTCCATTGCAAGCACCAA 58.231 42.857 4.94 0.00 0.00 3.67
3937 3988 1.109609 ATTCCGAACGGAGGGAGTAC 58.890 55.000 15.34 0.00 46.06 2.73
3938 3989 1.856629 AATTCCGAACGGAGGGAGTA 58.143 50.000 15.34 1.05 46.06 2.59
3939 3990 1.479730 GTAATTCCGAACGGAGGGAGT 59.520 52.381 15.34 4.12 46.06 3.85
3940 3991 1.755380 AGTAATTCCGAACGGAGGGAG 59.245 52.381 15.34 0.00 46.06 4.30
3941 3992 1.856629 AGTAATTCCGAACGGAGGGA 58.143 50.000 15.34 2.49 46.06 4.20
3942 3993 2.277084 CAAGTAATTCCGAACGGAGGG 58.723 52.381 15.34 0.00 46.06 4.30
3943 3994 2.928116 GACAAGTAATTCCGAACGGAGG 59.072 50.000 15.34 4.52 46.06 4.30
3944 3995 2.597305 CGACAAGTAATTCCGAACGGAG 59.403 50.000 15.34 5.60 46.06 4.63
3945 3996 2.598589 CGACAAGTAATTCCGAACGGA 58.401 47.619 12.04 12.04 43.52 4.69
3946 3997 1.060122 GCGACAAGTAATTCCGAACGG 59.940 52.381 6.94 6.94 0.00 4.44
3947 3998 1.266211 CGCGACAAGTAATTCCGAACG 60.266 52.381 0.00 0.00 0.00 3.95
3948 3999 1.987770 TCGCGACAAGTAATTCCGAAC 59.012 47.619 3.71 0.00 0.00 3.95
3949 4000 2.350899 TCGCGACAAGTAATTCCGAA 57.649 45.000 3.71 0.00 0.00 4.30
3950 4001 2.350899 TTCGCGACAAGTAATTCCGA 57.649 45.000 9.15 0.00 0.00 4.55
3951 4002 3.443054 TTTTCGCGACAAGTAATTCCG 57.557 42.857 9.15 0.00 0.00 4.30
3952 4003 4.095610 CCATTTTCGCGACAAGTAATTCC 58.904 43.478 9.15 0.00 0.00 3.01
3953 4004 4.965062 TCCATTTTCGCGACAAGTAATTC 58.035 39.130 9.15 0.00 0.00 2.17
3954 4005 5.106317 ACATCCATTTTCGCGACAAGTAATT 60.106 36.000 9.15 0.00 0.00 1.40
3955 4006 4.394920 ACATCCATTTTCGCGACAAGTAAT 59.605 37.500 9.15 0.42 0.00 1.89
3956 4007 3.749088 ACATCCATTTTCGCGACAAGTAA 59.251 39.130 9.15 0.00 0.00 2.24
3957 4008 3.331150 ACATCCATTTTCGCGACAAGTA 58.669 40.909 9.15 0.00 0.00 2.24
3958 4009 2.151202 ACATCCATTTTCGCGACAAGT 58.849 42.857 9.15 0.00 0.00 3.16
3959 4010 2.900122 ACATCCATTTTCGCGACAAG 57.100 45.000 9.15 2.84 0.00 3.16
3960 4011 4.188462 AGATACATCCATTTTCGCGACAA 58.812 39.130 9.15 9.93 0.00 3.18
3961 4012 3.792401 AGATACATCCATTTTCGCGACA 58.208 40.909 9.15 0.00 0.00 4.35
3962 4013 5.220381 TCTAGATACATCCATTTTCGCGAC 58.780 41.667 9.15 0.00 0.00 5.19
3963 4014 5.447624 TCTAGATACATCCATTTTCGCGA 57.552 39.130 3.71 3.71 0.00 5.87
3964 4015 5.635280 ACATCTAGATACATCCATTTTCGCG 59.365 40.000 4.54 0.00 0.00 5.87
3965 4016 8.709386 ATACATCTAGATACATCCATTTTCGC 57.291 34.615 4.54 0.00 0.00 4.70
3991 4042 9.893634 TCGGAAATGGATGTATTTAGAACTAAA 57.106 29.630 9.03 9.03 39.12 1.85
3992 4043 9.542462 CTCGGAAATGGATGTATTTAGAACTAA 57.458 33.333 0.00 0.00 30.78 2.24
3993 4044 8.920174 TCTCGGAAATGGATGTATTTAGAACTA 58.080 33.333 0.00 0.00 30.78 2.24
3994 4045 7.711339 GTCTCGGAAATGGATGTATTTAGAACT 59.289 37.037 0.00 0.00 30.78 3.01
3995 4046 7.494625 TGTCTCGGAAATGGATGTATTTAGAAC 59.505 37.037 0.00 0.00 30.78 3.01
3996 4047 7.561251 TGTCTCGGAAATGGATGTATTTAGAA 58.439 34.615 0.00 0.00 30.78 2.10
3997 4048 7.119709 TGTCTCGGAAATGGATGTATTTAGA 57.880 36.000 0.00 0.00 30.78 2.10
3998 4049 7.495934 ACTTGTCTCGGAAATGGATGTATTTAG 59.504 37.037 0.00 0.00 30.78 1.85
3999 4050 7.335627 ACTTGTCTCGGAAATGGATGTATTTA 58.664 34.615 0.00 0.00 30.78 1.40
4000 4051 6.180472 ACTTGTCTCGGAAATGGATGTATTT 58.820 36.000 0.00 0.00 33.19 1.40
4001 4052 5.745227 ACTTGTCTCGGAAATGGATGTATT 58.255 37.500 0.00 0.00 0.00 1.89
4002 4053 5.359194 ACTTGTCTCGGAAATGGATGTAT 57.641 39.130 0.00 0.00 0.00 2.29
4003 4054 4.819105 ACTTGTCTCGGAAATGGATGTA 57.181 40.909 0.00 0.00 0.00 2.29
4004 4055 3.703001 ACTTGTCTCGGAAATGGATGT 57.297 42.857 0.00 0.00 0.00 3.06
4005 4056 6.510157 CGAATTACTTGTCTCGGAAATGGATG 60.510 42.308 0.00 0.00 0.00 3.51
4006 4057 5.523916 CGAATTACTTGTCTCGGAAATGGAT 59.476 40.000 0.00 0.00 0.00 3.41
4007 4058 4.868171 CGAATTACTTGTCTCGGAAATGGA 59.132 41.667 0.00 0.00 0.00 3.41
4008 4059 5.143916 CGAATTACTTGTCTCGGAAATGG 57.856 43.478 0.00 0.00 0.00 3.16
4015 4066 2.597305 CCGTTCCGAATTACTTGTCTCG 59.403 50.000 0.00 0.00 0.00 4.04
4016 4067 3.841643 TCCGTTCCGAATTACTTGTCTC 58.158 45.455 0.00 0.00 0.00 3.36
4017 4068 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
4018 4069 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
4019 4070 2.354403 CCCTCCGTTCCGAATTACTTGT 60.354 50.000 0.00 0.00 0.00 3.16
4020 4071 2.093869 TCCCTCCGTTCCGAATTACTTG 60.094 50.000 0.00 0.00 0.00 3.16
4021 4072 2.167900 CTCCCTCCGTTCCGAATTACTT 59.832 50.000 0.00 0.00 0.00 2.24
4022 4073 1.755380 CTCCCTCCGTTCCGAATTACT 59.245 52.381 0.00 0.00 0.00 2.24
4023 4074 1.479730 ACTCCCTCCGTTCCGAATTAC 59.520 52.381 0.00 0.00 0.00 1.89
4024 4075 1.856629 ACTCCCTCCGTTCCGAATTA 58.143 50.000 0.00 0.00 0.00 1.40
4025 4076 1.479730 GTACTCCCTCCGTTCCGAATT 59.520 52.381 0.00 0.00 0.00 2.17
4026 4077 1.109609 GTACTCCCTCCGTTCCGAAT 58.890 55.000 0.00 0.00 0.00 3.34
4027 4078 0.251297 TGTACTCCCTCCGTTCCGAA 60.251 55.000 0.00 0.00 0.00 4.30
4028 4079 0.033796 ATGTACTCCCTCCGTTCCGA 60.034 55.000 0.00 0.00 0.00 4.55
4029 4080 0.102481 CATGTACTCCCTCCGTTCCG 59.898 60.000 0.00 0.00 0.00 4.30
4030 4081 0.179081 GCATGTACTCCCTCCGTTCC 60.179 60.000 0.00 0.00 0.00 3.62
4031 4082 0.179081 GGCATGTACTCCCTCCGTTC 60.179 60.000 0.00 0.00 0.00 3.95
4032 4083 0.907704 TGGCATGTACTCCCTCCGTT 60.908 55.000 0.00 0.00 0.00 4.44
4033 4084 0.907704 TTGGCATGTACTCCCTCCGT 60.908 55.000 0.00 0.00 0.00 4.69
4034 4085 0.251916 TTTGGCATGTACTCCCTCCG 59.748 55.000 0.00 0.00 0.00 4.63
4035 4086 2.507407 TTTTGGCATGTACTCCCTCC 57.493 50.000 0.00 0.00 0.00 4.30
4036 4087 3.440522 GTCTTTTTGGCATGTACTCCCTC 59.559 47.826 0.00 0.00 0.00 4.30
4037 4088 3.074538 AGTCTTTTTGGCATGTACTCCCT 59.925 43.478 0.00 0.00 0.00 4.20
4038 4089 3.421844 AGTCTTTTTGGCATGTACTCCC 58.578 45.455 0.00 0.00 0.00 4.30
4039 4090 4.518970 TCAAGTCTTTTTGGCATGTACTCC 59.481 41.667 0.00 0.00 0.00 3.85
4040 4091 5.452777 GTCAAGTCTTTTTGGCATGTACTC 58.547 41.667 0.00 0.00 32.99 2.59
4041 4092 4.278419 GGTCAAGTCTTTTTGGCATGTACT 59.722 41.667 0.00 0.00 34.40 2.73
4150 4205 8.761575 ACAGAAGTTACAAATGCCAATAAATG 57.238 30.769 0.00 0.00 0.00 2.32
4153 4208 9.039870 CAAAACAGAAGTTACAAATGCCAATAA 57.960 29.630 0.00 0.00 36.84 1.40
4160 4215 8.379902 GGTTCAACAAAACAGAAGTTACAAATG 58.620 33.333 0.00 0.00 36.84 2.32
4250 4307 4.160814 ACATGGGCAGTAAGTCGTATGTTA 59.839 41.667 0.00 0.00 29.55 2.41
4723 4785 3.057033 GGCTCAAAGATGCTGAACACATT 60.057 43.478 0.00 0.00 0.00 2.71
4724 4786 2.490903 GGCTCAAAGATGCTGAACACAT 59.509 45.455 0.00 0.00 0.00 3.21
4730 4792 2.165167 CCAAAGGCTCAAAGATGCTGA 58.835 47.619 0.00 0.00 0.00 4.26
4800 4870 8.752187 ACTGAATGGCAATATCTTTTTACACAT 58.248 29.630 0.00 0.00 0.00 3.21
4808 4878 8.462016 GTTAAGACACTGAATGGCAATATCTTT 58.538 33.333 0.00 0.00 39.81 2.52
4813 4883 6.711277 AGAGTTAAGACACTGAATGGCAATA 58.289 36.000 0.00 0.00 39.81 1.90
4869 4939 9.770097 TTCAATACAGCAAACCAAATTTTATCA 57.230 25.926 0.00 0.00 0.00 2.15
4926 5001 9.649167 CATTGGAGAATTTTTGCTAAGAGAAAT 57.351 29.630 0.00 0.00 0.00 2.17
4938 5013 6.168389 GCATTCTGACCATTGGAGAATTTTT 58.832 36.000 10.37 0.00 34.82 1.94
4967 5042 6.712095 GGCAAGAGTTAATGATCATGTATGGA 59.288 38.462 9.46 0.00 0.00 3.41
4968 5043 6.713903 AGGCAAGAGTTAATGATCATGTATGG 59.286 38.462 9.46 0.00 0.00 2.74
5039 5114 8.812329 CAAGATAGCAATATAAATCTAGACGGC 58.188 37.037 0.00 0.00 0.00 5.68
5077 5152 2.225267 CCATCAAGGGTTAAAGGGTGGT 60.225 50.000 0.00 0.00 0.00 4.16
5490 5569 8.049117 ACATATGGCAATCTTAGAAGTGAGAAA 58.951 33.333 7.80 0.00 0.00 2.52
5511 5590 5.939764 AGACGATGGCCATGTATACATAT 57.060 39.130 26.56 8.18 34.26 1.78
5512 5591 5.738619 AAGACGATGGCCATGTATACATA 57.261 39.130 26.56 3.31 34.26 2.29
5521 5600 0.394352 GACCCAAAGACGATGGCCAT 60.394 55.000 20.96 20.96 36.58 4.40
5634 5718 4.202080 GGTTGGACCTAAAACTTGAACACC 60.202 45.833 0.00 0.00 34.73 4.16
5659 5743 5.178067 CCGAATTTAACCGTAAACACTCTGT 59.822 40.000 0.00 0.00 32.04 3.41
5744 5829 5.160607 ACTGACCATCCGAGAATTTTGTA 57.839 39.130 0.00 0.00 0.00 2.41
5971 6124 1.705745 AGGGTCAAGGGGAAGAAGAAC 59.294 52.381 0.00 0.00 0.00 3.01
6285 6439 7.004086 TGTCAAAACAGAAGGATCCAGTTATT 58.996 34.615 15.82 0.00 0.00 1.40
6447 6601 3.495377 TGGGTAAACGAAAGAACATGTCG 59.505 43.478 0.00 0.00 40.56 4.35
6448 6602 5.622770 ATGGGTAAACGAAAGAACATGTC 57.377 39.130 0.00 0.00 0.00 3.06
6569 6723 4.884164 CAGGTCTTGAGGAACTTTTTCACT 59.116 41.667 0.00 0.00 40.55 3.41
6773 6927 9.436957 GCGAAAGAAATATCAGATAGGGAAATA 57.563 33.333 0.00 0.00 0.00 1.40
6774 6928 8.160106 AGCGAAAGAAATATCAGATAGGGAAAT 58.840 33.333 0.00 0.00 0.00 2.17
6775 6929 7.442364 CAGCGAAAGAAATATCAGATAGGGAAA 59.558 37.037 0.00 0.00 0.00 3.13
6776 6930 6.931281 CAGCGAAAGAAATATCAGATAGGGAA 59.069 38.462 0.00 0.00 0.00 3.97
6777 6931 6.459066 CAGCGAAAGAAATATCAGATAGGGA 58.541 40.000 0.00 0.00 0.00 4.20
6778 6932 5.121454 GCAGCGAAAGAAATATCAGATAGGG 59.879 44.000 0.00 0.00 0.00 3.53
6779 6933 5.931146 AGCAGCGAAAGAAATATCAGATAGG 59.069 40.000 0.00 0.00 0.00 2.57
6780 6934 6.423302 ACAGCAGCGAAAGAAATATCAGATAG 59.577 38.462 0.00 0.00 0.00 2.08
6781 6935 6.283694 ACAGCAGCGAAAGAAATATCAGATA 58.716 36.000 0.00 0.00 0.00 1.98
6782 6936 5.121811 ACAGCAGCGAAAGAAATATCAGAT 58.878 37.500 0.00 0.00 0.00 2.90
6783 6937 4.507710 ACAGCAGCGAAAGAAATATCAGA 58.492 39.130 0.00 0.00 0.00 3.27
6784 6938 4.871993 ACAGCAGCGAAAGAAATATCAG 57.128 40.909 0.00 0.00 0.00 2.90
6820 6995 1.208358 CATGTGTTGGCGACAGCTG 59.792 57.895 13.48 13.48 44.54 4.24
6873 7048 7.778185 AGCGTAGGGAATAGAGTTTATATGT 57.222 36.000 0.00 0.00 0.00 2.29
6885 7329 3.428452 CGACAACAGAAGCGTAGGGAATA 60.428 47.826 0.00 0.00 0.00 1.75
6895 7339 3.120792 TGTAGAACACGACAACAGAAGC 58.879 45.455 0.00 0.00 0.00 3.86
6906 7350 5.842907 TGAGATGGGATATTGTAGAACACG 58.157 41.667 0.00 0.00 0.00 4.49
6910 7354 7.283127 GCTGTTTTGAGATGGGATATTGTAGAA 59.717 37.037 0.00 0.00 0.00 2.10
6916 7360 5.126061 GTGTGCTGTTTTGAGATGGGATATT 59.874 40.000 0.00 0.00 0.00 1.28
6921 7365 2.233271 AGTGTGCTGTTTTGAGATGGG 58.767 47.619 0.00 0.00 0.00 4.00
6955 7403 6.449635 TTGAGTATATCACCAAAACATGCC 57.550 37.500 0.00 0.00 37.77 4.40
6965 7413 7.709613 ACGAGTACCAATTTTGAGTATATCACC 59.290 37.037 0.00 0.00 37.77 4.02
7064 7513 4.072131 GTCCTCTTTTTCCATACACAGCA 58.928 43.478 0.00 0.00 0.00 4.41
7071 7520 6.668283 ACTAGCACTAGTCCTCTTTTTCCATA 59.332 38.462 4.47 0.00 42.30 2.74
7146 7599 6.159575 TCCTTTTGAGGTATGGATATGGTTCA 59.840 38.462 0.00 0.00 0.00 3.18
7317 7771 3.053455 GAGGAAATATCGTCTTCAGGCG 58.947 50.000 0.00 0.00 37.46 5.52
7318 7772 3.053455 CGAGGAAATATCGTCTTCAGGC 58.947 50.000 0.00 0.00 38.12 4.85
7383 7837 0.396435 TGTGAGAAGCGGAATGTGGT 59.604 50.000 0.00 0.00 0.00 4.16
7384 7838 1.667724 GATGTGAGAAGCGGAATGTGG 59.332 52.381 0.00 0.00 0.00 4.17


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.